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Gene RAB3CTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
51 supporting clones for gene RAB3C back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB485923 hypothalamus .a 1 to 422 1 to 421   tiling clone,   421/440
(95 %)
4 diff
(99.1 %id)
BX112487 placenta .a 16 to 511 1 to 496       496/496
(100 %)
0 diff
(100 %id)
CN311359 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 23 to 666 1 to 645       645/679
(94 %)
1 diff
(99.9 %id)
BI670306 brain, hypothalamus .a 36 to 860 6 to 832 D28Y M195I S196V E197R S198E ...     827/832
(99 %)
12 diff
(98.6 %id)
TI_44345782   .a 36 to 860 86 to 912 D28Y M195I S196V E197R S198E ...     827/912
(90 %)
12 diff
(98.7 %id)
BP361193 thalamus .a 36 to 555 1 to 521       521/583
(89 %)
6 diff
(99.0 %id)
AI634523 carcinoid, lung .a 40 to 555 26 to 542     Submitted on the opposite strand 517/608
(85 %)
10 diff
(98.4 %id)
AI871786 carcinoid, lung .a 40 to 555 26 to 542     Submitted on the opposite strand 517/606
(85 %)
11 diff
(98.2 %id)
AW293673   .a 40 to 555 25 to 541     Submitted on the opposite strand 517/551
(93 %)
11 diff
(98.1 %id)
DR002166 fetal brain .a 42 to 555 1 to 517       517/571
(90 %)
11 diff
(98.1 %id)
AY026936   .a 47 to 977 1 to 931 exact     931/931
(100 %)
1 diff
(99.9 %id)
AL706809 human skeletal muscle .a 48 to 718 1 to 674       671/674
(99 %)
13 diff
(98.1 %id)
BP310444 brain .a 58 to 555 1 to 499       499/588
(84 %)
6 diff
(99.0 %id)
BP362717 thalamus .a 58 to 555 1 to 498       498/582
(85 %)
7 diff
(98.8 %id)
AA121805   .a 60 to 422 1 to 371       371/404
(91 %)
17 diff
(95.8 %id)
AW612242 carcinoid, lung .a 68 to 512 1 to 445     Submitted on the opposite strand 445/445
(100 %)
0 diff
(100 %id)
BC013033 Lung, small cell carcinoma .a 73 to 1080 1 to 1008 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1008/1008
(100 %)
0 diff
(100 %id)
NM_138453.2   .a 73 to 1080 1 to 1008 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 1008/1008
(100 %)
0 diff
(100 %id)
BP360270 thalamus .a 76 to 657 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BE263328 lung, small cell carcinoma .a 92 to 760 1 to 669       669/718
(93 %)
8 diff
(98.9 %id)
AI124602 brain, pooled frontal lobe .a 97 to 538 1 to 442     Submitted on the opposite strand 442/442
(100 %)
0 diff
(100 %id)
EL733389 mixed .a 170 to 837 1 to 666       666/670
(99 %)
6 diff
(99.2 %id)
TI_1948242230   .a 411 to 852 1042 to 600     Submitted on the opposite strand 443/1314
(33 %)
9 diff
(99.4 %id)
AI278619 placenta .a 413 to 1081 671 to 3       669/671
(99 %)
0 diff
(100 %id)
BF438170 carcinoid, lung .a 416 to 980 572 to 8       565/572
(98 %)
0 diff
(100 %id)
BX375795 Neuroblastoma Cot 25-normalized .a 417 to 979 1 to 557       557/557
(100 %)
11 diff
(98.1 %id)
BP201967 amygdala .a 451 to 1032 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AA121806   .a 548 to 983 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
BX394661 Neuroblastoma Cot 25-normalized .b 1 to 428 1 to 428   tiling clone, fully sequenced, to resequence,   428/428
(100 %)
2 diff
(99.6 %id)
BX394660 Neuroblastoma Cot 25-normalized .b 423 to 958 536 to 1   tiling clone, fully sequenced, to resequence,   536/536
(100 %)
4 diff
(99.3 %id)
TI_1948241738   .b 546 to 858 921 to 609     Submitted on the opposite strand 313/1371
(22 %)
0 diff
(100 %id)
TI_1948241739   .b 546 to 858 920 to 609     Submitted on the opposite strand 312/1305
(23 %)
1 diff
(100.0 %id)
TI_1948242229   .b 546 to 858 915 to 603   tiling clone, Submitted on the opposite strand 313/1421
(22 %)
1 diff
(100.0 %id)
CK904542 Islets of Langerhans, Pancreas .b 642 to 1196 1 to 556       556/556
(100 %)
2 diff
(99.7 %id)
BX281268 brain, hypothalamus .b 671 to 1087 444 to 28     Submitted on the opposite strand 417/452
(92 %)
0 diff
(100 %id)
AI364134 anaplastic oligodendroglioma, brain .b 671 to 986 332 to 17   AAA   316/319
(99 %)
1 diff
(99.7 %id)
BM054844 Islets of Langerhans, Pancreas .b 671 to 1194 14 to 538   tiling clone,   525/538
(97 %)
6 diff
(98.9 %id)
BM069684 Islets of Langerhans, Pancreas .b 671 to 1179 14 to 523       510/523
(97 %)
6 diff
(98.9 %id)
BG199104   .b 672 to 1086 1 to 415   AAA   415/415
(100 %)
6 diff
(98.6 %id)
BG181521   .b 673 to 905 1 to 233       233/233
(100 %)
0 diff
(100 %id)
BG199627   .b 708 to 1441 747 to 12   tiling clone, Submitted on the opposite strand 736/853
(86 %)
0 diff
(100 %id)
C21251   .b 779 to 986 1 to 207       207/207
(100 %)
1 diff
(99.6 %id)
BM054660 Islets of Langerhans, Pancreas .b 928 to 1457 524 to 1   tiling clone,   524/524
(100 %)
4 diff
(99.3 %id)
BG055348 carcinoid, lung .b 992 to 1454 470 to 14   AAA   457/457
(100 %)
9 diff
(98.1 %id)
DB554861 hypothalamus .b 1009 to 1458 1 to 454   tiling clone, Submitted on the opposite strand 454/454
(100 %)
5 diff
(98.9 %id)
BM069462 Islets of Langerhans, Pancreas .b 1262 to 1457 196 to 1       196/196
(100 %)
1 diff
(99.5 %id)
CK904541 Islets of Langerhans, Pancreas .b 1277 to 1457 181 to 1       181/181
(100 %)
1 diff
(99.5 %id)
DA109622 cerebellum .b 1418 to 1990 2 to 574   tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
AA017046 eye, retina .b 1733 to 1837 1 to 105       105/109
(96 %)
3 diff
(97.3 %id)
DA315621 hippocampus .b 2903 to 3440 2 to 541   tiling clone, capped   540/540
(100 %)
4 diff
(99.3 %id)
AA017066 eye, retina .b 3032 to 3508 501 to 3   tiling clone,   499/502
(99 %)
0 diff
(100 %id)
DA219787 brain .b 3128 to 3668 2 to 540   tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
AA868463   .c 1 to 590 592 to 4 C10S L11F Q12R A13Q A14P ... tiling clone,   589/592
(99 %)
3 diff
(99.5 %id)
BM683101 eye, fetal eye .d-u 1 to 688 706 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 688/688
(100 %)
0 diff
(100 %id)
BP230351 brain .e 1 to 583 1 to 582 E51G tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI