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Gene RAB5BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
494 supporting clones for gene RAB5B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL597378   .a 1 to 486 1 to 487   tiling clone,   487/501
(97 %)
4 diff
(99.3 %id)
DB221196 trachea .a 11 to 581 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB219360 trachea .a 15 to 596 2 to 583   tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
DA726014   .a 19 to 506 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
BU844864 ovary, teratocarcinoma, cell line .a 494 to 1414 1 to 926   tiling clone,   926/928
(99 %)
15 diff
(98.4 %id)
DA458902 tongue, tumor tissue .b 1 to 493 2 to 494   tiling clone, capped   493/493
(100 %)
1 diff
(99.8 %id)
BU789864 insulinoma, Pancreas .b 274 to 791 8 to 525   tiling clone, fully sequenced,   518/525
(98 %)
6 diff
(98.9 %id)
BU789590 insulinoma, Pancreas .b 761 to 1380 620 to 1   tiling clone, fully sequenced,   620/620
(100 %)
1 diff
(99.9 %id)
DA811144 brain .c 1 to 351 2 to 352   tiling clone, capped   351/351
(100 %)
1 diff
(99.8 %id)
DA401343 thalamus .c 24 to 366 2 to 344   capped   343/343
(100 %)
0 diff
(100 %id)
DB004235 breast, tumor tissue .c 30 to 491 2 to 463   tiling clone, capped   462/462
(100 %)
1 diff
(99.8 %id)
DA187957 amygdala .c 38 to 227 2 to 191   capped   190/190
(100 %)
0 diff
(100 %id)
DA078614 cerebellum .c 39 to 544 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DA809884 brain .c 39 to 604 2 to 567   capped   566/566
(100 %)
4 diff
(99.3 %id)
DA297458 hippocampus .c 42 to 627 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA759399   .c 43 to 535 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
DA779992 brain .c 44 to 613 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA851625 placenta .c 48 to 635 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
BP209273 cerebellum .c 57 to 635 1 to 579       579/579
(100 %)
3 diff
(99.5 %id)
DA723457   .c 57 to 615 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
TI_151805775   .c 57 to 659 77 to 680     Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 604/970
(62 %)
35 diff
(96.4 %id)
BM548884 duodenal adenocarcinoma, cell line, small intestine .c 58 to 937 1 to 894 G191S S196K R197P V199W D200W ...     894/1001
(89 %)
19 diff
(98.2 %id)
DA292989 hippocampus .c 62 to 625 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA413124 thalamus .c 62 to 569 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
BC040143 Skin, melanotic melanoma. .c 63 to 3341 1 to 3279   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3279/3279
(100 %)
0 diff
(100 %id)
DA186433 amygdala .c 64 to 623 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA375532 thalamus .c 64 to 633 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA394847 thalamus .c 64 to 647 2 to 585   capped   584/585
(99 %)
3 diff
(99.5 %id)
DA649843   .c 64 to 627 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA762812 tongue .c 64 to 630 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA789069 brain .c 64 to 637 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA213295 brain .c 65 to 535 2 to 471   capped   470/470
(100 %)
0 diff
(100 %id)
DA308960 hippocampus .c 65 to 635 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA393963 thalamus .c 65 to 654 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA417724 thalamus .c 65 to 639 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA759354   .c 65 to 612 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA853060 placenta .c 65 to 629 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB098975 testis .c 65 to 652 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DB239859 trachea .c 65 to 632 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BX537408 human endometrium .c 66 to 3341 1 to 3276   available from DKFZ, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3276/3276
(100 %)
1 diff
(100.0 %id)
NM_002868.2   .c 66 to 3341 1 to 3276   RefSeq, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3276/3276
(100 %)
1 diff
(100.0 %id)
AL708561 human skeletal muscle .c 67 to 369 1 to 303       303/303
(100 %)
0 diff
(100 %id)
BP375078 umbilical cord .c 67 to 648 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA120383 cerebellum .c 68 to 535 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA187802 amygdala .c 68 to 617 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA352844 substantia nigra .c 68 to 655 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA402871 thalamus .c 68 to 666 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DA411636 thalamus .c 68 to 628 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA458141 tongue, tumor tissue .c 68 to 649 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA472423   .c 68 to 230 2 to 164   capped   163/163
(100 %)
0 diff
(100 %id)
AL709073 human skeletal muscle .c 68 to 366 1 to 299       299/299
(100 %)
0 diff
(100 %id)
DA517818 brain .c 68 to 351 2 to 285   capped   284/284
(100 %)
0 diff
(100 %id)
DA574546   .c 68 to 647 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA677218   .c 68 to 663 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA756596   .c 68 to 622 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA788770 brain .c 68 to 652 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA810190 brain .c 68 to 633 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB013534 esophageal, tumor tissue .c 68 to 470 2 to 404   capped   403/403
(100 %)
0 diff
(100 %id)
DB134323 thymus .c 68 to 577 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
DB150090 thymus .c 68 to 643 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DB151989 thymus .c 68 to 662 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DB220615 trachea .c 68 to 631 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB283702 uterus .c 68 to 535 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA440144 tongue, tumor tissue .c 69 to 664 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA888460   .c 70 to 649 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA206992 brain .c 73 to 640 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
CN414042 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 73 to 648 1 to 576       576/576
(100 %)
2 diff
(99.7 %id)
DA991957 synovial membrane tissue from rheumatioidarthritis .c 73 to 335 2 to 264   capped   263/263
(100 %)
0 diff
(100 %id)
DB204881 trachea .c 73 to 650 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
BP345675 synovial membrane .c 74 to 653 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DA418147 thalamus .c 75 to 612 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA439621 tongue, tumor tissue .c 75 to 656 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA459664 tongue, tumor tissue .c 75 to 535 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
BM809007 brain, hippocampus .c 75 to 746 20 to 695       676/1019
(66 %)
20 diff
(98.1 %id)
DA640416 Liver .c 75 to 639 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB226635 trachea .c 75 to 647 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BX417180 placenta .c 77 to 1143 1 to 1058 R4X Q20H F21X K22Q L23I ...     1058/1060
(99 %)
23 diff
(97.9 %id)
BP357928 mammary gland .c 77 to 658 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA192901 amygdala .c 78 to 661 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BP214645 corpus callosum .c 78 to 658 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
BP250910 hippocampus .c 78 to 660 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP312285 brain .c 78 to 655 1 to 578       578/582
(99 %)
3 diff
(99.5 %id)
DA079573 cerebellum .c 79 to 648 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA128411 cerebellum .c 79 to 667 2 to 590   capped   589/590
(99 %)
0 diff
(100 %id)
DA414314 thalamus .c 79 to 645 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA456938 tongue, tumor tissue .c 79 to 659 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA674023   .c 79 to 674 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA674058   .c 79 to 668 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA852657 placenta .c 79 to 633 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA854297 placenta .c 79 to 671 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DA855544 placenta .c 79 to 636 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA864638 placenta .c 79 to 656 2 to 582   capped   581/581
(100 %)
5 diff
(99.2 %id)
DB063209 testis .c 79 to 599 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DB153144 thymus .c 79 to 653 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA144799 amygdala .c 83 to 665 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA306912 hippocampus .c 83 to 659 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA397513 thalamus .c 83 to 682 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
DA857853 placenta .c 83 to 630 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BX473836   .c 84 to 247 1 to 161       161/161
(100 %)
16 diff
(90.1 %id)
DB160829 thymus .c 84 to 663 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DA477267   .c 85 to 644 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BU177581 melanotic melanoma, skin .c 85 to 968 1 to 896 V170G A176G L181V P182A Q187P ...     896/911
(98 %)
48 diff
(94.8 %id)
DA696032   .c 85 to 652 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BC050558 Peripheral Nervous System, sympathetictrunk .c 86 to 3341 1 to 3256   available from MGC, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3256/3256
(100 %)
0 diff
(100 %id)
DA410206 thalamus .c 86 to 646 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA127508 cerebellum .c 87 to 669 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA230012 brain .c 87 to 614 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA355800 subthalamic nucleus .c 87 to 649 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA358098 subthalamic nucleus .c 87 to 651 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA404522 thalamus .c 87 to 678 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA418261 thalamus .c 87 to 634 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA508519 brain .c 87 to 665 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA524258 brain .c 87 to 639 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA554112   .c 87 to 651 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA714719   .c 87 to 642 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA716484   .c 87 to 659 2 to 575   capped   574/577
(99 %)
3 diff
(99.5 %id)
DA757699   .c 87 to 652 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA810851 brain .c 87 to 642 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA853536 placenta .c 87 to 645 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA947615 Spleen .c 87 to 626 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB090944 testis .c 87 to 679 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DB222844 trachea .c 87 to 638 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB226522 trachea .c 87 to 669 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB227820 trachea .c 87 to 651 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BQ716215 sympathetic trunk .c 88 to 792 1 to 713       713/969
(73 %)
16 diff
(98.4 %id)
DA798392 brain .c 88 to 641 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CR978120 T-Lymphocytes .c 88 to 792 1 to 708       708/708
(100 %)
7 diff
(99.1 %id)
DA439170 tongue, tumor tissue .c 89 to 631 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
AL705769 human skeletal muscle .c 89 to 737 1 to 649       649/649
(100 %)
1 diff
(99.9 %id)
DA578219   .c 89 to 562 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA797922 brain .c 89 to 645 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA860479 placenta .c 89 to 589 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
DB155123 thymus .c 89 to 666 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB216291 trachea .c 89 to 631 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
AK292597 testis .c 90 to 1183 1 to 1094       1094/1094
(100 %)
1 diff
(100.0 %id)
DA202276 brain .c 90 to 655 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA574636   .c 90 to 652 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BM468178 melanotic melanoma, skin .c 90 to 873 13 to 799 S196K R197P V199C D200G L201S ...     787/1030
(76 %)
11 diff
(99.0 %id)
DA029730   .c 91 to 662 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA120289 cerebellum .c 91 to 652 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA188778 amygdala .c 91 to 535 2 to 445   capped   444/444
(100 %)
0 diff
(100 %id)
DA234177 brain .c 91 to 656 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA291031 hippocampus .c 91 to 679 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA374586 thalamus .c 91 to 545 2 to 456   capped   455/455
(100 %)
0 diff
(100 %id)
DA440885 tongue, tumor tissue .c 91 to 643 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA451396 tongue, tumor tissue .c 91 to 650 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA451643 tongue, tumor tissue .c 91 to 648 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA475155   .c 91 to 653 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AL597347   .c 91 to 697 1 to 607       607/607
(100 %)
0 diff
(100 %id)
DA495101 brain .c 91 to 648 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA578035   .c 91 to 654 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA654354   .c 91 to 550 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
DA657435   .c 91 to 666 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA714864   .c 91 to 611 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA720109   .c 91 to 502 2 to 413   capped   412/412
(100 %)
0 diff
(100 %id)
DA755887   .c 91 to 666 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA758662   .c 91 to 645 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA802112 brain .c 91 to 639 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA854951 placenta .c 91 to 677 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA864092 placenta .c 91 to 675 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA998497   .c 91 to 360 2 to 271   capped   270/270
(100 %)
0 diff
(100 %id)
DB075857 testis .c 91 to 432 2 to 343   capped   342/342
(100 %)
0 diff
(100 %id)
DB087152 testis .c 91 to 652 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB097628 testis .c 91 to 692 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DB179741 kidney, tumor tissue .c 91 to 581 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DB230321 trachea .c 91 to 685 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DB253972 uterus .c 91 to 642 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB271573 uterus .c 91 to 656 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA111395 cerebellum .c 92 to 645 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA111426 cerebellum .c 92 to 655 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AL708368 human skeletal muscle .c 92 to 657 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DB001780 breast, tumor tissue .c 93 to 627 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB293216   .c 93 to 878 2 to 787 F159S M160W E161R T162L S163Q ... capped   786/786
(100 %)
9 diff
(98.9 %id)
DA050297   .c 94 to 671 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA077468 cerebellum .c 94 to 662 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA179452 amygdala .c 94 to 647 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA223909 brain .c 94 to 710 2 to 618   capped   617/617
(100 %)
1 diff
(99.9 %id)
DA402484 thalamus .c 94 to 532 2 to 440   capped   439/439
(100 %)
0 diff
(100 %id)
DA409555 thalamus .c 94 to 641 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA414461 thalamus .c 94 to 662 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA579150   .c 94 to 644 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA720810   .c 94 to 599 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DA857001 placenta .c 94 to 646 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB076054 testis .c 94 to 634 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB092700 testis .c 94 to 649 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB134917 thymus .c 94 to 341 2 to 249   capped   248/248
(100 %)
0 diff
(100 %id)
DB234174 trachea .c 94 to 669 2 to 577   capped   576/577
(99 %)
1 diff
(99.9 %id)
DB238291 trachea .c 94 to 671 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB277393 uterus .c 94 to 636 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA757024   .c 96 to 649 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BP327256 prostata .c 96 to 675 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DB152952 thymus .c 96 to 673 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA798784 brain .c 98 to 642 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
CX756810 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 103 to 882 1 to 774 N139H T162N D172E L173S F174L ...   Submitted on the opposite strand 774/782
(98 %)
35 diff
(95.6 %id)
BM799761 eye, retinoblastoma .c 105 to 873 1 to 777 R195P S196K R197P D200W L201I ...     777/1209
(64 %)
12 diff
(99.1 %id)
BC065298 Eye, retinoblastoma .c 108 to 3341 1 to 3234   available from MGC, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3234/3234
(100 %)
1 diff
(100.0 %id)
CN414047 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 110 to 776 1 to 667       667/667
(100 %)
1 diff
(99.9 %id)
BC056422 Skin, melanotic melanoma. .c 111 to 3341 1 to 3231   available from MGC, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3231/3231
(100 %)
1 diff
(100.0 %id)
BM450760 eye, retinoblastoma .c 112 to 757 12 to 664       653/950
(68 %)
14 diff
(98.6 %id)
CV813291 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 112 to 878 27 to 796 G191S A193T G194R R195P S196N ...     770/796
(96 %)
19 diff
(97.7 %id)
CN414056 embryonic stem cells, cell lines H1, H7, andH9 .c 115 to 619 1 to 505       505/505
(100 %)
0 diff
(100 %id)
BM454636 embryonal carcinoma, cell line, testis .c 118 to 1021 1 to 913       913/986
(92 %)
17 diff
(98.3 %id)
CV571910 cornea, eye .c 119 to 698 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
TI_151722262   .c 2618 to 3350 820 to 90   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 731/906
(80 %)
57 diff
(93.8 %id)
DB086562 testis .d 1 to 547 2 to 548   tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
DB096615 testis .d 29 to 574 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB073418 testis .d 39 to 573 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BC032740 Skin, melanotic melanoma. .d 63 to 3300 12 to 3249 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3238/3238
(100 %)
0 diff
(100 %id)
BM472546 melanotic melanoma, skin .d 64 to 835 1 to 775 K180E L181V P182A S184E E185*     775/954
(81 %)
15 diff
(98.5 %id)
CN414059 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 87 to 652 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
CN414048 embryonic stem cells, cell lines H1, H7, andH9 .d 88 to 832 1 to 744 exact     744/744
(100 %)
1 diff
(99.9 %id)
CN414050 embryonic stem cells, cell lines H1, H7, andH9 .d 98 to 717 1 to 620       620/620
(100 %)
0 diff
(100 %id)
CN414043 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 106 to 622 1 to 517       517/517
(100 %)
0 diff
(100 %id)
CN414060 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 127 to 788 1 to 663       663/663
(100 %)
6 diff
(99.1 %id)
DA099484 cerebellum .d 136 to 693 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DN993754 brain, whole brain .d 154 to 867 32 to 745 G190X     714/745
(95 %)
6 diff
(99.2 %id)
X54871   .d 160 to 1781 1 to 1629 exact     1629/1630
(99 %)
32 diff
(98.1 %id)
AF498937 brain .d 180 to 827 1 to 648 exact     648/648
(100 %)
0 diff
(100 %id)
CR536482   .d 180 to 827 1 to 648 K22E     648/648
(100 %)
2 diff
(99.7 %id)
CR541690   .d 180 to 824 1 to 645       645/645
(100 %)
0 diff
(100 %id)
CB565917 mixed .d 180 to 827 1 to 648 exact     648/649
(99 %)
1 diff
(99.9 %id)
CN414046 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 190 to 315 1 to 126       126/126
(100 %)
0 diff
(100 %id)
DA801443 brain .d 218 to 781 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
DB084923 testis .d 229 to 775 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA435796 tongue, tumor tissue .d 239 to 806 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA476099   .d 239 to 796 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AK307468 hippocampus .d 288 to 1487 1 to 1200       1200/1200
(100 %)
0 diff
(100 %id)
DA300526 hippocampus .d 289 to 868 2 to 581   capped   580/581
(99 %)
1 diff
(99.9 %id)
BQ962142 epithelioid carcinoma cell line, Pancreas .d 344 to 1127 823 to 39   AAA Submitted on the opposite strand 785/836
(93 %)
5 diff
(99.5 %id)
BQ301010 bladder_tumor .d 414 to 674 1 to 267       262/271
(96 %)
14 diff
(94.9 %id)
BG252204 adenocarcinoma, cell line, Liver .d 418 to 1177 1 to 764       764/891
(85 %)
28 diff
(96.9 %id)
BG391431 embryonal carcinoma, cell line, testis .d 439 to 1222 1 to 776       776/811
(95 %)
14 diff
(98.3 %id)
DA306846 hippocampus .d 444 to 1012 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA310538 hippocampus .d 447 to 1019 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB255984 uterus .d 448 to 996 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
ES315486 occipital scalp hair, skin .d 457 to 604 1 to 148       148/148
(100 %)
0 diff
(100 %id)
BQ719117 sympathetic trunk .d 467 to 1350 1 to 886       886/927
(95 %)
12 diff
(98.8 %id)
DA520896 brain .d 484 to 1023 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
CF265109 Brain glioblastoma .d 493 to 1366 1 to 881       881/881
(100 %)
13 diff
(98.6 %id)
DA081149 cerebellum .d 501 to 1064 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BP293394 lung .d 501 to 1083 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BG030271 breast, mammary adenocarcinoma, cell line .d 526 to 1330 1 to 810       810/1191
(68 %)
37 diff
(96.9 %id)
DA455248 tongue, tumor tissue .d 556 to 1116 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA689380   .d 559 to 1107 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
TI_57234983   .d 589 to 1366 28 to 805       778/851
(91 %)
12 diff
(98.6 %id)
BI907828 leukocyte .d 590 to 1366 1 to 777       777/823
(94 %)
6 diff
(99.3 %id)
BP331171 rectum .d 596 to 1178 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CA413660 Chondrosarcoma Grade II, Left Pelvis .d 626 to 1356 745 to 15   AAA   731/731
(100 %)
0 diff
(100 %id)
CN414045 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 641 to 1260 9 to 628       620/628
(98 %)
6 diff
(99.1 %id)
TI_154195705   .d 662 to 1478 7 to 821       815/1043
(78 %)
42 diff
(96.0 %id)
TI_154196009   .d 667 to 1547 19 to 895       877/1079
(81 %)
44 diff
(96.0 %id)
TI_154197337   .d 667 to 1559 71 to 956       886/1001
(88 %)
25 diff
(97.6 %id)
TI_154197641   .d 667 to 1524 81 to 923       843/970
(86 %)
25 diff
(97.5 %id)
BF791993 adrenal cortex carcinoma, cell line, adrenal gland .d 683 to 1440 1 to 751       751/961
(78 %)
18 diff
(98.2 %id)
BP361681 thalamus .d 687 to 1278 1 to 592       592/592
(100 %)
0 diff
(100 %id)
DA304220 hippocampus .d 692 to 1243 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP250961 hippocampus .d 724 to 1305 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP250983 hippocampus .d 724 to 1305 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA944872 Spleen .d 727 to 1277 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BF437606 Prostate .d 821 to 1397 577 to 1       577/577
(100 %)
0 diff
(100 %id)
AF267863   .d 822 to 3313 1 to 2493       2493/2493
(100 %)
8 diff
(99.7 %id)
DA135851 alzheimer cortex .d 840 to 1383 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BE795891 lung, small cell carcinoma .d 840 to 1481 1 to 642       642/643
(99 %)
1 diff
(99.9 %id)
DA527884 brain .d 844 to 1423 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
AL709988 human skeletal muscle .d 868 to 1528 1 to 663       663/663
(100 %)
4 diff
(99.4 %id)
EL594141 epidermis, skin .d 875 to 1678 802 to 15     Submitted on the opposite strand 788/804
(98 %)
0 diff
(100 %id)
DA890282 rectum .d 915 to 1471 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BX279587 brain .d 922 to 1428 1 to 507       507/507
(100 %)
0 diff
(100 %id)
BI913309 brain .d 922 to 1742 1 to 821       821/821
(100 %)
4 diff
(99.6 %id)
TI_57241279   .d 922 to 1742 30 to 850       821/850
(96 %)
6 diff
(99.3 %id)
DA835000 placenta .d 970 to 1510 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA353545 substantia nigra .d 983 to 1532 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA938759 Spleen .d 989 to 1529 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BM552427 leiomyosarcoma, uterus .d 1014 to 1937 1 to 936       936/1004
(93 %)
22 diff
(97.9 %id)
AA337816 endometrium .d 1085 to 1324 1 to 240       240/240
(100 %)
0 diff
(100 %id)
DA627038 Kidney .d 1116 to 1663 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
BP306361   .d 1123 to 1705 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA084176 cerebellum .d 1125 to 1594 2 to 471   capped   470/470
(100 %)
0 diff
(100 %id)
CD654391 Embryonic Stem cells .d 1158 to 1926 55 to 818       764/862
(88 %)
10 diff
(98.9 %id)
BQ649327 hepatocellular carcinoma, cell line, Liver .d 1161 to 2016 1 to 862       862/937
(91 %)
30 diff
(96.8 %id)
BQ650964 hepatocellular carcinoma, cell line, Liver .d 1161 to 1932 1 to 776       776/985
(78 %)
18 diff
(98.2 %id)
BQ646288 hepatocellular carcinoma, cell line, Liver .d 1163 to 2023 10 to 887       878/992
(88 %)
45 diff
(95.5 %id)
DB199789 trachea .d 1163 to 1731 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BQ642005 lymph, lymphoma, cell line .d 1183 to 1879 15 to 723       709/847
(83 %)
6 diff
(99.3 %id)
BM801683 duodenal adenocarcinoma, cell line, small intestine .d 1224 to 1906 1 to 684       684/945
(72 %)
15 diff
(98.5 %id)
DA265086 caudate nucleus .d 1298 to 1869 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BE888999 leiomyosarcoma, uterus .d 1302 to 1986 1 to 676       676/727
(92 %)
17 diff
(97.7 %id)
DB206488 trachea .d 1308 to 1880 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
TI_57167847   .d 1328 to 2220 98 to 980       883/1002
(88 %)
9 diff
(99.2 %id)
CR621175 Placenta Cot 25-normalized .d 1331 to 3263 1 to 1933       1933/1933
(100 %)
0 diff
(100 %id)
BX381691 Placenta Cot 25-normalized .d 1331 to 2302 1 to 968   fully sequenced,   968/968
(100 %)
2 diff
(99.8 %id)
BM839563 Ascites, stomach .d 1349 to 1745 1 to 397       397/397
(100 %)
0 diff
(100 %id)
CV569432 cornea, eye .d 1357 to 1889 1 to 533       533/533
(100 %)
0 diff
(100 %id)
BP344740 synovial membrane .d 1385 to 1965 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BG679081 skin, squamous cell carcinoma .d 1415 to 2223 1 to 810       810/811
(99 %)
5 diff
(99.4 %id)
CF242896 Brain glioblastoma .d 1429 to 2285 1 to 859       859/859
(100 %)
7 diff
(99.2 %id)
AW992978 breast_normal .d 1445 to 1557 1 to 113       113/117
(96 %)
6 diff
(94.9 %id)
CR597002 HeLa cells Cot 25-normalized .d 1449 to 3316 1 to 1868       1868/1868
(100 %)
0 diff
(100 %id)
BX384213   .d 1449 to 2449 1 to 984   fully sequenced,   984/984
(100 %)
12 diff
(98.8 %id)
BE765776 nervous_tumor .d 1450 to 1940 1 to 491       491/491
(100 %)
0 diff
(100 %id)
CR594499 Placenta Cot 25-normalized .d 1461 to 3280 1 to 1820       1820/1820
(100 %)
0 diff
(100 %id)
CR614791 Placenta Cot 25-normalized .d 1461 to 3252 1 to 1792       1792/1792
(100 %)
0 diff
(100 %id)
BX398567 Placenta Cot 25-normalized .d 1461 to 2419 1 to 945   fully sequenced,   945/945
(100 %)
4 diff
(99.6 %id)
BX398604 Placenta Cot 25-normalized .d 1461 to 2491 1 to 1027       1027/1027
(100 %)
11 diff
(99.0 %id)
DB118802 thymus .d 1469 to 2025 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BE892237 melanotic melanoma, skin .d 1472 to 2184 1 to 713       713/1009
(70 %)
13 diff
(98.8 %id)
BU188668 melanotic melanoma, cell line, skin .d 1493 to 2348 1 to 864       864/911
(94 %)
19 diff
(98.0 %id)
BE278312 choriocarcinoma, placenta .d 1505 to 1600 1 to 97       97/97
(100 %)
2 diff
(98.0 %id)
CD519651 White Matter .d 1505 to 2322 1 to 822       822/869
(94 %)
11 diff
(98.8 %id)
CX872163 embryonic stem .d 1519 to 2277 1 to 759       759/759
(100 %)
0 diff
(100 %id)
BG707040 brain, hypothalamus .d 1520 to 2296 1 to 771       771/798
(96 %)
25 diff
(96.9 %id)
BI870595 adenocarcinoma, cell line, Liver .d 1535 to 2373 1 to 855       855/855
(100 %)
20 diff
(97.7 %id)
TI_57229525   .d 1535 to 2373 89 to 943       855/855
(100 %)
20 diff
(97.7 %id)
EC470268 Prostate .d 1560 to 1664 111 to 12       100/113
(88 %)
0 diff
(100 %id)
FN158048 breast carcinoma .d 1607 to 1711 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
DA042282 bladder .d 1622 to 2191 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
AL047609 uterus .d 1632 to 2368 1 to 733       733/733
(100 %)
7 diff
(99.1 %id)
TI_57229486   .d 1672 to 2175 58 to 562       505/505
(100 %)
1 diff
(99.9 %id)
DA572464 whole embryo, mainly body .d 1676 to 2532 2 to 854   capped   853/855
(99 %)
12 diff
(98.6 %id)
DA360859 subthalamic nucleus .d 1740 to 2244 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
CN415576 embryonic stem cells, DMSO-treated H9 cellline .d 1747 to 2416 8 to 677       670/677
(98 %)
6 diff
(99.2 %id)
BI093767 cervix .d 1753 to 2606 1 to 859       859/1058
(81 %)
34 diff
(96.8 %id)
BQ433962 embryonal carcinoma, cell line, testis .d 1756 to 2544 46 to 841       796/942
(84 %)
31 diff
(96.8 %id)
CN415575 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1765 to 2508 1 to 744       744/744
(100 %)
4 diff
(99.5 %id)
BM467716 leiomyosarcoma, uterus .d 1765 to 2849 1 to 1095       1095/1119
(97 %)
33 diff
(97.1 %id)
BF960014 nervous_normal .d 1779 to 2259 487 to 7       481/487
(98 %)
0 diff
(100 %id)
AA443362   .d 1814 to 2251 1 to 438       438/438
(100 %)
0 diff
(100 %id)
CB138694 Liver .d 1845 to 2308 1 to 464       464/464
(100 %)
0 diff
(100 %id)
AA402530 ovarian tumor, ovary .d 1850 to 2442 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BE179302 head_neck .d 1852 to 2534 1 to 681       681/681
(100 %)
3 diff
(99.6 %id)
BE550242 carcinoid, lung .d 1852 to 2285 1 to 434     Submitted on the opposite strand 434/434
(100 %)
0 diff
(100 %id)
BE884829 leiomyosarcoma, uterus .d 1856 to 2486 1 to 631       631/919
(68 %)
7 diff
(99.3 %id)
BQ949884 sciatic nerve .d 1881 to 2655 1 to 784       784/946
(82 %)
17 diff
(98.3 %id)
BG389673 embryonal carcinoma, cell line, testis .d 1882 to 2563 1 to 680       680/957
(71 %)
9 diff
(99.1 %id)
BQ233919 melanotic melanoma, skin .d 1893 to 2743 1 to 852       852/855
(99 %)
10 diff
(98.9 %id)
BY797684 eye .d 1910 to 2457 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
T34964 Pancreas .d 1922 to 2180 1 to 259       259/259
(100 %)
0 diff
(100 %id)
BM842983 lymph node, stomach .d 1932 to 2551 1 to 620       620/620
(100 %)
0 diff
(100 %id)
BM844634 lymph node, stomach .d 1954 to 2440 1 to 487       487/487
(100 %)
0 diff
(100 %id)
BF725398 eye, Iris .d 1979 to 2623 1 to 645       645/645
(100 %)
0 diff
(100 %id)
BE891410 melanotic melanoma, skin .d 1980 to 2733 1 to 756       756/758
(99 %)
21 diff
(97.3 %id)
BM480066 eye, retinoblastoma .d 2019 to 2934 1 to 931       931/1066
(87 %)
24 diff
(97.8 %id)
H54904   .d 2058 to 2395 1 to 338       338/338
(100 %)
0 diff
(100 %id)
CF135194 CNCAP(3)T-225 cell line, Prostate .d 2063 to 2610 8 to 555       548/555
(98 %)
6 diff
(99.0 %id)
TI_154163432   .d 2063 to 2844 80 to 863       784/786
(99 %)
21 diff
(97.4 %id)
T31306 brain .d 2077 to 2239 1 to 163       163/163
(100 %)
0 diff
(100 %id)
CU443468 epidermis .d 2086 to 2319 1 to 235       235/270
(87 %)
11 diff
(96.0 %id)
CU443572 epidermis .d 2086 to 2319 1 to 235       235/235
(100 %)
11 diff
(95.4 %id)
CU443758 epidermis .d 2086 to 2315 1 to 231       231/262
(88 %)
6 diff
(97.8 %id)
CU443889 epidermis .d 2086 to 2320 1 to 236       236/249
(94 %)
14 diff
(94.4 %id)
CU444461 epidermis .d 2086 to 2319 1 to 235       235/235
(100 %)
11 diff
(95.4 %id)
CU445327 epidermis .d 2086 to 2319 1 to 235       235/260
(90 %)
6 diff
(97.7 %id)
CU445335 epidermis .d 2086 to 2319 1 to 235       235/235
(100 %)
11 diff
(95.4 %id)
CU447021 epidermis .d 2086 to 2319 1 to 235       235/263
(89 %)
11 diff
(95.9 %id)
CU447089 epidermis .d 2086 to 2319 1 to 235       235/265
(88 %)
10 diff
(96.3 %id)
CU447499 epidermis .d 2086 to 2319 1 to 235       235/260
(90 %)
12 diff
(95.4 %id)
CU448770 epidermis .d 2086 to 2319 1 to 235       235/264
(89 %)
12 diff
(95.5 %id)
CU449545 epidermis .d 2086 to 2519 1 to 434       434/445
(97 %)
9 diff
(98.0 %id)
CU450549 epidermis .d 2086 to 2319 1 to 235       235/269
(87 %)
11 diff
(96.0 %id)
CU450835 epidermis .d 2086 to 2319 1 to 235       235/235
(100 %)
12 diff
(94.9 %id)
CU451465 epidermis .d 2086 to 2319 1 to 235       235/266
(88 %)
11 diff
(95.9 %id)
CU451474 epidermis .d 2086 to 2319 1 to 235       235/235
(100 %)
10 diff
(95.8 %id)
CU453536 epidermis .d 2086 to 2319 1 to 235       235/235
(100 %)
12 diff
(94.9 %id)
CU455234 epidermis .d 2086 to 2319 1 to 235       235/271
(86 %)
11 diff
(96.0 %id)
CU456969 epidermis .d 2086 to 2319 1 to 235       235/267
(88 %)
12 diff
(95.6 %id)
CU448584 epidermis .d 2091 to 2304 222 to 10     Submitted on the opposite strand 213/242
(88 %)
0 diff
(100 %id)
DR156536 human embryonic stem cells differentiated toan early endodermal cell type .d 2097 to 2838 1 to 742       742/742
(100 %)
0 diff
(100 %id)
EC531054 Prostate .d 2099 to 2212 1 to 113       113/116
(97 %)
8 diff
(93.2 %id)
CU443606 epidermis .d 2101 to 2315 16 to 231       216/244
(88 %)
7 diff
(97.2 %id)
CU444164 epidermis .d 2101 to 2310 16 to 225       210/226
(92 %)
4 diff
(98.3 %id)
BG119420 adenocarcinoma, cell line, Liver .d 2103 to 2876 1 to 776       776/1043
(74 %)
31 diff
(97.1 %id)
AW949413   .d 2104 to 2699 1 to 596       596/596
(100 %)
0 diff
(100 %id)
AW366908 head_neck .d 2140 to 2238 15 to 111       97/111
(87 %)
6 diff
(94.6 %id)
BM805484 brain, hippocampus .d 2167 to 3199 14 to 1069       1056/1161
(90 %)
6 diff
(99.5 %id)
BU193195 eye, retinoblastoma .d 2180 to 3111 1 to 935       935/936
(99 %)
19 diff
(98.0 %id)
CB959067 Pooled-Glandular .d 2190 to 2838 1 to 656       656/776
(84 %)
13 diff
(98.4 %id)
BU184297 melanotic melanoma, skin .d 2195 to 3081 1 to 896       896/904
(99 %)
14 diff
(98.5 %id)
BG678727 skin, squamous cell carcinoma .d 2205 to 2998 1 to 794       794/794
(100 %)
3 diff
(99.7 %id)
BX091261 melanocyte .d 2226 to 2902 1 to 676       676/676
(100 %)
1 diff
(99.9 %id)
C05042 heart .d 2236 to 2646 1 to 411       411/411
(100 %)
0 diff
(100 %id)
BX442633 brain, fetal brain .d 2239 to 3283 1038 to 1       1038/1095
(94 %)
11 diff
(99.0 %id)
BQ949360 sciatic nerve .d 2249 to 3169 1 to 932       932/932
(100 %)
23 diff
(97.6 %id)
BX358256 Placenta Cot 25-normalized .d 2259 to 3281 1014 to 1       1014/1026
(98 %)
19 diff
(98.2 %id)
BX381690 Placenta Cot 25-normalized .d 2272 to 3263 982 to 1   fully sequenced,   982/982
(100 %)
11 diff
(98.9 %id)
BG105398 adrenal cortex carcinoma, cell line, adrenal gland .d 2275 to 2947 1 to 671       671/876
(76 %)
8 diff
(99.1 %id)
CB138948 Liver .d 2286 to 2876 1 to 591       591/591
(100 %)
0 diff
(100 %id)
CB139940 Liver .d 2286 to 2876 1 to 591       591/591
(100 %)
0 diff
(100 %id)
CB139962 Liver .d 2286 to 2813 1 to 527       527/527
(100 %)
2 diff
(99.7 %id)
CB137079 Liver .d 2286 to 2431 1 to 146       146/146
(100 %)
0 diff
(100 %id)
CB133490 Liver .d 2286 to 2832 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
CB133997 Liver .d 2286 to 2870 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
CB134057 Liver .d 2286 to 2876 1 to 590       590/590
(100 %)
2 diff
(99.7 %id)
CB133615 Liver .d 2286 to 2858 1 to 573       573/573
(100 %)
2 diff
(99.7 %id)
CB137244 Liver .d 2286 to 2685 1 to 400       400/400
(100 %)
0 diff
(100 %id)
CF455367 peripheral nervous system .d 2319 to 3108 1 to 789       789/789
(100 %)
4 diff
(99.5 %id)
BQ068258 brain .d 2320 to 3212 7 to 909   AAA   903/909
(99 %)
22 diff
(97.6 %id)
BM925051 pooled lung and spleen .d 2333 to 3315 1 to 995       995/1054
(94 %)
31 diff
(97.1 %id)
BQ940048 sciatic nerve .d 2342 to 3200 1 to 863       863/903
(95 %)
15 diff
(98.4 %id)
BU568631 testis .d 2349 to 3113 1 to 774       774/779
(99 %)
14 diff
(98.3 %id)
BM712254 eye, lens .d 2354 to 2864 1 to 511       511/511
(100 %)
0 diff
(100 %id)
BM701983.
matches multiple genes
eye, optic nerve .d 2363 to 3060 1 to 693     also hits gene GIYD1andSULT1A3 693/697
(99 %)
6 diff
(99.2 %id)
BX398566 Placenta Cot 25-normalized .d 2389 to 3252 856 to 1   fully sequenced,   856/856
(100 %)
6 diff
(99.3 %id)
BY996482   .d 2410 to 3084 10 to 684       675/684
(98 %)
6 diff
(99.2 %id)
TI_149313469   .d 2410 to 3300 972 to 88   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 885/964
(91 %)
18 diff
(98.2 %id)
EH317022   .d 2411 to 2492 1 to 81       81/81
(100 %)
1 diff
(98.8 %id)
TI_149301840   .d 2411 to 3300 955 to 83   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 873/962
(90 %)
31 diff
(96.8 %id)
EH327246   .d 2415 to 2492 1 to 79       79/79
(100 %)
1 diff
(98.8 %id)
AW895112 nervous_normal .d 2418 to 2528 11 to 122       112/125
(89 %)
6 diff
(95.2 %id)
BX384212   .d 2419 to 3316 892 to 1   fully sequenced,   892/892
(100 %)
7 diff
(99.3 %id)
BQ216670 embryonal carcinoma, cell line, testis .d 2420 to 3300 1 to 883   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 883/883
(100 %)
12 diff
(98.7 %id)
CD511264 Blood vessels - aorta, basilar and artery .d 2425 to 3043 32 to 652       621/821
(75 %)
7 diff
(99.2 %id)
BQ716934 sympathetic trunk .d 2448 to 3188 1 to 739       739/939
(78 %)
6 diff
(99.4 %id)
CN273794 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2486 to 3236 1 to 752       752/752
(100 %)
1 diff
(99.9 %id)
BQ064721 lymph, lymphoma, cell line .d 2504 to 3264 1 to 765       765/1031
(74 %)
37 diff
(96.5 %id)
TI_154103370   .d 2511 to 3309 895 to 99   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 797/948
(84 %)
17 diff
(98.3 %id)
TI_149292099   .d 2524 to 3322 854 to 60       795/994
(79 %)
0 diff
(100 %id)
TI_154048084   .d 2524 to 3309 869 to 88   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 782/976
(80 %)
13 diff
(98.7 %id)
BE835018 prostate_normal .d 2552 to 2738 193 to 16       178/196
(90 %)
0 diff
(100 %id)
BE766571 nervous_tumor .d 2557 to 3158 602 to 1       602/602
(100 %)
0 diff
(100 %id)
BE766593 nervous_tumor .d 2557 to 3158 602 to 1       602/602
(100 %)
0 diff
(100 %id)
FN130029 breast carcinoma .d 2576 to 2664 4 to 88       85/88
(96 %)
6 diff
(93.2 %id)
TI_154122776   .d 2596 to 3317 791 to 78   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 714/941
(75 %)
14 diff
(98.6 %id)
CN273692 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 2608 to 3310 1 to 703       703/703
(100 %)
0 diff
(100 %id)
BQ004928 Chondrosarcoma, Left Pelvis .d 2667 to 3309 663 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 645/645
(100 %)
2 diff
(99.7 %id)
CB305375 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 2668 to 3300 651 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 633/633
(100 %)
0 diff
(100 %id)
BM974312 lung .d 2673 to 3300 647 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 629/629
(100 %)
2 diff
(99.7 %id)
BE966889 melanotic melanoma, skin .d 2680 to 3327 664 to 6       659/875
(75 %)
72 diff
(91.8 %id)
CA432728 cell lines, Chondrosarcoma .d 2687 to 3321 649 to 15       635/649
(97 %)
0 diff
(100 %id)
BU567868 testis .d 2692 to 3302 1 to 609       609/609
(100 %)
6 diff
(99.1 %id)
BQ182354 Knee, Osteoarthritic Cartilage .d 2698 to 3300 621 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 603/603
(100 %)
0 diff
(100 %id)
BM727209 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2706 to 2941 1 to 236       236/236
(100 %)
0 diff
(100 %id)
BU729648.
matches multiple genes
eye, optic nerve .d 2735 to 3309 593 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base), also hits gene GIYD2andSULT1A4 575/575
(100 %)
1 diff
(99.9 %id)
BM541542 leiomyosarcoma, uterus .d 2763 to 3300 1 to 538   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 538/538
(100 %)
0 diff
(100 %id)
AA503240 colon .d 2769 to 3300 531 to 1       531/531
(100 %)
4 diff
(99.3 %id)
AI660844 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 2774 to 3300 527 to 1       527/527
(100 %)
0 diff
(100 %id)
TI_151716343   .d 2780 to 3330 563 to 4       560/1374
(40 %)
37 diff
(97.4 %id)
TI_57237077   .d 2781 to 3319 29 to 568       540/1253
(43 %)
13 diff
(99.0 %id)
DB343828 thymus .d 2788 to 3324 537 to 1       537/537
(100 %)
2 diff
(99.7 %id)
BQ371676 prostate_normal .d 2805 to 2985 189 to 6       184/189
(97 %)
0 diff
(100 %id)
TI_159720737   .d 2875 to 3322 513 to 69       445/1079
(41 %)
0 diff
(100 %id)
FN137251 breast carcinoma .d 2881 to 2987 1 to 103       103/107
(96 %)
5 diff
(95.4 %id)
AW797535 uterus .d 2906 to 3001 94 to 1       94/115
(81 %)
2 diff
(98.3 %id)
DB556252 hypothalamus .d 2908 to 3317 1 to 417     Submitted on the opposite strand 417/417
(100 %)
34 diff
(91.9 %id)
N77518 liver and spleen .d 2987 to 3188 1 to 202       202/202
(100 %)
0 diff
(100 %id)
AI658687 Prostate .d 2988 to 3318 331 to 1       331/331
(100 %)
0 diff
(100 %id)
FN046398 breast carcinoma .d 2990 to 3076 89 to 1     Submitted on the opposite strand 89/89
(100 %)
3 diff
(96.7 %id)
AW512885 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 2991 to 3317 327 to 1       327/327
(100 %)
0 diff
(100 %id)
AW471393 adenocarcinoma, Pancreas .d 2993 to 3307 315 to 1       315/315
(100 %)
0 diff
(100 %id)
BE350213 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .d 2993 to 3325 343 to 11   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 333/333
(100 %)
0 diff
(100 %id)
AW518684 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 2996 to 3326 337 to 7       331/337
(98 %)
0 diff
(100 %id)
BE717909 head_neck .d 2998 to 3159 163 to 1       163/197
(82 %)
14 diff
(92.9 %id)
AI812088 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 2998 to 3306 309 to 1       309/309
(100 %)
0 diff
(100 %id)
CA312190 Human Lung Epithelial cells, lung .d 2998 to 3300 321 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 303/303
(100 %)
0 diff
(100 %id)
CA413169 Chondrosarcoma Grade II, Left Pelvis .d 2998 to 3309 330 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 312/312
(100 %)
0 diff
(100 %id)
BM980132 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 2999 to 3300 320 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 302/302
(100 %)
0 diff
(100 %id)
AI341783 pooled germ cell tumors .d 3001 to 3300 300 to 1       300/300
(100 %)
0 diff
(100 %id)
CA306005 Alveolar Macrophage, lung .d 3002 to 3300 317 to 19   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 299/299
(100 %)
0 diff
(100 %id)
AI201796 anaplastic oligodendroglioma, brain .d 3003 to 3309 307 to 1       307/307
(100 %)
0 diff
(100 %id)
BQ773903 Chondrosarcoma Grade II, Left Pelvis .d 3004 to 3309 324 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 306/306
(100 %)
0 diff
(100 %id)
CK724947 Chondrosarcoma, Left Pubic Bone .d 3005 to 3309 323 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 305/305
(100 %)
0 diff
(100 %id)
AW589571 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 3008 to 3309 302 to 1       302/302
(100 %)
0 diff
(100 %id)
BG055942 anaplastic oligodendroglioma, brain .d 3008 to 3302 295 to 1       295/295
(100 %)
0 diff
(100 %id)
BU624532 cell lines, Enchondroma .d 3011 to 3318 308 to 1       308/308
(100 %)
0 diff
(100 %id)
BX395876 Placenta Cot 25-normalized .d 3017 to 3324 1 to 308       308/308
(100 %)
0 diff
(100 %id)
W68074 heart .d 3020 to 3325 321 to 16   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 306/306
(100 %)
7 diff
(97.8 %id)
T36177 thyroid gland .d 3020 to 3300 1 to 281       281/281
(100 %)
0 diff
(100 %id)
AW960606   .d 3021 to 3300 1 to 280   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 280/280
(100 %)
0 diff
(100 %id)
T31857 colon, epididymis .d 3026 to 3300 1 to 275       275/275
(100 %)
0 diff
(100 %id)
AI468714 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3044 to 3309 266 to 1       266/266
(100 %)
0 diff
(100 %id)
AI014786   .d 3051 to 3304 254 to 1       254/254
(100 %)
0 diff
(100 %id)
AI369041 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 3052 to 3317 266 to 1       266/266
(100 %)
0 diff
(100 %id)
AI203761 lung .d 3081 to 3318 238 to 1       238/238
(100 %)
0 diff
(100 %id)
AW055037 brain, glioblastoma (pooled) .d 3104 to 3325 222 to 1       222/222
(100 %)
0 diff
(100 %id)
C20591   .d 3113 to 3317 1 to 206       206/206
(100 %)
1 diff
(99.6 %id)
D25759   .d 3113 to 3312 1 to 200     Submitted on the opposite strand 200/200
(100 %)
0 diff
(100 %id)
AA401089 ovarian tumor, ovary .d 3116 to 3296 181 to 1       181/181
(100 %)
0 diff
(100 %id)
AI709020 colon .d 3143 to 3296 154 to 1       154/154
(100 %)
0 diff
(100 %id)
CB144152 Liver .d 3197 to 3324 136 to 12     Submitted on the opposite strand 125/136
(91 %)
0 diff
(100 %id)
CA336664 posterior rhombomeres 5-8 (4 pooled) .d 3234 to 3300 1 to 67   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 67/67
(100 %)
0 diff
(100 %id)
BP311238 brain .e 1 to 589 1 to 589 L166M tiling clone,   589/589
(100 %)
4 diff
(99.4 %id)
AK296517 thalamus .f 1 to 1530 1 to 1530 exact tiling clone,   1530/1530
(100 %)
0 diff
(100 %id)
DA414526 thalamus .f 2 to 566 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BX647808 human retina .g 1 to 3128 1 to 3128 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 3128/3128
(100 %)
1 diff
(100.0 %id)
DA493157 brain .g 18 to 601 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CN414049 embryonic stem cells, cell lines H1, H7, andH9 .h 1 to 709 1 to 710 exact tiling clone,   710/710
(100 %)
1 diff
(99.9 %id)
DA922623 small intestine .i 1 to 292 3 to 294   tiling clone, capped   293/293
(100 %)
0 diff
(100 %id)
DA591170 lung .i 23 to 494 2 to 475   capped   474/474
(100 %)
3 diff
(99.4 %id)
CN414052 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 67 to 537 1 to 471 exact tiling clone,   471/471
(100 %)
0 diff
(100 %id)
BE693871 breast .j-u 1 to 345 1 to 345 R7G S30F tiling clone,   345/347
(99 %)
6 diff
(98.3 %id)
AA326024 brain, cerebellum .k 1 to 291 2 to 294 N44X A45R S46F A47S T48N ... tiling clone,   294/294
(100 %)
2 diff
(99.4 %id)
BF368320 placenta_normal .l-u 1 to 270 1 to 265 L2R R3L F4G G5E E7F ... tiling clone,   265/273
(97 %)
6 diff
(97.9 %id)
BF833521 head_neck .l-u 7 to 268 279 to 19 exact tiling clone, Submitted on the opposite strand 261/284
(91 %)
0 diff
(100 %id)
BE074108 breast Gene RAB5B, variant not shown              
BF903620 marrow Gene RAB5B, variant not shown              
CN277425 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene RAB5B, variant not shown              
H00474 placenta Gene RAB5B, variant not shown              
H00528 placenta Gene RAB5B, variant not shown              
AA522630 metastatic prostate bone lesion Gene RAB5B, variant not shown              
TI_45216476   Gene RAB5B, variant not shown         Suspected internal deletion, this clone was ignored    
TI_154101450   Gene RAB5B, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB224028 trachea Gene RAB5B, variant not shown       capped      
DB349576 trachea Gene RAB5B, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI