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Gene RAB22ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
359 supporting clones for gene RAB22A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA758198   .a 1463 to 2036 574 to 1       574/574
(100 %)
0 diff
(100 %id)
AA769950   .a 1412 to 1833 425 to 4       422/425
(99 %)
0 diff
(100 %id)
AA759119   .a 1684 to 2036 353 to 1       353/353
(100 %)
7 diff
(98.1 %id)
AA758729   .a 1417 to 1833 420 to 4       417/420
(99 %)
0 diff
(100 %id)
AA095371   .a 592 to 770 1 to 177       177/209
(84 %)
13 diff
(93.8 %id)
AA332989 Embryo, 8 weeks .d-u 664 to 874 1 to 213       213/213
(100 %)
4 diff
(98.2 %id)
AV702713 adrenal gland .a 1663 to 2033 1 to 371   AAA   371/371
(100 %)
0 diff
(100 %id)
AF091034 colon carcinoma .a 39 to 1766 1 to 1728       1728/1728
(100 %)
10 diff
(99.5 %id)
AF125104   .a 859 to 2031 2140 to 967     Submitted on the opposite strand 1174/2591
(45 %)
0 diff
(100 %id)
AI903061 breast .b 596 to 1123 1 to 528   tiling clone,   528/534
(98 %)
4 diff
(99.3 %id)
AK054767 cerebellum .a 5808 to 7803 1 to 1994   available from FLJ,   1994/1994
(100 %)
4 diff
(99.8 %id)
AK091180 tongue, tumor tissue .a 266 to 2546 1 to 2281   available from FLJ,   2281/2281
(100 %)
8 diff
(99.7 %id)
AW365034 denis_drash .a 1574 to 1736 1 to 163       163/163
(100 %)
3 diff
(98.2 %id)
AW368543 head_neck .a 497 to 1072 604 to 22       583/604
(96 %)
10 diff
(98.4 %id)
AW374938 colon .d-u 687 to 912 1 to 228       228/228
(100 %)
11 diff
(95.2 %id)
AW859227 colon .d-u 749 to 1124 15 to 388       374/388
(96 %)
11 diff
(97.2 %id)
AW859636 colon .d-u 756 to 1114 1 to 357   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 357/357
(100 %)
12 diff
(96.7 %id)
AW970819   .d-u 1698 to 1995 302 to 5     Submitted on the opposite strand 298/302
(98 %)
0 diff
(100 %id)
BC015710 Uterus, leiomyosarcoma .a 95 to 1834 1 to 1740   tiling clone, available from MGC, AAA   1740/1740
(100 %)
0 diff
(100 %id)
BC063457 Colon, Kidney, Stomach, adult, whole pooled .a 36 to 1833 1 to 1798   available from MGC, AAA   1798/1798
(100 %)
0 diff
(100 %id)
BE093826 breast .e-u 329 to 706 1 to 378   tiling clone,   378/378
(100 %)
1 diff
(99.8 %id)
BE147936 head_neck .a 589 to 770 1 to 185       185/190
(97 %)
13 diff
(93.2 %id)
BE169191 head_neck .a 837 to 1063 252 to 26     Submitted on the opposite strand 227/252
(90 %)
0 diff
(100 %id)
BE169220 head_neck .a 837 to 1063 252 to 26     Submitted on the opposite strand 227/252
(90 %)
0 diff
(100 %id)
BE774830 uterus .d-u 159 to 586 428 to 2       427/474
(90 %)
0 diff
(100 %id)
BF095666 uterus_tumor .d-u 1410 to 1682 1 to 274       274/274
(100 %)
1 diff
(99.7 %id)
BF095740 uterus_tumor .d-u 1411 to 1682 272 to 1       272/290
(93 %)
5 diff
(98.3 %id)
BF149423 skin .a 632 to 1078 448 to 1       448/448
(100 %)
1 diff
(99.8 %id)
BF327182 breast_normal .a 1098 to 1334 240 to 5       236/240
(98 %)
0 diff
(100 %id)
BF331861 breast .a 920 to 1221 304 to 2       303/304
(99 %)
0 diff
(100 %id)
BF365818 nervous_tumor .a 393 to 786 1 to 395       395/395
(100 %)
6 diff
(98.5 %id)
BF752632 breast_normal .a 6479 to 6821 355 to 13     Submitted on the opposite strand 343/372
(92 %)
0 diff
(100 %id)
BF934736 nervous_tumor .b 551 to 917 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
BG196829   .a 763 to 1521 1 to 759       759/759
(100 %)
8 diff
(99.0 %id)
BG461740   .a 3415 to 3981 1 to 582   tiling clone,   582/588
(98 %)
31 diff
(94.8 %id)
BQ316058 colon .a 312 to 738 429 to 1       429/429
(100 %)
6 diff
(98.7 %id)
DA055460 cerebellum .a 5809 to 6365 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DB296537 cerebellum .a 7265 to 7803 541 to 1       541/541
(100 %)
4 diff
(99.3 %id)
DA110755 cerebellum .a 3845 to 4090 2 to 248   capped   247/247
(100 %)
2 diff
(99.2 %id)
DA145162 amygdala .a 6184 to 6757 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA155190 amygdala .a 6269 to 6836 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA243569 brain .a 4852 to 5431 2 to 582   capped   581/581
(100 %)
3 diff
(99.5 %id)
DA249499 brain .a 3517 to 4090 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA288741 hippocampus .a 6368 to 6911 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA301659 hippocampus .a 4402 to 4945 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DB308051 hippocampus .a 7278 to 7804 533 to 5       529/533
(99 %)
0 diff
(100 %id)
DA316627 hippocampus .a 3688 to 4244 2 to 558   tiling clone, capped   557/557
(100 %)
2 diff
(99.7 %id)
DA317564 hippocampus .a 5045 to 5592 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA389016 thalamus .a 5866 to 6458 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA404250 thalamus .a 4714 to 5280 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA415570 thalamus .a 5298 to 5891 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
BT007046   .a 282 to 864 1 to 583       583/585
(99 %)
1 diff
(99.9 %id)
BX102853 liver and spleen .d-u 602 to 1097 1 to 496       496/496
(100 %)
0 diff
(100 %id)
BX113476 placenta .a 1116 to 1885 1 to 769       769/769
(100 %)
1 diff
(99.9 %id)
F01357 brain, total brain .a 1612 to 1833 222 to 1       222/222
(100 %)
1 diff
(99.6 %id)
F05105 brain, total brain .a 403 to 642 1 to 240       240/240
(100 %)
0 diff
(100 %id)
F07898 brain, total brain .a 259 to 577 1 to 318       318/318
(100 %)
1 diff
(99.7 %id)
Z40973 brain, total brain .a 1512 to 1827 316 to 1       316/316
(100 %)
0 diff
(100 %id)
F04725 brain, total brain .a 1565 to 1827 263 to 1       263/263
(100 %)
0 diff
(100 %id)
F08512 brain, total brain .a 260 to 566 1 to 307       307/307
(100 %)
0 diff
(100 %id)
Z41567 brain, total brain .d-u 1706 to 2001 296 to 1       296/296
(100 %)
1 diff
(99.7 %id)
Z45949 brain, total brain .d-u 456 to 785 1 to 330       330/330
(100 %)
1 diff
(99.7 %id)
C21443   .a 1568 to 1787 8 to 227       220/227
(96 %)
6 diff
(97.4 %id)
BP204123 coronary artery .a 675 to 1255 1 to 580       580/580
(100 %)
6 diff
(99.0 %id)
BP205185 coronary artery .a 1192 to 1769 1 to 576       576/581
(99 %)
18 diff
(97.0 %id)
CN276883 embryonic stem cells, DMSO-treated H9 cellline .d-u 1059 to 1732 1 to 674 exact     674/676
(99 %)
1 diff
(99.9 %id)
DA432623 colon .a 42 to 458 2 to 419   capped   418/418
(100 %)
1 diff
(99.8 %id)
CR610918 HeLa cells Cot 25-normalized .a 75 to 1810 1 to 1736       1736/1736
(100 %)
0 diff
(100 %id)
BX441328 brain, fetal brain .b 1 to 1032 1 to 1021 G3R P32R P33L L34C R35A ... tiling clone,   1021/1021
(100 %)
14 diff
(98.7 %id)
BX413168 brain, fetal brain .b 1084 to 1768 716 to 30   tiling clone,   687/810
(84 %)
0 diff
(100 %id)
AL538045 brain, fetal brain .a 25 to 1136 9 to 1110 P189X C193A     1102/1110
(99 %)
22 diff
(98.1 %id)
AL567117 brain, fetal brain .a 1164 to 2267 1089 to 1       1089/1127
(96 %)
28 diff
(97.6 %id)
AL539118 brain, fetal brain .a 880 to 1774 906 to 20   fully sequenced,   887/906
(97 %)
32 diff
(96.5 %id)
AL539119 brain, fetal brain .a 41 to 910 1 to 869 L11X D28N M73X E91X W99X ... fully sequenced,   869/869
(100 %)
24 diff
(97.3 %id)
AL557604 T cells (Jurkat cell line), T cells from T cell leukemia .a 65 to 1073 1 to 985   fully sequenced,   798/798
(100 %)
45 diff
(94.4 %id)
AL579600 T cells (Jurkat cell line), T cells from T cell leukemia .a 1067 to 1967 897 to 1   fully sequenced,   897/897
(100 %)
22 diff
(97.6 %id)
BX372167   .a 395 to 1181 793 to 1       793/793
(100 %)
21 diff
(97.4 %id)
BX401201   .a 1000 to 1810 811 to 1       811/811
(100 %)
13 diff
(98.4 %id)
BX401202   .a 75 to 834 1 to 759       759/759
(100 %)
1 diff
(99.9 %id)
DA438501 tongue, tumor tissue .a 267 to 848 2 to 583   capped   582/582
(100 %)
6 diff
(99.0 %id)
DB313526 tongue, tumor tissue .a 2018 to 2546 530 to 1       530/530
(100 %)
2 diff
(99.7 %id)
CV023277 mixed .a 282 to 872 1 to 590 *195C     590/638
(92 %)
4 diff
(99.4 %id)
BX477045   .b 1645 to 2203 1 to 559   tiling clone,   559/559
(100 %)
1 diff
(99.9 %id)
AL707403 human skeletal muscle .a 2422 to 3101 1 to 680   tiling clone,   680/680
(100 %)
1 diff
(99.9 %id)
BX482784   .a 5518 to 6046 1 to 530   tiling clone,   530/530
(100 %)
2 diff
(99.7 %id)
AL121369 melanoma (MeWo cell line) .a 5024 to 5534 1 to 513       513/513
(100 %)
2 diff
(99.7 %id)
BX645410   .d-u 1485 to 2004 540 to 21   tiling clone, Submitted on the opposite strand 520/540
(96 %)
0 diff
(100 %id)
DA491715 brain .a 5052 to 5628 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
CD672277 eye, Iris .a 640 to 1193 1 to 554       554/554
(100 %)
0 diff
(100 %id)
FN047533 breast carcinoma .a 865 to 975 111 to 1     Submitted on the opposite strand 111/111
(100 %)
1 diff
(99.1 %id)
FN090674 breast carcinoma .a 1724 to 1826 1 to 104       104/109
(95 %)
2 diff
(98.2 %id)
FN090928 breast carcinoma .a 843 to 939 97 to 1     Submitted on the opposite strand 97/97
(100 %)
0 diff
(100 %id)
FN124991 breast carcinoma .a 2154 to 2281 1 to 127       127/127
(100 %)
1 diff
(99.3 %id)
FN131707 breast carcinoma .a 1886 to 1999 1 to 110       110/110
(100 %)
4 diff
(96.4 %id)
DB452461 testis .a 20 to 500 1 to 481       481/481
(100 %)
0 diff
(100 %id)
DB462278 testis .a 20 to 487 1 to 468       468/468
(100 %)
0 diff
(100 %id)
DB527714 testis .a 1380 to 1834 1 to 455     Submitted on the opposite strand 455/455
(100 %)
0 diff
(100 %id)
DB533250 hippocampus .a 2504 to 2893 1 to 392     Submitted on the opposite strand 392/392
(100 %)
7 diff
(98.3 %id)
DB502657 hypothalamus .a 1567 to 2034 1 to 468       468/468
(100 %)
0 diff
(100 %id)
DB573885 hypothalamus .a 2159 to 2616 1 to 458   tiling clone, Submitted on the opposite strand 458/458
(100 %)
1 diff
(99.8 %id)
DA559280   .a 6382 to 6902 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
BY796673 eye .d-u 1164 to 1714 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BP250931 hippocampus .a 734 to 1316 1 to 583       583/583
(100 %)
11 diff
(98.2 %id)
BP251565 hippocampus .a 1457 to 2038 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA601919   .a 6587 to 7155 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
CN484783 eye .d-u 155 to 794 1 to 640   tiling clone,   640/640
(100 %)
3 diff
(99.6 %id)
T23564   .a 1506 to 1835 332 to 3       330/332
(99 %)
0 diff
(100 %id)
R39153 whole brain .d-u 1615 to 2001 401 to 11   AAA   391/400
(97 %)
13 diff
(96.8 %id)
R53346 whole brain .a 404 to 824 1 to 431       428/432
(99 %)
23 diff
(94.7 %id)
R53949 whole brain .a 1450 to 1833 408 to 14   AAA   395/438
(90 %)
12 diff
(97.3 %id)
H11062 whole brain .d-u 1538 to 2001 485 to 11   AAA   475/476
(99 %)
34 diff
(92.9 %id)
H11150 whole brain .d-u 456 to 874 1 to 425       425/480
(88 %)
8 diff
(98.4 %id)
H12005 whole brain .a 710 to 1120 1 to 417       417/417
(100 %)
14 diff
(96.7 %id)
H15351 whole brain .d-u 457 to 904 1 to 456       456/590
(77 %)
14 diff
(97.7 %id)
H23259 whole brain .a 1502 to 1834 355 to 13   AAA   343/380
(90 %)
17 diff
(95.6 %id)
H23370 whole brain .a 404 to 801 1 to 397       397/397
(100 %)
6 diff
(98.5 %id)
R01399 liver and spleen .d-u 909 to 1152 1 to 249       249/249
(100 %)
6 diff
(97.6 %id)
R63940 placenta .a 1753 to 2031 279 to 1       279/279
(100 %)
2 diff
(99.3 %id)
R64036 placenta .a 1113 to 1572 1 to 462       462/464
(99 %)
7 diff
(98.5 %id)
R76965 placenta .a 2001 to 2455 1 to 458       458/463
(98 %)
7 diff
(98.5 %id)
R78918 placenta .a 1575 to 2015 446 to 1       446/448
(99 %)
13 diff
(97.1 %id)
R79015 placenta .a 1113 to 1260 1 to 147       147/148
(99 %)
2 diff
(98.7 %id)
R93637 liver and spleen .a 6043 to 6319 1 to 285   fully sequenced,   285/285
(100 %)
4 diff
(98.6 %id)
R93638 liver and spleen .a 6289 to 6564 294 to 1   fully sequenced,   294/294
(100 %)
17 diff
(94.3 %id)
N54527 liver and spleen .d-u 1627 to 1997 379 to 2       378/478
(79 %)
0 diff
(100 %id)
N76230 liver and spleen .d-u 654 to 1051 1 to 399       399/437
(91 %)
9 diff
(98.0 %id)
H87195 placenta .a 1498 to 1813 330 to 2       329/331
(99 %)
0 diff
(100 %id)
H87704 placenta .a 697 to 1053 31 to 391       361/391
(92 %)
11 diff
(97.2 %id)
N22693 melanocyte .a 1406 to 1815 422 to 1   fully sequenced,   422/422
(100 %)
10 diff
(97.7 %id)
N31167 melanocyte .a 1185 to 1436 1 to 252   fully sequenced,   252/252
(100 %)
1 diff
(99.7 %id)
N31480 melanocyte .d-u 1593 to 2003 413 to 1       413/414
(99 %)
2 diff
(99.6 %id)
N42789 melanocyte .d-u 923 to 1407 1 to 493       493/494
(99 %)
14 diff
(97.2 %id)
N69505 cochlea, ear .d-u 1546 to 2002 467 to 5       463/478
(96 %)
0 diff
(100 %id)
N73955 lung .a 1688 to 1827 140 to 1       140/140
(100 %)
0 diff
(100 %id)
N95443 senescent fibroblast .d-u 1584 to 2009 423 to 1   fully sequenced,   423/423
(100 %)
7 diff
(98.4 %id)
W24323 senescent fibroblast .d-u 1176 to 1614 1 to 443   fully sequenced,   443/443
(100 %)
7 diff
(98.5 %id)
W69720 heart .d-u 1561 to 2004 451 to 4       448/455
(98 %)
0 diff
(100 %id)
W69848 heart .d-u 1104 to 1516 1 to 415       415/415
(100 %)
2 diff
(99.6 %id)
AA025596 heart .d-u 1821 to 2003 183 to 1       183/183
(100 %)
2 diff
(99.0 %id)
AA005413 liver and spleen .d-u 909 to 1400 1 to 499       499/500
(99 %)
11 diff
(97.8 %id)
AA005414 liver and spleen .d-u 1616 to 1978 368 to 1       368/368
(100 %)
7 diff
(98.1 %id)
AA678372 liver and spleen .d-u 1566 to 2004 439 to 1       439/439
(100 %)
3 diff
(99.4 %id)
AA199604   .a 1600 to 1833 234 to 1       234/234
(100 %)
0 diff
(100 %id)
AA195101 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5065 to 5488 1 to 422   fully sequenced,   422/422
(100 %)
0 diff
(100 %id)
AA195324 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5458 to 5604 147 to 1   fully sequenced,   147/147
(100 %)
0 diff
(100 %id)
AA195489 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 859 to 1470 14 to 624       611/624
(97 %)
6 diff
(99.1 %id)
AA293036 ovarian tumor, ovary .a 640 to 1231 1 to 584       584/584
(100 %)
11 diff
(98.2 %id)
AA293428 ovarian tumor, ovary .a 1391 to 1827 437 to 1       437/437
(100 %)
1 diff
(99.8 %id)
AA398963   .d-u 1620 to 2004 400 to 16       385/400
(96 %)
0 diff
(100 %id)
AA398826.
matches multiple genes
  .d-u 754 to 1133 11 to 389     also hits gene rerda 379/389
(97 %)
6 diff
(98.5 %id)
AA452929   .a 1932 to 2291 361 to 2       360/361
(99 %)
0 diff
(100 %id)
AA453102   .a 323 to 689 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
AA457216   .a 1700 to 2034 335 to 1       335/335
(100 %)
0 diff
(100 %id)
AA457317   .a 842 to 1086 1 to 252       252/256
(98 %)
23 diff
(91.1 %id)
AA533608 colon .a 1599 to 2036 437 to 3       435/446
(97 %)
0 diff
(100 %id)
AA535354 colon .a 1314 to 1827 512 to 1       512/523
(97 %)
12 diff
(97.8 %id)
AA564406 colon .d-u 1639 to 2003 384 to 20   AAA   365/365
(100 %)
4 diff
(99.0 %id)
AA522952 Ewing's sarcoma .a 1351 to 1834 477 to 1       477/499
(95 %)
15 diff
(97.0 %id)
AA526279 normal prostate, Prostate .a 1315 to 1827 526 to 13   AAA   514/514
(100 %)
7 diff
(98.7 %id)
AA573492 colon .a 1337 to 1827 506 to 14   AAA   493/493
(100 %)
3 diff
(99.4 %id)
AA554316 colon .a 1500 to 1833 334 to 1       334/334
(100 %)
0 diff
(100 %id)
AA679966   .d-u 1520 to 2002 483 to 1       483/483
(100 %)
0 diff
(100 %id)
AA661956 alveolar rhabdomyosarcoma .d-u 1716 to 2004 1 to 289       289/303
(95 %)
4 diff
(98.7 %id)
AA768243 germinal center B cell .d-u 1592 to 2003 424 to 13   AAA   412/412
(100 %)
8 diff
(98.1 %id)
AA811935 germinal center B cell .d-u 1058 to 1423 371 to 3       369/371
(99 %)
0 diff
(100 %id)
AA825202 germinal center B cell .a 2927 to 3401 477 to 4   tiling clone,   474/479
(98 %)
0 diff
(100 %id)
AA844485 parathyroid gland, parathyroid tumor .d-u 1586 to 2001 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AA890036 parathyroid gland, parathyroid tumor .d-u 1496 to 2001 522 to 17   AAA   506/506
(100 %)
0 diff
(100 %id)
AA861702   .d-u 1573 to 2004 434 to 3       432/434
(99 %)
0 diff
(100 %id)
AA978305 carcinoid, lung .a 1545 to 2030 486 to 1       486/486
(100 %)
0 diff
(100 %id)
AA932501 carcinoid, lung .d-u 525 to 977 1 to 453     Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
AI004883   .d-u 1612 to 2004 395 to 3       393/395
(99 %)
0 diff
(100 %id)
AI005555   .a 1439 to 1835 397 to 1       397/397
(100 %)
9 diff
(97.8 %id)
AI025683   .d-u 700 to 1105 406 to 1       406/406
(100 %)
3 diff
(99.3 %id)
AI085275 B-cell, chronic lymphotic leukemia .a 1541 to 1827 300 to 14   AAA   287/287
(100 %)
2 diff
(99.4 %id)
AI052255 liver and spleen .d-u 1448 to 2003 568 to 13 K18I AAA   556/556
(100 %)
5 diff
(99.2 %id)
AI080087   .d-u 1791 to 2003 247 to 35   AAA   213/213
(100 %)
0 diff
(100 %id)
AI077565   .a 1884 to 2291 413 to 6       408/413
(98 %)
0 diff
(100 %id)
AI086375 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1114 to 1834 732 to 15   AAA   718/718
(100 %)
11 diff
(98.5 %id)
AI090668 heart .a 1457 to 1827 371 to 1       371/371
(100 %)
1 diff
(99.8 %id)
AI093452 uterus .a 1382 to 1835 455 to 2       454/455
(99 %)
0 diff
(100 %id)
AI061173   .d-u 1695 to 2003 373 to 64   AAA   310/321
(96 %)
0 diff
(100 %id)
AI139497 uterus .a 1550 to 2032 485 to 3       483/485
(99 %)
0 diff
(100 %id)
AI128048 uterus .a 1036 to 1828 799 to 4       796/806
(98 %)
0 diff
(100 %id)
AI151183 placenta .a 1374 to 1826 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AI160802 placenta .a 1343 to 1835 494 to 2       493/494
(99 %)
0 diff
(100 %id)
AI149195 placenta .a 1528 to 1826 299 to 1       299/299
(100 %)
1 diff
(99.7 %id)
AI271962 Kidney .d-u 1019 to 1415 397 to 1       397/397
(100 %)
0 diff
(100 %id)
AI245638 Kidney .a 1468 to 1827 372 to 12   AAA   361/361
(100 %)
4 diff
(98.9 %id)
AI301710 2 pooled tumors (clear cell type), Kidney .a 1504 to 1829 391 to 65   AAA   327/327
(100 %)
11 diff
(96.7 %id)
AI310974 2 pooled tumors (clear cell type), Kidney .a 1577 to 2025 460 to 12       449/460
(97 %)
0 diff
(100 %id)
AI351641   .a 1409 to 1828 428 to 9       420/428
(98 %)
0 diff
(100 %id)
AI364410 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1960 to 2033 74 to 1       74/74
(100 %)
0 diff
(100 %id)
AI261597 Kidney .a 1459 to 2031 574 to 1       574/574
(100 %)
1 diff
(99.9 %id)
AI308231 2 pooled tumors (clear cell type), Kidney .d-u 1567 to 2004 443 to 6       438/443
(98 %)
0 diff
(100 %id)
AI393755 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1977 to 2290 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AI431789 Kidney .a 1572 to 2032 463 to 3       461/463
(99 %)
0 diff
(100 %id)
AI491878 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1471 to 1828 364 to 7       358/364
(98 %)
0 diff
(100 %id)
AI625270 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d-u 1813 to 2004 192 to 1       192/192
(100 %)
0 diff
(100 %id)
AI631177 pooled germ cell tumors .a 1059 to 1834 774 to 1       774/778
(99 %)
12 diff
(98.5 %id)
AI655727 pooled germ cell tumors .d-u 1567 to 2003 450 to 14   AAA   437/437
(100 %)
4 diff
(99.1 %id)
AI611688 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d-u 1797 to 2003 207 to 1       207/207
(100 %)
0 diff
(100 %id)
AI627552 Kidney .d-u 1447 to 2001 555 to 1 exact     555/555
(100 %)
0 diff
(100 %id)
AI913642 Kidney .a 1471 to 2031 561 to 1       561/561
(100 %)
2 diff
(99.7 %id)
AI651381 pooled germ cell tumors .a 1068 to 1834 767 to 1       767/767
(100 %)
11 diff
(98.6 %id)
AI672289 Kidney .d-u 1679 to 2004 326 to 1       326/326
(100 %)
0 diff
(100 %id)
AI914465 pooled .a 1704 to 2034 331 to 1       331/331
(100 %)
0 diff
(100 %id)
AI802606 colon, colonic mucosa from 5 ulcerative colitispatients .a 1457 to 1833 380 to 4       377/380
(99 %)
0 diff
(100 %id)
AI742566 pooled .a 1451 to 2031 583 to 1       583/583
(100 %)
3 diff
(99.5 %id)
AI819304 pooled .a 1619 to 2031 415 to 1       415/415
(100 %)
16 diff
(96.2 %id)
AI769490 Kidney .a 1339 to 1834 525 to 29   AAA   497/497
(100 %)
10 diff
(98.0 %id)
AI770002 Kidney .d-u 1646 to 2004 359 to 1       359/359
(100 %)
1 diff
(99.8 %id)
AI860170 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1036 to 1828 799 to 4       796/799
(99 %)
0 diff
(100 %id)
AI955687 adenocarcinoma, Pancreas .a 1026 to 1827 802 to 1       802/802
(100 %)
21 diff
(97.4 %id)
BI497461 cochlea, ear .d-u 1754 to 2004 8 to 258       251/262
(95 %)
3 diff
(98.9 %id)
AI953406 normal epithelium, ovary .d-u 709 to 1114 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
AW071469 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .a 1164 to 1633 468 to 1       468/468
(100 %)
14 diff
(97.1 %id)
AW148428 Kidney, renal cell tumor .a 1544 to 1828 293 to 8       286/293
(97 %)
0 diff
(100 %id)
AW130184 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1150 to 1828 681 to 6       676/681
(99 %)
0 diff
(100 %id)
AW130181 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1116 to 1828 714 to 6       709/714
(99 %)
0 diff
(100 %id)
AW235068 Kidney .a 1547 to 1815 270 to 1       270/270
(100 %)
2 diff
(99.3 %id)
AW243031 Kidney .a 1377 to 1840 464 to 1       464/464
(100 %)
2 diff
(99.6 %id)
AW136084   .a 4540 to 5000 478 to 18   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 461/461
(100 %)
1 diff
(99.8 %id)
AW294132   .b 1277 to 1810 551 to 18   tiling clone, AAA   534/534
(100 %)
1 diff
(99.9 %id)
AW296874   .d-u 1054 to 1416 380 to 18   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 363/363
(100 %)
1 diff
(99.8 %id)
AW296723   .a 781 to 1199 432 to 14   AAA   419/419
(100 %)
1 diff
(99.8 %id)
AW302165 Kidney .a 1385 to 1840 457 to 2       456/457
(99 %)
0 diff
(100 %id)
AW467145 2 pooled tumors (clear cell type), Kidney .d-u 1513 to 2004 500 to 9       492/500
(98 %)
0 diff
(100 %id)
AW613958 Kidney .d-u 1568 to 2003 446 to 11   AAA   436/436
(100 %)
0 diff
(100 %id)
AW615349 2 pooled high-grade transitional celltumors, genitourinary tract .a 1569 to 1834 283 to 17   AAA   267/267
(100 %)
1 diff
(99.7 %id)
AW630305 2 pooled high-grade transitional celltumors, genitourinary tract .a 1028 to 1468 1 to 441       441/441
(100 %)
0 diff
(100 %id)
AW661963 2 pooled high-grade transitional celltumors, genitourinary tract .d-u 1568 to 2003 437 to 1       437/437
(100 %)
3 diff
(99.4 %id)
AW661972 2 pooled high-grade transitional celltumors, genitourinary tract .d-u 1569 to 2003 436 to 1       436/436
(100 %)
3 diff
(99.4 %id)
BE298215 muscle, rhabdomyosarcoma .a 199 to 732 169 to 714       529/714
(74 %)
32 diff
(95.6 %id)
BF513360   .d-u 1540 to 2003 481 to 18   AAA   464/464
(100 %)
1 diff
(99.8 %id)
CF138827 lymph .a 5067 to 5479 1 to 413       413/413
(100 %)
4 diff
(99.1 %id)
CF139868 CNCAP(3)T-225 cell line, Prostate .a 579 to 1095 1 to 517       517/517
(100 %)
5 diff
(99.1 %id)
BE463854 pooled germ cell tumors .a 1140 to 1834 697 to 1       697/697
(100 %)
34 diff
(95.2 %id)
BE467002 carcinoid, lung .a 4495 to 4999 505 to 1       505/505
(100 %)
1 diff
(99.9 %id)
BE550144 carcinoid, lung .a 1487 to 2030 544 to 1       544/546
(99 %)
0 diff
(100 %id)
BF431654 Kidney .a 1475 to 1827 366 to 14   AAA   353/353
(100 %)
0 diff
(100 %id)
BE646362 B-cell, chronic lymphotic leukemia .a 1380 to 1828 452 to 3       450/452
(99 %)
0 diff
(100 %id)
BF063561 colon, colon tumor, RER+ .a 1339 to 1833 495 to 1       495/495
(100 %)
0 diff
(100 %id)
BF110681 carcinoid, lung .a 1612 to 2032 423 to 3       421/423
(99 %)
0 diff
(100 %id)
BE567783 bladder, carcinoma, cell line .d-u 339 to 1025 1 to 689       689/769
(89 %)
43 diff
(94.5 %id)
BE567435 bladder, carcinoma, cell line .d-u 339 to 942 1 to 605       605/781
(77 %)
23 diff
(97.1 %id)
BE568515 bladder, carcinoma, cell line .a 583 to 1165 1 to 581       581/589
(98 %)
12 diff
(98.0 %id)
BF433190 carcinoid, lung .d-u 464 to 999 1 to 535     Submitted on the opposite strand 535/535
(100 %)
4 diff
(99.3 %id)
BC016864 Colon, adenocarcinoma .d-u 959 to 2003 1 to 1045 exact tiling clone, available from MGC, AAA   1045/1045
(100 %)
1 diff
(100.0 %id)
BF038718 adenocarcinoma, ovary .d-u 201 to 868 1 to 661       661/937
(70 %)
19 diff
(98.0 %id)
BE874778 large cell carcinoma, undifferentiated, lung .a 1355 to 1938 1 to 588       588/868
(67 %)
35 diff
(96.0 %id)
BE881297 large cell carcinoma, undifferentiated, lung .a 4559 to 5332 1 to 767       767/803
(95 %)
31 diff
(96.2 %id)
BE882785 leiomyosarcoma, uterus .d-u 1785 to 1997 1 to 215       215/216
(99 %)
6 diff
(97.3 %id)
BE886990 leiomyosarcoma, uterus .a 115 to 851 1 to 735       735/736
(99 %)
6 diff
(99.2 %id)
BE887149 leiomyosarcoma, uterus .a 3419 to 4121 1 to 702   tiling clone, AAA   702/933
(75 %)
18 diff
(98.1 %id)
BE888815 leiomyosarcoma, uterus .a 4570 to 5326 1 to 749   tiling clone,   749/913
(82 %)
21 diff
(97.7 %id)
BC007036 Bladder, carcinoma .a 633 to 1826 1 to 1194   available from MGC, AAA   1194/1194
(100 %)
2 diff
(99.9 %id)
BF029388 bladder, carcinoma, cell line .a 648 to 1144 1 to 499   available from MGC,   499/908
(54 %)
16 diff
(98.3 %id)
BF570973 melanotic melanoma, high MDR, skin .a 482 to 974 1 to 503       503/885
(56 %)
17 diff
(98.1 %id)
BF572951 melanotic melanoma, high MDR, skin .a 1474 to 2171 1 to 709       709/859
(82 %)
49 diff
(94.3 %id)
BF671244 muscle (skeletal) .d-u 917 to 1497 1 to 586       586/589
(99 %)
21 diff
(96.5 %id)
BF971311 adrenal cortex carcinoma, cell line, adrenal gland .a 611 to 1398 1 to 784       784/791
(99 %)
22 diff
(97.3 %id)
BF971249 adrenal cortex carcinoma, cell line, adrenal gland .a 609 to 1231 1 to 624       624/624
(100 %)
1 diff
(99.9 %id)
BG024079 duodenal adenocarcinoma, cell line, small intestine .a 39 to 626 1 to 603       601/1066
(56 %)
29 diff
(97.3 %id)
BG117302 adenocarcinoma, cell line, Liver .a 348 to 1087 1 to 736       736/1001
(73 %)
16 diff
(98.5 %id)
BG164109 hypernephroma, cell line, Kidney .a 53 to 757 1 to 719       714/1091
(65 %)
35 diff
(96.8 %id)
BG250903 adenocarcinoma, cell line, Liver .a 618 to 1283 11 to 679       669/971
(68 %)
11 diff
(98.9 %id)
BG286261 bladder, transitional cell papilloma, cell line .a 1501 to 1827 1 to 327   AAA   327/327
(100 %)
0 diff
(100 %id)
BG283190 adenocarcinoma, cell line, Prostate .a 628 to 1072 1 to 466       435/467
(93 %)
18 diff
(96.2 %id)
BG283263 adenocarcinoma, cell line, Prostate .a 628 to 1140 1 to 519       519/733
(70 %)
16 diff
(97.9 %id)
BG285194 adenocarcinoma, cell line, Prostate .d-u 1438 to 1998 1 to 558 P2R K18I W32G P33R L34F ... AAA   558/558
(100 %)
11 diff
(98.1 %id)
BG622287 placenta .a 4594 to 5291 1 to 699       699/699
(100 %)
9 diff
(98.8 %id)
BG715379 brain, hypothalamus .a 45 to 866 9 to 828       820/830
(98 %)
23 diff
(97.3 %id)
BC042545 testis .a 5949 to 8669 1 to 2721   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 2721/2721
(100 %)
1 diff
(100.0 %id)
BG719137 testis .a 5944 to 6550 1 to 608   available from MGC,   608/608
(100 %)
7 diff
(98.9 %id)
BI333411 cervical carcinoma cell line, cervix .a 53 to 894 1 to 857 I21X W99R I155H N156*     857/858
(99 %)
13 diff
(98.5 %id)
BI517634 pooled colon, kidney, stomach .a 21 to 733 1 to 722       722/1120
(64 %)
20 diff
(98.3 %id)
BI521272 pooled pancreas and spleen .a 66 to 768 1 to 733       707/812
(87 %)
52 diff
(93.6 %id)
BI522098 pooled pancreas and spleen .a 1127 to 1783 663 to 1       663/664
(99 %)
9 diff
(98.7 %id)
BI839021 pooled pancreas and spleen .a 56 to 763 18 to 757       740/757
(97 %)
23 diff
(97.0 %id)
BI917076 brain .c 1 to 522 1 to 522 exact tiling clone,   522/527
(99 %)
1 diff
(99.9 %id)
BI464956 testis .a 21 to 691 1 to 673       673/761
(88 %)
28 diff
(96.4 %id)
BI457862 brain, hypothalamus .a 15 to 574 1 to 560       560/562
(99 %)
4 diff
(99.3 %id)
BI603104 brain, hypothalamus .a 62 to 909 1 to 855 I21M V22C W23G R24G F25L ...     855/857
(99 %)
49 diff
(94.3 %id)
BM471168 leiomyosarcoma, uterus .a 769 to 1545 21 to 809       789/1142
(69 %)
39 diff
(96.6 %id)
BM464381 leiomyosarcoma, uterus .a 1 to 769 31 to 803   tiling clone,   773/1243
(62 %)
19 diff
(98.5 %id)
BM542332 melanotic melanoma, skin .a 6554 to 7343 1 to 798   AAA   798/975
(81 %)
18 diff
(98.2 %id)
BM905731 leiomyosarcoma, uterus .a 4650 to 5455 1 to 815       815/1068
(76 %)
20 diff
(98.2 %id)
BM922244 pooled brain, lung, testis .a 54 to 768 18 to 735       718/987
(72 %)
10 diff
(99.0 %id)
BQ000852 lung, Metastatic Chondrosarcoma .d-u 663 to 1416 1 to 754     Submitted on the opposite strand 754/754
(100 %)
6 diff
(99.3 %id)
BQ004567 Chondrosarcoma, Left Pelvis .a 1147 to 1827 698 to 19   AAA   680/680
(100 %)
1 diff
(99.9 %id)
BQ003477 Chondrosarcoma, Left Pelvis .a 1171 to 1827 673 to 19   AAA   655/655
(100 %)
6 diff
(99.1 %id)
BQ549080 insulinoma, Pancreas .d-u 821 to 1251 1 to 432       432/432
(100 %)
6 diff
(98.7 %id)
BQ549567 insulinoma, Pancreas .d-u 1401 to 2003 619 to 17 exact AAA   603/603
(100 %)
1 diff
(99.9 %id)
BU072943 Pancreas, Purified pancreatic islet .d-u 1357 to 1956 1 to 601 W45C P46S     601/601
(100 %)
6 diff
(99.1 %id)
BQ229367 melanotic melanoma, skin .d-u 437 to 960 10 to 539       530/1317
(40 %)
23 diff
(98.3 %id)
BQ433929 embryonal carcinoma, cell line, testis .d-u 486 to 1354 1 to 879       879/880
(99 %)
16 diff
(98.2 %id)
BQ429759 bone marrow, from acute myelogenous leukemia .d-u 351 to 999 1 to 655       655/814
(80 %)
19 diff
(97.7 %id)
BU165456 eye, retinoblastoma .a 1685 to 1834 28 to 177   AAA   150/177
(84 %)
6 diff
(96.7 %id)
BU177540 melanotic melanoma, skin .a 188 to 1099 1 to 913       913/913
(100 %)
7 diff
(99.3 %id)
BU146346 dorsal root ganglia .a 51 to 894 1 to 847 K181Q R183P R184K Q185T P186A ...     847/925
(91 %)
10 diff
(99.0 %id)
BQ925929 sciatic nerve .a 792 to 1619 1 to 840       840/978
(85 %)
25 diff
(97.5 %id)
BQ956143 sciatic nerve .e-u 1 to 882 1 to 887 exact tiling clone,   887/889
(99 %)
25 diff
(97.2 %id)
BQ918422 sciatic nerve .a 40 to 892 1 to 859 K181Q R183P E188R P189A R191A ...     859/930
(92 %)
13 diff
(98.7 %id)
BQ641787 eye, normal pigmented retinal epithelium .a 349 to 1260 2 to 919       918/928
(98 %)
20 diff
(97.9 %id)
BQ654010 hepatocellular carcinoma, cell line, Liver .a 75 to 959 13 to 903 E127Q V145G E146K I155L S163T ...     891/942
(94 %)
37 diff
(96.1 %id)
BU537741 mixed (pool of 40 RNAs) .a 1469 to 1824 1 to 358       358/392
(91 %)
4 diff
(99.0 %id)
BU538226 adenocarcinoma, cell line, breast .a 62 to 770 1 to 710       710/964
(73 %)
10 diff
(99.0 %id)
CA867934 Pancreas, Purified pancreatic islet .d-u -8 to 391 1 to 400   tiling clone,   400/400
(100 %)
2 diff
(99.5 %id)
CA943662 Pancreas, Purified pancreatic islet .d-u 623 to 1109 483 to 1       483/483
(100 %)
3 diff
(99.4 %id)
BU934056 mixed (pool of 40 RNAs) .d-u 1398 to 2001 1 to 604 K18I     604/799
(75 %)
8 diff
(99.0 %id)
CX873454 embryonic stem .a 525 to 1390 1 to 866       866/866
(100 %)
0 diff
(100 %id)
CB995846 placenta, pre-eclamptic placenta .a 1535 to 1834 27 to 326   AAA   300/326
(92 %)
6 diff
(98.2 %id)
CB956871 Pooled-Glandular .a 5425 to 6126 1 to 710       710/760
(93 %)
17 diff
(97.8 %id)
CF128723 Chondrosarcoma Lung Metastasis cell lines, lung .a 1314 to 1838 1 to 524   AAA   524/524
(100 %)
2 diff
(99.7 %id)
CF786096 mixed .a 5468 to 6009 21 to 558       538/761
(70 %)
16 diff
(97.9 %id)
CK001432 brain/CNS, Bulk tissue from Human Spinal cord .d-u 483 to 1140 1 to 654       654/669
(97 %)
12 diff
(98.3 %id)
CK003858 brain/CNS, Human Brain - Cerebellar Cortex .d-u 577 to 1268 1 to 688       688/689
(99 %)
9 diff
(98.7 %id)
TI_45236509   .a 16 to 733 57 to 783       727/1181
(61 %)
15 diff
(98.8 %id)
TI_57165968   .a 56 to 763 18 to 757       740/757
(97 %)
23 diff
(97.0 %id)
TI_57242362   .c 1 to 522 33 to 554 exact     522/559
(93 %)
7 diff
(98.8 %id)
TI_45216524   .a 64 to 909 124 to 976 I21M V22C W23G R24G F25L ...     853/978
(87 %)
52 diff
(94.7 %id)
BP275251 Kidney .a 24 to 604 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
NM_020673.2   .a 20 to 8669 1 to 8650   RefSeq, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 8650/8650
(100 %)
0 diff
(100 %id)
DA722225   .a 4845 to 5405 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA775827 brain .a 3719 to 4282 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB325974 brain .a 7214 to 7776 564 to 1       564/564
(100 %)
2 diff
(99.7 %id)
DA776840 brain .a 5294 to 5874 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA780343 brain .a 5500 to 5747 2 to 251   capped   250/250
(100 %)
2 diff
(99.2 %id)
DB326206 brain .a 7230 to 7776 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
DA785684 brain .a 5702 to 6081 2 to 381   capped   380/380
(100 %)
2 diff
(99.5 %id)
DA797532 brain .a 4154 to 4714 2 to 562   tiling clone, capped   561/561
(100 %)
2 diff
(99.7 %id)
CK429657 eye, lacrimal gland .a 6586 to 7226 1 to 641       641/641
(100 %)
0 diff
(100 %id)
DA837220 placenta .d-u 1 to 543 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB328275 placenta .d-u 1454 to 2003 552 to 1 exact     552/552
(100 %)
2 diff
(99.7 %id)
CR995120 T-Lymphocytes .a 63 to 577 1 to 515       515/516
(99 %)
1 diff
(99.9 %id)
CR981142 T-Lymphocytes .a 44 to 374 1 to 330       330/330
(100 %)
1 diff
(99.7 %id)
BM741391 Ascites, stomach .a 406 to 1062 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BM747961 Ascites, stomach .a 406 to 910 1 to 505       505/505
(100 %)
0 diff
(100 %id)
BM745549 Ascites, stomach .a 406 to 911 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
BM767269 Ascites, stomach .a 406 to 1076 1 to 671       671/671
(100 %)
0 diff
(100 %id)
BM771110 Ascites, stomach .a 406 to 980 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
BM763371 myeloma .a 406 to 1045 1 to 641       641/641
(100 %)
2 diff
(99.7 %id)
BM822665 stomach .a 520 to 966 1 to 447       447/447
(100 %)
3 diff
(99.4 %id)
TI_1948099280   .a 283 to 784 127 to 628       502/532
(94 %)
8 diff
(98.5 %id)
DN991711 brain, whole brain .a 30 to 530 1 to 501       501/501
(100 %)
5 diff
(99.1 %id)
DB017463 esophageal, tumor tissue .a 6407 to 6975 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
TI_149272910   .a 1268 to 1833 699 to 136   AAA   564/981
(57 %)
17 diff
(98.3 %id)
TI_149283435   .a 1336 to 1827 576 to 85   AAA   492/698
(70 %)
3 diff
(99.6 %id)
TI_149287428   .a 1330 to 2298 1016 to 63   AAA   954/1160
(82 %)
30 diff
(97.5 %id)
TI_149291308   .a 1104 to 2031 996 to 82   AAA   915/951
(96 %)
24 diff
(97.5 %id)
TI_149291340   .d-u 576 to 1291 824 to 109   tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 716/905
(79 %)
4 diff
(99.6 %id)
TI_149293649   .a 1050 to 1827 854 to 87   AAA   768/961
(79 %)
14 diff
(98.6 %id)
TI_149303640   .a 965 to 1833 933 to 82   AAA   852/937
(90 %)
45 diff
(95.2 %id)
TI_149313581   .a 1254 to 2031 868 to 104   AAA   765/926
(82 %)
19 diff
(98.0 %id)
TI_154168976   .a 5074 to 5600 77 to 603   tiling clone,   527/527
(100 %)
0 diff
(100 %id)
TI_154170236   .a 585 to 1115 79 to 609       531/531
(100 %)
1 diff
(99.9 %id)
TI_154194877   .a 1314 to 1838 41 to 564   AAA   524/524
(100 %)
2 diff
(99.7 %id)
TI_159718884   .a 1356 to 2289 1034 to 115   AAA   920/1030
(89 %)
31 diff
(97.0 %id)
DB168425 kidney, tumor tissue .a 4499 to 5073 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB171417 kidney, tumor tissue .a 6217 to 6787 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB221554 trachea .a 5034 to 5579 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
BQ024280 placenta .a 2087 to 2554 486 to 19   AAA   468/468
(100 %)
0 diff
(100 %id)
BQ013056 placenta .a 1410 to 1827 437 to 19   AAA   419/419
(100 %)
1 diff
(99.8 %id)
BU675404 lung, Primary Lung Epithelial Cells .a 1375 to 1833 476 to 19   AAA   458/458
(100 %)
5 diff
(99.0 %id)
BM984069 lung, Primary Lung Epithelial Cells .a 1336 to 1827 510 to 19   AAA   492/494
(99 %)
3 diff
(99.4 %id)
BM972748 lung .a 1549 to 2298 766 to 19   tiling clone, AAA   748/748
(100 %)
3 diff
(99.6 %id)
BM973886 lung .d-u 692 to 1291 618 to 19   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 600/600
(100 %)
0 diff
(100 %id)
BM973944 lung .a 1295 to 2031 756 to 19   AAA   738/738
(100 %)
2 diff
(99.8 %id)
BM975191 lung .a 1108 to 1827 734 to 19   AAA   716/716
(100 %)
7 diff
(99.1 %id)
CB851071 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1089 to 1833 762 to 19   AAA   744/744
(100 %)
5 diff
(99.4 %id)
CB305462 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1415 to 2031 635 to 19   AAA   617/617
(100 %)
3 diff
(99.6 %id)
CB241988 Human Lung Epithelial cells, lung .d-u 1292 to 2003 728 to 17 K18I AAA   712/713
(99 %)
4 diff
(99.5 %id)
CB250689 Human Lung Epithelial cells, lung .a 1379 to 1838 478 to 19   AAA   460/469
(98 %)
0 diff
(100 %id)
BM713620 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1352 to 1706 1 to 357       357/357
(100 %)
2 diff
(99.5 %id)
BM718578 eye, fetal eye .d-u 1664 to 2001 1 to 338   AAA   338/338
(100 %)
0 diff
(100 %id)
CA414187 Knee, Osteoarthritic Cartilage .d-u 1402 to 2001 615 to 16 K18I AAA   600/600
(100 %)
4 diff
(99.4 %id)
CA431573 cell lines, Enchondroma .a 1125 to 1827 716 to 19   AAA   698/698
(100 %)
9 diff
(98.8 %id)
CA428943 Cell Line, Chondrosarcoma .d-u 1754 to 2003 266 to 17   AAA   250/252
(99 %)
2 diff
(99.3 %id)
CA429001 Cell Line, Chondrosarcoma .d-u 1402 to 2001 615 to 16 K18I AAA   600/600
(100 %)
8 diff
(98.7 %id)
CA429027 Cell Line, Chondrosarcoma .d-u 462 to 1110 658 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 645/645
(100 %)
3 diff
(99.6 %id)
BU629842 cell lines, Chondrosarcoma .d-u 1282 to 2003 740 to 19 K18I AAA   722/722
(100 %)
7 diff
(99.1 %id)
BU633803 cell lines, Chondrosarcoma .a 1072 to 1833 779 to 18   AAA   762/762
(100 %)
0 diff
(100 %id)
CA748617 Alveolar Macrophage, lung .a 1227 to 1833 625 to 19   AAA   607/607
(100 %)
1 diff
(99.9 %id)
U46388 liver cell line, pancreatic cancer .a 6394 to 6758 13 to 380       368/383
(96 %)
7 diff
(98.2 %id)
BP380488   .a 37 to 662 1 to 624       624/888
(70 %)
8 diff
(99.1 %id)
BP872639 embryonal kidney .d-u 1401 to 2003 619 to 17     Suspected internal deletion, this clone was ignored 603/603
(100 %)
1 diff
(99.9 %id)
AI138768   .d-u 1401 to 2003 619 to 17   AAA   603/603
(100 %)
1 diff
(99.9 %id)
BQ945982 leiomyosarcoma, uterus .d-u 1357 to 1956 1 to 601     Suspected internal deletion, this clone was ignored 601/601
(100 %)
6 diff
(99.1 %id)
BM838139 Ascites, stomach .d-u 1357 to 1956 1 to 601     This clone was ignored 601/601
(100 %)
6 diff
(99.1 %id)
DA929637 small intestine .d-u 437 to 960 10 to 539   capped   530/1317
(40 %)
23 diff
(98.3 %id)
DB332263 small intestine .d-u 437 to 960 10 to 539       530/1317
(40 %)
23 diff
(98.3 %id)
DB222432 trachea .d-u 486 to 1354 1 to 879   capped This clone was ignored 879/880
(99 %)
16 diff
(98.2 %id)
DB349480 trachea .d-u 486 to 1354 1 to 879     This clone was ignored 879/880
(99 %)
16 diff
(98.2 %id)
BQ429759 bone marrow, from acute myelogenous leukemia .d-u 351 to 999 1 to 655       655/814
(80 %)
19 diff
(97.7 %id)
BQ429759 bone marrow, from acute myelogenous leukemia .d-u 351 to 999 1 to 655       655/814
(80 %)
19 diff
(97.7 %id)
BU165456 eye, retinoblastoma .a 1685 to 1834 28 to 177   AAA   150/177
(84 %)
6 diff
(96.7 %id)
BU165456 eye, retinoblastoma .a 1685 to 1834 28 to 177   AAA   150/177
(84 %)
6 diff
(96.7 %id)
BU177540 melanotic melanoma, skin .a 188 to 1099 1 to 913       913/913
(100 %)
7 diff
(99.3 %id)
BU177540 melanotic melanoma, skin .a 188 to 1099 1 to 913       913/913
(100 %)
7 diff
(99.3 %id)
BU146346 dorsal root ganglia .a 51 to 894 1 to 847 K181Q R183P R184K Q185T P186A ...     847/925
(91 %)
10 diff
(99.0 %id)
BQ925929 sciatic nerve .a 792 to 1619 1 to 840       840/978
(85 %)
25 diff
(97.5 %id)
BQ956143 sciatic nerve .e-u 1 to 882 1 to 887 exact tiling clone,   887/889
(99 %)
25 diff
(97.2 %id)
BQ918422 sciatic nerve .a 40 to 892 1 to 859 K181Q R183P E188R P189A R191A ...     859/930
(92 %)
13 diff
(98.7 %id)
BQ641787 eye, normal pigmented retinal epithelium .a 349 to 1260 2 to 919       918/928
(98 %)
20 diff
(97.9 %id)
BQ641787 eye, normal pigmented retinal epithelium .a 349 to 1260 2 to 919       918/928
(98 %)
20 diff
(97.9 %id)
BQ654010 hepatocellular carcinoma, cell line, Liver .a 75 to 959 13 to 903 E127Q V145G E146K I155L S163T ...     891/942
(94 %)
37 diff
(96.1 %id)
BQ654010 hepatocellular carcinoma, cell line, Liver .a 75 to 959 13 to 903 E127Q V145G E146K I155L S163T ...     891/942
(94 %)
37 diff
(96.1 %id)
BU537741 mixed (pool of 40 RNAs) .a 1469 to 1824 1 to 358       358/392
(91 %)
4 diff
(99.0 %id)
BU538226 adenocarcinoma, cell line, breast .a 62 to 770 1 to 710       710/964
(73 %)
10 diff
(99.0 %id)
BU538226 adenocarcinoma, cell line, breast .a 62 to 770 1 to 710       710/964
(73 %)
10 diff
(99.0 %id)
CA867934 Pancreas, Purified pancreatic islet .d-u -8 to 391 1 to 400   tiling clone,   400/400
(100 %)
2 diff
(99.5 %id)
CA867934 Pancreas, Purified pancreatic islet .d-u -8 to 391 1 to 400   tiling clone,   400/400
(100 %)
2 diff
(99.5 %id)
CA943662 Pancreas, Purified pancreatic islet .d-u 623 to 1109 483 to 1       483/483
(100 %)
3 diff
(99.4 %id)
CA943662 Pancreas, Purified pancreatic islet .d-u 623 to 1109 483 to 1       483/483
(100 %)
3 diff
(99.4 %id)
BU934056 mixed (pool of 40 RNAs) .d-u 1398 to 2001 1 to 604 K18I     604/799
(75 %)
8 diff
(99.0 %id)
CX873454 embryonic stem .a 525 to 1390 1 to 866       866/866
(100 %)
0 diff
(100 %id)
CB995846 placenta, pre-eclamptic placenta .a 1535 to 1834 27 to 326   AAA   300/326
(92 %)
6 diff
(98.2 %id)
CB995846 placenta, pre-eclamptic placenta .a 1535 to 1834 27 to 326   AAA   300/326
(92 %)
6 diff
(98.2 %id)
CB956871 Pooled-Glandular .a 5425 to 6126 1 to 710       710/760
(93 %)
17 diff
(97.8 %id)
CF128723 Chondrosarcoma Lung Metastasis cell lines, lung .a 1314 to 1838 1 to 524   AAA   524/524
(100 %)
2 diff
(99.7 %id)
CF128723 Chondrosarcoma Lung Metastasis cell lines, lung .a 1314 to 1838 1 to 524   AAA   524/524
(100 %)
2 diff
(99.7 %id)
CF786096 mixed .a 5468 to 6009 21 to 558       538/761
(70 %)
16 diff
(97.9 %id)
CK001432 brain/CNS, Bulk tissue from Human Spinal cord .d-u 483 to 1140 1 to 654       654/669
(97 %)
12 diff
(98.3 %id)
CK001432 brain/CNS, Bulk tissue from Human Spinal cord .d-u 483 to 1140 1 to 654       654/669
(97 %)
12 diff
(98.3 %id)
CK003858 brain/CNS, Human Brain - Cerebellar Cortex .d-u 577 to 1268 1 to 688       688/689
(99 %)
9 diff
(98.7 %id)
CK003858 brain/CNS, Human Brain - Cerebellar Cortex .d-u 577 to 1268 1 to 688       688/689
(99 %)
9 diff
(98.7 %id)
TI_45236509   .a 16 to 733 57 to 783       727/1181
(61 %)
15 diff
(98.8 %id)
TI_57165968   .a 56 to 763 18 to 757       740/757
(97 %)
23 diff
(97.0 %id)
TI_57242362   .c 1 to 522 33 to 554 exact     522/559
(93 %)
7 diff
(98.8 %id)
TI_45216524   .a 64 to 909 124 to 976 I21M V22C W23G R24G F25L ...     853/978
(87 %)
52 diff
(94.7 %id)
BP275251 Kidney .a 24 to 604 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
NM_020673.2   .a 20 to 8669 1 to 8650   RefSeq, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 8650/8650
(100 %)
0 diff
(100 %id)
DA722225   .a 4845 to 5405 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA775827 brain .a 3719 to 4282 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB325974 brain .a 7214 to 7776 564 to 1       564/564
(100 %)
2 diff
(99.7 %id)
DA776840 brain .a 5294 to 5874 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA780343 brain .a 5500 to 5747 2 to 251   capped   250/250
(100 %)
2 diff
(99.2 %id)
DB326206 brain .a 7230 to 7776 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
DA785684 brain .a 5702 to 6081 2 to 381   capped   380/380
(100 %)
2 diff
(99.5 %id)
DA797532 brain .a 4154 to 4714 2 to 562   tiling clone, capped   561/561
(100 %)
2 diff
(99.7 %id)
CK429657 eye, lacrimal gland .a 6586 to 7226 1 to 641       641/641
(100 %)
0 diff
(100 %id)
CK429657 eye, lacrimal gland .a 6586 to 7226 1 to 641       641/641
(100 %)
0 diff
(100 %id)
DA837220 placenta .d-u 1 to 543 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB328275 placenta .d-u 1454 to 2003 552 to 1 exact     552/552
(100 %)
2 diff
(99.7 %id)
CR995120 T-Lymphocytes .a 63 to 577 1 to 515       515/516
(99 %)
1 diff
(99.9 %id)
CR981142 T-Lymphocytes .a 44 to 374 1 to 330       330/330
(100 %)
1 diff
(99.7 %id)
BM741391 Ascites, stomach .a 406 to 1062 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BM741391 Ascites, stomach .a 406 to 1062 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BM747961 Ascites, stomach .a 406 to 910 1 to 505       505/505
(100 %)
0 diff
(100 %id)
BM747961 Ascites, stomach .a 406 to 910 1 to 505       505/505
(100 %)
0 diff
(100 %id)
BM745549 Ascites, stomach .a 406 to 911 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
BM745549 Ascites, stomach .a 406 to 911 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
BM767269 Ascites, stomach .a 406 to 1076 1 to 671       671/671
(100 %)
0 diff
(100 %id)
BM767269 Ascites, stomach .a 406 to 1076 1 to 671       671/671
(100 %)
0 diff
(100 %id)
BM771110 Ascites, stomach .a 406 to 980 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
BM771110 Ascites, stomach .a 406 to 980 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
BM763371 myeloma .a 406 to 1045 1 to 641       641/641
(100 %)
2 diff
(99.7 %id)
BM822665 stomach .a 520 to 966 1 to 447       447/447
(100 %)
3 diff
(99.4 %id)
TI_1948099280   .a 283 to 784 127 to 628       502/532
(94 %)
8 diff
(98.5 %id)
DN991711 brain, whole brain .a 30 to 530 1 to 501       501/501
(100 %)
5 diff
(99.1 %id)
DN991711 brain, whole brain .a 30 to 530 1 to 501       501/501
(100 %)
5 diff
(99.1 %id)
DB017463 esophageal, tumor tissue .a 6407 to 6975 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
TI_149272910   .a 1268 to 1833 699 to 136   AAA   564/981
(57 %)
17 diff
(98.3 %id)
TI_149283435   .a 1336 to 1827 576 to 85   AAA   492/698
(70 %)
3 diff
(99.6 %id)
TI_149287428   .a 1330 to 2298 1016 to 63   AAA   954/1160
(82 %)
30 diff
(97.5 %id)
TI_149291308   .a 1104 to 2031 996 to 82   AAA   915/951
(96 %)
24 diff
(97.5 %id)
TI_149291340   .d-u 576 to 1291 824 to 109   tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 716/905
(79 %)
4 diff
(99.6 %id)
TI_149293649   .a 1050 to 1827 854 to 87   AAA   768/961
(79 %)
14 diff
(98.6 %id)
TI_149303640   .a 965 to 1833 933 to 82   AAA   852/937
(90 %)
45 diff
(95.2 %id)
TI_149313581   .a 1254 to 2031 868 to 104   AAA   765/926
(82 %)
19 diff
(98.0 %id)
TI_154168976   .a 5074 to 5600 77 to 603   tiling clone,   527/527
(100 %)
0 diff
(100 %id)
TI_154170236   .a 585 to 1115 79 to 609       531/531
(100 %)
1 diff
(99.9 %id)
TI_154194877   .a 1314 to 1838 41 to 564   AAA   524/524
(100 %)
2 diff
(99.7 %id)
TI_159718884   .a 1356 to 2289 1034 to 115   AAA   920/1030
(89 %)
31 diff
(97.0 %id)
DB168425 kidney, tumor tissue .a 4499 to 5073 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB171417 kidney, tumor tissue .a 6217 to 6787 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB221554 trachea .a 5034 to 5579 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
BQ024280 placenta .a 2087 to 2554 486 to 19   AAA   468/468
(100 %)
0 diff
(100 %id)
BQ013056 placenta .a 1410 to 1827 437 to 19   AAA   419/419
(100 %)
1 diff
(99.8 %id)
BU675404 lung, Primary Lung Epithelial Cells .a 1375 to 1833 476 to 19   AAA   458/458
(100 %)
5 diff
(99.0 %id)
BU675404 lung, Primary Lung Epithelial Cells .a 1375 to 1833 476 to 19   AAA   458/458
(100 %)
5 diff
(99.0 %id)
BM984069 lung, Primary Lung Epithelial Cells .a 1336 to 1827 510 to 19   AAA   492/494
(99 %)
3 diff
(99.4 %id)
BM984069 lung, Primary Lung Epithelial Cells .a 1336 to 1827 510 to 19   AAA   492/494
(99 %)
3 diff
(99.4 %id)
BM972748 lung .a 1549 to 2298 766 to 19   tiling clone, AAA   748/748
(100 %)
3 diff
(99.6 %id)
BM973886 lung .d-u 692 to 1291 618 to 19   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 600/600
(100 %)
0 diff
(100 %id)
BM973944 lung .a 1295 to 2031 756 to 19   AAA   738/738
(100 %)
2 diff
(99.8 %id)
BM975191 lung .a 1108 to 1827 734 to 19   AAA   716/716
(100 %)
7 diff
(99.1 %id)
CB851071 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1089 to 1833 762 to 19   AAA   744/744
(100 %)
5 diff
(99.4 %id)
CB851071 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1089 to 1833 762 to 19   AAA   744/744
(100 %)
5 diff
(99.4 %id)
CB305462 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1415 to 2031 635 to 19   AAA   617/617
(100 %)
3 diff
(99.6 %id)
CB305462 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1415 to 2031 635 to 19   AAA   617/617
(100 %)
3 diff
(99.6 %id)
CB241988 Human Lung Epithelial cells, lung .d-u 1292 to 2003 728 to 17 K18I AAA   712/713
(99 %)
4 diff
(99.5 %id)
CB241988 Human Lung Epithelial cells, lung .d-u 1292 to 2003 728 to 17 K18I AAA   712/713
(99 %)
4 diff
(99.5 %id)
CB250689 Human Lung Epithelial cells, lung .a 1379 to 1838 478 to 19   AAA   460/469
(98 %)
0 diff
(100 %id)
CB250689 Human Lung Epithelial cells, lung .a 1379 to 1838 478 to 19   AAA   460/469
(98 %)
0 diff
(100 %id)
BM713620 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1352 to 1706 1 to 357       357/357
(100 %)
2 diff
(99.5 %id)
BM713620 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1352 to 1706 1 to 357       357/357
(100 %)
2 diff
(99.5 %id)
BM718578 eye, fetal eye .d-u 1664 to 2001 1 to 338   AAA   338/338
(100 %)
0 diff
(100 %id)
BM718578 eye, fetal eye .d-u 1664 to 2001 1 to 338   AAA   338/338
(100 %)
0 diff
(100 %id)
CA414187 Knee, Osteoarthritic Cartilage .d-u 1402 to 2001 615 to 16 K18I AAA   600/600
(100 %)
4 diff
(99.4 %id)
CA414187 Knee, Osteoarthritic Cartilage .d-u 1402 to 2001 615 to 16 K18I AAA   600/600
(100 %)
4 diff
(99.4 %id)
CA431573 cell lines, Enchondroma .a 1125 to 1827 716 to 19   AAA   698/698
(100 %)
9 diff
(98.8 %id)
CA431573 cell lines, Enchondroma .a 1125 to 1827 716 to 19   AAA   698/698
(100 %)
9 diff
(98.8 %id)
CA428943 Cell Line, Chondrosarcoma .d-u 1754 to 2003 266 to 17   AAA   250/252
(99 %)
2 diff
(99.3 %id)
CA428943 Cell Line, Chondrosarcoma .d-u 1754 to 2003 266 to 17   AAA   250/252
(99 %)
2 diff
(99.3 %id)
CA429001 Cell Line, Chondrosarcoma .d-u 1402 to 2001 615 to 16 K18I AAA   600/600
(100 %)
8 diff
(98.7 %id)
CA429001 Cell Line, Chondrosarcoma .d-u 1402 to 2001 615 to 16 K18I AAA   600/600
(100 %)
8 diff
(98.7 %id)
CA429027 Cell Line, Chondrosarcoma .d-u 462 to 1110 658 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 645/645
(100 %)
3 diff
(99.6 %id)
CA429027 Cell Line, Chondrosarcoma .d-u 462 to 1110 658 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 645/645
(100 %)
3 diff
(99.6 %id)
BU629842 cell lines, Chondrosarcoma .d-u 1282 to 2003 740 to 19 K18I AAA   722/722
(100 %)
7 diff
(99.1 %id)
BU629842 cell lines, Chondrosarcoma .d-u 1282 to 2003 740 to 19 K18I AAA   722/722
(100 %)
7 diff
(99.1 %id)
BU633803 cell lines, Chondrosarcoma .a 1072 to 1833 779 to 18   AAA   762/762
(100 %)
0 diff
(100 %id)
BU633803 cell lines, Chondrosarcoma .a 1072 to 1833 779 to 18   AAA   762/762
(100 %)
0 diff
(100 %id)
CA748617 Alveolar Macrophage, lung .a 1227 to 1833 625 to 19   AAA   607/607
(100 %)
1 diff
(99.9 %id)
CA748617 Alveolar Macrophage, lung .a 1227 to 1833 625 to 19   AAA   607/607
(100 %)
1 diff
(99.9 %id)
U46388 liver cell line, pancreatic cancer .a 6394 to 6758 13 to 380       368/383
(96 %)
7 diff
(98.2 %id)
U46388 liver cell line, pancreatic cancer .a 6394 to 6758 13 to 380       368/383
(96 %)
7 diff
(98.2 %id)
BP380488   .a 37 to 662 1 to 624       624/888
(70 %)
8 diff
(99.1 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI