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Gene PPARGC1ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
144 supporting clones for gene PPARGC1A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA299660 uterus .a 4673 to 5047 1 to 375       375/375
(100 %)
1 diff
(99.8 %id)
AA299661 uterus .a 5887 to 6309 423 to 1       423/433
(97 %)
4 diff
(99.1 %id)
AA413411   .a 1310 to 1456 152 to 5     Submitted on the opposite strand 148/152
(97 %)
0 diff
(100 %id)
AB061325 skeletal muscle .b 1 to 2627 1 to 2627 G205S tiling clone,   2627/2627
(100 %)
4 diff
(99.9 %id)
BP195674 brain .a 3293 to 3874 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AF159714   .a 90 to 2605 1 to 2516 G482S     2516/2516
(100 %)
3 diff
(99.9 %id)
AF186379   .a 80 to 3045 1 to 2968 exact tiling clone,   2968/2974
(99 %)
3 diff
(99.9 %id)
AK024990 colon .a 4515 to 6315 1 to 1800   tiling clone, available from FLJ, AAA   1800/1800
(100 %)
3 diff
(99.9 %id)
AK095100 hippocampus .j-u 113 to 2884 1 to 2772 Q44R tiling clone, available from FLJ,   2772/2772
(100 %)
2 diff
(100.0 %id)
AK296591   .c 1 to 1265 1 to 1265 exact     1265/1265
(100 %)
0 diff
(100 %id)
AK301883 testis .d 1 to 1369 2 to 1370 exact tiling clone,   1370/1370
(100 %)
1 diff
(100.0 %id)
AK309261   .c 1 to 1442 1 to 1442 exact tiling clone,   1442/1442
(100 %)
0 diff
(100 %id)
AW892730 nervous_normal .a 727 to 1003 1 to 274       274/274
(100 %)
17 diff
(93.8 %id)
AW957016   .a 4674 to 5202 1 to 530       530/530
(100 %)
27 diff
(95.0 %id)
BE165716 head_neck .a 5197 to 5504 318 to 11     Submitted on the opposite strand 308/318
(96 %)
0 diff
(100 %id)
BE165719 head_neck .a 5211 to 5669 8 to 465       458/465
(98 %)
8 diff
(98.3 %id)
BF356446 head_neck .a 83 to 346 264 to 3       262/265
(98 %)
0 diff
(100 %id)
BF912770 uterus_tumor .a 1917 to 2444 14 to 541       528/541
(97 %)
9 diff
(98.4 %id)
BF912774 uterus_tumor .a 1913 to 2452 10 to 549       540/550
(98 %)
21 diff
(96.2 %id)
BF917039 uterus_tumor .a 3832 to 4226 1 to 395       395/395
(100 %)
5 diff
(98.8 %id)
BQ352688 head_neck .q 1 to 325 1 to 325 exact tiling clone,   325/325
(100 %)
1 diff
(99.7 %id)
DA093033 cerebellum .a 30 to 597 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA132082 alzheimer cortex .a 3779 to 4336 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA159962 amygdala .a 3289 to 3869 2 to 582   tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
DA169876 amygdala .a 4280 to 4839 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA183765 amygdala .a 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
DA244705 brain .a 1638 to 2232 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA267585 caudate nucleus .a 594 to 1135 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA309475 hippocampus .j-u 114 to 579 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DB308404 hippocampus .j-u 2338 to 2884 548 to 1       548/548
(100 %)
2 diff
(99.7 %id)
DA313077 hippocampus .h 1 to 528 2 to 529 exact tiling clone, capped   528/528
(100 %)
0 diff
(100 %id)
DA349161 substantia nigra .n-u 1 to 486 2 to 486 exact tiling clone, capped   485/485
(100 %)
1 diff
(99.8 %id)
DA361844 subthalamic nucleus .a 4394 to 4942 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
BX097314 pooled .j-u 1 to 401 1 to 401   tiling clone, AAA   401/401
(100 %)
0 diff
(100 %id)
BX105309   .l 1 to 547 1 to 547 exact tiling clone, AAA   547/547
(100 %)
0 diff
(100 %id)
BX115564 parathyroid gland, parathyroid tumor .a 4684 to 5460 1 to 777   tiling clone,   777/777
(100 %)
1 diff
(99.9 %id)
BX282397 pooled colon, kidney, stomach .g 6 to 503 1 to 498 exact     498/498
(100 %)
0 diff
(100 %id)
CD238051 Pituitary .a 6117 to 6316 1 to 200   AAA   200/296
(67 %)
2 diff
(99.4 %id)
DC425044   .a 41 to 596 1 to 556       556/556
(100 %)
0 diff
(100 %id)
AU279925   .a 41 to 604 1 to 564       564/564
(100 %)
0 diff
(100 %id)
CN304579 embryonic stem cells, DMSO-treated H9 cellline .a 754 to 1192 1 to 439       439/439
(100 %)
4 diff
(99.1 %id)
BP220388 colon .a 4515 to 5088 1 to 574       574/574
(100 %)
5 diff
(99.2 %id)
BP220971 colon .a 3621 to 4200 1 to 580       580/580
(100 %)
22 diff
(96.3 %id)
D17135   .a 4810 to 5122 1 to 314       314/318
(98 %)
7 diff
(97.8 %id)
AL705445 human skeletal muscle .p 1 to 359 1 to 359 exact tiling clone,   359/359
(100 %)
1 diff
(99.8 %id)
BX486502   .a 3467 to 4137 1 to 672       672/672
(100 %)
1 diff
(99.9 %id)
DW423144 Liver .j-u 1228 to 1503 17 to 292       276/292
(94 %)
6 diff
(98.0 %id)
R58577   .a 4183 to 4322 1 to 141       141/141
(100 %)
4 diff
(97.2 %id)
D59328   .a 6030 to 6309 279 to 1       279/279
(100 %)
3 diff
(99.0 %id)
BP391356 pancreatic islet .a 5984 to 6316 1 to 336     Submitted on the opposite strand 336/338
(99 %)
4 diff
(98.9 %id)
BP391430 pancreatic islet .a 6099 to 6315 1 to 217     Submitted on the opposite strand 217/217
(100 %)
4 diff
(98.2 %id)
BP241082 Liver .a 4051 to 4607 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
BP258303 heart .a 4585 to 5156 1 to 572   tiling clone,   572/572
(100 %)
2 diff
(99.7 %id)
N89666 lung .a 6157 to 6309 154 to 1       154/172
(89 %)
4 diff
(97.7 %id)
W21405 lung .a 4682 to 5004 1 to 328       328/328
(100 %)
7 diff
(97.9 %id)
N89673 lung .a 6158 to 6309 151 to 1       151/151
(100 %)
3 diff
(98.1 %id)
W21597 lung .a 4682 to 4879 1 to 198       198/200
(99 %)
2 diff
(99.0 %id)
AA188803   .a 2819 to 3034 219 to 4       216/219
(98 %)
0 diff
(100 %id)
AA188859   .a 760 to 924 1 to 165       165/165
(100 %)
0 diff
(100 %id)
AA548632 adrenal adenoma, adrenal gland .a 5883 to 6315 433 to 1       433/433
(100 %)
2 diff
(99.6 %id)
AA608934   .j-u 882 to 998 119 to 3       117/119
(98 %)
0 diff
(100 %id)
AA631263 colon, colon tumor RER+ .a 4707 to 5194 487 to 1       487/487
(100 %)
1 diff
(99.8 %id)
AA877587 colon, colon tumor RER+ .a 5780 to 6316 537 to 2       536/537
(99 %)
0 diff
(100 %id)
AA865326 2 pooled tumors (clear cell type), Kidney .a 566 to 807 253 to 13   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 241/253
(95 %)
0 diff
(100 %id)
AI033607 parathyroid gland, parathyroid tumor .a 5860 to 6316 464 to 8       457/464
(98 %)
0 diff
(100 %id)
AI204953 schizophrenic brain S-11 frontal lobe .a 5631 to 6001 1 to 372     Submitted on the opposite strand 372/372
(100 %)
2 diff
(99.5 %id)
AI126125   .a 3855 to 4239 387 to 3   tiling clone,   385/387
(99 %)
0 diff
(100 %id)
AI218503 pooled .o 1 to 403 408 to 0 exact tiling clone,   406/408
(99 %)
0 diff
(100 %id)
AI431440 adenocarcinoma, Pancreas .a 6217 to 6315 116 to 18   AAA   99/99
(100 %)
0 diff
(100 %id)
AI800226 Kidney .a 5825 to 6315 513 to 23   AAA   491/491
(100 %)
0 diff
(100 %id)
AI433318 Kidney .a 5828 to 6315 488 to 1       488/488
(100 %)
1 diff
(99.8 %id)
AI582569 adenocarcinoma, Pancreas .a 4905 to 5300 407 to 12   AAA   396/396
(100 %)
0 diff
(100 %id)
AI913521 Kidney .a 5801 to 6316 517 to 2   tiling clone,   516/517
(99 %)
0 diff
(100 %id)
AI634016 Kidney .a 2624 to 3036 415 to 3       413/415
(99 %)
0 diff
(100 %id)
AI677685 pooled .j-u 33 to 402 373 to 3       371/373
(99 %)
0 diff
(100 %id)
AI807349 pooled .o 1 to 403 408 to 0 D38A     406/408
(99 %)
0 diff
(100 %id)
AI873410 pooled .a 4656 to 4988 333 to 1       333/333
(100 %)
4 diff
(98.8 %id)
AI741530 pooled .a 5768 to 6315 564 to 17   AAA   548/548
(100 %)
1 diff
(99.9 %id)
AI763250 2 pooled tumors (clear cell type), Kidney .a 3630 to 4151 1 to 522     Submitted on the opposite strand 522/522
(100 %)
2 diff
(99.7 %id)
AI935378 Kidney .a 1937 to 2650 716 to 1       716/716
(100 %)
8 diff
(98.9 %id)
AI949860 2 pooled tumors (clear cell type), Kidney .a 3761 to 4237 487 to 11   AAA   477/477
(100 %)
3 diff
(99.4 %id)
AW003738 Kidney .a 5799 to 6309 533 to 24   AAA   510/510
(100 %)
9 diff
(98.3 %id)
AW827187 hepatic adenoma, Liver .a 6008 to 6309 1 to 302   AAA   302/302
(100 %)
0 diff
(100 %id)
AW235557 Kidney .a 5865 to 6314 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AW299670 Kidney .a 3291 to 3732 442 to 1       442/442
(100 %)
0 diff
(100 %id)
AW466942 2 pooled tumors (clear cell type), Kidney .a 3749 to 4239 492 to 2       491/492
(99 %)
0 diff
(100 %id)
AW611558 Kidney .a 5867 to 6311 446 to 1       446/446
(100 %)
1 diff
(99.8 %id)
BF511658   .a 249 to 804 580 to 24   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 557/582
(95 %)
2 diff
(99.7 %id)
BE048390 Kidney .a 5743 to 6262 601 to 74   AAA   528/590
(89 %)
11 diff
(98.2 %id)
BE463573 Kidney .a 5827 to 6316 497 to 8       490/497
(98 %)
0 diff
(100 %id)
CB046265 2 pooled tumors (clear cell type), Kidney .a 5800 to 6309 538 to 29   fully sequenced, AAA   510/510
(100 %)
0 diff
(100 %id)
CB046266 2 pooled tumors (clear cell type), Kidney .a 5443 to 5830 5 to 392   fully sequenced,   388/392
(98 %)
6 diff
(98.5 %id)
CB051420 Prostate .a 5894 to 6312 431 to 14       418/440
(95 %)
0 diff
(100 %id)
BF194858 Kidney .a 6084 to 6316 237 to 2       236/407
(57 %)
0 diff
(100 %id)
BF694401 muscle (skeletal) .a 4678 to 5331 1 to 634       634/890
(71 %)
36 diff
(96.0 %id)
BF670894 muscle (skeletal) .a 3213 to 3960 1 to 758   tiling clone,   758/872
(86 %)
40 diff
(95.5 %id)
BG167673 hypernephroma, cell line, Kidney .a 4430 to 5184 1 to 734       734/882
(83 %)
34 diff
(96.2 %id)
BC029800 Colon, Kidney, Stomach, adult, whole pooled .g 6 to 2386 1 to 2378 exact tiling clone, available from MGC, AAA   2378/2378
(100 %)
2 diff
(100.0 %id)
BI763266 pooled colon, kidney, stomach .g 7 to 717 1 to 712 exact available from MGC,   712/716
(99 %)
6 diff
(99.2 %id)
BI763360 pooled colon, kidney, stomach .a 3436 to 4134 1 to 700       700/700
(100 %)
9 diff
(98.8 %id)
BI763277 pooled colon, kidney, stomach .a 3435 to 4227 1 to 789       789/789
(100 %)
13 diff
(98.4 %id)
BQ030344 lung, Metastatic Chondrosarcoma .a 5808 to 6315 526 to 19   AAA   508/508
(100 %)
1 diff
(99.9 %id)
CD102110 Pooled-Skin .a 5230 to 5972 1 to 749       749/750
(99 %)
11 diff
(98.6 %id)
TI_57150026   .a 3438 to 4134 35 to 732       698/732
(95 %)
6 diff
(99.2 %id)
TI_57150098   .g 1 to 717 26 to 742 exact     717/746
(96 %)
7 diff
(99.1 %id)
TI_57150109   .a 3434 to 4227 28 to 817       790/817
(96 %)
6 diff
(99.3 %id)
BP274964 Kidney .a 29 to 592 1 to 564       564/564
(100 %)
0 diff
(100 %id)
CB124825 Liver .a 4010 to 4640 1 to 631       631/631
(100 %)
1 diff
(99.9 %id)
CB134860 Liver .a 3383 to 4010 1 to 628       628/628
(100 %)
2 diff
(99.7 %id)
CB137722 Liver .a 3383 to 3811 1 to 429       429/429
(100 %)
0 diff
(100 %id)
CB138266 Liver .a 3383 to 3880 1 to 498       498/498
(100 %)
0 diff
(100 %id)
CB135630 Liver .a 3383 to 4036 1 to 654       654/654
(100 %)
3 diff
(99.6 %id)
CB135766 Liver .a 3383 to 3972 1 to 590       590/590
(100 %)
0 diff
(100 %id)
CB147181 Liver .a 3383 to 3979 1 to 597       597/597
(100 %)
0 diff
(100 %id)
CB146647 Liver .a 3383 to 4047 1 to 665       665/665
(100 %)
0 diff
(100 %id)
CB147305 Liver .a 3383 to 3914 1 to 532       532/532
(100 %)
2 diff
(99.7 %id)
CB147326 Liver .a 3383 to 3881 1 to 499       499/499
(100 %)
1 diff
(99.8 %id)
CB147411 Liver .a 3383 to 4036 1 to 654       654/654
(100 %)
0 diff
(100 %id)
CB164328 Liver .a 5769 to 6309 553 to 14   AAA Submitted on the opposite strand 540/540
(100 %)
1 diff
(99.9 %id)
NM_013261.3   .a 1 to 6316 3 to 6318 exact RefSeq,   6318/6318
(100 %)
0 diff
(100 %id)
BP312095 brain .a 4716 to 5297 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP349885 brain .a 379 to 965 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
DR003509 hippocampus .e 1 to 584 8 to 591 N150X tiling clone,   584/591
(98 %)
7 diff
(98.9 %id)
DC395890 testis .d 1 to 567 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DB030515 testis .f 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DB044131 testis .k 1 to 575 2 to 577 exact tiling clone, capped   576/576
(100 %)
2 diff
(99.7 %id)
DB057366 testis .a 825 to 1366 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB068233 testis .i 1 to 545 2 to 546 exact tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
DB151585 thymus .a 30 to 595 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
TI_149273463   .a 4567 to 5196 717 to 88   AAA   630/1003
(62 %)
2 diff
(99.9 %id)
TI_149273937   .a 5884 to 6315 518 to 87   AAA   432/817
(52 %)
0 diff
(100 %id)
TI_149300901   .a 5459 to 6315 927 to 79   AAA   849/973
(87 %)
15 diff
(98.5 %id)
DB237259 trachea .a 30 to 499 2 to 473   capped   472/472
(100 %)
2 diff
(99.6 %id)
BU675833 lung, Primary Lung Epithelial Cells .a 4583 to 5196 632 to 19   AAA   614/614
(100 %)
1 diff
(99.9 %id)
BM968341 lung, Primary Lung Epithelial Cells .a 5884 to 6315 450 to 19   AAA   432/440
(98 %)
0 diff
(100 %id)
BM976883 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 5656 to 6315 678 to 19   AAA   660/660
(100 %)
1 diff
(99.9 %id)
CA311752 Human Lung Epithelial cells, lung .a 3980 to 4606 1 to 628   tiling clone, Submitted on the opposite strand 628/633
(99 %)
3 diff
(99.6 %id)
CA314951 Human Lung Epithelial cells, lung .a 5922 to 6309 407 to 19   AAA   389/441
(88 %)
11 diff
(97.6 %id)
CB241002 Human Lung Epithelial cells, lung .a 4710 to 5195 504 to 19   AAA   486/495
(98 %)
0 diff
(100 %id)
BM668778 eye, human retina .j-u 853 to 1476 636 to 11   fully sequenced, AAA   626/626
(100 %)
8 diff
(98.8 %id)
BM703779 eye, human retina .j-u 585 to 883 10 to 308 exact tiling clone, fully sequenced,   299/308
(97 %)
6 diff
(98.1 %id)
BM717833.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 1 to 527 1 to 527 exact tiling clone, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base), also hits gene storjee 527/527
(100 %)
0 diff
(100 %id)
TI_151703687   .j-u 785 to 1472 721 to 41       681/1159
(58 %)
0 diff
(100 %id)
AF106698   .i 1 to 545 2 to 546   tiling clone, Suspected internal deletion, this clone was ignored 545/545
(100 %)
0 diff
(100 %id)
BG197856   .a 30 to 595 2 to 568     Suspected internal deletion, this clone was ignored 567/567
(100 %)
1 diff
(99.9 %id)
DA265001 caudate nucleus .a 4567 to 5196 717 to 88   capped Suspected internal deletion, this clone was ignored 630/1003
(62 %)
2 diff
(99.9 %id)
AV684498 hepatocellular carcinoma .a 5884 to 6315 518 to 87     This clone was ignored 432/817
(52 %)
0 diff
(100 %id)
AV685627 hepatocellular carcinoma .a 5459 to 6315 927 to 79     This clone was ignored 849/973
(87 %)
15 diff
(98.5 %id)
AV696384 hepatocellular carcinoma .a 30 to 499 2 to 473     This clone was ignored 472/472
(100 %)
2 diff
(99.6 %id)
AV700329 hepatocellular carcinoma .a 4583 to 5196 632 to 19     This clone was ignored 614/614
(100 %)
1 diff
(99.9 %id)
AV652293 corresponding non cancerous liver tissue .a 4583 to 5196 632 to 19     Submitted on the opposite strand, submitted on the opposite strand 614/614
(100 %)
1 diff
(99.9 %id)
BM968341 lung, Primary Lung Epithelial Cells .a 5884 to 6315 450 to 19   AAA   432/440
(98 %)
0 diff
(100 %id)
BM968341 lung, Primary Lung Epithelial Cells .a 5884 to 6315 450 to 19   AAA   432/440
(98 %)
0 diff
(100 %id)
BM976883 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 5656 to 6315 678 to 19   AAA   660/660
(100 %)
1 diff
(99.9 %id)
BM976883 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 5656 to 6315 678 to 19   AAA   660/660
(100 %)
1 diff
(99.9 %id)
CA311752 Human Lung Epithelial cells, lung .a 3980 to 4606 1 to 628   tiling clone, Submitted on the opposite strand 628/633
(99 %)
3 diff
(99.6 %id)
CA311752 Human Lung Epithelial cells, lung .a 3980 to 4606 1 to 628   tiling clone, Submitted on the opposite strand 628/633
(99 %)
3 diff
(99.6 %id)
CA314951 Human Lung Epithelial cells, lung .a 5922 to 6309 407 to 19   AAA   389/441
(88 %)
11 diff
(97.6 %id)
CA314951 Human Lung Epithelial cells, lung .a 5922 to 6309 407 to 19   AAA   389/441
(88 %)
11 diff
(97.6 %id)
CB241002 Human Lung Epithelial cells, lung .a 4710 to 5195 504 to 19   AAA   486/495
(98 %)
0 diff
(100 %id)
CB241002 Human Lung Epithelial cells, lung .a 4710 to 5195 504 to 19   AAA   486/495
(98 %)
0 diff
(100 %id)
BM668778 eye, human retina .j-u 853 to 1476 636 to 11   fully sequenced, AAA   626/626
(100 %)
8 diff
(98.8 %id)
BM668778 eye, human retina .j-u 853 to 1476 636 to 11   fully sequenced, AAA   626/626
(100 %)
8 diff
(98.8 %id)
BM703779 eye, human retina .j-u 585 to 883 10 to 308 exact tiling clone, fully sequenced,   299/308
(97 %)
6 diff
(98.1 %id)
BM703779 eye, human retina .j-u 585 to 883 10 to 308 exact tiling clone, fully sequenced,   299/308
(97 %)
6 diff
(98.1 %id)
BM717833.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 1 to 527 1 to 527 exact tiling clone, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base), also hits gene storjee 527/527
(100 %)
0 diff
(100 %id)
BM717833.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 1 to 527 1 to 527 exact tiling clone, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base), also hits gene storjee 527/527
(100 %)
0 diff
(100 %id)
TI_151703687   .j-u 785 to 1472 721 to 41       681/1159
(58 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l, .m-u, .n-u, .o, .p, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI