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Gene PRRX2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
52 supporting clones for gene PRRX2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG338097 leiomyosarcoma cell line, uterus .a 1 to 731 1 to 725       725/757
(95 %)
17 diff
(97.8 %id)
BC014645 Uterus, leiomyosarcoma .a 2 to 1308 1 to 1307   tiling clone, available from MGC, AAA   1307/1307
(100 %)
0 diff
(100 %id)
NM_016307.3   .a 2 to 1308 1 to 1307   RefSeq, AAA   1307/1307
(100 %)
0 diff
(100 %id)
CB050584 Prostate .a 43 to 237 1 to 195   fully sequenced,   195/195
(100 %)
5 diff
(97.5 %id)
BQ672611 epidermoid carcinoma, cell line, salivary gland .a 84 to 503 5 to 423       419/1010
(41 %)
6 diff
(99.5 %id)
AI420043 Prostate .a 85 to 227 143 to 1       143/143
(100 %)
0 diff
(100 %id)
AI674514 Prostate .a 85 to 220 136 to 1       136/136
(100 %)
0 diff
(100 %id)
BG055248 Prostate .a 85 to 227 143 to 1       143/143
(100 %)
1 diff
(99.4 %id)
AI917607 colon, colon tumor, RER+ .a 88 to 220 133 to 1       133/133
(100 %)
0 diff
(100 %id)
CB050583 Prostate .a 110 to 241 132 to 1   fully sequenced,   132/132
(100 %)
1 diff
(99.3 %id)
AI751740 Bone, Hip .a 122 to 530 1 to 409       409/409
(100 %)
5 diff
(98.8 %id)
AF061970   .a 199 to 1308 1 to 1110       1110/1110
(100 %)
2 diff
(99.9 %id)
AI470349 pooled .a 238 to 677 1 to 440     Submitted on the opposite strand 440/441
(99 %)
2 diff
(99.6 %id)
AI923085 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 238 to 795 1 to 558     Submitted on the opposite strand 558/558
(100 %)
0 diff
(100 %id)
BE645185 pooled .a 238 to 906 1 to 669     Submitted on the opposite strand 669/669
(100 %)
2 diff
(99.8 %id)
TI_154003517   .a 238 to 846 80 to 688     Submitted on the opposite strand 609/689
(88 %)
46 diff
(93.4 %id)
TI_157598713   .a 238 to 745 53 to 561     Submitted on the opposite strand 509/1436
(35 %)
14 diff
(99.1 %id)
TI_157604508   .a 238 to 830 82 to 678     Submitted on the opposite strand 597/1104
(54 %)
15 diff
(98.7 %id)
TI_157609365   .a 238 to 822 78 to 663     Submitted on the opposite strand 586/663
(88 %)
13 diff
(98.1 %id)
TI_157610428   .a 238 to 949 48 to 769     Submitted on the opposite strand 722/1093
(66 %)
36 diff
(96.8 %id)
BF060961 pooled .a 243 to 493 1 to 251     Submitted on the opposite strand 251/274
(91 %)
9 diff
(96.8 %id)
AY662674   .a 485 to 981 308 to 804       497/804
(61 %)
6 diff
(99.3 %id)
U81600   .a 496 to 1308 1 to 813       813/813
(100 %)
6 diff
(99.3 %id)
BM694729 eye, RPE and Choroid .a 497 to 780 1 to 284   fully sequenced,   284/284
(100 %)
0 diff
(100 %id)
BM800161 leiomyosarcoma, uterus .a 502 to 1308 37 to 844   AAA   808/844
(95 %)
11 diff
(98.7 %id)
W52596 senescent fibroblast .a 524 to 947 1 to 435       435/490
(88 %)
34 diff
(93.1 %id)
BG117458 adenocarcinoma, cell line, Liver .a 614 to 1308 775 to 42   AAA Submitted on the opposite strand 734/1034
(70 %)
25 diff
(97.6 %id)
AI697307 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 621 to 1309 689 to 1       689/690
(99 %)
9 diff
(98.7 %id)
BU624928 cell lines, Enchondroma .a 649 to 1308 678 to 19   AAA   660/674
(97 %)
3 diff
(99.6 %id)
AW167940 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 676 to 1309 636 to 1       636/636
(100 %)
9 diff
(98.6 %id)
AI379188 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 703 to 1280 577 to 1       577/577
(100 %)
11 diff
(98.1 %id)
BU731241 eye, RPE and Choroid .a 750 to 1309 577 to 19   fully sequenced, AAA   559/559
(100 %)
0 diff
(100 %id)
AI808278 pooled .a 757 to 1312 557 to 2       556/557
(99 %)
2 diff
(99.7 %id)
BM716252 eye, optic nerve .b-u 1 to 453 1 to 453 exact tiling clone,   453/453
(100 %)
0 diff
(100 %id)
TI_151770193   .b-u 6 to 639 84 to 717 exact fully sequenced, AAA   634/717
(88 %)
6 diff
(99.2 %id)
BF446146 Prostate .b-u 181 to 637 467 to 11   AAA   457/465
(98 %)
5 diff
(99.0 %id)
AI936570 pooled .b-u 188 to 641 455 to 2   tiling clone,   454/455
(99 %)
0 diff
(100 %id)
AI751739 Bone, Hip .b-u 209 to 637 437 to 9       429/437
(98 %)
0 diff
(100 %id)
BX097188 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b-u 213 to 637 439 to 15   AAA   425/425
(100 %)
0 diff
(100 %id)
AI669686 Prostate .b-u 217 to 641 427 to 3       425/427
(99 %)
0 diff
(100 %id)
AA194990 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b-u 228 to 302 75 to 1       75/76
(98 %)
0 diff
(100 %id)
BM990403 lung, Metastatic Chondrosarcoma .b-u 249 to 637 408 to 19   AAA   390/398
(97 %)
2 diff
(99.5 %id)
AW450137   .b-u 284 to 609 343 to 18   AAA   326/343
(95 %)
0 diff
(100 %id)
TI_151747229   .b-u 296 to 637 427 to 86   fully sequenced, AAA   342/342
(100 %)
2 diff
(99.5 %id)
BU536776 mixed (pool of 40 RNAs) .b-u 308 to 639 1 to 332   AAA   332/332
(100 %)
3 diff
(99.1 %id)
AI868311 pooled .b-u 319 to 639 330 to 8       323/334
(96 %)
0 diff
(100 %id)
BF939198 Prostate .b-u 320 to 638 319 to 1       319/319
(100 %)
0 diff
(100 %id)
AI203915   .b-u 324 to 640 317 to 1       317/317
(100 %)
2 diff
(99.4 %id)
AW182104 pooled .b-u 352 to 641 293 to 2       292/293
(99 %)
0 diff
(100 %id)
AI766481 colon, colon tumor, RER+ .b-u 369 to 637 283 to 13   AAA   271/271
(100 %)
11 diff
(96.0 %id)
AW014255   .b-u 380 to 637 275 to 18   AAA   258/267
(96 %)
0 diff
(100 %id)
AW973065   .b-u 397 to 621 225 to 1     Submitted on the opposite strand 225/225
(100 %)
6 diff
(97.4 %id)
AI821507 normal prostate, Prostate .b-u 417 to 637 234 to 14   AAA   221/221
(100 %)
0 diff
(100 %id)
AA548667 normal prostate, Prostate .b-u 418 to 637 233 to 14   AAA   220/220
(100 %)
0 diff
(100 %id)
ES310981 scalp interfollicular dermis, skin Gene PRRX2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI