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Gene QTRT1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
271 supporting clones for gene QTRT1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_031209.2   .a 1 to 1327 7 to 1333 exact RefSeq, AAA   1333/1333
(100 %)
0 diff
(100 %id)
CT003728 T-Lymphocytes .a 1 to 717 7 to 727       727/730
(99 %)
8 diff
(99.0 %id)
BX488981   .a 1 to 353 4 to 356       356/356
(100 %)
3 diff
(99.2 %id)
BP280438   .a 1 to 579 4 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BF978724 melanotic melanoma, high MDR, skin .a 1 to 665 3 to 663       663/710
(93 %)
13 diff
(98.2 %id)
DC340154 thalamus .a 1 to 558 2 to 559       559/559
(100 %)
1 diff
(99.9 %id)
BQ880496 dorsal root ganglia .a 7 to 805 1 to 800       800/875
(91 %)
17 diff
(98.1 %id)
AK314308 amygdala .a 10 to 1231 1 to 1222 D371G     1222/1222
(100 %)
2 diff
(99.9 %id)
CB152892 brain .a 10 to 488 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
DA505878 brain .a 10 to 562 9 to 561   capped   553/553
(100 %)
1 diff
(99.9 %id)
TI_57146347   .a 10 to 651 66 to 707       642/707
(90 %)
6 diff
(99.2 %id)
CR996289 T-Lymphocytes .a 10 to 790 1 to 781       781/791
(98 %)
1 diff
(99.9 %id)
BP332841 salivary gland .a 10 to 412 1 to 403       403/569
(70 %)
4 diff
(99.3 %id)
DA150372 amygdala .a 11 to 537 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DA186614 amygdala .a 11 to 553 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA361105 subthalamic nucleus .a 11 to 537 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
BE301922 adenocarcinoma cell line, ovary .a 11 to 425 1 to 416       416/416
(100 %)
1 diff
(99.8 %id)
BG913184 anaplastic oligodendroglioma with 1p/19qloss, brain .a 11 to 722 1 to 713       713/714
(99 %)
7 diff
(99.1 %id)
BI769642 pooled lung and spleen .a 11 to 786 1 to 776       776/776
(100 %)
8 diff
(99.0 %id)
TI_57179819   .a 11 to 786 31 to 806       776/806
(96 %)
9 diff
(98.9 %id)
CR980882 T-Lymphocytes .a 11 to 624 1 to 616       616/620
(99 %)
3 diff
(99.6 %id)
DB018545 esophageal, tumor tissue .a 11 to 573 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BG485238 lung .a 12 to 716 1 to 708       708/710
(99 %)
7 diff
(99.1 %id)
DA693539   .a 12 to 576 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BP210123 cerebellum .a 13 to 569 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DB485787 hypothalamus .a 13 to 445 1 to 434       434/434
(100 %)
10 diff
(97.7 %id)
DB500299 hypothalamus .a 13 to 502 1 to 490       490/490
(100 %)
4 diff
(99.2 %id)
BG386318 adenocarcinoma cell line, colon .a 13 to 816 1 to 805       805/948
(84 %)
36 diff
(96.3 %id)
BG707850 brain, hypothalamus .a 13 to 700 6 to 693       688/693
(99 %)
7 diff
(99.0 %id)
BG708469 brain, hypothalamus .a 13 to 682 6 to 681       676/681
(99 %)
15 diff
(97.8 %id)
BI226296 Burkitt lymphoma, lymph .a 13 to 532 1 to 535       535/538
(99 %)
21 diff
(96.1 %id)
BI759365 pooled colon, kidney, stomach .a 13 to 651 1 to 639       639/639
(100 %)
2 diff
(99.7 %id)
BI668270 brain, hypothalamus .a 13 to 718 6 to 710       705/714
(98 %)
11 diff
(98.5 %id)
BQ929911 leiomyosarcoma, uterus .a 13 to 784 1 to 775       775/930
(83 %)
13 diff
(98.7 %id)
TI_44346236   .a 13 to 718 87 to 791       705/795
(88 %)
12 diff
(98.5 %id)
AU309775 neuroblastoma .a 13 to 592 1 to 577       577/577
(100 %)
6 diff
(99.0 %id)
DA729073   .a 13 to 693 2 to 686   capped   685/685
(100 %)
10 diff
(98.6 %id)
BP328475 rectum .a 13 to 595 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BP330934 rectum .a 13 to 594 1 to 582       582/582
(100 %)
0 diff
(100 %id)
CB164816 Ascites, stomach .a 13 to 709 1 to 699       699/699
(100 %)
2 diff
(99.8 %id)
BM757226 Ascites, stomach .a 13 to 595 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BM755785 Ascites, stomach .a 13 to 534 1 to 522       522/522
(100 %)
0 diff
(100 %id)
BM742051 Ascites, stomach .a 13 to 487 1 to 475       475/475
(100 %)
3 diff
(99.4 %id)
BM742060 Ascites, stomach .a 13 to 588 1 to 576       576/576
(100 %)
0 diff
(100 %id)
DR002781 fetal brain .a 13 to 665 8 to 660       653/660
(98 %)
6 diff
(99.1 %id)
DA074207 cerebellum .a 14 to 556 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA355275 subthalamic nucleus .a 14 to 567 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA359506 subthalamic nucleus .a 14 to 570 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA360927 subthalamic nucleus .a 14 to 561 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA382710 thalamus .a 14 to 576 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA391384 thalamus .a 14 to 586 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BX423133 adult brain, brain .a 14 to 886 1 to 881       881/886
(99 %)
55 diff
(93.8 %id)
AF302783 Spleen .a 14 to 1325 1 to 1313 exact     1313/1313
(100 %)
2 diff
(99.9 %id)
BG677703 skin, squamous cell carcinoma .a 14 to 618 1 to 604       604/604
(100 %)
3 diff
(99.6 %id)
BI837243 pooled pancreas and spleen .a 14 to 696 1 to 680       680/683
(99 %)
12 diff
(98.3 %id)
TI_57168321   .a 14 to 696 31 to 710       680/713
(95 %)
12 diff
(98.4 %id)
DA878604 Prostate .a 14 to 582 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CR975440 T-Lymphocytes .a 14 to 732 1 to 718       718/722
(99 %)
2 diff
(99.8 %id)
DA929262 small intestine .a 14 to 580 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BI087427 cervix .a 15 to 687 1 to 673       673/673
(100 %)
4 diff
(99.5 %id)
BI160705 epithelioid carcinoma cell line, Pancreas .a 16 to 689 1 to 675       675/675
(100 %)
7 diff
(99.0 %id)
BI227091 Burkitt lymphoma, lymph .a 17 to 809 1 to 802       800/863
(92 %)
31 diff
(96.5 %id)
BU509430 leiomyosarcoma, uterus .a 17 to 809 1 to 795       795/938
(84 %)
17 diff
(98.2 %id)
BG284101 adenocarcinoma, cell line, Prostate .a 19 to 580 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
BF527482 anaplastic oligodendroglioma with 1p/19qloss, brain .a 21 to 674 12 to 664       651/779
(83 %)
22 diff
(97.2 %id)
CD676215 eye, lens .a 22 to 622 12 to 612       601/612
(98 %)
6 diff
(99.1 %id)
BM738379 Ascites, stomach .a 22 to 575 1 to 552       552/552
(100 %)
3 diff
(99.5 %id)
BG259979 bladder, transitional cell papilloma, cell line .a 23 to 749 1 to 718       718/784
(91 %)
14 diff
(98.3 %id)
BM926959 brain .a 23 to 785 1 to 769       769/1012
(75 %)
19 diff
(98.2 %id)
CX755575 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 23 to 722 1 to 700     Submitted on the opposite strand 700/701
(99 %)
1 diff
(99.9 %id)
BY800345 eye .a 24 to 626 1 to 603       603/603
(100 %)
0 diff
(100 %id)
BE797707 lung, small cell carcinoma .a 24 to 759 36 to 768       733/768
(95 %)
7 diff
(99.1 %id)
BG818430 anaplastic oligodendroglioma with 1p/19qloss, brain .a 24 to 796 1 to 774       774/774
(100 %)
7 diff
(99.1 %id)
BI755827 brain .a 24 to 784 1 to 764       764/764
(100 %)
5 diff
(99.4 %id)
TI_57217046   .a 24 to 784 35 to 798       764/798
(95 %)
8 diff
(99.0 %id)
BU508404 leiomyosarcoma, uterus .a 25 to 921 1 to 902       902/905
(99 %)
19 diff
(98.0 %id)
CR974823 T-Lymphocytes .a 25 to 675 1 to 651       651/661
(98 %)
1 diff
(99.9 %id)
CR614822 HeLa cells Cot 25-normalized .a 26 to 1295 1 to 1270       1270/1270
(100 %)
0 diff
(100 %id)
BX384616   .a 26 to 580 1 to 554   fully sequenced,   554/554
(100 %)
1 diff
(99.9 %id)
BG819713 anaplastic oligodendroglioma with 1p/19qloss, brain .a 26 to 796 1 to 774       774/774
(100 %)
9 diff
(98.9 %id)
BI460434 testis .a 26 to 766 1 to 742       742/742
(100 %)
9 diff
(98.8 %id)
BM460709 leiomyosarcoma, uterus .a 28 to 804 1 to 778       778/1077
(72 %)
6 diff
(99.5 %id)
CX163299 human embryonic stem cells differentiated toan early endodermal cell type .a 28 to 858 1 to 831       831/831
(100 %)
0 diff
(100 %id)
BE793565 lung, small cell carcinoma .a 29 to 814 1 to 802       800/977
(81 %)
43 diff
(95.6 %id)
CN298005 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 30 to 710 1 to 681       681/681
(100 %)
2 diff
(99.8 %id)
BG423699 Kidney, renal cell adenocarcinoma .a 31 to 759 1 to 733       733/899
(81 %)
16 diff
(98.3 %id)
CR993977 T-Lymphocytes .a 31 to 785 1 to 756       756/757
(99 %)
4 diff
(99.5 %id)
BI908233 leukocyte .a 32 to 746 1 to 712       712/713
(99 %)
8 diff
(98.9 %id)
BI918973 brain .a 32 to 705 30 to 702       673/706
(95 %)
10 diff
(98.6 %id)
TI_57235117   .a 32 to 746 30 to 741       712/742
(95 %)
13 diff
(98.3 %id)
TI_57241588   .a 32 to 705 30 to 702       673/706
(95 %)
10 diff
(98.6 %id)
BE269210 Burkitt lymphoma, lymph .a 33 to 674 1 to 642       642/702
(91 %)
12 diff
(98.3 %id)
CN298001 embryonic stem cells, cell lines H1, H7, andH9 .a 34 to 711 1 to 679       679/679
(100 %)
3 diff
(99.6 %id)
BC015350 Brain, anaplastic oligodendroglioma with1p/19q loss .a 36 to 1325 1 to 1290   tiling clone, available from MGC, AAA   1290/1290
(100 %)
0 diff
(100 %id)
BE513349 Burkitt lymphoma, lymph .a 36 to 636 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
BF345932 anaplastic oligodendroglioma with 1p/19qloss, brain .a 36 to 665 1 to 629       629/1355
(46 %)
14 diff
(99.0 %id)
CK429604 eye, lacrimal gland .a 36 to 686 1 to 651       651/651
(100 %)
0 diff
(100 %id)
BE269420 Burkitt lymphoma, lymph .a 37 to 663 1 to 624       624/734
(85 %)
9 diff
(98.8 %id)
BE561309 Burkitt lymphoma, lymph .a 37 to 809 1 to 763       763/964
(79 %)
21 diff
(97.9 %id)
CX866272 embryonic stem .a 37 to 719 1 to 683       683/683
(100 %)
0 diff
(100 %id)
BE270050 Burkitt lymphoma, lymph .a 38 to 674 1 to 637       637/773
(82 %)
18 diff
(97.7 %id)
CN298003 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 40 to 490 1 to 452       452/452
(100 %)
1 diff
(99.8 %id)
BE784596 large cell carcinoma, lung .a 40 to 596 1 to 566       566/684
(82 %)
14 diff
(98.0 %id)
CN298000 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 43 to 710 1 to 669       669/669
(100 %)
1 diff
(99.9 %id)
BE780797 eye, retinoblastoma .a 44 to 816 1 to 777       777/912
(85 %)
22 diff
(97.6 %id)
BF530167 anaplastic oligodendroglioma with 1p/19qloss, brain .a 52 to 664 10 to 627       618/782
(79 %)
38 diff
(95.2 %id)
CA778333 Pancreas, Purified pancreatic islet .a 56 to 819 20 to 783   fully sequenced,   764/783
(97 %)
9 diff
(98.9 %id)
DB484449 hypothalamus .a 63 to 495 1 to 434       434/434
(100 %)
4 diff
(99.1 %id)
DB503341 hypothalamus .a 63 to 541 1 to 479       479/479
(100 %)
2 diff
(99.6 %id)
AF302784 neuroepithelium .a 90 to 1325 1 to 1236       1236/1236
(100 %)
0 diff
(100 %id)
AA173367   .a 91 to 562 1 to 471       471/473
(99 %)
7 diff
(98.6 %id)
BU161828 eye, retinoblastoma .a 102 to 705 1 to 606       606/1053
(57 %)
10 diff
(99.1 %id)
DA098372 cerebellum .a 110 to 648 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
BF345761 anaplastic oligodendroglioma with 1p/19qloss, brain .a 143 to 706 122 to 707       547/710
(77 %)
32 diff
(95.5 %id)
TI_1948076206   .a 149 to 696 129 to 676   fully sequenced,   548/676
(81 %)
6 diff
(99.2 %id)
TI_1948076387   .a 149 to 696 130 to 677   fully sequenced,   548/677
(80 %)
6 diff
(99.2 %id)
TI_1948076566   .a 149 to 696 130 to 677   fully sequenced,   548/677
(80 %)
6 diff
(99.2 %id)
TI_1948076745   .a 149 to 696 131 to 678   fully sequenced,   548/678
(80 %)
6 diff
(99.2 %id)
CV023486 mixed .a 155 to 801 1 to 645       645/652
(98 %)
6 diff
(99.1 %id)
BX410292 adult brain, brain .a 214 to 1124 1 to 910       910/910
(100 %)
12 diff
(98.7 %id)
BX410293 adult brain, brain .a 254 to 1081 28 to 854       827/858
(96 %)
17 diff
(98.1 %id)
BM511883 insulinoma, Pancreas .a 301 to 908 1 to 608     Submitted on the opposite strand 608/608
(100 %)
0 diff
(100 %id)
BM826187 Ascites, stomach .a 330 to 611 1 to 284       284/284
(100 %)
6 diff
(97.9 %id)
CB267067 adipose .a 402 to 710 1 to 309       309/310
(99 %)
1 diff
(99.7 %id)
BG122768 adenocarcinoma, cell line, Liver .a 470 to 1182 13 to 729       693/768
(90 %)
48 diff
(93.8 %id)
BG121966 adenocarcinoma, cell line, Liver .a 470 to 1179 11 to 717       705/717
(98 %)
28 diff
(96.1 %id)
CV316134 nervous_tumor .a 506 to 919 17 to 429       411/429
(95 %)
8 diff
(98.2 %id)
AL138461 uterus .a 508 to 867 1 to 360   fully sequenced,   360/360
(100 %)
0 diff
(100 %id)
BQ643095 lymph, lymphoma, cell line .a 511 to 1271 1 to 762       762/929
(82 %)
7 diff
(99.3 %id)
BU151173 lymph, lymphoma, cell line .a 511 to 1315 1 to 809   AAA   809/821
(98 %)
10 diff
(98.8 %id)
BX384615   .a 519 to 1295 778 to 1   fully sequenced,   778/778
(100 %)
6 diff
(99.3 %id)
TI_1948076207   .a 635 to 1233 723 to 124   fully sequenced,   600/723
(82 %)
0 diff
(100 %id)
TI_1948076388   .a 635 to 1233 719 to 121   fully sequenced,   599/719
(83 %)
0 diff
(100 %id)
TI_1948076567   .a 635 to 1233 722 to 123   fully sequenced,   600/722
(83 %)
0 diff
(100 %id)
TI_1948076746   .a 635 to 1233 720 to 122   fully sequenced,   599/720
(83 %)
0 diff
(100 %id)
BU634015 cell lines, Chondrosarcoma .a 664 to 1325 679 to 19   AAA   661/663
(99 %)
1 diff
(99.9 %id)
BU621033 cell lines, Chondrosarcoma .a 666 to 1325 678 to 19   AAA   660/663
(99 %)
0 diff
(100 %id)
AW167529 cervix .a 704 to 1325 634 to 15   AAA   620/620
(100 %)
14 diff
(97.8 %id)
AA514559 colon .a 716 to 1326 613 to 2       612/613
(99 %)
13 diff
(97.9 %id)
BG178944 adenocarcinoma, cell line, Prostate .a 720 to 1325 1 to 607       607/625
(97 %)
7 diff
(98.9 %id)
AW304700 brain, three pooled meningiomas .a 725 to 1325 601 to 1       601/601
(100 %)
4 diff
(99.4 %id)
DB553400 hypothalamus .a 732 to 1325 1 to 440     Submitted on the opposite strand 440/440
(100 %)
7 diff
(98.5 %id)
CX866190 embryonic stem .a 760 to 1320 586 to 26   AAA   561/561
(100 %)
2 diff
(99.7 %id)
BM512112 insulinoma, Pancreas .a 765 to 1335 572 to 2     Submitted on the opposite strand 571/572
(99 %)
7 diff
(98.8 %id)
AI984707 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 767 to 1326 561 to 3       559/561
(99 %)
2 diff
(99.7 %id)
CA778042 Pancreas, Purified pancreatic islet .a 774 to 1223 450 to 1   fully sequenced,   450/450
(100 %)
8 diff
(98.3 %id)
BU597864 mixed (pool of 40 RNAs) .a 796 to 1331 2 to 541       540/1013
(53 %)
18 diff
(98.3 %id)
AI741744 pooled .a 803 to 1326 530 to 7       524/530
(98 %)
0 diff
(100 %id)
AW338726 adenocarcinoma, Pancreas .a 803 to 1326 524 to 1       524/524
(100 %)
0 diff
(100 %id)
BE327879 malignant melanoma, metastatic to lymphnode, skin .a 803 to 1327 525 to 1       525/525
(100 %)
0 diff
(100 %id)
TI_159723227   .a 804 to 1325 611 to 90   AAA   522/993
(52 %)
0 diff
(100 %id)
CB242641 Human Lung Epithelial cells, lung .a 804 to 1325 540 to 19   AAA   522/532
(98 %)
0 diff
(100 %id)
AI366116 brain, meningioma .a 806 to 1282 477 to 1       477/477
(100 %)
0 diff
(100 %id)
AW083373 colon, moderately differentiated adenocarcinoma .a 811 to 1325 515 to 1       515/515
(100 %)
2 diff
(99.7 %id)
DB352665.
matches multiple genes
uterus .a 813 to 1325 513 to 1     also hits gene STAB1 513/513
(100 %)
0 diff
(100 %id)
AL138462 uterus .a 837 to 1325 506 to 18   fully sequenced, AAA   489/489
(100 %)
0 diff
(100 %id)
AW089643 ovary, tumor, 5 pooled (see description) .a 845 to 1326 482 to 1       482/482
(100 %)
1 diff
(99.8 %id)
DB571451 hypothalamus .a 851 to 1325 1 to 475     Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
AI015010   .a 857 to 1326 472 to 5       468/472
(99 %)
7 diff
(98.6 %id)
AW475013 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 864 to 1326 464 to 1       464/464
(100 %)
13 diff
(97.2 %id)
AI571124 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 878 to 1326 453 to 5       449/453
(99 %)
0 diff
(100 %id)
AI805604 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 880 to 1325 446 to 1       446/448
(99 %)
2 diff
(99.6 %id)
DB354108   .a 880 to 1325 446 to 1       446/498
(89 %)
4 diff
(99.2 %id)
DB531106 hippocampus .a 881 to 1325 1 to 449     Submitted on the opposite strand 449/449
(100 %)
20 diff
(95.6 %id)
DB526261 testis .a 908 to 1326 1 to 419     Submitted on the opposite strand 419/425
(98 %)
2 diff
(99.6 %id)
BM987820 mixed .a 915 to 1325 429 to 19   AAA   411/415
(99 %)
1 diff
(99.8 %id)
AW246830 lung, small cell carcinoma .a 918 to 1320 414 to 11   AAA   404/404
(100 %)
8 diff
(98.1 %id)
CK903888 Islets of Langerhans, Pancreas .a 928 to 1325 1 to 398       398/398
(100 %)
1 diff
(99.8 %id)
AA719015   .a 940 to 1326 390 to 5       386/390
(98 %)
1 diff
(99.8 %id)
BI964165 Islets of Langerhans, Pancreas .a 944 to 1327 1 to 384   fully sequenced,   384/384
(100 %)
3 diff
(99.3 %id)
BM052911 Islets of Langerhans, Pancreas .a 944 to 1327 1 to 384   AAA   384/384
(100 %)
0 diff
(100 %id)
AA649522 alveolar rhabdomyosarcoma .a 948 to 1322 378 to 6       373/379
(98 %)
2 diff
(99.5 %id)
BF447369 sympathetic trunk .a 953 to 1326 376 to 3       374/376
(99 %)
1 diff
(99.8 %id)
BU786175 insulinoma, Pancreas .a 955 to 1325 386 to 16   AAA   371/377
(98 %)
2 diff
(99.5 %id)
BU629648 cell lines, Chondrosarcoma .a 955 to 1320 384 to 19   AAA   366/366
(100 %)
0 diff
(100 %id)
BF447359 sympathetic trunk .a 959 to 1326 370 to 3       368/370
(99 %)
0 diff
(100 %id)
BP389064 pancreatic islet .a 962 to 1275 1 to 314     Submitted on the opposite strand 314/314
(100 %)
5 diff
(98.5 %id)
AW272368 colon, moderately-differentiated adenocarcinoma .a 968 to 1325 375 to 18   AAA   358/358
(100 %)
6 diff
(98.4 %id)
BM052660 Islets of Langerhans, Pancreas .a 974 to 1327 374 to 21   AAA   354/354
(100 %)
11 diff
(96.9 %id)
BI963866 Islets of Langerhans, Pancreas .a 975 to 1327 373 to 21   fully sequenced, AAA   353/353
(100 %)
6 diff
(98.4 %id)
BG222818 brain, glioblastoma without EGFR amplification .a 977 to 1321 345 to 1       345/345
(100 %)
0 diff
(100 %id)
AI669791 Prostate .a 991 to 1322 338 to 7       332/345
(96 %)
1 diff
(99.8 %id)
AI865978 adenocarcinoma, Pancreas .a 991 to 1326 341 to 2       340/555
(61 %)
5 diff
(99.1 %id)
F27177 pectoral muscle (after mastectomy) .a 995 to 1228 1 to 234       234/234
(100 %)
0 diff
(100 %id)
AA804562 colon .a 1004 to 1320 343 to 26   AAA   318/318
(100 %)
7 diff
(97.8 %id)
BF447204 Prostate .a 1012 to 1325 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AI719457 colon .a 1054 to 1325 272 to 1       272/272
(100 %)
0 diff
(100 %id)
AI865968 adenocarcinoma, Pancreas .a 1055 to 1326 274 to 2       273/274
(99 %)
1 diff
(99.7 %id)
CN260929 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1101 to 1325 1 to 225   AAA   225/225
(100 %)
0 diff
(100 %id)
AI492206 B-cell, chronic lymphotic leukemia .a 1101 to 1326 226 to 1       226/226
(100 %)
0 diff
(100 %id)
AI433680 Kidney .a 1107 to 1325 219 to 1       219/219
(100 %)
6 diff
(97.3 %id)
T50321 fetal spleen, Spleen .a 1108 to 1314 216 to 9       208/216
(96 %)
0 diff
(100 %id)
F18599 pectoral muscle (after mastectomy) .a 1128 to 1328 1 to 201       201/201
(100 %)
1 diff
(99.6 %id)
CR614899 fetal brain .b -11 to 1559 1 to 1571   tiling clone,   1571/1571
(100 %)
0 diff
(100 %id)
BJ995631 hepatoblastoma .b 1 to 407 2 to 408       408/408
(100 %)
0 diff
(100 %id)
BX419611 brain, fetal brain .b 8 to 844 20 to 852   fully sequenced,   833/852
(97 %)
8 diff
(99.1 %id)
BM922627 leukocyte .b 15 to 944 1 to 935 A5V V265C D266G R267K E268G ...     935/1007
(92 %)
42 diff
(95.9 %id)
TI_57217959   .b 19 to 860 33 to 875       843/880
(95 %)
12 diff
(98.7 %id)
BI753325 brain .b 22 to 860 1 to 840       840/845
(99 %)
7 diff
(99.2 %id)
TI_57149266   .b 22 to 832 25 to 916       596/923
(64 %)
19 diff
(98.0 %id)
AL536012 brain, fetal brain .b 24 to 894 1 to 862       862/878
(98 %)
14 diff
(98.5 %id)
BI761472 pooled colon, kidney, stomach .b 27 to 832 1 to 888       592/895
(66 %)
41 diff
(95.5 %id)
CR602960 Placenta Cot 25-normalized .b 36 to 1517 1 to 1482       1482/1482
(100 %)
0 diff
(100 %id)
BX336167 Placenta Cot 25-normalized .b 36 to 801 1 to 760   fully sequenced,   760/760
(100 %)
7 diff
(99.1 %id)
CD514787 White Matter .b 37 to 865 1 to 838       838/881
(95 %)
14 diff
(98.5 %id)
AL565110 adult brain, brain .b 487 to 1541 1057 to 5       1053/1057
(99 %)
7 diff
(99.4 %id)
DB460863 testis .b 534 to 921 1 to 388       388/388
(100 %)
1 diff
(99.8 %id)
TI_44185595   .b 591 to 1438 30 to 882       853/882
(96 %)
20 diff
(97.8 %id)
BX336166 Placenta Cot 25-normalized .b 771 to 1517 749 to 1   fully sequenced,   749/749
(100 %)
26 diff
(96.6 %id)
BX413283 brain, fetal brain .b 814 to 1557 751 to 2   fully sequenced,   750/751
(99 %)
21 diff
(97.3 %id)
BJ995632 hepatoblastoma .b 1039 to 1546 508 to 1       508/508
(100 %)
0 diff
(100 %id)
BF747787 breast .c 1 to 360 21 to 378   tiling clone,   356/378
(94 %)
12 diff
(96.9 %id)
BM756341 Ascites, stomach .c 225 to 855 1 to 631   tiling clone,   631/631
(100 %)
0 diff
(100 %id)
BM747043 Ascites, stomach .c 225 to 757 1 to 533       533/533
(100 %)
0 diff
(100 %id)
BM746858 Ascites, stomach .c 225 to 831 1 to 607       607/607
(100 %)
1 diff
(99.9 %id)
BQ894940 sciatic nerve .d 1 to 874 2 to 879 A216G G217W R218T R219Q S220I ... tiling clone,   879/879
(100 %)
14 diff
(98.5 %id)
DW444784 Liver .d 875 to 1081 19 to 225   tiling clone,   207/225
(92 %)
15 diff
(93.4 %id)
BM741019 Ascites, stomach .d 1060 to 1610 1 to 551   tiling clone,   551/551
(100 %)
4 diff
(99.3 %id)
AK294166 amygdala .e 1 to 1501 2 to 1502 exact tiling clone,   1502/1502
(100 %)
0 diff
(100 %id)
DC312979 amygdala .e 1 to 579 2 to 580       580/580
(100 %)
0 diff
(100 %id)
DA146739 amygdala .e 1 to 556 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CR979044 T-Lymphocytes .e 1 to 645 1 to 645       645/647
(99 %)
1 diff
(99.9 %id)
BQ718392 sympathetic trunk .e 14 to 785 1 to 776       776/912
(85 %)
29 diff
(96.9 %id)
BP426110 small intestine .e 17 to 315 1 to 299     Submitted on the opposite strand 299/299
(100 %)
1 diff
(99.7 %id)
AA581343 bulk alveolar tumor .e 90 to 152 1 to 63       63/64
(98 %)
1 diff
(98.5 %id)
CN297999 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 131 to 377 1 to 247       247/247
(100 %)
0 diff
(100 %id)
BF765647 colon_est .e 176 to 306 141 to 11     Submitted on the opposite strand 131/141
(92 %)
9 diff
(93.7 %id)
BI522720 brain .e 612 to 1307 1 to 695       695/695
(100 %)
3 diff
(99.6 %id)
BX113603 B-cell, chronic lymphotic leukemia .e 655 to 1019 1 to 365       365/365
(100 %)
0 diff
(100 %id)
BQ371664 prostate_normal .e 854 to 1234 8 to 390       383/390
(98 %)
8 diff
(98.0 %id)
BF823141 kidney_tumor .e 1078 to 1380 8 to 309       302/311
(97 %)
15 diff
(95.2 %id)
AA661963 alveolar rhabdomyosarcoma .e 1218 to 1419 202 to 1       202/202
(100 %)
6 diff
(97.1 %id)
AK055216   .f 1 to 2033 2 to 2034 exact tiling clone, available from FLJ,   2034/2034
(100 %)
2 diff
(100.0 %id)
DA472352   .f 1 to 539 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA152940 amygdala .f 24 to 530 2 to 508   tiling clone, capped   507/507
(100 %)
3 diff
(99.5 %id)
DA428869 colon .f 30 to 592 2 to 565   capped   564/564
(100 %)
9 diff
(98.5 %id)
CD243461 testis .f 531 to 1178 90 to 740       651/896
(72 %)
10 diff
(98.9 %id)
BF833361 head_neck .f 724 to 851 132 to 5     Submitted on the opposite strand 128/132
(96 %)
0 diff
(100 %id)
BF833812 head_neck .f 724 to 851 132 to 5     Submitted on the opposite strand 128/132
(96 %)
0 diff
(100 %id)
DB314785   .f 1490 to 2033 545 to 1       545/545
(100 %)
1 diff
(99.9 %id)
DA374320 thalamus .g 1 to 503 5 to 508   capped   507/507
(100 %)
2 diff
(99.7 %id)
DA065023 cerebellum .g 1 to 569 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA134722 alzheimer cortex .g 1 to 520 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
BM805727 brain, hippocampus .g 2 to 574 1 to 576       576/1058
(54 %)
5 diff
(99.6 %id)
BX423123.
matches multiple genes
adult brain, brain .g 12 to 1005 1 to 992   tiling clone, also hits gene SOLH 992/992
(100 %)
4 diff
(99.6 %id)
AF370379   .h 1 to 1510 1 to 1510 exact tiling clone, AAA   1510/1510
(100 %)
6 diff
(99.7 %id)
BX351559 Placenta Cot 25-normalized .h 604 to 1498 908 to 10       899/912
(98 %)
40 diff
(95.7 %id)
BX357157 Placenta Cot 25-normalized .h 635 to 1477 843 to 1       843/851
(99 %)
26 diff
(97.0 %id)
BM689716 eye, Retina Foveal and Macular .h 780 to 1041 3 to 264   fully sequenced,   262/264
(99 %)
5 diff
(98.2 %id)
BQ181630 Knee, Osteoarthritic Cartilage .h 789 to 1503 731 to 19   AAA   713/713
(100 %)
4 diff
(99.5 %id)
BQ007721 Chondrosarcoma, Left Pelvis .h 821 to 1508 706 to 19   tiling clone, AAA   688/688
(100 %)
0 diff
(100 %id)
BM719390 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 872 to 1215 1 to 344   fully sequenced,   344/344
(100 %)
0 diff
(100 %id)
CN298004 embryonic stem cells, DMSO-treated H9 cellline .h 909 to 1458 1 to 550       550/550
(100 %)
0 diff
(100 %id)
AU309713 neuroblastoma .h 958 to 1508 600 to 49   AAA   552/552
(100 %)
3 diff
(99.5 %id)
BF111744 pooled .h 965 to 1509 549 to 5       545/549
(99 %)
0 diff
(100 %id)
BM661684 eye, Retina Foveal and Macular .h 1011 to 1508 516 to 19   fully sequenced, AAA   498/498
(100 %)
0 diff
(100 %id)
BM684225 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .h 1185 to 1508 342 to 19   fully sequenced, AAA   324/324
(100 %)
1 diff
(99.7 %id)
DA376758 thalamus .i 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DB055900 testis .i 1 to 553 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DB193416 ovary, tumor tissue .i 1 to 540 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DB250829 uterus .i 1 to 496 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA136965 alzheimer cortex .i 3 to 541 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DA593788 lung .i 11 to 568 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DB479155 hippocampus .i 13 to 477 1 to 466       466/483
(96 %)
7 diff
(98.6 %id)
DA408082 thalamus .i 14 to 553 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA824097 pericardium .i 14 to 577 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB214886 trachea .i 14 to 556 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
CR978956 T-Lymphocytes .i 22 to 716 1 to 695   tiling clone,   695/699
(99 %)
1 diff
(99.9 %id)
AL545834 placenta, Placenta Cot 25-normalized .i 26 to 881 1 to 857   tiling clone,   857/857
(100 %)
50 diff
(94.2 %id)
CB270321 adipose .i 29 to 283 1 to 255       255/256
(99 %)
5 diff
(98.1 %id)
AA378418 synovial membrane .i 290 to 546 1 to 257       257/257
(100 %)
0 diff
(100 %id)
BI838390 pooled pancreas and spleen .i 343 to 715 280 to 645       576/646
(89 %)
18 diff
(97.3 %id)
TI_57163029   .i 343 to 715 349 to 714       576/715
(80 %)
17 diff
(97.7 %id)
BM312495 Pancreas, Purified pancreatic islet .i 466 to 778 1 to 312       312/312
(100 %)
6 diff
(98.1 %id)
AL571399 placenta, Placenta Cot 25-normalized .i 1140 to 1997 872 to 17   tiling clone,   856/872
(98 %)
11 diff
(98.8 %id)
DB351089 uterus .i 1511 to 2050 540 to 1   tiling clone,   540/540
(100 %)
1 diff
(99.9 %id)
BG705738 brain, hypothalamus .j 1 to 703 7 to 706       706/706
(100 %)
10 diff
(98.6 %id)
BM543627 brain, hippocampus .j 1 to 892 31 to 935   tiling clone,   909/1027
(88 %)
28 diff
(97.3 %id)
BE273347 Kidney, renal cell adenocarcinoma .j 565 to 1124 73 to 629   tiling clone,   557/741
(75 %)
13 diff
(98.3 %id)
DB464774 hippocampus .k 1 to 451 1 to 450   tiling clone,   450/450
(100 %)
8 diff
(98.3 %id)
DA136120 alzheimer cortex .k 10 to 733 2 to 640   tiling clone, capped   639/639
(100 %)
0 diff
(100 %id)
CD390082 embryonic trophoblasts, made from WA01 stemcells .k 12 to 857 20 to 875 L120P S121* tiling clone,   856/876
(97 %)
16 diff
(98.2 %id)
BQ880234 dorsal root ganglia .k 17 to 755 29 to 777       749/954
(78 %)
21 diff
(97.8 %id)
CN298002 embryonic stem cells, cell lines H1, H7, andH9 .k 41 to 723 1 to 682       682/682
(100 %)
1 diff
(99.9 %id)
BF762489 colon_est .k 188 to 402 218 to 3     Submitted on the opposite strand 216/218
(99 %)
0 diff
(100 %id)
AI685059 adenocarcinoma, Pancreas .l 1 to 500 500 to 1 G9X tiling clone,   500/500
(100 %)
0 diff
(100 %id)
CR983334 T-Lymphocytes .m 1 to 717 4 to 722 exact tiling clone,   722/724
(99 %)
4 diff
(99.5 %id)
CN297998 embryonic stem cells, DMSO-treated H9 cellline .n 1 to 614 1 to 616 exact tiling clone,   616/626
(98 %)
3 diff
(99.6 %id)
BF939611 Kidney .o 1 to 370 370 to 1 exact tiling clone,   370/370
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI