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Gene PPARGTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
165 supporting clones for gene PPARG back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB455643 testis .a 1 to 479 1 to 479   tiling clone,   479/479
(100 %)
3 diff
(99.4 %id)
NM_005037.5   .a 1 to 1818 1 to 1818 exact RefSeq,   1818/1818
(100 %)
0 diff
(100 %id)
CR599329 Placenta Cot 25-normalized .a 52 to 1773 1 to 1722   tiling clone,   1722/1722
(100 %)
0 diff
(100 %id)
AL543579 placenta, Placenta Cot 25-normalized .a 52 to 871 1 to 819   fully sequenced,   819/819
(100 %)
1 diff
(99.9 %id)
X90563 placenta .a 72 to 1803 1 to 1732   tiling clone, AAA   1732/1732
(100 %)
2 diff
(99.9 %id)
L40904 bone marrow aspirate .a 85 to 1810 84 to 1808       1725/1808
(95 %)
11 diff
(99.4 %id)
CA407008 adipose .a 136 to 661 1 to 527       527/531
(99 %)
7 diff
(98.7 %id)
AL570116 placenta, Placenta Cot 25-normalized .a 841 to 1773 936 to 1   fully sequenced,   936/936
(100 %)
4 diff
(99.6 %id)
TI_57197188   .b 1 to 900 27 to 928       902/930
(96 %)
17 diff
(98.2 %id)
BI820841 pooled brain, lung, testis .b 5 to 900 1 to 899   tiling clone,   899/901
(99 %)
9 diff
(99.1 %id)
D83233 adipose .b 31 to 1648 60 to 1679 M36I P37A M213I P214A A241Q ...     1620/1679
(96 %)
14 diff
(99.2 %id)
NM_015869.4   .b 40 to 1859 1 to 1820 exact RefSeq,   1820/1820
(100 %)
0 diff
(100 %id)
U79012 heart .b 41 to 1648 1 to 1608 exact tiling clone,   1608/1608
(100 %)
3 diff
(99.9 %id)
AB451337   .b 131 to 1647 1 to 1517       1517/1518
(99 %)
1 diff
(100.0 %id)
AB451486   .b 131 to 1645 1 to 1515       1515/1515
(100 %)
0 diff
(100 %id)
U63415   .b 131 to 1648 1 to 1518 exact     1518/1518
(100 %)
0 diff
(100 %id)
DR006643 Spleen .c 1 to 713 1 to 713   tiling clone,   713/715
(99 %)
8 diff
(98.9 %id)
NM_138712.3   .c 12 to 1903 1 to 1892 exact RefSeq,   1892/1892
(100 %)
0 diff
(100 %id)
AL523434 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 22 to 921 1 to 898   fully sequenced,   898/898
(100 %)
9 diff
(99.0 %id)
BQ925271 large cell carcinoma, lung .c 25 to 530 1 to 512   AAA   512/704
(72 %)
11 diff
(98.5 %id)
BG323933 Kidney, renal cell adenocarcinoma .c 28 to 573 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
BX363320   .c 34 to 1144 1 to 1101       1099/1135
(96 %)
24 diff
(97.9 %id)
AK290581   .c 87 to 1890 1 to 1804 exact tiling clone,   1804/1804
(100 %)
0 diff
(100 %id)
DA032530   .c 87 to 662 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA548552   .c 88 to 656 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DA427252 colon .c 89 to 650 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BG436329 placenta .c 115 to 965 1 to 848       848/888
(95 %)
46 diff
(94.9 %id)
BM925902 brain .c 117 to 785 1 to 669       669/1102
(60 %)
21 diff
(98.1 %id)
BM744007 Ascites, stomach .c 214 to 789 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
BM790089 stomach .c 214 to 764 1 to 551       551/551
(100 %)
0 diff
(100 %id)
AY222643   .c 247 to 1692 310 to 1755 exact     1446/1755
(82 %)
5 diff
(99.8 %id)
AK223528   .c 254 to 1726 1 to 1473 M25V     1473/1473
(100 %)
1 diff
(100.0 %id)
AB307692   .c 259 to 1692 1 to 1434 S464G     1434/1434
(100 %)
3 diff
(99.8 %id)
BT007281   .c 259 to 1692 1 to 1434 exact     1434/1434
(100 %)
0 diff
(100 %id)
CV025109 mixed .c 259 to 904 1 to 645       645/645
(100 %)
1 diff
(99.9 %id)
TI_1948132066   .c 259 to 1019 127 to 890       764/1354
(56 %)
25 diff
(98.2 %id)
TI_1948132067   .c 259 to 1220 127 to 1097       971/1160
(83 %)
39 diff
(96.7 %id)
TI_1948132384   .c 259 to 975 122 to 852       731/1435
(50 %)
29 diff
(98.0 %id)
TI_1948132385   .c 259 to 1119 137 to 1008       872/1202
(72 %)
26 diff
(97.9 %id)
TI_1948132696   .c 259 to 977 127 to 847       721/1355
(53 %)
24 diff
(98.3 %id)
TI_1948132697   .c 259 to 1092 125 to 964       840/1216
(69 %)
24 diff
(98.1 %id)
TI_1948133006   .c 259 to 1004 124 to 871       748/1334
(56 %)
15 diff
(98.9 %id)
TI_1948133007   .c 259 to 1100 126 to 981       856/1257
(68 %)
30 diff
(97.7 %id)
BG166774 hypernephroma, cell line, Kidney .c 376 to 1208 12 to 843       832/888
(93 %)
35 diff
(96.1 %id)
CR605352 Placenta Cot 25-normalized .c 435 to 1859 1 to 1425       1425/1425
(100 %)
0 diff
(100 %id)
CR609113 placenta .c 435 to 1836 1 to 1402       1402/1402
(100 %)
0 diff
(100 %id)
AL549611 placenta, Placenta Cot 25-normalized .c 435 to 1168 1 to 721   fully sequenced,   721/721
(100 %)
3 diff
(99.6 %id)
BX424883 placenta .c 436 to 1444 1 to 1010       1010/1116
(90 %)
7 diff
(99.4 %id)
BQ722874 sympathetic trunk .c 542 to 1339 1 to 803       803/872
(92 %)
10 diff
(98.9 %id)
BM846609 myeloma .c 548 to 940 1 to 394       394/394
(100 %)
7 diff
(98.3 %id)
BU526666 epidermoid carcinoma, cell line, lung .c 572 to 1444 1 to 874       874/948
(92 %)
7 diff
(99.3 %id)
TI_154186846   .c 601 to 1443 49 to 893       845/1051
(80 %)
27 diff
(97.5 %id)
CF125309 Chondrosarcoma Lung Metastasis cell lines, lung .c 603 to 1285 1 to 684       684/684
(100 %)
5 diff
(99.3 %id)
BE904444 epithelioid carcinoma, Pancreas .c 638 to 1172 1 to 540       540/1011
(53 %)
9 diff
(99.2 %id)
BG742110 skin .c 694 to 1486 1 to 793       793/793
(100 %)
6 diff
(99.3 %id)
BE535401 cervix .c 744 to 1426 1 to 685       685/826
(82 %)
10 diff
(98.8 %id)
BF755468 colon .c 784 to 960 181 to 8     Submitted on the opposite strand 174/187
(93 %)
0 diff
(100 %id)
BF757674 colon .c 784 to 949 7 to 172       166/172
(96 %)
6 diff
(96.6 %id)
BG179310 adenocarcinoma, cell line, Prostate .c 785 to 1572 1 to 782       782/1088
(71 %)
30 diff
(97.3 %id)
TI_1948132699   .c 789 to 1691 1029 to 128       902/1296
(69 %)
30 diff
(97.7 %id)
TI_1948133009   .c 792 to 1691 1022 to 128       895/1274
(70 %)
32 diff
(97.5 %id)
TI_1948132068   .c 794 to 1691 1022 to 126       897/1287
(69 %)
21 diff
(98.4 %id)
AA088517 colon, tumor .c 807 to 1153 1 to 366       366/366
(100 %)
33 diff
(91.0 %id)
TI_1948133008   .c 826 to 1691 989 to 123       867/1314
(65 %)
22 diff
(98.4 %id)
TI_1948132386   .c 840 to 1691 977 to 125       853/1340
(63 %)
23 diff
(98.3 %id)
BX402493 Placenta Cot 25-normalized .c 848 to 1891 1038 to 1       1038/1075
(96 %)
16 diff
(98.6 %id)
TI_1948132069   .c 857 to 1691 958 to 126       833/1299
(64 %)
29 diff
(97.8 %id)
TI_1948132698   .c 863 to 1691 962 to 122       841/1451
(57 %)
18 diff
(98.8 %id)
BG534958 lung .c 871 to 1571 1 to 716       716/865
(82 %)
31 diff
(96.5 %id)
BX328128   .c 890 to 1806 1 to 911       911/915
(99 %)
27 diff
(97.1 %id)
AL523433 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 891 to 1876 980 to 1   fully sequenced,   980/980
(100 %)
25 diff
(97.5 %id)
AL573383 placenta, Placenta Cot 25-normalized .c 930 to 1873 950 to 1       950/950
(100 %)
2 diff
(99.8 %id)
BF811102 colon_ins .c 971 to 1270 1 to 300       300/300
(100 %)
0 diff
(100 %id)
AW886988 ovary .c 991 to 1534 52 to 590       539/592
(91 %)
17 diff
(97.2 %id)
TI_1948132387   .c 994 to 1691 824 to 129       696/1267
(54 %)
7 diff
(99.5 %id)
TI_227712458   .c 1025 to 1888 940 to 81   AAA   860/1044
(82 %)
15 diff
(98.6 %id)
AA625223 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1042 to 1617 1 to 574       574/574
(100 %)
5 diff
(99.2 %id)
CA428105 Bone, Subchondral Bone .c 1083 to 1896 818 to 19   AAA   800/800
(100 %)
14 diff
(98.3 %id)
BU618129 Bone, Subchondral Bone .c 1104 to 1888 795 to 19   AAA   777/777
(100 %)
7 diff
(99.1 %id)
CA428606 cell lines, Chondrosarcoma .c 1132 to 1888 769 to 19   AAA   751/753
(99 %)
10 diff
(98.7 %id)
AL549707 placenta, Placenta Cot 25-normalized .c 1138 to 1852 718 to 6   fully sequenced,   713/718
(99 %)
0 diff
(100 %id)
H21596 breast .c 1162 to 1554 1 to 403       403/412
(97 %)
11 diff
(97.4 %id)
TI_159722986   .c 1162 to 1888 807 to 83   AAA   725/988
(73 %)
5 diff
(99.5 %id)
BU626490 Alveolar Macrophage, lung .c 1186 to 1885 718 to 19   AAA   700/700
(100 %)
0 diff
(100 %id)
BE182888 head_neck .c 1188 to 1475 296 to 8     Submitted on the opposite strand 289/296
(97 %)
3 diff
(99.0 %id)
CA309719 Alveolar Macrophage, lung .c 1193 to 1888 714 to 19   AAA   696/696
(100 %)
2 diff
(99.8 %id)
CA309113 Alveolar Macrophage, lung .c 1210 to 1888 697 to 19   AAA   679/679
(100 %)
1 diff
(99.9 %id)
CD366997 Alveolar Macrophage, lung .c 1210 to 1888 696 to 19   AAA   678/678
(100 %)
5 diff
(99.3 %id)
BQ021210 lung, Metastatic Chondrosarcoma .c 1213 to 1888 694 to 19   AAA   676/676
(100 %)
1 diff
(99.9 %id)
CD369931 Alveolar Macrophage, lung .c 1252 to 1902 669 to 19   AAA   651/651
(100 %)
3 diff
(99.6 %id)
AA088420 colon, tumor .c 1262 to 1889 623 to 1       623/623
(100 %)
14 diff
(97.8 %id)
BU621824 cell lines, Chondrosarcoma .c 1263 to 1888 643 to 19   AAA   625/625
(100 %)
2 diff
(99.7 %id)
BM995901 lung, Metastatic Chondrosarcoma .c 1270 to 1896 644 to 19   AAA   626/636
(98 %)
1 diff
(99.9 %id)
AI863514 Kidney .c 1300 to 1891 598 to 5       594/598
(99 %)
12 diff
(98.0 %id)
AI123591 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1309 to 1893 585 to 1       585/585
(100 %)
1 diff
(99.9 %id)
AI200451 placenta .c 1351 to 1896 546 to 1       546/546
(100 %)
0 diff
(100 %id)
BQ003677 Chondrosarcoma, Left Pelvis .c 1373 to 1902 548 to 19   AAA   530/530
(100 %)
0 diff
(100 %id)
CD369439 Alveolar Macrophage, lung .c 1374 to 1888 533 to 19   AAA   515/515
(100 %)
1 diff
(99.9 %id)
AW900762 nervous_normal .c 1377 to 1529 1 to 154       154/168
(91 %)
10 diff
(94.1 %id)
AW973364   .c 1380 to 1901 522 to 1     Submitted on the opposite strand 522/522
(100 %)
27 diff
(94.9 %id)
AI767379 2 pooled tumors (clear cell type), Kidney .c 1394 to 1877 485 to 2       484/485
(99 %)
0 diff
(100 %id)
AI749134 colon .c 1402 to 1903 502 to 1       502/505
(99 %)
22 diff
(95.7 %id)
AL574005 placenta, Placenta Cot 25-normalized .c 1411 to 1902 1 to 490       490/490
(100 %)
6 diff
(98.8 %id)
BX102961 colon, moderately-differentiated adenocarcinoma .c 1425 to 1902 492 to 15   AAA   478/478
(100 %)
0 diff
(100 %id)
BQ010877 placenta .c 1428 to 1888 479 to 19   AAA   461/461
(100 %)
4 diff
(99.2 %id)
AI863526 Kidney .c 1436 to 1888 454 to 1       454/558
(81 %)
13 diff
(97.7 %id)
BX453827 placenta .c 1443 to 1836 389 to 1       389/755
(51 %)
9 diff
(98.9 %id)
AW518751 adenocarcinoma, Pancreas .c 1443 to 1903 464 to 1       464/469
(98 %)
14 diff
(97.1 %id)
BG189822   .c 1447 to 1887 12 to 451   AAA   440/451
(97 %)
6 diff
(98.7 %id)
AI339791 adenocarcinoma, colon .c 1447 to 1888 442 to 1       442/442
(100 %)
2 diff
(99.6 %id)
AI280895 adenocarcinoma, colon .c 1454 to 1888 433 to 1       433/433
(100 %)
3 diff
(99.4 %id)
AI280973 adenocarcinoma, colon .c 1461 to 1888 428 to 1       428/428
(100 %)
0 diff
(100 %id)
BM739034 Ascites, stomach .c 1463 to 1888 1 to 426   AAA   426/426
(100 %)
1 diff
(99.8 %id)
DB521086 testis .c 1466 to 1888 1 to 424     Submitted on the opposite strand 424/424
(100 %)
7 diff
(98.4 %id)
AW242425 Kidney .c 1471 to 1687 217 to 1       217/217
(100 %)
20 diff
(90.8 %id)
BQ011030 placenta .c 1506 to 1888 401 to 19   AAA   383/383
(100 %)
3 diff
(99.3 %id)
BJ996488 hepatoblastoma .c 1508 to 1852 345 to 1       345/345
(100 %)
0 diff
(100 %id)
BQ012901 placenta .c 1511 to 1888 396 to 19   AAA   378/378
(100 %)
0 diff
(100 %id)
AA558472 germ cell tumor .c 1527 to 1903 379 to 3   tiling clone,   377/379
(99 %)
0 diff
(100 %id)
N85138   .c 1529 to 1776 1 to 245       245/245
(100 %)
8 diff
(96.8 %id)
AI355115 colon, moderately-differentiated adenocarcinoma .c 1554 to 1902 349 to 1       349/349
(100 %)
0 diff
(100 %id)
AW628342 2 pooled high-grade transitional celltumors, genitourinary tract .c 1554 to 1888 335 to 1       335/335
(100 %)
0 diff
(100 %id)
BQ012686 placenta .c 1568 to 1888 339 to 19   AAA   321/321
(100 %)
0 diff
(100 %id)
F13615   .c 1605 to 1902 295 to 1       295/295
(100 %)
5 diff
(98.4 %id)
AB097931   .d 1 to 502 1 to 502       502/502
(100 %)
0 diff
(100 %id)
AB472042   .d 1 to 2018 1 to 2018 exact tiling clone,   2018/2018
(100 %)
0 diff
(100 %id)
BM923992 pooled colon, kidney, stomach .d 100 to 1078 1 to 985       985/986
(99 %)
16 diff
(98.4 %id)
NM_138711.3   .d 100 to 2018 1 to 1919 exact RefSeq,   1919/1919
(100 %)
0 diff
(100 %id)
AA298089 ovary .d 101 to 375 9 to 284       276/413
(66 %)
9 diff
(97.9 %id)
AU137089 placenta .d 205 to 908 2 to 711   capped   710/747
(95 %)
14 diff
(98.2 %id)
DR004450 placenta .d 225 to 580 1 to 356       356/357
(99 %)
5 diff
(98.6 %id)
CD101663 Pooled-Skin .d 230 to 906 1 to 679       679/718
(94 %)
4 diff
(99.5 %id)
BF680004 Prostate .d 232 to 977 1 to 738       738/751
(98 %)
35 diff
(95.4 %id)
BG432259 Kidney .d 232 to 697 1 to 471       471/760
(61 %)
7 diff
(99.1 %id)
DB011296 colon, tumor tissue .d 235 to 820 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA427441 colon .d 236 to 777 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
TI_57149214   .d 247 to 913 32 to 698       667/698
(95 %)
6 diff
(99.2 %id)
DR004327 placenta .d 247 to 980 1 to 734       734/734
(100 %)
5 diff
(99.4 %id)
BI761688 pooled colon, kidney, stomach .d 248 to 913 1 to 666       666/666
(100 %)
0 diff
(100 %id)
AA314023 colon .d 249 to 703 1 to 455       455/455
(100 %)
1 diff
(99.8 %id)
AW954835   .d 250 to 825 1 to 578       578/614
(94 %)
7 diff
(98.9 %id)
CR609454 Placenta Cot 25-normalized .d 251 to 1990 1 to 1740 exact     1740/1740
(100 %)
0 diff
(100 %id)
AL545177 placenta, Placenta Cot 25-normalized .d 251 to 1139 1 to 881   fully sequenced,   881/881
(100 %)
1 diff
(99.9 %id)
BQ883138 dorsal root ganglia .d 251 to 1180 16 to 944       929/944
(98 %)
13 diff
(98.7 %id)
BE865554 bladder, carcinoma, cell line .d 252 to 556 1 to 306       304/308
(98 %)
3 diff
(99.1 %id)
BC006811 Placenta, choriocarcinoma .d 253 to 2003 1 to 1751 exact available from MGC, AAA   1751/1751
(100 %)
0 diff
(100 %id)
AL549037 placenta, Placenta Cot 25-normalized .d 255 to 1162 1 to 906       906/906
(100 %)
2 diff
(99.8 %id)
BX402494 Placenta Cot 25-normalized .d 255 to 1266 1 to 1001       1001/1071
(93 %)
17 diff
(98.5 %id)
AA053612 colon, tumor .d 255 to 653 1 to 400       400/400
(100 %)
1 diff
(99.8 %id)
BE867033 adenocarcinoma, colon .d 272 to 895 1 to 620       620/620
(100 %)
4 diff
(99.4 %id)
DA430113 colon .d 296 to 859 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
AL571005 placenta, Placenta Cot 25-normalized .d 1109 to 1990 884 to 1   fully sequenced,   884/884
(100 %)
3 diff
(99.7 %id)
DB376116 placenta .d 1507 to 2010 504 to 1       504/504
(100 %)
17 diff
(96.7 %id)
AA053166 colon, tumor .d 1586 to 2005 422 to 1       422/422
(100 %)
2 diff
(99.6 %id)
AJ563369 colon carcinoma .e 1 to 1544 1 to 1544 exact tiling clone,   1544/1544
(100 %)
0 diff
(100 %id)
AJ563370 colon carcinoma .f 1 to 1600 1 to 1600 exact tiling clone,   1600/1600
(100 %)
0 diff
(100 %id)
BF514811   .f 652 to 922 286 to 16   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 271/271
(100 %)
0 diff
(100 %id)
AI476551 colon, moderately-differentiated adenocarcinoma .f 853 to 1171 361 to 43   AAA   319/333
(95 %)
0 diff
(100 %id)
TI_44158951   .g 1 to 642 56 to 697   tiling clone, fully sequenced,   642/697
(92 %)
7 diff
(99.0 %id)
BI523909 pooled lung and spleen .g 8 to 642 1 to 635   fully sequenced,   635/635
(100 %)
1 diff
(99.9 %id)
AJ698135 colon carcinoma .g 143 to 1264 1 to 1122 exact tiling clone,   1122/1122
(100 %)
0 diff
(100 %id)
BI524663 pooled lung and spleen .g 612 to 1352 752 to 1   fully sequenced,   752/752
(100 %)
23 diff
(97.0 %id)
TI_44158952   .g 612 to 1352 752 to 1   fully sequenced,   752/752
(100 %)
23 diff
(97.0 %id)
CA426975 Bone, Subchondral Bone .g 676 to 1389 732 to 19   tiling clone, AAA   714/715
(99 %)
3 diff
(99.6 %id)
DA374757 thalamus .h 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
BE540092 cervix .h 300 to 1077 16 to 809 N14T F15W G16D I17Q S18L ... tiling clone,   757/837
(90 %)
55 diff
(93.5 %id)
BM924484 pooled colon, kidney, stomach .i 1 to 679 1 to 695 K66N L69P K70E L71T Q72S ... tiling clone,   695/1243
(55 %)
37 diff
(97.1 %id)
CB133173 Liver .j 1 to 401 1 to 401   tiling clone,   401/401
(100 %)
0 diff
(100 %id)
DQ356894   .j 118 to 1452 1 to 1335 exact tiling clone,   1335/1335
(100 %)
1 diff
(100.0 %id)
AB107271 adipose .k 1 to 428 1 to 428 exact tiling clone,   428/428
(100 %)
0 diff
(100 %id)
BG571726 placenta .l-u 1 to 318 1 to 319 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 319/321
(99 %)
2 diff
(99.4 %id)
CN289139 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene PPARG, variant not shown         This clone was ignored    
CR622226 Neuroblastoma Cot 25-normalized Gene PPARG, variant not shown         This clone was ignored    
BX363318   Gene PPARG, variant not shown         This clone was ignored    
CB132672 Liver Gene PPARG, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI