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Gene PMCHTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
30 supporting clones for gene PMCH back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CB047053 2 pooled tumors (clear cell type), Kidney .a 1 to 443 6 to 448   tiling clone, fully sequenced,   443/448
(98 %)
6 diff
(98.7 %id)
BG706895 brain, hypothalamus .a 12 to 766 1 to 756 K129N R130E E131R I132N G133W ... AAA   756/756
(100 %)
6 diff
(99.3 %id)
BI597555 brain, hypothalamus .a 12 to 767 1 to 760 exact AAA   760/760
(100 %)
13 diff
(98.3 %id)
NM_002674.2   .a 14 to 770 1 to 757 exact RefSeq,   757/757
(100 %)
0 diff
(100 %id)
BG706782 brain, hypothalamus .a 15 to 770 7 to 770 K80T V81S S82F N84E T85H ...     764/820
(93 %)
19 diff
(97.7 %id)
DB491504.
matches multiple genes
hypothalamus .a 16 to 292 1 to 275     also hits gene C12orf48 275/287
(95 %)
15 diff
(94.8 %id)
BC018048 Brain, hypothalamus .a 17 to 766 1 to 750 exact available from MGC, AAA   750/750
(100 %)
0 diff
(100 %id)
DB499374 hypothalamus .a 17 to 505 1 to 489       489/489
(100 %)
2 diff
(99.6 %id)
TI_45212452   .a 17 to 767 90 to 844 exact AAA   755/844
(89 %)
14 diff
(98.4 %id)
BI603807 brain, hypothalamus .a 18 to 766 8 to 755 exact AAA   748/755
(99 %)
9 diff
(98.9 %id)
TI_45210325   .a 18 to 766 91 to 838 exact tiling clone, AAA   748/838
(89 %)
9 diff
(99.0 %id)
AV701768 adrenal gland .a 25 to 698 27 to 691 F148X     665/694
(95 %)
16 diff
(97.7 %id)
M57703 hypothalamus .a 26 to 768 1 to 741 P104G L106Q A113D     741/741
(100 %)
12 diff
(98.4 %id)
AV708684 adrenal gland .a 43 to 402 1 to 360       360/360
(100 %)
0 diff
(100 %id)
AV727043 hypothalamus .a 43 to 769 1 to 728 F114X E128X G133X F148X     728/746
(97 %)
13 diff
(98.3 %id)
TI_1948088907   .a 66 to 582 128 to 647 E117D G156D R157K V158S Y159L ...     520/1461
(35 %)
20 diff
(98.7 %id)
TI_1948088997   .a 66 to 576 128 to 638       511/674
(75 %)
7 diff
(99.0 %id)
CV024031 mixed .a 80 to 576 1 to 500       500/500
(100 %)
31 diff
(93.8 %id)
BG216766   .a 140 to 777 61 to 700       640/832
(76 %)
35 diff
(95.8 %id)
DB570502 hypothalamus .a 286 to 766 1 to 481     Submitted on the opposite strand 481/481
(100 %)
1 diff
(99.8 %id)
AV723033 hypothalamus .a 323 to 768 3 to 454   tiling clone, AAA   458/454
(100 %)
8 diff
(98.3 %id)
CB047052 2 pooled tumors (clear cell type), Kidney .a 413 to 768 382 to 27   fully sequenced, AAA   356/356
(100 %)
0 diff
(100 %id)
AA482754 alveolar rhabdomyosarcoma .b-u 1 to 307 1 to 307 exact     307/310
(99 %)
5 diff
(98.4 %id)
DN915493   .b-u 2 to 642 1 to 640 exact tiling clone,   640/640
(100 %)
6 diff
(99.1 %id)
BE244920 leukopheresis .b-u 3 to 306 1 to 304 T11S D12X N16I     304/304
(100 %)
4 diff
(98.7 %id)
FN063790 breast carcinoma .b-u 210 to 311 1 to 97       97/98
(98 %)
5 diff
(94.9 %id)
AW291615   .c-u 1 to 374 385 to 12 exact tiling clone, AAA   374/392
(95 %)
0 diff
(100 %id)
AW976791   .c-u 8 to 453 1 to 447 exact tiling clone,   447/494
(90 %)
6 diff
(98.8 %id)
BF196106 carcinoid, lung .c-u 35 to 371 337 to 1 exact     337/337
(100 %)
0 diff
(100 %id)
AW363659 colon .c-u 174 to 412 21 to 256       236/256
(92 %)
6 diff
(97.7 %id)
AV723892 hypothalamus Gene PMCH, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI