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Gene POU5F1BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
65 supporting clones for gene POU5F1B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG656183 Pancreas, Purified pancreatic islet .a 1 to 550 1 to 550   tiling clone,   550/550
(100 %)
25 diff
(95.5 %id)
BX108223 colon .a 510 to 1234 1 to 727   tiling clone,   727/729
(99 %)
10 diff
(98.7 %id)
AA534908 colon .a 815 to 1341 524 to 4       521/524
(99 %)
0 diff
(100 %id)
DQ486513   .a 820 to 2402 1 to 1583 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 1583/1583
(100 %)
0 diff
(100 %id)
NM_001159542.1   .a 820 to 2402 1 to 1583 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 1583/1583
(100 %)
0 diff
(100 %id)
AA515307 colon .a 865 to 1320 477 to 24       454/477
(95 %)
0 diff
(100 %id)
AA515288 colon .a 866 to 1340 472 to 5       468/472
(99 %)
0 diff
(100 %id)
AA480280 colon .a 948 to 1340 394 to 5       390/394
(98 %)
0 diff
(100 %id)
AA480263.
matches multiple genes
colon .a 1033 to 1333 306 to 8     also hits gene POU5F1 299/306
(97 %)
0 diff
(100 %id)
GU480835   .a 1074 to 2156 1 to 1083 L169P     1083/1083
(100 %)
1 diff
(100.0 %id)
GU480840   .a 1074 to 2156 1 to 1083 W23G A25P     1083/1083
(100 %)
4 diff
(99.7 %id)
GU480841   .a 1074 to 2156 1 to 1083 D31G G176E E238Q     1083/1083
(100 %)
5 diff
(99.6 %id)
GU480842   .a 1074 to 2156 1 to 1083 exact     1083/1083
(100 %)
1 diff
(100.0 %id)
GU480844   .a 1074 to 2156 1 to 1085 G176E I220T M227L I259Q S260I ...     1085/1085
(100 %)
18 diff
(98.4 %id)
GU480845   .a 1074 to 2156 1 to 1083 D31V E340V     1083/1083
(100 %)
2 diff
(99.9 %id)
GU480849   .a 1074 to 2156 1 to 1085 E56G E91G T92D S93L Q94S ...     1085/1085
(100 %)
5 diff
(99.6 %id)
GU480850   .a 1074 to 2156 1 to 1085 E91G T92D S93L Q94S P95A ...     1085/1085
(100 %)
5 diff
(99.6 %id)
GU480851   .a 1074 to 2156 1 to 1084 E91G T92D S93L Q94S P95A ...     1084/1084
(100 %)
9 diff
(99.2 %id)
GU480864   .a 1074 to 2156 1 to 1083 L129Q T163A L250P     1083/1083
(100 %)
3 diff
(99.8 %id)
GU480868   .a 1074 to 2156 1 to 1083 Q39R L169R E295V     1083/1083
(100 %)
3 diff
(99.8 %id)
GU480878 glioma .a 1074 to 2156 1 to 1083 K182T N214D     1083/1083
(100 %)
2 diff
(99.9 %id)
GU480880 glioma .a 1074 to 2156 1 to 1083 A211T     1083/1083
(100 %)
2 diff
(99.9 %id)
GU480883 glioma .a 1074 to 2156 1 to 1083 K182T N214D     1083/1083
(100 %)
2 diff
(99.9 %id)
GU480884 glioma .a 1074 to 2156 1 to 1082 T116A N132T P133R E134R K135S ...     1082/1082
(100 %)
3 diff
(99.8 %id)
GU480885 glioma .a 1074 to 2156 1 to 1084 Q79L Q87P G88R G89R E91G ...     1084/1084
(100 %)
2 diff
(99.9 %id)
GU480886 glioma .a 1074 to 2156 1 to 1083 W23G A25P L33R     1083/1083
(100 %)
8 diff
(99.3 %id)
GU480889 glioma .a 1074 to 2156 1 to 1083 A10T D138G K182T N214D     1083/1083
(100 %)
4 diff
(99.7 %id)
GU480896 breast carcinoma .a 1074 to 2156 1 to 1083 G176E     1083/1083
(100 %)
1 diff
(100.0 %id)
GU480899 breast carcinoma .a 1074 to 2156 1 to 1084 F9A A10C F11L S12L P13A ...     1084/1084
(100 %)
9 diff
(99.2 %id)
GU480902 breast carcinoma .a 1074 to 2156 1 to 1083 exact     1083/1083
(100 %)
1 diff
(100.0 %id)
GU480905 breast carcinoma .a 1074 to 2156 1 to 1083 P13L Q264H     1083/1083
(100 %)
3 diff
(99.8 %id)
GU480906 breast carcinoma .a 1074 to 2156 1 to 1083 E91V     1083/1083
(100 %)
2 diff
(99.9 %id)
GU480908 breast carcinoma .a 1074 to 2156 1 to 1083 N106S     1083/1083
(100 %)
1 diff
(100.0 %id)
GU480910 breast carcinoma .a 1074 to 2156 1 to 1085 G19E D20*     1085/1085
(100 %)
5 diff
(99.6 %id)
GU480911 breast carcinoma .a 1074 to 2156 1 to 1083 exact     1083/1083
(100 %)
3 diff
(99.8 %id)
GU480912 breast carcinoma .a 1074 to 2156 1 to 1083 G176E R201W E238Q     1083/1083
(100 %)
4 diff
(99.7 %id)
GU480913 breast carcinoma .a 1074 to 2156 1 to 1083 A150T     1083/1083
(100 %)
3 diff
(99.8 %id)
AF268615 Kidney .a 1075 to 2154 1 to 1080 exact     1080/1080
(100 %)
0 diff
(100 %id)
AF268618   .a 1075 to 2154 1 to 1080 K182T N214D     1080/1080
(100 %)
2 diff
(99.9 %id)
TI_1320131341   .a 1157 to 2206 1118 to 61       1058/1208
(87 %)
0 diff
(100 %id)
FM177969   .a 1196 to 1576 381 to 1     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
FM177970   .a 1196 to 1576 1 to 381       381/381
(100 %)
3 diff
(99.3 %id)
FM177971   .a 1196 to 1576 381 to 1     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
FM177972   .a 1196 to 1576 1 to 381       381/381
(100 %)
1 diff
(99.8 %id)
FM177973   .a 1196 to 1576 381 to 1     Submitted on the opposite strand 381/381
(100 %)
1 diff
(99.8 %id)
FM177974   .a 1196 to 1576 381 to 1     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
FM177975   .a 1196 to 1576 1 to 381       381/381
(100 %)
0 diff
(100 %id)
FM177976   .a 1196 to 1576 1 to 381       381/381
(100 %)
0 diff
(100 %id)
FM177977   .a 1196 to 1576 1 to 381       381/381
(100 %)
0 diff
(100 %id)
FM177978   .a 1196 to 1576 1 to 381       381/381
(100 %)
0 diff
(100 %id)
FM177979   .a 1196 to 1576 381 to 1     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
FM177980   .a 1196 to 1576 381 to 1     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
FM177981   .a 1196 to 1576 1 to 381       381/381
(100 %)
0 diff
(100 %id)
FM177982   .a 1196 to 1576 1 to 381       381/381
(100 %)
1 diff
(99.8 %id)
CB144537 Liver .a 1311 to 1708 1 to 398       398/398
(100 %)
3 diff
(99.3 %id)
AA196616.
matches multiple genes
  .a 1466 to 1898 1 to 440     also hits gene POU5F1, POU5F1P3 440/440
(100 %)
11 diff
(97.5 %id)
BM817496 Ascites, stomach .a 1723 to 2224 1 to 502       502/502
(100 %)
2 diff
(99.7 %id)
AW798002.
matches multiple genes
uterus .a 1796 to 1957 8 to 171     also hits gene POU5F1P3 164/171
(95 %)
6 diff
(96.5 %id)
BG656494 Pancreas, Purified pancreatic islet .a 1885 to 2149 265 to 1     Submitted on the opposite strand 265/265
(100 %)
6 diff
(97.8 %id)
AA584906 gastric tumor, stomach .a 1910 to 2400 1 to 489     Submitted on the opposite strand 489/489
(100 %)
3 diff
(99.4 %id)
BM796771 Ascites, stomach .a 1923 to 2402 1 to 480   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 480/480
(100 %)
4 diff
(99.2 %id)
DN604371.
matches multiple genes
  .a 2298 to 2363 66 to 1   tiling clone, also hits gene TCF19 66/74
(89 %)
5 diff
(93.3 %id)
AW857584 colon Gene POU5F1B, variant not shown              
AW847269 colon Gene POU5F1B, variant not shown              
DB232815 trachea Gene POU5F1B, variant not shown       capped      
DB350108 trachea Gene POU5F1B, variant not shown              
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DC