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Gene PODXL2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
212 supporting clones for gene PODXL2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX418579 brain, fetal brain .a 1 to 1088 1 to 1080   tiling clone,   1080/1123
(96 %)
16 diff
(98.6 %id)
BX465167 neuroblastoma .a 4 to 1147 1 to 1137       1137/1137
(100 %)
20 diff
(98.3 %id)
AL538442 brain, fetal brain .a 9 to 870 1 to 860       860/860
(100 %)
2 diff
(99.8 %id)
AL519913 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 13 to 1119 1 to 1099   fully sequenced,   1099/1099
(100 %)
25 diff
(97.8 %id)
AL534420 brain, fetal brain .a 13 to 1042 1 to 1016       1016/1073
(94 %)
21 diff
(98.1 %id)
AL537346 brain, fetal brain .a 13 to 895 1 to 882       882/882
(100 %)
5 diff
(99.5 %id)
BX406945 adult brain, brain .a 13 to 1045 1 to 1006       1006/1022
(98 %)
67 diff
(93.5 %id)
CR604786 fetal brain .a 19 to 2166 1 to 2148 exact     2148/2148
(100 %)
0 diff
(100 %id)
AL515905 brain, neuroblastoma, neuroblastoma cells .a 32 to 931 1 to 889       889/951
(93 %)
17 diff
(98.3 %id)
AY359096   .a 34 to 2196 1 to 2163 P77S     2163/2167
(99 %)
3 diff
(99.9 %id)
NM_015720.2   .a 34 to 2204 1 to 2171 exact RefSeq,   2171/2171
(100 %)
0 diff
(100 %id)
AL525377 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 38 to 1034 1 to 991       991/1043
(95 %)
28 diff
(97.4 %id)
DB471255 hippocampus .a 39 to 406 1 to 369       369/396
(93 %)
24 diff
(94.0 %id)
BM041953 melanotic melanoma, cell line, skin .a 41 to 406 1 to 371       371/601
(61 %)
10 diff
(98.4 %id)
BC052585 Skin, melanoma, melanotic .a 42 to 2204 1 to 2163 exact tiling clone, available from MGC, AAA   2163/2163
(100 %)
1 diff
(100.0 %id)
BQ679388 melanotic melanoma, cell line, skin .a 44 to 407 1 to 363       363/1099
(33 %)
10 diff
(99.1 %id)
AF219137 brain .a 55 to 2197 18 to 2155 exact AAA   2138/2155
(99 %)
12 diff
(99.5 %id)
CR596999 fetal brain .a 64 to 2180 1 to 2117   tiling clone,   2117/2117
(100 %)
0 diff
(100 %id)
AL533702 brain, fetal brain .a 64 to 1115 1 to 1044   fully sequenced,   1044/1044
(100 %)
22 diff
(97.9 %id)
BM452541 eye, retinoblastoma .a 127 to 886 17 to 777       761/1055
(72 %)
15 diff
(98.6 %id)
BE382652 brain, neuroblastoma .a 150 to 814 1 to 661       661/661
(100 %)
5 diff
(99.3 %id)
BE252205 eye, retinoblastoma .a 170 to 774 1 to 608       608/608
(100 %)
6 diff
(99.1 %id)
BE251553 eye, retinoblastoma .a 170 to 899 1 to 724       724/724
(100 %)
11 diff
(98.5 %id)
EB388907 eye, optic nerve .a 205 to 998 1 to 793       793/793
(100 %)
2 diff
(99.8 %id)
BQ355123 head_neck .a 271 to 454 34 to 216       183/216
(84 %)
6 diff
(97.3 %id)
BM853375 myeloma .a 308 to 780 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
BG765888 melanotic melanoma, high MDR (cell line), skin .a 327 to 1171 1 to 833       833/833
(100 %)
24 diff
(97.2 %id)
BG913617 anaplastic oligodendroglioma with 1p/19qloss, brain .a 354 to 1250 1 to 899       899/899
(100 %)
25 diff
(97.3 %id)
BF805256 colon_ins .a 355 to 698 1 to 344       344/344
(100 %)
6 diff
(98.3 %id)
BM824565 Ascites, stomach .a 360 to 840 1 to 481       481/481
(100 %)
4 diff
(99.2 %id)
BI160688 epithelioid carcinoma cell line, Pancreas .a 362 to 682 1 to 327       327/1017
(32 %)
13 diff
(98.8 %id)
BG473144 eye, retinoblastoma .a 364 to 1172 1 to 811       811/811
(100 %)
10 diff
(98.8 %id)
BG473836 eye, retinoblastoma .a 364 to 792 1 to 439       439/1075
(40 %)
11 diff
(99.0 %id)
BG474596 eye, retinoblastoma .a 364 to 1172 1 to 810       810/813
(99 %)
22 diff
(97.3 %id)
BQ963018 epithelioid carcinoma cell line, Pancreas .a 364 to 1190 1 to 833       833/911
(91 %)
15 diff
(98.4 %id)
BM802420 duodenal adenocarcinoma, cell line, small intestine .a 365 to 1009 1 to 645       645/1054
(61 %)
14 diff
(98.7 %id)
F12128 brain, total brain .a 368 to 596 1 to 229       229/229
(100 %)
0 diff
(100 %id)
BF981162 duodenal adenocarcinoma, cell line, small intestine .a 369 to 1125 1 to 753       753/854
(88 %)
15 diff
(98.3 %id)
BQ920644 carcinoma, cell line, Prostate .a 372 to 1118 39 to 787       749/978
(76 %)
37 diff
(96.3 %id)
T66208 whole brain .a 405 to 827 11 to 433       423/438
(96 %)
8 diff
(98.2 %id)
BQ343748 nervous_tumor .a 416 to 660 252 to 8       245/252
(97 %)
0 diff
(100 %id)
BF857155 prostate_tumor .a 459 to 563 105 to 3     Submitted on the opposite strand 103/105
(98 %)
4 diff
(96.2 %id)
BE255806 eye, retinoblastoma .a 472 to 996 1 to 525       525/525
(100 %)
0 diff
(100 %id)
BE254484 eye, retinoblastoma .a 472 to 1189 1 to 710       710/714
(99 %)
16 diff
(97.8 %id)
CF140771 CNCAP(3)T-225 cell line, Prostate .a 568 to 905 1 to 338       338/338
(100 %)
4 diff
(98.9 %id)
TI_154171375   .a 575 to 1196 80 to 702       623/927
(67 %)
30 diff
(96.8 %id)
BU848898 ovary, teratocarcinoma, cell line .a 674 to 1547 1 to 880       878/925
(94 %)
21 diff
(97.8 %id)
BQ942231 sciatic nerve .a 699 to 1421 24 to 752       729/943
(77 %)
26 diff
(97.3 %id)
CR618162 Neuroblastoma Cot 25-normalized .a 712 to 2168 1 to 1457       1457/1457
(100 %)
0 diff
(100 %id)
BX431255 brain, fetal brain .a 727 to 1657 1 to 932       932/936
(99 %)
11 diff
(98.9 %id)
BM726054 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 733 to 1379 1 to 647       647/647
(100 %)
1 diff
(99.9 %id)
BM725944 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 733 to 1278 1 to 546       546/546
(100 %)
0 diff
(100 %id)
AL523285 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 747 to 1730 37 to 1008   fully sequenced,   970/1006
(96 %)
16 diff
(98.5 %id)
CF145851 CNCAP(3)T-225 cell line, Prostate .a 760 to 1468 1 to 708       708/708
(100 %)
5 diff
(99.3 %id)
TI_154178141   .a 767 to 1482 70 to 784       715/955
(74 %)
2 diff
(99.8 %id)
BF529941 anaplastic oligodendroglioma with 1p/19qloss, brain .a 768 to 1488 1 to 719       719/792
(90 %)
7 diff
(99.2 %id)
AA324163 brain .a 836 to 1085 1 to 250       250/250
(100 %)
0 diff
(100 %id)
H07952 whole brain .a 846 to 1137 1 to 292       292/292
(100 %)
4 diff
(98.7 %id)
BG913008 anaplastic oligodendroglioma with 1p/19qloss, brain .a 849 to 1647 27 to 843       817/843
(96 %)
34 diff
(96.0 %id)
BF345156 anaplastic oligodendroglioma with 1p/19qloss, brain .a 853 to 1580 41 to 763       723/985
(73 %)
23 diff
(97.7 %id)
BF345091 anaplastic oligodendroglioma with 1p/19qloss, brain .a 853 to 1641 40 to 822       783/871
(89 %)
37 diff
(95.8 %id)
TI_1948226955   .a 872 to 1874 1147 to 130       1018/1277
(79 %)
51 diff
(96.1 %id)
TI_1948226708   .a 878 to 1874 1123 to 136       988/1244
(79 %)
59 diff
(95.3 %id)
BE769903 prostate_tumor .a 903 to 1337 1 to 436       436/436
(100 %)
6 diff
(98.7 %id)
BG914330 anaplastic oligodendroglioma with 1p/19qloss, brain .a 949 to 1709 17 to 774       758/777
(97 %)
11 diff
(98.6 %id)
CR621544 fetal brain .a 959 to 2187 1 to 1229       1229/1229
(100 %)
0 diff
(100 %id)
AL534816 brain, fetal brain .a 959 to 1294 1 to 336   fully sequenced,   336/336
(100 %)
0 diff
(100 %id)
BM712617 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1010 to 1549 1 to 540       540/540
(100 %)
0 diff
(100 %id)
CA975880 sciatic nerve .a 1023 to 1844 24 to 853       830/890
(93 %)
16 diff
(98.3 %id)
TI_153981463   .a 1024 to 1539 73 to 589       517/1321
(39 %)
3 diff
(99.8 %id)
BM789119 Ascites, stomach .a 1036 to 1668 1 to 633       633/633
(100 %)
0 diff
(100 %id)
TI_1948226954   .a 1054 to 1874 951 to 125       827/1158
(71 %)
25 diff
(97.9 %id)
AL533701 brain, fetal brain .a 1090 to 2180 1084 to 1   fully sequenced,   1084/1084
(100 %)
21 diff
(98.1 %id)
AI867802 pooled germ cell tumors .a 1097 to 1379 283 to 1       283/283
(100 %)
1 diff
(99.7 %id)
AL561833 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 1108 to 2181 1067 to 1   fully sequenced,   1067/1067
(100 %)
71 diff
(93.4 %id)
BX283212 brain, neuroblastoma .a 1113 to 1619 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
BI199246 brain, neuroblastoma .a 1113 to 1918 1 to 804       804/804
(100 %)
7 diff
(99.2 %id)
BG818818 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1114 to 2012 1 to 891       891/898
(99 %)
27 diff
(97.0 %id)
TI_57172407   .a 1117 to 1712 26 to 622       597/622
(95 %)
6 diff
(99.1 %id)
BI828686 brain, medulla .a 1120 to 1712 1 to 594       594/594
(100 %)
2 diff
(99.7 %id)
BM719851 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1121 to 1568 1 to 448   fully sequenced,   448/448
(100 %)
1 diff
(99.8 %id)
BQ935623 carcinoma, cell line, Prostate .a 1122 to 1662 1 to 544       544/1346
(40 %)
23 diff
(98.3 %id)
BQ939183 carcinoma, cell line, Prostate .a 1122 to 1830 1 to 717       717/951
(75 %)
29 diff
(97.0 %id)
AL525336 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1186 to 2136 945 to 1       945/1000
(94 %)
20 diff
(98.0 %id)
EC540279 Prostate .a 1186 to 1264 82 to 4       79/89
(88 %)
0 diff
(100 %id)
TI_1948226459   .a 1186 to 1874 817 to 128       690/1297
(53 %)
7 diff
(99.5 %id)
BM798183 Ascites, stomach .a 1201 to 1385 1 to 185       185/185
(100 %)
1 diff
(99.5 %id)
BE740130 adenocarcinoma cell line, ovary .a 1204 to 1928 1 to 723       723/730
(99 %)
10 diff
(98.7 %id)
BF761480 colon_est .a 1229 to 1540 18 to 328       311/341
(91 %)
7 diff
(98.0 %id)
BF528852 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1232 to 1942 9 to 718       710/838
(84 %)
13 diff
(98.5 %id)
BM820466 stomach .a 1232 to 1683 1 to 452       452/452
(100 %)
2 diff
(99.6 %id)
AL534815 brain, fetal brain .a 1233 to 2187 955 to 1   fully sequenced,   952/952
(100 %)
22 diff
(97.7 %id)
BM822643 stomach .a 1233 to 1822 1 to 590       590/590
(100 %)
0 diff
(100 %id)
BM821782 stomach .a 1234 to 1851 1 to 618       618/618
(100 %)
1 diff
(99.9 %id)
BM689139 eye, optic nerve .a 1236 to 1652 1 to 417       417/417
(100 %)
6 diff
(98.6 %id)
BM713249 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1249 to 1791 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
AL534419 brain, fetal brain .a 1264 to 2160 924 to 30       895/924
(96 %)
24 diff
(97.5 %id)
AL566773 brain, fetal brain .a 1264 to 2179 914 to 1       914/914
(100 %)
1 diff
(99.9 %id)
BM727601 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1264 to 1714 1 to 451       451/451
(100 %)
0 diff
(100 %id)
TI_1948226707   .a 1266 to 1874 735 to 123       613/1209
(50 %)
11 diff
(99.1 %id)
BX406944 adult brain, brain .a 1270 to 2156 890 to 18       873/893
(97 %)
17 diff
(98.1 %id)
AI204971 schizophrenic brain S-11 frontal lobe .a 1273 to 1554 285 to 4       282/285
(98 %)
0 diff
(100 %id)
AL538441 brain, fetal brain .a 1274 to 2175 897 to 1       610/897
(68 %)
24 diff
(97.4 %id)
AL568203 brain, fetal brain .a 1277 to 2130 885 to 34       852/859
(99 %)
7 diff
(99.2 %id)
BM792483 Ascites, stomach .a 1287 to 1929 1 to 643       643/652
(98 %)
2 diff
(99.7 %id)
EC516790 Prostate .a 1314 to 1398 84 to 1       84/84
(100 %)
1 diff
(98.9 %id)
BE867462 adenocarcinoma, colon .a 1318 to 1942 1 to 622       622/645
(96 %)
4 diff
(99.4 %id)
BG283673 adenocarcinoma, cell line, Prostate .a 1318 to 1980 1 to 660       660/660
(100 %)
5 diff
(99.3 %id)
BF920673 nervous_tumor .a 1414 to 1725 323 to 15     Submitted on the opposite strand 309/482
(64 %)
5 diff
(99.0 %id)
AL515904 brain, neuroblastoma, neuroblastoma cells .a 1420 to 2153 733 to 1       733/736
(99 %)
8 diff
(99.0 %id)
BX434609 brain, fetal brain .a 1424 to 2194 779 to 1       777/903
(86 %)
22 diff
(97.6 %id)
BM676371 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1432 to 2197 783 to 19   AAA   765/765
(100 %)
2 diff
(99.8 %id)
BF804212 colon_ins .a 1445 to 1839 396 to 2     Submitted on the opposite strand 395/396
(99 %)
1 diff
(99.8 %id)
BM682490 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1446 to 2197 766 to 19   AAA   748/752
(99 %)
5 diff
(99.4 %id)
BF529970 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1469 to 1955 1 to 489       489/721
(67 %)
5 diff
(99.4 %id)
TI_149298759   .a 1481 to 2197 810 to 95   AAA   716/935
(76 %)
11 diff
(98.9 %id)
BU155424 melanotic melanoma, cell line, skin .a 1526 to 2053 68 to 602       535/1182
(45 %)
35 diff
(97.1 %id)
BQ680427 melanotic melanoma, cell line, skin .a 1528 to 1888 1 to 361       361/1200
(30 %)
8 diff
(99.4 %id)
BF530228 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1532 to 2124 1 to 591       591/591
(100 %)
3 diff
(99.5 %id)
BM676717 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1538 to 2198 679 to 19   fully sequenced, AAA   661/661
(100 %)
0 diff
(100 %id)
BG913089 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1570 to 2196 1 to 623       623/685
(90 %)
13 diff
(98.2 %id)
BG283105 adenocarcinoma, cell line, Prostate .a 1584 to 2139 1 to 559       559/559
(100 %)
6 diff
(99.0 %id)
BM975456 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1592 to 2197 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
BU738340 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1631 to 2203 591 to 19   AAA   573/573
(100 %)
0 diff
(100 %id)
BM674351 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1631 to 2197 585 to 19   AAA   567/567
(100 %)
1 diff
(99.9 %id)
AL523284 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1700 to 2147 462 to 18   fully sequenced,   445/462
(96 %)
13 diff
(97.2 %id)
BU727362 eye, optic nerve .a 2045 to 2197 171 to 19   AAA   153/156
(98 %)
0 diff
(100 %id)
BG037167 testis .b 1 to 726 1 to 716       716/884
(80 %)
27 diff
(97.0 %id)
DB474868 hippocampus .b 8 to 486 1 to 479   tiling clone,   479/479
(100 %)
3 diff
(99.4 %id)
AL524055 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 9 to 956 1 to 945       945/945
(100 %)
14 diff
(98.6 %id)
AL538039 brain, fetal brain .b 14 to 797 1 to 784       784/844
(92 %)
20 diff
(97.7 %id)
DR001148 fetal brain .b 19 to 655 1 to 637       637/640
(99 %)
5 diff
(99.3 %id)
DB476974 hippocampus .b 20 to 522 1 to 503       503/503
(100 %)
3 diff
(99.5 %id)
DB458002 testis .b 22 to 525 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
BG716072 brain, hypothalamus .b 22 to 850 1 to 835       835/835
(100 %)
18 diff
(97.9 %id)
BX461005 brain, fetal brain .b 25 to 913 1 to 888       888/888
(100 %)
10 diff
(98.9 %id)
DB474410 hippocampus .b 28 to 512 1 to 485       485/485
(100 %)
6 diff
(98.8 %id)
DB474446 hippocampus .b 28 to 515 1 to 488       488/488
(100 %)
3 diff
(99.4 %id)
AL540067 brain, fetal brain .b 31 to 853 1 to 823       823/823
(100 %)
5 diff
(99.4 %id)
BQ434410 eye, retinoblastoma .b 31 to 856 1 to 836       836/869
(96 %)
28 diff
(96.8 %id)
BQ676613 melanotic melanoma, cell line, skin .b 31 to 782 1 to 759       759/946
(80 %)
25 diff
(97.4 %id)
TI_57148328   .b 31 to 849 23 to 845       823/845
(97 %)
10 diff
(98.9 %id)
BE257148 eye, retinoblastoma .b 33 to 687 1 to 655       655/673
(97 %)
14 diff
(98.0 %id)
BI196599 brain, neuroblastoma .b 33 to 590 1 to 556       556/556
(100 %)
4 diff
(99.3 %id)
BI195988 brain, neuroblastoma .b 33 to 578 1 to 547       547/547
(100 %)
4 diff
(99.3 %id)
BI199270 brain, neuroblastoma .b 33 to 584 1 to 557       557/741
(75 %)
22 diff
(97.1 %id)
BC019330 Brain, neuroblastoma .b 34 to 1981 1 to 1948 L336Q tiling clone, available from MGC, AAA   1948/1948
(100 %)
1 diff
(100.0 %id)
BG032375 breast, mammary adenocarcinoma, cell line .b 34 to 821 1 to 779       779/998
(78 %)
19 diff
(98.1 %id)
DB493923 hypothalamus .b 35 to 570 1 to 536       536/536
(100 %)
1 diff
(99.9 %id)
AL518004 brain, neuroblastoma, neuroblastoma cells .b 36 to 1044 1 to 1006       1006/1010
(99 %)
14 diff
(98.7 %id)
BX418761 brain, fetal brain .b 36 to 1026 1 to 982       982/1065
(92 %)
12 diff
(98.9 %id)
BI757958 brain .b 36 to 735 1 to 703       703/706
(99 %)
11 diff
(98.5 %id)
BM926313 brain .b 36 to 550 14 to 530       517/1481
(34 %)
16 diff
(99.0 %id)
TI_57221484   .b 36 to 735 68 to 770       703/773
(90 %)
17 diff
(97.9 %id)
BI760465 pooled colon, kidney, stomach .b 37 to 849 1 to 817       817/817
(100 %)
5 diff
(99.4 %id)
BI601616 brain, hypothalamus .b 37 to 872 8 to 850       843/1073
(78 %)
40 diff
(96.3 %id)
TI_45216284   .b 37 to 872 137 to 979       843/1202
(70 %)
40 diff
(96.7 %id)
BG703131 brain, hippocampus .b 43 to 663 6 to 626       621/626
(99 %)
6 diff
(99.1 %id)
BI916196 brain .b 44 to 849 1 to 807       807/807
(100 %)
1 diff
(99.9 %id)
TI_57239718   .b 44 to 849 67 to 873       807/873
(92 %)
7 diff
(99.2 %id)
BG706099 brain, hypothalamus .b 50 to 768 1 to 719       719/719
(100 %)
7 diff
(99.1 %id)
BG707793 brain, hypothalamus .b 50 to 830 1 to 779       779/780
(99 %)
13 diff
(98.4 %id)
BG708186 brain, hypothalamus .b 50 to 774 1 to 723       723/723
(100 %)
8 diff
(98.9 %id)
BM544614 brain, hippocampus .b 50 to 969 1 to 928       928/1042
(89 %)
40 diff
(96.2 %id)
BE313658 brain, neuroblastoma .b 52 to 686 1 to 633       633/634
(99 %)
9 diff
(98.6 %id)
BE312111 brain, neuroblastoma .b 53 to 567 1 to 546       522/663
(78 %)
39 diff
(94.2 %id)
BM041870 melanotic melanoma, cell line, skin .b 53 to 738 1 to 700       629/711
(88 %)
22 diff
(97.0 %id)
BM041887 melanotic melanoma, cell line, skin .b 53 to 574 1 to 530       528/536
(98 %)
15 diff
(97.3 %id)
BQ677250 melanotic melanoma, cell line, skin .b 53 to 479 1 to 427       427/951
(44 %)
17 diff
(98.3 %id)
BQ684566 melanotic melanoma, cell line, skin .b 56 to 561 1 to 505       505/1150
(43 %)
16 diff
(98.7 %id)
BQ678272 melanotic melanoma, cell line, skin .b 56 to 641 1 to 588       588/998
(58 %)
18 diff
(98.2 %id)
DB505869 hypothalamus .b 58 to 567 1 to 510       510/510
(100 %)
1 diff
(99.9 %id)
BG913253 anaplastic oligodendroglioma with 1p/19qloss, brain .b 60 to 862 1 to 805       805/831
(96 %)
20 diff
(97.6 %id)
BF338234 brain, glioblastoma with EGFR amplification .b 61 to 653 29 to 626       598/626
(95 %)
14 diff
(97.8 %id)
AL530054 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 63 to 896 1 to 835       835/835
(100 %)
2 diff
(99.8 %id)
CN305801 embryonic stem cells, cell lines H1, H7, andH9 .b 69 to 593 1 to 525       525/525
(100 %)
0 diff
(100 %id)
TI_1948095130   .b 69 to 769 126 to 835       710/1311
(54 %)
31 diff
(97.7 %id)
TI_1948226456   .b 69 to 822 153 to 912       760/1316
(57 %)
39 diff
(97.1 %id)
TI_1948226457   .b 69 to 756 117 to 807       691/1196
(57 %)
26 diff
(97.9 %id)
TI_1948226705   .b 69 to 1030 134 to 1091   AAA   958/1319
(72 %)
32 diff
(97.6 %id)
TI_1948226706   .b 69 to 812 118 to 871       754/1205
(62 %)
41 diff
(96.6 %id)
TI_1948226952   .b 69 to 1128 134 to 1205   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1072/1336
(80 %)
58 diff
(95.7 %id)
TI_1948226953   .b 69 to 818 122 to 876       755/1144
(65 %)
39 diff
(96.6 %id)
CV027617 mixed .b 70 to 699 1 to 630       630/630
(100 %)
4 diff
(99.4 %id)
EL736115 mixed .b 70 to 698 1 to 629       629/629
(100 %)
5 diff
(99.3 %id)
CX762475 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 78 to 820 1 to 742     Submitted on the opposite strand 742/743
(99 %)
10 diff
(98.7 %id)
BQ933659 large cell carcinoma, lung .b 81 to 938 1 to 867       867/876
(98 %)
18 diff
(98.0 %id)
BE257008 eye, retinoblastoma .b 962 to 1538 127 to 698       572/761
(75 %)
20 diff
(97.4 %id)
AL567115 brain, fetal brain .b 1085 to 1959 870 to 1       847/884
(95 %)
76 diff
(91.5 %id)
BF979949 testis .b 1086 to 1929 849 to 1       849/1039
(81 %)
36 diff
(96.6 %id)
AL530053 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 1088 to 1930 861 to 22       840/870
(96 %)
14 diff
(98.4 %id)
AL524054 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 1250 to 1972 722 to 1       722/923
(78 %)
26 diff
(97.2 %id)
AL518003 brain, neuroblastoma, neuroblastoma cells .b 1272 to 1930 687 to 28       660/687
(96 %)
15 diff
(97.9 %id)
DB577163 hypothalamus .b 1478 to 1980 1 to 503     Submitted on the opposite strand 503/503
(100 %)
2 diff
(99.7 %id)
AW192547 adenocarcinoma, Pancreas .b 1482 to 1981 517 to 18   AAA   500/500
(100 %)
14 diff
(97.2 %id)
DB545659 hippocampus .b 1484 to 1980 1 to 497     Submitted on the opposite strand 497/497
(100 %)
2 diff
(99.6 %id)
AI282924 esophagus, squamous cell carcinoma .b 1493 to 1981 485 to 4       482/511
(94 %)
0 diff
(100 %id)
DB543265 hippocampus .b 1501 to 1980 1 to 480     Submitted on the opposite strand 480/480
(100 %)
1 diff
(99.8 %id)
DB543231 hippocampus .b 1508 to 1981 1 to 474     Submitted on the opposite strand 474/474
(100 %)
1 diff
(99.8 %id)
AI652760 pooled germ cell tumors .b 1513 to 1981 470 to 2       469/470
(99 %)
0 diff
(100 %id)
DB564956 hypothalamus .b 1522 to 1981 1 to 460     Submitted on the opposite strand 460/460
(100 %)
0 diff
(100 %id)
BM932008 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1536 to 1981 1 to 446   AAA   446/446
(100 %)
1 diff
(99.8 %id)
DB543702 hippocampus .b 1543 to 1989 1 to 447     Submitted on the opposite strand 447/447
(100 %)
0 diff
(100 %id)
BM819671 stomach .b 1566 to 1911 346 to 1     Submitted on the opposite strand 346/346
(100 %)
6 diff
(98.3 %id)
BG910311 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1570 to 1981 1 to 412   AAA   412/412
(100 %)
1 diff
(99.8 %id)
BF509645   .b 1574 to 1981 425 to 18   AAA   408/408
(100 %)
1 diff
(99.8 %id)
TI_151734472   .b 1606 to 1981 486 to 110   AAA   377/927
(40 %)
6 diff
(99.4 %id)
BQ189652 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1614 to 1981 1 to 369       369/419
(88 %)
3 diff
(99.3 %id)
AI266471 placenta .b 1618 to 1981 367 to 4       364/369
(98 %)
0 diff
(100 %id)
AI083778 anaplastic oligodendroglioma, brain .b 1645 to 1988 344 to 1       344/344
(100 %)
6 diff
(98.3 %id)
CR607317 HeLa cells Cot 25-normalized .b 1663 to 1981 1 to 319       319/319
(100 %)
0 diff
(100 %id)
BX384352   .b 1663 to 1981 1 to 320   fully sequenced,   320/320
(100 %)
1 diff
(99.7 %id)
BM309853 insulinoma, Pancreas .b 1693 to 1981 1 to 289   AAA   289/289
(100 %)
3 diff
(99.0 %id)
BQ267314 insulinoma, Pancreas .b 1693 to 1981 1 to 289   fully sequenced, AAA   289/289
(100 %)
3 diff
(99.0 %id)
BM310135 insulinoma, Pancreas .b 1695 to 1981 301 to 15   AAA   287/289
(99 %)
3 diff
(99.0 %id)
BU738779 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1697 to 1981 303 to 19   AAA   285/285
(100 %)
1 diff
(99.7 %id)
BM675120 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1750 to 1981 250 to 19   AAA   232/232
(100 %)
0 diff
(100 %id)
BQ272553 insulinoma, Pancreas .b 1798 to 1903 106 to 1   fully sequenced,   106/106
(100 %)
0 diff
(100 %id)
BX352469   .b 1807 to 1980 174 to 1   fully sequenced,   174/174
(100 %)
1 diff
(99.5 %id)
EC491790 Prostate .b 1812 to 1943 1 to 132       132/132
(100 %)
1 diff
(99.3 %id)
AI867738 pooled germ cell tumors .b 1826 to 1977 169 to 18   AAA   152/152
(100 %)
1 diff
(99.4 %id)
BM564795 eye, retinoblastoma .c 1 to 495 1 to 495 T2G I180H I181H L182S N183E ... tiling clone,   858/1079
(79 %)
45 diff
(95.9 %id)
BG913463 anaplastic oligodendroglioma with 1p/19qloss, brain .d 1 to 622 1 to 624 E13R D14R L15S N16Q Q17P ... tiling clone,   624/775
(80 %)
3 diff
(99.7 %id)
CN293456 embryonic stem cells, DMSO-treated H9 cellline .e-u 1 to 441 1 to 441   tiling clone,   441/441
(100 %)
0 diff
(100 %id)
BF530367 anaplastic oligodendroglioma with 1p/19qloss, brain .e-u 241 to 891 19 to 665 N41D L113S N114T G115A P116R ... tiling clone,   647/670
(96 %)
11 diff
(98.4 %id)
AW008636 thymus, pooled .e-u 437 to 813 1 to 377   tiling clone, Submitted on the opposite strand 377/377
(100 %)
0 diff
(100 %id)
BG775836 carcinoma, cell line, Prostate .f 1 to 753 772 to 1 P2R M5N Q6A P7T P8Y ... tiling clone,   772/904
(85 %)
31 diff
(96.6 %id)
EC471335 Prostate Gene PODXL2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ636352 eye, retina Gene PODXL2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ636865 eye, retina Gene PODXL2, variant not shown         Suspected internal deletion, this clone was ignored    
BM803213 ovary (pool of 3) Gene PODXL2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BQ277637 ovary, teratocarcinoma, cell line Gene PODXL2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ718726 sympathetic trunk Gene PODXL2, variant not shown         Suspected internal deletion, this clone was ignored    
BM727208 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene PODXL2, variant not shown         Suspected internal deletion, this clone was ignored    
BU740770 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene PODXL2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI