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Gene PHOX2ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
63 supporting clones for gene PHOX2A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK290645 whole embryo, mainly head .a 1 to 1293 2 to 1294 exact tiling clone,   1294/1294
(100 %)
0 diff
(100 %id)
NM_005169.3   .a 1 to 1697 2 to 1698 exact RefSeq, AAA   1698/1698
(100 %)
0 diff
(100 %id)
DA001299   .a 1 to 495 2 to 496   capped   495/495
(100 %)
5 diff
(99.0 %id)
DA570323 whole embryo, mainly head .a 1 to 751 2 to 749   capped   748/827
(90 %)
15 diff
(98.2 %id)
DA928278 small intestine .a 1 to 563 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BQ890461 brain, neuroblastoma, cell line .a 16 to 840 1 to 838       838/928
(90 %)
34 diff
(96.4 %id)
BC041564 Brain, neuroblastoma .a 18 to 1697 1 to 1680 exact tiling clone, available from MGC, AAA   1680/1680
(100 %)
0 diff
(100 %id)
BQ070957 brain, neuroblastoma, cell line .a 20 to 654 1 to 644       644/1255
(51 %)
25 diff
(98.1 %id)
BU151137 brain, neuroblastoma, cell line .a 20 to 877 1 to 864       864/911
(94 %)
14 diff
(98.5 %id)
BQ899131 brain, neuroblastoma, cell line .a 20 to 899 1 to 896       896/906
(98 %)
27 diff
(97.1 %id)
CR596068 Neuroblastoma Cot 50-normalized .a 23 to 1673 1 to 1651 exact     1651/1651
(100 %)
0 diff
(100 %id)
AL529554 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 23 to 1093 1 to 1055 D23T F24L G25A A26P C27A ...     1055/1081
(97 %)
40 diff
(96.3 %id)
BX365822 Neuroblastoma Cot 10-normalized .a 25 to 776 1 to 751       751/751
(100 %)
26 diff
(96.6 %id)
CR593042 Neuroblastoma Cot 25-normalized .a 27 to 1689 1 to 1663 exact     1663/1663
(100 %)
0 diff
(100 %id)
CR600761 Neuroblastoma Cot 50-normalized .a 27 to 1684 1 to 1658 exact     1658/1658
(100 %)
0 diff
(100 %id)
BX376662 Neuroblastoma Cot 50-normalized .a 27 to 1002 1 to 967       967/1032
(93 %)
25 diff
(97.6 %id)
CR607262 Neuroblastoma Cot 25-normalized .a 29 to 1677 1 to 1649 exact     1649/1649
(100 %)
0 diff
(100 %id)
AL525508 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 29 to 1058 1 to 1018 Q29X K89N Q90S R91G R92A ...     1018/1023
(99 %)
34 diff
(96.7 %id)
BQ896585 sympathetic trunk .a 29 to 516 1 to 492       492/1334
(36 %)
27 diff
(98.0 %id)
BI196975 brain, neuroblastoma .a 194 to 1043 1 to 847       847/869
(97 %)
9 diff
(99.0 %id)
BX402164 Neuroblastoma Cot 25-normalized .a 219 to 866 207 to 855       796/855
(93 %)
22 diff
(97.5 %id)
BQ881657 brain, neuroblastoma, cell line .a 258 to 1069 1 to 822       822/956
(85 %)
27 diff
(97.2 %id)
CR604478 Neuroblastoma Cot 25-normalized .a 384 to 1667 1 to 1284       1284/1284
(100 %)
0 diff
(100 %id)
BX354726 Neuroblastoma Cot 25-normalized .a 384 to 1062 1 to 675       675/675
(100 %)
6 diff
(99.2 %id)
BF310680 brain, neuroblastoma .a 418 to 1190 1 to 759       759/813
(93 %)
32 diff
(96.1 %id)
CR621077 Neuroblastoma Cot 50-normalized .a 426 to 1671 1 to 1246       1246/1246
(100 %)
0 diff
(100 %id)
AL529571 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 426 to 1493 1 to 1047       1047/1055
(99 %)
33 diff
(96.9 %id)
CR607218 Neuroblastoma Cot 10-normalized .a 486 to 1690 1 to 1205       1205/1205
(100 %)
0 diff
(100 %id)
AL522064 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 486 to 1346 1 to 860       860/860
(100 %)
4 diff
(99.6 %id)
BF311651 brain, neuroblastoma .a 497 to 1101 1 to 603       603/603
(100 %)
11 diff
(98.2 %id)
BE313749 brain, neuroblastoma .a 517 to 1125 1 to 608       608/661
(91 %)
20 diff
(97.0 %id)
BE383103 brain, neuroblastoma .a 517 to 1136 1 to 616       616/617
(99 %)
6 diff
(99.1 %id)
BE383114 brain, neuroblastoma .a 517 to 1181 1 to 657       657/682
(96 %)
9 diff
(98.7 %id)
CR595525 Neuroblastoma Cot 25-normalized .a 550 to 1358 1 to 809       809/809
(100 %)
0 diff
(100 %id)
AL523034 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 563 to 1342 16 to 801       786/801
(98 %)
28 diff
(96.6 %id)
AL523041 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 563 to 1358 16 to 810       795/810
(98 %)
15 diff
(98.2 %id)
BX332379 Neuroblastoma Cot 25-normalized .a 643 to 1572 1 to 924       924/1006
(91 %)
24 diff
(97.7 %id)
BQ070560 brain, neuroblastoma, cell line .b 1 to 635 1 to 642 P157T tiling clone,   642/1179
(54 %)
25 diff
(97.9 %id)
BQ923850 brain, neuroblastoma, cell line .b 556 to 1392 15 to 858   tiling clone,   844/919
(91 %)
6 diff
(99.4 %id)
BQ071077 brain, neuroblastoma, cell line .b 594 to 1393 1 to 804       804/1028
(78 %)
9 diff
(99.2 %id)
BQ894680 brain, neuroblastoma, cell line .b 630 to 1397 1 to 768   AAA   768/768
(100 %)
3 diff
(99.7 %id)
BX375720 Neuroblastoma Cot 25-normalized .b 831 to 1393 28 to 591       564/591
(95 %)
6 diff
(99.0 %id)
BX395107 Neuroblastoma Cot 25-normalized .b 968 to 1391 18 to 441       424/441
(96 %)
6 diff
(98.7 %id)
BX352846 Neuroblastoma Cot 10-normalized .b 974 to 1395 1 to 422   tiling clone,   422/422
(100 %)
1 diff
(99.8 %id)
BU958704 mixed (pool of 40 RNAs) .b 1034 to 1399 1 to 366       366/397
(92 %)
5 diff
(98.8 %id)
AW068798 Bone, Hip .b 1343 to 1831 8 to 497       490/497
(98 %)
9 diff
(98.2 %id)
CF137440 lymph .b 1357 to 1666 31 to 340       310/340
(91 %)
6 diff
(98.3 %id)
BQ722345 sympathetic trunk .b 1357 to 1881 14 to 539       526/972
(54 %)
6 diff
(99.4 %id)
TI_154166860   .b 1357 to 1878 104 to 627       524/547
(95 %)
6 diff
(99.0 %id)
BY999572   .b 1358 to 1567 211 to 1       211/211
(100 %)
1 diff
(99.6 %id)
EC488235 Prostate .b 1361 to 1470 1 to 107       107/107
(100 %)
6 diff
(94.4 %id)
AW977590   .b 1368 to 1789 1 to 422       422/422
(100 %)
26 diff
(93.9 %id)
CX871231 embryonic stem .b 1371 to 1976 22 to 627   tiling clone,   606/627
(96 %)
6 diff
(99.1 %id)
BI001479 head_normal .b 1402 to 1751 4 to 350       347/350
(99 %)
6 diff
(98.3 %id)
BM469880 lymph, lymphoma, cell line .b 1573 to 2206 1 to 637   tiling clone,   637/1109
(57 %)
15 diff
(98.7 %id)
AW581009 leiomios .b 1763 to 2092 17 to 344       328/344
(95 %)
6 diff
(98.3 %id)
AW581077 leiomios .b 1763 to 2092 36 to 366       331/366
(90 %)
6 diff
(98.4 %id)
BQ327865 kidney_tumor .b 1912 to 2264 1 to 361   tiling clone,   361/364
(99 %)
26 diff
(92.9 %id)
BF856143 prostate_normal .b 1943 to 2180 1 to 241       241/253
(95 %)
15 diff
(94.1 %id)
BF856144 prostate_normal .b 1953 to 2180 1 to 231   tiling clone,   231/243
(95 %)
10 diff
(95.9 %id)
CD612035   .b 1962 to 2063 9 to 111       103/111
(92 %)
6 diff
(94.6 %id)
CR590341 Neuroblastoma Cot 25-normalized .c 1 to 928 1 to 928 exact tiling clone,   928/928
(100 %)
0 diff
(100 %id)
BX375755 Neuroblastoma Cot 25-normalized Gene PHOX2A, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BX375756 Neuroblastoma Cot 25-normalized Gene PHOX2A, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI