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Gene PTPN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
391 representative clones for gene PTPN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB232497 trachea .a 1 to 587 2 to 588   tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
DA184417 amygdala .a 2 to 454 2 to 454   capped   453/453
(100 %)
0 diff
(100 %id)
DA244448 brain .a 2 to 576 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA970637 synovial membrane tissue from rheumatioidarthritis .a 2 to 564 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB077875 testis .a 2 to 564 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AK290638 whole embryo, mainly head .a 5 to 1968 1 to 1964 exact     1964/1964
(100 %)
0 diff
(100 %id)
NM_002827.2   .a 5 to 3322 1 to 3318 exact RefSeq,   3318/3318
(100 %)
0 diff
(100 %id)
AU117677 whole embryo, mainly head .a 6 to 821 2 to 818   capped   817/821
(99 %)
3 diff
(99.7 %id)
DB071887 testis .a 6 to 545 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA185758 amygdala .a 8 to 545 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA440751 tongue, tumor tissue .a 8 to 534 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA868193 Prostate .a 8 to 543 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DB283592 uterus .a 8 to 547 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA329823 hippocampus .a 9 to 566 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BJ997066 hepatoblastoma .a 10 to 432 1 to 424       424/424
(100 %)
1 diff
(99.8 %id)
DB082546 testis .a 11 to 567 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BP257494 heart .a 12 to 592 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA019286   .a 13 to 572 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA218907 brain .a 13 to 659 2 to 648   capped   647/647
(100 %)
0 diff
(100 %id)
DA312786 hippocampus .a 13 to 583 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA370372 thalamus .a 13 to 583 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA410956 thalamus .a 13 to 664 2 to 653   capped   652/652
(100 %)
0 diff
(100 %id)
DA437430 tongue, tumor tissue .a 13 to 521 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA440012 tongue, tumor tissue .a 13 to 585 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA788410 brain .a 13 to 592 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB085182 testis .a 13 to 575 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB096892 testis .a 13 to 584 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
CB988641 Human Placenta, placenta .a 14 to 790 27 to 807       781/808
(96 %)
12 diff
(98.6 %id)
DA725720   .a 14 to 570 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA095752 cerebellum .a 15 to 575 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA119656 cerebellum .a 15 to 491 2 to 478   capped   477/477
(100 %)
0 diff
(100 %id)
DA436730 tongue, tumor tissue .a 15 to 599 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA842805 placenta .a 15 to 589 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA994483 synovial membrane tissue from rheumatioidarthritis .a 15 to 543 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
BP380929   .a 15 to 667 1 to 659       659/692
(95 %)
19 diff
(97.3 %id)
BG723281 testis .a 29 to 741 1 to 713       713/713
(100 %)
6 diff
(99.2 %id)
AK316563 tongue, tumor tissue .a 31 to 1486 1 to 1457 exact     1457/1457
(100 %)
3 diff
(99.8 %id)
CB143219 Liver .a 31 to 616 1 to 586       586/586
(100 %)
0 diff
(100 %id)
CB143249 Liver .a 31 to 651 1 to 621       621/621
(100 %)
0 diff
(100 %id)
DA025119   .a 32 to 483 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
DA043131 bladder .a 32 to 617 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA330968 hippocampus .a 32 to 594 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA446641 tongue, tumor tissue .a 32 to 614 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA756613   .a 32 to 596 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA825400 pericardium .a 32 to 491 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
DA996728   .a 32 to 576 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB127723 thymus .a 32 to 570 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB157842 thymus .a 32 to 612 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB245702 uterus, tumor tissue .a 32 to 598 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA461508 tongue, tumor tissue .a 33 to 605 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA580116   .a 33 to 596 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA756907   .a 33 to 572 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA995056 synovial membrane tissue from rheumatioidarthritis .a 33 to 584 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP199828 brain .a 34 to 614 1 to 581       581/581
(100 %)
0 diff
(100 %id)
CB150520 cervix, Uterine .a 34 to 526 1 to 493       493/493
(100 %)
0 diff
(100 %id)
DA524855 brain .a 34 to 602 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CB112528 Liver .a 34 to 482 1 to 449       449/449
(100 %)
0 diff
(100 %id)
DA726881   .a 34 to 590 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BP315145 mammary gland .a 34 to 615 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA863527 placenta .a 34 to 522 2 to 490   capped   489/489
(100 %)
0 diff
(100 %id)
DA113407 cerebellum .a 35 to 632 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA114671 cerebellum .a 35 to 589 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA314576 hippocampus .a 35 to 595 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA389542 thalamus .a 35 to 616 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA400998 thalamus .a 35 to 601 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA434414 tongue, tumor tissue .a 35 to 483 2 to 450   capped   449/457
(98 %)
1 diff
(99.8 %id)
DA437096 tongue, tumor tissue .a 35 to 633 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DA445690 tongue, tumor tissue .a 35 to 614 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA446780 tongue, tumor tissue .a 35 to 603 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA448057 tongue, tumor tissue .a 35 to 586 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA448835 tongue, tumor tissue .a 35 to 587 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA449737 tongue, tumor tissue .a 35 to 608 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA453471 tongue, tumor tissue .a 35 to 609 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA455979 tongue, tumor tissue .a 35 to 610 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA456219 tongue, tumor tissue .a 35 to 605 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA460649 tongue, tumor tissue .a 35 to 491 2 to 458   capped   457/457
(100 %)
0 diff
(100 %id)
DA514460 brain .a 35 to 577 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA541897 lung .a 35 to 607 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA589378 lung .a 35 to 491 2 to 458   capped   457/457
(100 %)
0 diff
(100 %id)
DA652922   .a 35 to 579 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA690449   .a 35 to 613 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA714273   .a 35 to 584 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA716073   .a 35 to 555 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA723786   .a 35 to 563 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA743897   .a 35 to 597 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA773198 brain .a 35 to 625 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA774841 brain .a 35 to 601 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA807806 brain .a 35 to 618 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA815919   .a 35 to 608 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA819760   .a 35 to 605 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA850706 placenta .a 35 to 563 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA857901 placenta .a 35 to 608 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA858506 placenta .a 35 to 596 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA861754 placenta .a 35 to 591 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA863673 placenta .a 35 to 604 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA863904 placenta .a 35 to 630 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA864869 placenta .a 35 to 591 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA888777   .a 35 to 609 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA992290 synovial membrane tissue from rheumatioidarthritis .a 35 to 581 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA994585 synovial membrane tissue from rheumatioidarthritis .a 35 to 582 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB067456 testis .a 35 to 568 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB069156 testis .a 35 to 586 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB073707 testis .a 35 to 577 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB083862 testis .a 35 to 575 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB151951 thymus .a 35 to 534 2 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
DB155580 thymus .a 35 to 614 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB183376 liver, tumor tissue .a 35 to 612 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB194580 trachea .a 35 to 600 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB212588 trachea .a 35 to 598 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB225866 trachea .a 35 to 613 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB226962 trachea .a 35 to 600 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB232034 trachea .a 35 to 620 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB252598 uterus .a 35 to 602 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB267140 uterus .a 35 to 598 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB275721 uterus .a 35 to 595 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB276325 uterus .a 35 to 576 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA027147   .a 37 to 586 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA394486 thalamus .a 37 to 641 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
DA437904 tongue, tumor tissue .a 37 to 598 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA923007 small intestine .a 37 to 603 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA942283 Spleen .a 37 to 641 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
DB155058 thymus .a 37 to 628 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA446275 tongue, tumor tissue .a 40 to 599 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB157440 thymus .a 42 to 617 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BC015660 Eye, normal, pigmented retinal epithelium .a 43 to 3318 1 to 3276 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 3276/3276
(100 %)
0 diff
(100 %id)
DA861226 placenta .a 43 to 613 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BP284018 bone marrow .a 44 to 626 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP352599   .a 44 to 645 1 to 602       602/602
(100 %)
0 diff
(100 %id)
DA187191 amygdala .a 45 to 584 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA436137 tongue, tumor tissue .a 45 to 596 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA459410 tongue, tumor tissue .a 45 to 387 2 to 344   capped   343/343
(100 %)
0 diff
(100 %id)
DA756421   .a 45 to 555 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA859676 placenta .a 45 to 317 2 to 274   capped   273/273
(100 %)
0 diff
(100 %id)
DA861412 placenta .a 45 to 609 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB154926 thymus .a 45 to 614 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB157708 thymus .a 45 to 646 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DB225058 trachea .a 45 to 620 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA989076 synovial membrane tissue from rheumatioidarthritis .a 46 to 600 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA078624 cerebellum .a 48 to 620 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BU193045 eye, retinoblastoma .a 50 to 670 1 to 621       621/883
(70 %)
0 diff
(100 %id)
CN413562 embryonic stem cells, cell lines H1, H7, andH9 .a 55 to 771 1 to 717       717/717
(100 %)
0 diff
(100 %id)
CN413556 embryonic stem cells, cell lines H1, H7, andH9 .a 58 to 682 1 to 626       626/626
(100 %)
1 diff
(99.9 %id)
BM550346 melanotic melanoma, skin .a 58 to 935 1 to 878       878/1074
(81 %)
12 diff
(98.9 %id)
CR983312 T-Lymphocytes .a 58 to 896 15 to 853       838/853
(98 %)
9 diff
(99.0 %id)
BU173210 eye, retinoblastoma .a 59 to 555 1 to 497       497/501
(99 %)
1 diff
(99.9 %id)
BC018164 Lymph, lymphoma .a 62 to 3318 1 to 3257 exact available from MGC, AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 3257/3257
(100 %)
2 diff
(100.0 %id)
CR992436 T-Lymphocytes .a 62 to 768 1 to 710       710/714
(99 %)
7 diff
(99.1 %id)
BP278274   .a 63 to 644 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA992062 synovial membrane tissue from rheumatioidarthritis .a 63 to 618 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB158294 thymus .a 63 to 650 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DB158908 thymus .a 63 to 616 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB156356 thymus .a 64 to 630 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB152820 thymus .a 66 to 655 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
BG820856 anaplastic oligodendroglioma with 1p/19qloss, brain .a 86 to 224 1 to 139       139/139
(100 %)
0 diff
(100 %id)
M31724   .a 86 to 3339 1 to 3247 exact     3247/3247
(100 %)
9 diff
(99.8 %id)
BQ130674 insulinoma, Pancreas .a 95 to 571 478 to 3   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 476/478
(99 %)
0 diff
(100 %id)
BE504891 pooled germ cell tumors .a 104 to 557 454 to 1       454/454
(100 %)
0 diff
(100 %id)
M33689 placenta .a 107 to 3322 1 to 3215 exact     3215/3215
(100 %)
6 diff
(99.9 %id)
BE672300 pooled germ cell tumors .a 115 to 561 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AW612021 Kidney .a 117 to 562 447 to 2       446/447
(99 %)
0 diff
(100 %id)
BT006752   .a 179 to 1486 1 to 1308 exact     1308/1308
(100 %)
0 diff
(100 %id)
CV025293 mixed .a 179 to 819 1 to 641       641/641
(100 %)
0 diff
(100 %id)
DB207733 trachea .a 276 to 804 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
BQ641690 eye, normal pigmented retinal epithelium .a 293 to 1187 1 to 892       892/903
(98 %)
17 diff
(98.2 %id)
BU151376 eye, normal pigmented retinal epithelium .a 446 to 1370 1 to 933       933/933
(100 %)
15 diff
(98.4 %id)
BE827985 lung_tumor .a 545 to 716 181 to 10       172/183
(93 %)
4 diff
(97.9 %id)
BE827991 lung_tumor .a 545 to 745 221 to 22       200/223
(89 %)
1 diff
(99.6 %id)
DA312893 hippocampus .a 545 to 1093 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA798857 brain .a 576 to 1108 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA685892   .a 631 to 1164 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA489980 brain .a 634 to 1161 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
BM905219 melanotic melanoma, skin .a 653 to 1456 1 to 813       813/1065
(76 %)
12 diff
(98.9 %id)
DA660692   .a 662 to 1151 2 to 491   capped   490/490
(100 %)
0 diff
(100 %id)
AL549823 placenta, Placenta Cot 25-normalized .a 701 to 1737 1 to 1026       1026/1121
(91 %)
17 diff
(98.5 %id)
BP266146 thyroid .a 736 to 1314 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BG753703 eye, normal pigmented retinal epithelium .a 782 to 1683 1 to 891       891/923
(96 %)
37 diff
(96.0 %id)
BQ673962 epidermoid carcinoma, cell line, salivary gland .a 790 to 1720 1 to 942       942/944
(99 %)
24 diff
(97.5 %id)
BQ674082 epidermoid carcinoma, cell line, salivary gland .a 790 to 1615 1 to 837       837/889
(94 %)
21 diff
(97.7 %id)
DB223551 trachea .a 852 to 1401 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AU130745   .a 886 to 1599 2 to 715   capped   714/725
(98 %)
7 diff
(99.1 %id)
DA674992   .a 902 to 1488 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA739161   .a 936 to 1487 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA064095 cerebellum .a 991 to 1553 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA692877   .a 1074 to 1645 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BF795407 lymph, lymphoma, cell line .a 1187 to 1942 1 to 759       759/1115
(68 %)
22 diff
(98.1 %id)
AW797120 uterus .a 1201 to 1406 209 to 4       206/209
(98 %)
0 diff
(100 %id)
CD368023 Alveolar Macrophage, lung .a 1256 to 1968 731 to 19   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 713/713
(100 %)
0 diff
(100 %id)
BF880693 lung_tumor .a 1392 to 1910 520 to 4     Submitted on the opposite strand 517/520
(99 %)
0 diff
(100 %id)
DA816293   .a 1471 to 2033 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BE562819 endometrium, adenocarcinoma cell line, uterus .a 1549 to 2266 1 to 724       724/1165
(62 %)
12 diff
(99.0 %id)
BQ307662 breast .a 1616 to 1822 240 to 37       204/241
(84 %)
0 diff
(100 %id)
BU726458 eye, RPE and Choroid .a 1714 to 2436 12 to 734   AAA Submitted on the opposite strand 723/734
(98 %)
9 diff
(98.8 %id)
TI_57220969   .a 1764 to 2630 64 to 939       876/941
(93 %)
22 diff
(97.7 %id)
BI756140 brain .a 1768 to 2630 1 to 872       872/874
(99 %)
21 diff
(97.6 %id)
BQ434012 embryonal carcinoma, cell line, testis .a 1777 to 2688 1 to 917       917/917
(100 %)
17 diff
(98.2 %id)
AW999247 breast_normal .a 1856 to 2116 264 to 4     Submitted on the opposite strand 261/264
(98 %)
0 diff
(100 %id)
AL573868 placenta, Placenta Cot 25-normalized .a 2241 to 3309 1064 to 1       1064/1125
(94 %)
24 diff
(97.9 %id)
BM691273 eye, RPE and Choroid .a 2664 to 3310 652 to 7     Submitted on the opposite strand 646/652
(99 %)
0 diff
(100 %id)
AU152644   .a 2810 to 3339 528 to 1       528/528
(100 %)
13 diff
(97.6 %id)
BJ997067 hepatoblastoma .a 2940 to 3301 362 to 1       362/362
(100 %)
0 diff
(100 %id)
BJ993187 hepatoblastoma .b 1 to 467 1 to 467   tiling clone,   467/467
(100 %)
0 diff
(100 %id)
BJ993188 hepatoblastoma .b 1281 to 1782 502 to 1   tiling clone,   502/502
(100 %)
1 diff
(99.9 %id)
AK299830 brain .c 1 to 1632 1 to 1632 exact tiling clone,   1632/1632
(100 %)
0 diff
(100 %id)
DC377228 brain .c 1 to 549 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC377236 brain .c 1 to 573 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DA931164 Spleen .c 1344 to 2142 2 to 799   tiling clone, capped   798/800
(99 %)
7 diff
(99.2 %id)
BQ435223 melanotic melanoma, skin .c 1790 to 2604 11 to 828   tiling clone,   818/829
(98 %)
4 diff
(99.6 %id)
BF894165 marrow .c 1890 to 2234 346 to 1     Submitted on the opposite strand 346/353
(98 %)
20 diff
(94.4 %id)
BG002470 placenta_normal .c 1890 to 2245 361 to 6       356/368
(96 %)
0 diff
(100 %id)
AI611145 pooled germ cell tumors .c 1897 to 2197 301 to 1       301/301
(100 %)
0 diff
(100 %id)
BF803743 colon_ins .c 1901 to 2252 380 to 27     Submitted on the opposite strand 354/380
(93 %)
0 diff
(100 %id)
AA005020 liver and spleen .c 1986 to 2614 1 to 630       630/631
(99 %)
6 diff
(99.1 %id)
CR738016 liver and spleen .c 2001 to 2657 1 to 657       657/657
(100 %)
0 diff
(100 %id)
CR747792 Kidney .c 2001 to 2494 1 to 494       494/494
(100 %)
0 diff
(100 %id)
N91628 liver and spleen .c 2002 to 2458 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
BG680937 skin, squamous cell carcinoma .c 2052 to 2366 1 to 315       315/315
(100 %)
0 diff
(100 %id)
BG752795 eye, normal pigmented retinal epithelium .c 2115 to 2847 1 to 733       733/733
(100 %)
6 diff
(99.2 %id)
BU527129 epidermoid carcinoma, cell line, lung .c 2120 to 2898 34 to 824       791/980
(80 %)
37 diff
(96.3 %id)
TI_159723563   .c 2133 to 3194 1132 to 78   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 1055/1055
(100 %)
33 diff
(96.9 %id)
BP305601   .c 2175 to 2803 1 to 629       629/629
(100 %)
0 diff
(100 %id)
BG502846 embryonal carcinoma, testis .c 2236 to 2999 1 to 759       759/772
(98 %)
8 diff
(99.0 %id)
AA381416   .c 2240 to 2532 1 to 293       293/293
(100 %)
1 diff
(99.7 %id)
TI_154097244   .c 2271 to 3215 1004 to 60       945/1220
(77 %)
0 diff
(100 %id)
R37203 placenta .c 2296 to 2586 1 to 292       292/292
(100 %)
3 diff
(99.0 %id)
BM049707 carcinoma, cell line, Prostate .c 2299 to 3009 1 to 708       708/708
(100 %)
9 diff
(98.8 %id)
BE076540 breast .c 2303 to 2934 1 to 632       632/632
(100 %)
16 diff
(97.5 %id)
BF757988 colon .c 2318 to 2672 32 to 386       355/396
(89 %)
10 diff
(97.5 %id)
TI_151811799   .c 2330 to 2821 81 to 565   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 485/490
(98 %)
5 diff
(99.0 %id)
BF689832 melanotic melanoma, high MDR (cell line), skin .c 2340 to 3097 1 to 750       750/795
(94 %)
12 diff
(98.5 %id)
FN075462 breast carcinoma .c 2362 to 2453 1 to 92       92/92
(100 %)
0 diff
(100 %id)
AW243145 Kidney .c 2401 to 3194 792 to 1       792/792
(100 %)
23 diff
(97.1 %id)
BM924917 pooled colon, kidney, stomach .c 2404 to 3217 20 to 832       813/855
(95 %)
5 diff
(99.5 %id)
AI913603 Kidney .c 2425 to 3194 768 to 1       768/768
(100 %)
11 diff
(98.6 %id)
AI479001 B-cell, chronic lymphotic leukemia .c 2435 to 3195 754 to 1       754/754
(100 %)
16 diff
(97.9 %id)
BP332336 renal proximal tubule .c 2435 to 3014 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
CB048947 Prostate .c 2440 to 2868 4 to 433   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 430/433
(99 %)
7 diff
(98.4 %id)
AA029531 heart .c 2452 to 2796 1 to 349       349/392
(89 %)
6 diff
(98.5 %id)
N50311 multiple sclerosis lesions .c 2462 to 2713 1 to 254       254/261
(97 %)
3 diff
(98.9 %id)
AW103475 ovary, tumor, 5 pooled (see description) .c 2483 to 3194 709 to 1       709/709
(100 %)
16 diff
(97.8 %id)
AA243361 germinal center B cell .c 2485 to 2857 1 to 363   fully sequenced,   363/363
(100 %)
2 diff
(99.5 %id)
AA929060 adenocarcinoma, colon .c 2502 to 3215 736 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 723/723
(100 %)
22 diff
(97.0 %id)
CA428085 Bone, Subchondral Bone .c 2513 to 3215 721 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 703/703
(100 %)
0 diff
(100 %id)
CK299715 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2521 to 3212 692 to 1       692/692
(100 %)
0 diff
(100 %id)
BU623838 cell lines, Enchondroma .c 2521 to 3217 698 to 2       697/698
(99 %)
0 diff
(100 %id)
CA309848 Alveolar Macrophage, lung .c 2522 to 3215 712 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 694/694
(100 %)
0 diff
(100 %id)
CA945104 Human Lung Epithelial cells, lung .c 2524 to 3194 687 to 17   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 671/671
(100 %)
0 diff
(100 %id)
BQ447383 Knee, Osteoarthritic Cartilage .c 2532 to 3212 681 to 1       681/681
(100 %)
1 diff
(99.9 %id)
CA453372 mixed (pool of 40 RNAs) .c 2536 to 3061 1 to 536       536/721
(74 %)
21 diff
(97.1 %id)
AI693387 carcinoid, lung .c 2539 to 3191 661 to 10       652/665
(98 %)
0 diff
(100 %id)
AI038939 liver and spleen .c 2542 to 3194 650 to 1       650/650
(100 %)
9 diff
(98.7 %id)
AA779318 liver and spleen .c 2545 to 3197 653 to 1       653/653
(100 %)
17 diff
(97.4 %id)
BM923314 pooled colon, kidney, stomach .c 2549 to 3240 55 to 750       696/1465
(47 %)
19 diff
(98.8 %id)
BE644863 pooled .c 2552 to 3215 666 to 1       666/666
(100 %)
14 diff
(97.9 %id)
AI569873 Kidney .c 2553 to 3199 641 to 3       639/644
(99 %)
0 diff
(100 %id)
AW612072 carcinoid, lung .c 2557 to 2923 1 to 369     Submitted on the opposite strand 369/369
(100 %)
5 diff
(98.7 %id)
AA193539 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2590 to 3004 1 to 421   fully sequenced,   421/421
(100 %)
15 diff
(96.5 %id)
AW008263 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 2608 to 3213 607 to 3       605/607
(99 %)
0 diff
(100 %id)
BM998076 lung, Metastatic Chondrosarcoma .c 2608 to 3215 626 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 608/608
(100 %)
1 diff
(99.9 %id)
AI417181 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2609 to 3217 608 to 6       603/638
(94 %)
0 diff
(100 %id)
BG576435 breast, mammary adenocarcinoma, cell line .c 2609 to 3212 1 to 602       602/605
(99 %)
4 diff
(99.4 %id)
BM998095 lung, Metastatic Chondrosarcoma .c 2617 to 3215 617 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 599/599
(100 %)
0 diff
(100 %id)
BU626711 Alveolar Macrophage, lung .c 2617 to 3217 608 to 8       601/608
(98 %)
0 diff
(100 %id)
AA005021 liver and spleen .c 2623 to 3207 592 to 1       592/593
(99 %)
13 diff
(97.9 %id)
AI206753   .c 2624 to 3221 601 to 6       596/601
(99 %)
0 diff
(100 %id)
AA837308 germinal center B cell .c 2625 to 3199 581 to 5       577/581
(99 %)
0 diff
(100 %id)
AI399845 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2645 to 3215 583 to 16   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 568/577
(98 %)
12 diff
(98.0 %id)
TI_154005851   .c 2646 to 3215 663 to 94   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 570/570
(100 %)
2 diff
(99.7 %id)
BU785894 Pancreas, Purified pancreatic islet .c 2649 to 2904 1 to 256   fully sequenced,   256/256
(100 %)
0 diff
(100 %id)
BQ028446 mixed .c 2671 to 3212 542 to 1       542/542
(100 %)
1 diff
(99.9 %id)
AW089741 ovary, tumor, 5 pooled (see description) .c 2673 to 3196 524 to 1       524/528
(99 %)
2 diff
(99.7 %id)
AI264598 Kidney .c 2686 to 3079 395 to 1       395/433
(91 %)
28 diff
(93.6 %id)
AW951025   .c 2687 to 3193 511 to 1     Submitted on the opposite strand 511/517
(98 %)
39 diff
(92.5 %id)
AI262681 adenocarcinoma, colon .c 2689 to 3217 527 to 4       524/545
(96 %)
0 diff
(100 %id)
BE092293 breast .c 2690 to 3008 328 to 9     Submitted on the opposite strand 320/328
(97 %)
0 diff
(100 %id)
AI400687 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2693 to 3195 494 to 1       494/494
(100 %)
20 diff
(96.0 %id)
BP392340 pancreatic islet .c 2695 to 3194 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
AI096725 brain, glioblastoma (pooled) .c 2709 to 3217 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AA830353 germinal center B cell .c 2712 to 3190 483 to 1       483/483
(100 %)
42 diff
(91.4 %id)
AI200939   .c 2712 to 3194 494 to 12   AAA Possibly primed on the genome, locally A rich (17/19 A in genome downstream of last aligned base) 483/483
(100 %)
0 diff
(100 %id)
AA682284 liver and spleen .c 2714 to 3206 494 to 1       494/494
(100 %)
7 diff
(98.6 %id)
AA036759 uterus .c 2715 to 3181 10 to 478   fully sequenced,   469/478
(98 %)
6 diff
(98.8 %id)
AA258652 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2715 to 2842 10 to 137       128/140
(91 %)
1 diff
(99.3 %id)
AW273004 lung, two pooled squamous cell carcinomas .c 2721 to 3212 492 to 1       492/492
(100 %)
5 diff
(99.0 %id)
AI278321 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2722 to 3192 471 to 1       471/471
(100 %)
0 diff
(100 %id)
N54866 multiple sclerosis lesions .c 2729 to 2953 1 to 230   fully sequenced,   230/230
(100 %)
1 diff
(99.6 %id)
AI830633 2 pooled tumors (clear cell type), Kidney .c 2730 to 3219 494 to 7       488/494
(98 %)
0 diff
(100 %id)
AI081014 liver and spleen .c 2731 to 3194 460 to 1       460/461
(99 %)
18 diff
(96.1 %id)
AA532858 colon .c 2743 to 3217 482 to 9       474/528
(89 %)
0 diff
(100 %id)
AI378358 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2744 to 3216 473 to 1       473/473
(100 %)
2 diff
(99.6 %id)
BF055515 pooled .c 2753 to 3205 453 to 1       453/453
(100 %)
2 diff
(99.6 %id)
AI364462 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 2754 to 3197 442 to 1       442/462
(95 %)
8 diff
(98.3 %id)
AI347117 adenocarcinoma, colon .c 2756 to 3217 465 to 4       462/465
(99 %)
0 diff
(100 %id)
BE710354 head_neck .c 2757 to 3102 9 to 354       346/354
(97 %)
6 diff
(98.4 %id)
DW463230 Liver .c 2758 to 3104 17 to 363       347/363
(95 %)
6 diff
(98.4 %id)
AI206733   .c 2760 to 3221 467 to 6       539/607
(88 %)
6 diff
(99.1 %id)
AI367913 adenocarcinoma, colon .c 2761 to 3217 457 to 2       456/457
(99 %)
0 diff
(100 %id)
AA743235 germinal center B cell .c 2766 to 3200 476 to 47   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 430/448
(95 %)
20 diff
(95.6 %id)
DB547821 hippocampus .c 2769 to 3206 1 to 438     Submitted on the opposite strand 438/438
(100 %)
0 diff
(100 %id)
N47103 multiple sclerosis lesions .c 2769 to 3211 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
BF056032 pooled germ cell tumors .c 2770 to 3217 450 to 3       448/450
(99 %)
0 diff
(100 %id)
AI362289 brain, glioblastoma (pooled) .c 2772 to 3217 448 to 3       446/448
(99 %)
0 diff
(100 %id)
AI694750 carcinoid, lung .c 2778 to 3206 446 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 429/429
(100 %)
1 diff
(99.8 %id)
AW118350 brain, tumor, 5 pooled (see description) .c 2780 to 3215 437 to 1       437/437
(100 %)
3 diff
(99.4 %id)
AI765097 colon, colon tumor, RER+ .c 2786 to 3213 428 to 1       428/428
(100 %)
4 diff
(99.1 %id)
AI206940 pooled germ cell tumors .c 2788 to 3211 418 to 3       416/418
(99 %)
0 diff
(100 %id)
AI362409 Kidney, renal cell tumor .c 2791 to 3200 410 to 1       410/410
(100 %)
16 diff
(96.1 %id)
TI_151731934   .c 2791 to 3215 493 to 86   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 408/408
(100 %)
0 diff
(100 %id)
AI769252 pooled .c 2797 to 3217 421 to 1       421/496
(84 %)
3 diff
(99.4 %id)
AI796229 Kidney .c 2797 to 3187 398 to 8       391/398
(98 %)
0 diff
(100 %id)
AA813442   .c 2818 to 3217 401 to 2       400/401
(99 %)
0 diff
(100 %id)
AA252649 germinal center B cell .c 2827 to 3194 370 to 1   fully sequenced,   370/370
(100 %)
0 diff
(100 %id)
AI473241 Kidney .c 2832 to 3217 402 to 11       392/403
(97 %)
0 diff
(100 %id)
EC572229 Prostate .c 2838 to 2941 1 to 105       105/105
(100 %)
2 diff
(98.1 %id)
CB048946 Prostate .c 2838 to 3215 402 to 25   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 378/378
(100 %)
1 diff
(99.8 %id)
H68687 liver and spleen .c 2866 to 3200 340 to 1       340/344
(98 %)
8 diff
(97.7 %id)
BU785576 Pancreas, Purified pancreatic islet .c 2874 to 3215 342 to 1   fully sequenced,   342/342
(100 %)
3 diff
(99.2 %id)
AA653567   .c 2882 to 3211 332 to 1       332/332
(100 %)
24 diff
(92.8 %id)
BG150160 carcinoid, lung .c 2884 to 3204 321 to 1       321/321
(100 %)
0 diff
(100 %id)
DB332370 Spleen .c 2890 to 3401 514 to 1   tiling clone,   514/516
(99 %)
10 diff
(98.1 %id)
R37204 placenta .c 2891 to 3216 331 to 1       331/334
(99 %)
9 diff
(97.4 %id)
AA029465 heart .c 2896 to 3205 316 to 1       316/316
(100 %)
23 diff
(92.8 %id)
N50648 multiple sclerosis lesions .c 2923 to 3192 282 to 1   fully sequenced,   282/282
(100 %)
10 diff
(96.5 %id)
N68737 liver and spleen .c 2924 to 3207 287 to 1       287/287
(100 %)
3 diff
(99.0 %id)
EC545145 Prostate .c 2950 to 3054 18 to 121       104/121
(85 %)
6 diff
(95.1 %id)
H98128 melanocyte .c 2961 to 3091 131 to 1       131/131
(100 %)
3 diff
(97.8 %id)
AA193493 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2974 to 3195 226 to 1   fully sequenced,   226/226
(100 %)
0 diff
(100 %id)
T29012 blood, white blood cells .c 2974 to 3200 258 to 31   AAA Submitted on the opposite strand 228/228
(100 %)
2 diff
(99.2 %id)
AA057376 uterus .c 2977 to 3193 224 to 1   fully sequenced,   224/224
(100 %)
7 diff
(96.9 %id)
AI347679 2 pooled tumors (clear cell type), Kidney .c 2982 to 3204 232 to 10       223/232
(96 %)
0 diff
(100 %id)
AA603086 normal prostate, Prostate .c 2985 to 3213 230 to 1       230/230
(100 %)
21 diff
(90.9 %id)
BF197401 Kidney .c 3019 to 3192 177 to 4       174/178
(97 %)
0 diff
(100 %id)
FN118714 breast carcinoma .c 3043 to 3125 1 to 84       84/84
(100 %)
3 diff
(96.5 %id)
AA258653 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3091 to 3191 102 to 1       102/107
(95 %)
3 diff
(97.2 %id)
FN080483 breast carcinoma .c 3096 to 3162 1 to 66       66/67
(98 %)
3 diff
(95.6 %id)
EC509542 Prostate .c 3140 to 3197 1 to 57       57/57
(100 %)
1 diff
(98.3 %id)
BQ720828 sympathetic trunk .d 1 to 874 1 to 881 G212D C239M G240W L241F T243H ... tiling clone,   881/925
(95 %)
13 diff
(98.6 %id)
BG026183 Bone, osteosarcoma, cell line .d 604 to 1260 1 to 653   tiling clone,   653/904
(72 %)
17 diff
(98.2 %id)
BQ710862 Spleen .d 1202 to 2172 1 to 973   tiling clone,   973/977
(99 %)
6 diff
(99.4 %id)
BQ710394 Spleen .d 1212 to 2130 1 to 924       924/934
(98 %)
17 diff
(98.2 %id)
BF877627 lung_tumor .d 1580 to 2049 469 to 3     Submitted on the opposite strand 467/482
(96 %)
0 diff
(100 %id)
BQ709414 Spleen .d 1587 to 2423 1 to 843   tiling clone,   843/861
(97 %)
8 diff
(99.1 %id)
DA856319 placenta .e 1 to 582 2 to 584 V138R V139C V140G H141A C142L ... tiling clone, capped   583/583
(100 %)
1 diff
(99.9 %id)
BQ448224 Knee, Osteoarthritic Cartilage .f-u 1 to 727 724 to 1 E4R M5W E8S F9S E10S ... tiling clone,   724/724
(100 %)
10 diff
(98.7 %id)
AA400535   .g 1 to 559 1 to 559 P54A tiling clone, fully sequenced,   559/559
(100 %)
2 diff
(99.7 %id)
AA400489   .g 152 to 566 419 to 12 H58T C59Q S60C A61S G62I ... tiling clone, fully sequenced, AAA   408/408
(100 %)
10 diff
(97.6 %id)
DB149008 thymus .g 522 to 1029 2 to 509   tiling clone, capped   508/508
(100 %)
1 diff
(99.9 %id)
BP192887 brain .h 1 to 579 4 to 582 exact tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
DB158538 thymus .i-u 1 to 522 2 to 524   tiling clone, capped   523/523
(100 %)
1 diff
(99.9 %id)
BM687349 eye, optic nerve .i-u 10 to 501 9 to 501   tiling clone, Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 493/501
(98 %)
1 diff
(99.9 %id)
AW850635 colon .i-u 615 to 1248 1 to 633   tiling clone,   633/633
(100 %)
3 diff
(99.6 %id)
AW367407 head_neck .i-u 629 to 1154 9 to 532   tiling clone,   524/532
(98 %)
6 diff
(98.9 %id)
BM672492 eye, optic nerve .i-u 689 to 1039 370 to 19   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 352/352
(100 %)
3 diff
(99.2 %id)
DB163042 thymus .i-u 762 to 1353 2 to 593   capped   592/592
(100 %)
3 diff
(99.5 %id)
AW367528 head_neck .i-u 782 to 1369 588 to 7       582/589
(98 %)
0 diff
(100 %id)
DA484976 brain .i-u 865 to 1426 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA789235 brain .i-u 896 to 1483 2 to 589   capped   588/588
(100 %)
3 diff
(99.5 %id)
DA370198 thalamus .i-u 926 to 1484 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
AI697691 carcinoid, lung .i-u 950 to 1245 1 to 296     Submitted on the opposite strand 296/296
(100 %)
3 diff
(99.0 %id)
BF110785 carcinoid, lung .i-u 950 to 1244 1 to 295     Submitted on the opposite strand 295/295
(100 %)
1 diff
(99.7 %id)
BF938981 carcinoid, lung .i-u 950 to 1244 1 to 295     Submitted on the opposite strand 295/295
(100 %)
1 diff
(99.7 %id)
BX101007 liver and spleen .i-u 991 to 1728 739 to 1   AAA Submitted on the opposite strand 739/749
(98 %)
4 diff
(99.5 %id)
H40534 liver and spleen .i-u 994 to 1429 1 to 443     Submitted on the opposite strand 443/443
(100 %)
9 diff
(98.0 %id)
AI040494 liver and spleen .i-u 1002 to 1127 1 to 126     Submitted on the opposite strand 126/126
(100 %)
0 diff
(100 %id)
DA879166 Prostate .i-u 1010 to 1571 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
R92445 liver and spleen .i-u 1027 to 1263 1 to 239     Submitted on the opposite strand 239/273
(87 %)
7 diff
(97.5 %id)
W92859 liver and spleen .i-u 1036 to 1371 1 to 347     Submitted on the opposite strand 347/348
(99 %)
11 diff
(96.9 %id)
DB141130 thymus .i-u 1055 to 1552 2 to 501   capped   500/500
(100 %)
2 diff
(99.6 %id)
CB044617 colon, juvenile granulosa tumor .i-u 1062 to 1716 12 to 666   tiling clone, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 655/666
(98 %)
6 diff
(99.1 %id)
DA943352 Spleen .i-u 1109 to 1682 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA735952   .i-u 1145 to 1938 2 to 793   capped   792/797
(99 %)
13 diff
(98.4 %id)
DA619705   .i-u 1153 to 1732 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BG109555 Bone, osteosarcoma, cell line .i-u 1245 to 1918 34 to 709       676/718
(94 %)
11 diff
(98.5 %id)
R92536 liver and spleen .i-u 1283 to 1725 479 to 15     Submitted on the opposite strand 465/484
(96 %)
0 diff
(100 %id)
W92858 liver and spleen .i-u 1325 to 1693 374 to 1     Submitted on the opposite strand 374/374
(100 %)
5 diff
(98.7 %id)
DA588913 lung .i-u 1347 to 1919 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
D31135   .i-u 1523 to 1722 1 to 200       200/200
(100 %)
3 diff
(98.5 %id)
CF136530 lymph .i-u 1546 to 1691 8 to 153       146/153
(95 %)
6 diff
(96.1 %id)
BX641947   .i-u 1568 to 2096 1 to 529   tiling clone, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 529/529
(100 %)
0 diff
(100 %id)
BX478786   .i-u 1571 to 2042 8 to 480       473/480
(98 %)
6 diff
(98.8 %id)
BF222916 pooled germ cell tumors .i-u 1634 to 1980 407 to 61       347/407
(85 %)
0 diff
(100 %id)
GD158425   .i-u 1706 to 1813 112 to 5     Submitted on the opposite strand 108/116
(93 %)
0 diff
(100 %id)
AU138481 placenta .i-u 2301 to 2982 2 to 683   tiling clone, capped   682/682
(100 %)
5 diff
(99.3 %id)
BX641948   .i-u 3114 to 3758 663 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 645/645
(100 %)
1 diff
(99.9 %id)
CR597778 T cells (Jurkat cell line) Cot10-normalized .i-u 3115 to 3948 1 to 834   tiling clone,   834/834
(100 %)
0 diff
(100 %id)
AL558741 T cells from T cell leukemia .i-u 3115 to 3948 1 to 834   fully sequenced,   834/834
(100 %)
4 diff
(99.6 %id)
AI765849 2 pooled tumors (clear cell type), Kidney .i-u 3137 to 3952 816 to 3       814/823
(98 %)
0 diff
(100 %id)
CD368755 Alveolar Macrophage, lung .i-u 3146 to 3764 637 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 619/619
(100 %)
0 diff
(100 %id)
DB368357   .i-u 3219 to 3749 526 to 1       526/528
(99 %)
20 diff
(96.3 %id)
DB315140 brain .i-u 3228 to 3737 512 to 1       512/514
(99 %)
2 diff
(99.7 %id)
AW009790 colon .i-u 3231 to 3951 718 to 1       718/718
(100 %)
23 diff
(96.8 %id)
CB044616 colon, juvenile granulosa tumor .i-u 3274 to 3743 486 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 470/470
(100 %)
0 diff
(100 %id)
AI823502 Kidney .i-u 3304 to 3952 647 to 1   tiling clone,   647/647
(100 %)
13 diff
(98.0 %id)
AI184255 placenta .i-u 3314 to 3946 641 to 7       635/682
(93 %)
0 diff
(100 %id)
AI770122 2 pooled tumors (clear cell type), Kidney .i-u 3348 to 3946 597 to 2       596/597
(99 %)
0 diff
(100 %id)
AI253029 Kidney .i-u 3407 to 3947 550 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 537/564
(95 %)
8 diff
(98.6 %id)
AL558740 T cells from T cell leukemia .i-u 3511 to 3919 409 to 1   fully sequenced,   409/409
(100 %)
7 diff
(98.3 %id)
AW768910 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .i-u 3532 to 3950 421 to 1       421/421
(100 %)
2 diff
(99.6 %id)
DB378264 placenta .i-u 3555 to 3947 393 to 1       393/393
(100 %)
8 diff
(98.0 %id)
AI761202 2 pooled tumors (clear cell type), Kidney .i-u 3584 to 3952 370 to 2       369/370
(99 %)
0 diff
(100 %id)
AI867676 Prostate .i-u 3602 to 3947 344 to 1       344/344
(100 %)
2 diff
(99.5 %id)
AI474453 Prostate .i-u 3657 to 3950 309 to 14   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 296/296
(100 %)
11 diff
(96.3 %id)
AI470804 Kidney .i-u 3678 to 3950 273 to 1       273/273
(100 %)
1 diff
(99.7 %id)
AI590278 Kidney .i-u 3678 to 3950 273 to 1       273/273
(100 %)
1 diff
(99.7 %id)
FN165797 breast carcinoma .i-u 3751 to 3862 1 to 107       107/107
(100 %)
6 diff
(94.4 %id)
AA069973   .i-u 3852 to 3951 1 to 100       100/100
(100 %)
0 diff
(100 %id)
AU138200 placenta .j 1 to 683 2 to 689 exact tiling clone, capped   688/688
(100 %)
9 diff
(98.7 %id)
DB377822 placenta .j 1308 to 1860 553 to 1   tiling clone,   553/554
(99 %)
29 diff
(94.8 %id)
DA620812   .k 1 to 581 2 to 582 exact tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
BU430170 lymph .k 45 to 565 1 to 521 exact     521/521
(100 %)
6 diff
(98.9 %id)
TI_154151527   .k 52 to 713 80 to 738 exact tiling clone,   659/659
(100 %)
13 diff
(98.1 %id)
DA495203 brain .k 113 to 597 2 to 486   capped   485/485
(100 %)
2 diff
(99.6 %id)
AI803199 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 148 to 672 524 to 1   tiling clone,   524/524
(100 %)
3 diff
(99.5 %id)
CT002231 T-Lymphocytes .k 200 to 645 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
DB510670.
matches multiple genes
testis .l-u 1 to 279 279 to 1   tiling clone, also hits gene blyvey 279/279
(100 %)
3 diff
(99.0 %id)
AA987294 carcinoid, lung .l-u 269 to 685 417 to 1 exact tiling clone,   417/417
(100 %)
0 diff
(100 %id)
DB092836 testis .m 1 to 551 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DC400722 testis .m 22 to 554 1 to 534       534/534
(100 %)
1 diff
(99.9 %id)
DC403052 testis .m 22 to 566 1 to 545   tiling clone,   545/545
(100 %)
0 diff
(100 %id)
BF155421 head_neck .n 1 to 258 32 to 290 exact tiling clone,   259/307
(84 %)
8 diff
(97.4 %id)
262 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i-u, .j, .k, .l-u, .m, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI