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Gene RAB3IL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
85 supporting clones for gene RAB3IL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR004757 placenta .a 1 to 652 1 to 652   tiling clone,   652/653
(99 %)
5 diff
(99.3 %id)
BF984202 duodenal adenocarcinoma, cell line, small intestine .a 54 to 409 16 to 371       356/372
(95 %)
9 diff
(97.6 %id)
BG331251 large cell carcinoma, lung .a 59 to 569 1 to 520       520/698
(74 %)
25 diff
(96.5 %id)
BM546223 ovary (pool of 3) .a 60 to 815 15 to 783       769/1166
(65 %)
30 diff
(97.5 %id)
AL518260 brain, neuroblastoma, neuroblastoma cells .a 65 to 1127 1 to 1047       1047/1054
(99 %)
24 diff
(97.8 %id)
BQ946081 leiomyosarcoma, uterus .a 69 to 908 9 to 852       844/931
(90 %)
20 diff
(97.9 %id)
BC022239 Bone, osteosarcoma .a 87 to 2369 1 to 2283 exact tiling clone, available from MGC, AAA   2283/2283
(100 %)
2 diff
(100.0 %id)
NM_013401.2   .a 87 to 2369 1 to 2283 exact RefSeq, AAA   2283/2283
(100 %)
2 diff
(100.0 %id)
BG027422 Bone, osteosarcoma, cell line .a 88 to 380 1 to 291       291/291
(100 %)
5 diff
(98.3 %id)
BM547343 ovary (pool of 3) .a 100 to 902 1 to 810       810/1100
(73 %)
15 diff
(98.7 %id)
AL547133 placenta, Placenta Cot 25-normalized .a 119 to 1027 1 to 871       735/961
(76 %)
44 diff
(95.5 %id)
BM547524 ovary (pool of 3) .a 121 to 847 1 to 727       727/1169
(62 %)
3 diff
(99.8 %id)
CR624851 Placenta Cot 25-normalized .a 123 to 1924 1 to 1802 exact tiling clone,   1802/1802
(100 %)
0 diff
(100 %id)
AL552338 placenta, Placenta Cot 25-normalized .a 123 to 1030 1 to 907       907/928
(97 %)
10 diff
(99.0 %id)
BX386355 Placenta Cot 25-normalized .a 123 to 1105 1 to 980       980/980
(100 %)
42 diff
(95.8 %id)
BI918495 brain .a 123 to 881 1 to 758       758/758
(100 %)
29 diff
(96.2 %id)
TI_57238612   .a 123 to 881 1 to 758       758/758
(100 %)
29 diff
(96.2 %id)
BI752477 brain .a 125 to 886 1 to 779       776/779
(99 %)
60 diff
(92.3 %id)
TI_57219156   .a 128 to 886 36 to 811       773/811
(95 %)
66 diff
(91.9 %id)
TI_1948093252   .a 242 to 1094 124 to 987       864/1447
(59 %)
36 diff
(97.6 %id)
TI_1948093403   .a 242 to 1029 126 to 909       784/1419
(55 %)
24 diff
(98.4 %id)
CV025023 mixed .a 245 to 840 1 to 596       596/596
(100 %)
1 diff
(99.9 %id)
BM913922 astrocytoma grade IV, cell line, brain .a 335 to 1018 22 to 709       688/1177
(58 %)
34 diff
(97.2 %id)
BF912967 uterus_tumor .a 382 to 724 18 to 359       342/359
(95 %)
16 diff
(95.6 %id)
AF084557   .a 449 to 2353 1 to 1905       1905/1905
(100 %)
1 diff
(100.0 %id)
BI761951 pooled colon, kidney, stomach .a 515 to 1175 1 to 662       662/662
(100 %)
1 diff
(99.9 %id)
TI_57151008   .a 515 to 1316 36 to 840       805/948
(84 %)
18 diff
(98.2 %id)
BU173463 leiomyosarcoma, uterus .a 547 to 1310 1 to 766       766/896
(85 %)
7 diff
(99.3 %id)
CD624990   .a 552 to 1379 16 to 841       826/841
(98 %)
14 diff
(98.4 %id)
BG252741 adenocarcinoma, cell line, Liver .a 554 to 1316 1 to 759       759/1046
(72 %)
24 diff
(97.8 %id)
BQ918451 large cell carcinoma, lung .a 615 to 1536 39 to 964       929/965
(96 %)
31 diff
(96.8 %id)
BM551804 astrocytoma grade IV, cell line, brain .a 642 to 1719 1 to 1089       1089/1096
(99 %)
38 diff
(96.6 %id)
BG422676 Kidney, renal cell adenocarcinoma .a 711 to 1511 1 to 793       793/961
(82 %)
40 diff
(95.9 %id)
CD624991   .a 809 to 1470 663 to 1       663/663
(100 %)
1 diff
(99.9 %id)
AL561727 brain, neuroblastoma, neuroblastoma cells .a 1316 to 2347 1032 to 1       1032/1034
(99 %)
19 diff
(98.2 %id)
AL572202 placenta, Placenta Cot 25-normalized .a 1337 to 2333 989 to 1       989/1000
(98 %)
86 diff
(91.4 %id)
BC051820 Colon, Kidney, Stomach, adult, whole pooled .b 1 to 2124 1 to 2124 exact tiling clone, available from MGC, AAA   2124/2124
(100 %)
3 diff
(99.9 %id)
BI765652 pooled colon, kidney, stomach .b 1 to 761 28 to 794       767/794
(96 %)
16 diff
(98.0 %id)
TI_57150797   .b 1 to 761 28 to 794       767/794
(96 %)
16 diff
(98.0 %id)
EL734688 mixed .b 78 to 703 1 to 626       626/626
(100 %)
0 diff
(100 %id)
BM738157 Ascites, stomach .b 619 to 1043 1 to 425       425/425
(100 %)
3 diff
(99.3 %id)
BX391757 Placenta Cot 25-normalized .b 657 to 1278 619 to 1       621/621
(100 %)
4 diff
(99.4 %id)
BM555030 duodenal adenocarcinoma, cell line, small intestine .b 662 to 1543 1 to 889       889/1047
(84 %)
15 diff
(98.6 %id)
AA431374.
matches multiple genes
  .b 768 to 1116 1 to 348     also hits gene JMJD8 348/348
(100 %)
2 diff
(99.5 %id)
BM712564 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 977 to 1342 1 to 366       366/367
(99 %)
1 diff
(99.8 %id)
CD515806 White Matter .b 990 to 1896 1 to 913       913/981
(93 %)
22 diff
(97.8 %id)
BG819820 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1016 to 1609 1 to 595       595/595
(100 %)
2 diff
(99.7 %id)
BQ707891 Spleen .b 1021 to 1541 1 to 524       524/1037
(50 %)
17 diff
(98.4 %id)
BX386354 Placenta Cot 25-normalized .b 1077 to 2089 1010 to 1       1010/1014
(99 %)
54 diff
(94.7 %id)
AL575660 placenta, Placenta Cot 25-normalized .b 1132 to 2085 959 to 6       954/963
(99 %)
0 diff
(100 %id)
CR615485 T cells (Jurkat cell line) Cot10-normalized .b 1157 to 2086 1 to 930       930/930
(100 %)
0 diff
(100 %id)
BX383340   .b 1157 to 2076 1 to 917       917/917
(100 %)
7 diff
(99.3 %id)
BG912598 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1236 to 1730 1 to 495       495/496
(99 %)
1 diff
(99.8 %id)
TI_149288294   .b 1435 to 2257 885 to 72   AAA   814/975
(83 %)
30 diff
(97.0 %id)
TI_159688573   .b 1478 to 2124 813 to 174   AAA   640/1039
(61 %)
0 diff
(100 %id)
BM696194 eye, human retina .b 1497 to 1881 1 to 385   fully sequenced,   385/385
(100 %)
1 diff
(99.8 %id)
CD517820 White Matter .b 1517 to 2069 70 to 627       558/1222
(45 %)
14 diff
(98.9 %id)
H49369 liver and spleen .b 1542 to 1711 1 to 169       169/169
(100 %)
1 diff
(99.5 %id)
BM676305 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1597 to 2124 547 to 19   AAA   529/529
(100 %)
1 diff
(99.9 %id)
AI243129 pooled .b 1729 to 2124 413 to 16   AAA   398/438
(90 %)
22 diff
(95.0 %id)
BU629471 cell lines, Chondrosarcoma .b 1735 to 2124 408 to 19   AAA   390/390
(100 %)
0 diff
(100 %id)
BM970260 lung .b 1740 to 2257 536 to 19   tiling clone, AAA   518/518
(100 %)
2 diff
(99.7 %id)
AI597699 Prostate .b 1746 to 2126 397 to 17   tiling clone, AAA   381/381
(100 %)
0 diff
(100 %id)
AI761942 Kidney .b 1748 to 2124 390 to 14   AAA   377/377
(100 %)
1 diff
(99.8 %id)
AI025092   .b 1750 to 2125 407 to 32       376/407
(92 %)
0 diff
(100 %id)
AA971785 pooled .b 1769 to 2125 358 to 3       356/358
(99 %)
0 diff
(100 %id)
AA564746 germ cell tumor .b 1770 to 2126 357 to 1       357/357
(100 %)
0 diff
(100 %id)
AA320319 adipose tissue, white .b 1777 to 2032 1 to 256       256/256
(100 %)
1 diff
(99.7 %id)
AW954966   .b 1778 to 2124 1 to 347   AAA   347/347
(100 %)
1 diff
(99.8 %id)
BM543736 ovary (pool of 3) .b 1790 to 2124 1 to 335   AAA   335/335
(100 %)
1 diff
(99.8 %id)
BG528129 lung, mucoepidermoid carcinoma .b 1821 to 2108 341 to 622       515/904
(56 %)
12 diff
(98.7 %id)
BM664470 eye, human retina .b 1851 to 2124 292 to 19   fully sequenced, AAA   274/274
(100 %)
1 diff
(99.7 %id)
AA865861 pooled germ cell tumors .b 1853 to 2130 297 to 20   AAA   278/278
(100 %)
2 diff
(99.3 %id)
CB049253 Prostate .b 1880 to 2124 10 to 254   AAA   245/254
(96 %)
6 diff
(97.7 %id)
AI669433 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 1925 to 2124 218 to 19   AAA   200/200
(100 %)
0 diff
(100 %id)
AI795962 Kidney .b 1970 to 2124 168 to 14   AAA   155/155
(100 %)
1 diff
(99.4 %id)
AI744837 ovary, tumor, 5 pooled (see description) .b 1972 to 2125 158 to 5       154/158
(97 %)
0 diff
(100 %id)
TI_57147283   .c 1 to 800 35 to 844 G22W L23S A24C S25K M26H ... tiling clone,   810/902
(89 %)
25 diff
(97.3 %id)
BI764816 pooled colon, kidney, stomach .c 2 to 800 1 to 809 G22W L23S A24C S25K M26H ... tiling clone,   809/867
(93 %)
22 diff
(97.5 %id)
BI829648 brain, medulla .d 1 to 189 1 to 189       189/189
(100 %)
0 diff
(100 %id)
TI_57176003   .d 1 to 831 69 to 905 exact tiling clone,   837/906
(92 %)
16 diff
(98.3 %id)
T70843 liver and spleen .e 1 to 789 1 to 391 R16X T17P C18A R19A H20T ... tiling clone, Suspected internal deletion 391/392
(99 %)
24 diff
(93.9 %id)
BX094268 liver and spleen .e 3 to 1174 1 to 762 E84L Q85W A86P D87S T88C ... tiling clone, AAA Suspected internal deletion 762/762
(100 %)
0 diff
(100 %id)
T70580 liver and spleen .e 881 to 1169 291 to 2   tiling clone, Suspected internal deletion 290/292
(99 %)
0 diff
(100 %id)
BI523712 pooled lung and spleen .f 1 to 802 1 to 798 G19A W20G Q21R V22S T23H ... tiling clone, fully sequenced,   798/798
(100 %)
13 diff
(98.4 %id)
TI_44159348   .f 2 to 802 65 to 861 G19A W20G Q21R V22S T23H ... fully sequenced,   797/861
(92 %)
17 diff
(98.1 %id)
AA379328 skin .f 53 to 335 284 to 1   tiling clone, Submitted on the opposite strand 284/285
(99 %)
1 diff
(99.7 %id)
BI524861 pooled lung and spleen .f 772 to 1440 682 to 1   tiling clone, fully sequenced,   682/682
(100 %)
26 diff
(96.2 %id)
TI_44159349   .f 772 to 1440 682 to 1   fully sequenced,   682/682
(100 %)
26 diff
(96.2 %id)
CB215684 normal endometrium, late proliferativephase, cycle day 13, uterus .g 1 to 636 1 to 636 exact tiling clone,   636/636
(100 %)
0 diff
(100 %id)
AI078157   Gene RAB3IL1, variant not shown         Suspected internal deletion, this clone was ignored    
BQ446321 Knee, Osteoarthritic Cartilage Gene RAB3IL1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI