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Gene PDGFRBTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
249 representative clones for gene PDGFRB back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP286219 lung .a 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
4 diff
(99.4 %id)
BP288356 lung .a 23 to 605 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP360429 thalamus .a 35 to 616 1 to 582       582/582
(100 %)
0 diff
(100 %id)
NM_002609.3   .a 48 to 5765 1 to 5718 exact RefSeq,   5718/5718
(100 %)
5 diff
(100.0 %id)
BX504022   .a 52 to 466 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
BC032224 Brain, anaplastic oligodendroglioma with1p/19q loss .a 53 to 5754 12 to 5713 S180F available from MGC, AAA   5702/5702
(100 %)
4 diff
(100.0 %id)
TI_44385026   .a 53 to 877 87 to 913       827/837
(98 %)
30 diff
(96.5 %id)
BI554032 anaplastic oligodendroglioma with 1p/19qloss, brain .a 54 to 877 1 to 826       826/836
(98 %)
30 diff
(96.5 %id)
DA294202 hippocampus .a 63 to 608 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
BP380798   .a 68 to 714 1 to 647       647/647
(100 %)
9 diff
(98.7 %id)
DA853679 placenta .a 70 to 529 2 to 462   capped   461/461
(100 %)
2 diff
(99.6 %id)
CN268094 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 73 to 694 1 to 622       622/622
(100 %)
0 diff
(100 %id)
CN268095 embryonic stem cells, cell lines H1, H7, andH9 .a 73 to 682 1 to 610       610/610
(100 %)
0 diff
(100 %id)
BP288306 lung .a 88 to 669 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA144715 amygdala .a 117 to 683 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB250503 uterus .a 117 to 679 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AL703276 human skeletal muscle .a 126 to 383 1 to 258       258/258
(100 %)
1 diff
(99.7 %id)
DA305721 hippocampus .a 128 to 689 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AL596837 human spinal cord .a 132 to 687 27 to 582       556/582
(95 %)
6 diff
(99.0 %id)
DA772416 brain .a 134 to 715 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
M30493   .a 157 to 557 1 to 400       400/400
(100 %)
4 diff
(99.0 %id)
J03278 skin .a 160 to 5732 1 to 5570 exact tiling clone,   5570/5570
(100 %)
11 diff
(99.9 %id)
BM546285 ovary (pool of 3) .a 181 to 1156 21 to 997       977/1105
(88 %)
26 diff
(97.7 %id)
AK293093 uterus .a 212 to 4205 1 to 3994 F264S S769P tiling clone,   3994/3994
(100 %)
4 diff
(99.9 %id)
DB287791 uterus .a 213 to 776 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA172684 amygdala .a 217 to 774 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
CN268093 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 256 to 690 1 to 435       435/435
(100 %)
2 diff
(99.6 %id)
M21616 foreskin .a 331 to 5760 1 to 5427 E241D     5427/5427
(100 %)
13 diff
(99.8 %id)
CN481362 eye .a 347 to 946 1 to 600       600/600
(100 %)
0 diff
(100 %id)
CN481512 eye .a 347 to 911 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
T06390   .a 439 to 715 1 to 279       279/279
(100 %)
2 diff
(99.3 %id)
CN268097 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 507 to 1055 1 to 549       549/549
(100 %)
0 diff
(100 %id)
TI_1948150746   .a 516 to 1414 125 to 1021       899/1323
(67 %)
44 diff
(96.7 %id)
TI_1948151013   .a 516 to 1275 128 to 890       763/1376
(55 %)
23 diff
(98.4 %id)
TI_1948151285   .a 516 to 1275 121 to 881       761/1469
(51 %)
13 diff
(99.2 %id)
TI_1948151286   .a 516 to 1272 124 to 883       760/1173
(64 %)
20 diff
(98.3 %id)
TI_1948151570   .a 516 to 1450 125 to 1059       935/1371
(68 %)
46 diff
(96.7 %id)
TI_1948151571   .a 516 to 1275 123 to 882       760/1161
(65 %)
12 diff
(99.0 %id)
BF375451 stomach .a 640 to 747 1 to 108       108/108
(100 %)
0 diff
(100 %id)
CN268099 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 805 to 1439 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
CN268089 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 958 to 1617 1 to 660       660/660
(100 %)
2 diff
(99.7 %id)
BP265086 lung .a 1165 to 1980 1 to 831       829/831
(99 %)
32 diff
(96.2 %id)
CN268098 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1223 to 1894 1 to 671       671/671
(100 %)
4 diff
(99.5 %id)
BF929141 nervous_tumor .a 1517 to 1758 1 to 242       242/242
(100 %)
1 diff
(99.6 %id)
DB476247 hippocampus .a 1706 to 2184 1 to 479       479/484
(98 %)
2 diff
(99.6 %id)
DB476506 hippocampus .a 1706 to 2190 1 to 485       485/486
(99 %)
1 diff
(99.8 %id)
CN268088 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1759 to 2356 7 to 604       598/604
(99 %)
6 diff
(99.1 %id)
CN483678 eye .a 2435 to 3053 1 to 619       619/619
(100 %)
0 diff
(100 %id)
BU930979 ovary, teratocarcinoma, cell line .a 2447 to 3310 1 to 864       864/933
(92 %)
9 diff
(99.1 %id)
CN268090 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2488 to 3119 1 to 633       633/633
(100 %)
2 diff
(99.7 %id)
CN481180 eye .a 2567 to 2941 1 to 375       375/375
(100 %)
0 diff
(100 %id)
BE260791 brain, neuroblastoma .a 2695 to 3342 643 to 1     Submitted on the opposite strand 643/696
(92 %)
5 diff
(99.3 %id)
CD615160   .a 2751 to 3441 1 to 692       692/703
(98 %)
7 diff
(99.1 %id)
CD615159   .a 2759 to 3420 693 to 30       664/699
(94 %)
3 diff
(99.6 %id)
CO400347 Chondrosarcoma Lung Metastasis cell lines, lung .a 2839 to 3585 1 to 736       736/850
(86 %)
17 diff
(98.0 %id)
AL047744 uterus .a 2847 to 3497 1 to 646       646/666
(96 %)
10 diff
(98.5 %id)
TI_1948151014   .a 2853 to 3843 1108 to 121       986/1397
(70 %)
27 diff
(98.1 %id)
TI_1948151288   .a 2853 to 3843 1115 to 124       992/1437
(69 %)
22 diff
(98.5 %id)
TI_1948151573   .a 2855 to 3843 1114 to 126       987/1437
(68 %)
28 diff
(98.1 %id)
BF844226 head_neck .a 2940 to 3263 324 to 1     Submitted on the opposite strand 324/325
(99 %)
16 diff
(95.1 %id)
BG990778 head_neck .a 2957 to 3176 227 to 8       220/227
(96 %)
4 diff
(98.3 %id)
BF843818 head_neck .a 2980 to 3359 395 to 12     Submitted on the opposite strand 384/431
(89 %)
18 diff
(95.9 %id)
TI_1948150748   .a 2980 to 3843 983 to 121       863/1452
(59 %)
15 diff
(99.0 %id)
TI_1948151572   .a 3017 to 3843 952 to 120       833/1424
(58 %)
41 diff
(97.2 %id)
TI_1948151287   .a 3103 to 3843 859 to 119       741/1375
(53 %)
20 diff
(98.6 %id)
DB494138 hypothalamus .a 3123 to 3653 1 to 530       530/531
(99 %)
3 diff
(99.5 %id)
DB504667 hypothalamus .a 3123 to 3590 1 to 468       468/469
(99 %)
3 diff
(99.4 %id)
EB386173 eye, optic nerve .a 3191 to 3988 1 to 798       798/798
(100 %)
3 diff
(99.7 %id)
CD615158   .a 3233 to 3862 1 to 629       629/631
(99 %)
5 diff
(99.3 %id)
BF921803 nervous_tumor .a 3240 to 3475 236 to 2     Submitted on the opposite strand 235/236
(99 %)
0 diff
(100 %id)
BF812157 colon_ins .a 3249 to 3588 379 to 41     Submitted on the opposite strand 339/379
(89 %)
1 diff
(99.8 %id)
CD615157   .a 3259 to 4055 795 to 1       795/795
(100 %)
13 diff
(98.4 %id)
BE170894 head_neck .a 3330 to 3520 203 to 9     Submitted on the opposite strand 195/206
(94 %)
3 diff
(98.6 %id)
CD673125 eye, Iris .a 3417 to 3921 1 to 505       505/505
(100 %)
2 diff
(99.7 %id)
BE763617 nervous_tumor .a 3421 to 3725 356 to 50       307/356
(86 %)
1 diff
(99.8 %id)
BF772630 epid_tumor .a 3470 to 3850 387 to 12     Submitted on the opposite strand 376/387
(97 %)
0 diff
(100 %id)
ES307448 beard hair, skin .a 3527 to 3686 1 to 159       159/159
(100 %)
1 diff
(99.4 %id)
CD359738 testis .a 3573 to 4352 1 to 788       788/881
(89 %)
25 diff
(97.2 %id)
TI_57216489   .a 3973 to 4907 27 to 950       924/953
(96 %)
19 diff
(98.1 %id)
BI755841 brain .a 3974 to 4907 1 to 923       923/926
(99 %)
19 diff
(98.0 %id)
BM546097 ovary (pool of 3) .a 4124 to 5212 12 to 1113       1102/1169
(94 %)
60 diff
(94.9 %id)
BM718788 eye, fetal eye .a 4126 to 4868 1 to 742       742/742
(100 %)
2 diff
(99.8 %id)
BQ894423 dorsal root ganglia .a 4148 to 5007 1 to 869       869/907
(95 %)
21 diff
(97.7 %id)
AL527923 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 4203 to 4970 1 to 759   fully sequenced,   759/759
(100 %)
12 diff
(98.5 %id)
CR593034 Neuroblastoma Cot 25-normalized .a 4204 to 5725 1 to 1522   tiling clone,   1522/1522
(100 %)
0 diff
(100 %id)
BG696203 skin .a 4242 to 5083 1 to 844       844/847
(99 %)
10 diff
(98.9 %id)
BF207359 brain, neuroblastoma .a 4370 to 5096 1 to 724       724/963
(75 %)
23 diff
(97.7 %id)
BE260565 brain, neuroblastoma .a 4389 to 5124 1 to 726       726/967
(75 %)
26 diff
(97.4 %id)
CF456429 peripheral nervous system .a 4413 to 5137 23 to 747       725/755
(96 %)
5 diff
(99.4 %id)
BM710458 eye, RPE and Choroid .a 4417 to 4924 1 to 508       508/508
(100 %)
0 diff
(100 %id)
TI_57219745   .a 4472 to 5233 75 to 835       761/835
(91 %)
6 diff
(99.3 %id)
BI752921 brain .a 4479 to 5233 1 to 754       754/754
(100 %)
1 diff
(99.9 %id)
CD518518 White Matter .a 4516 to 5369 1 to 864       864/973
(88 %)
15 diff
(98.5 %id)
T49130 placenta .a 4534 to 4892 1 to 361       361/361
(100 %)
4 diff
(98.9 %id)
CD516498 White Matter .a 4571 to 5357 30 to 814       785/893
(87 %)
8 diff
(99.2 %id)
BQ478519.
matches multiple genes
insulinoma, Pancreas .a 4633 to 5209 8 to 584     also hits gene nahemu 577/584
(98 %)
6 diff
(99.0 %id)
CN268092 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 4634 to 5303 1 to 670       670/672
(99 %)
3 diff
(99.6 %id)
BF858985 prostate_tumor .a 4679 to 4926 261 to 15     Submitted on the opposite strand 247/273
(90 %)
0 diff
(100 %id)
BE771971 prostate_tumor .a 4682 to 5092 431 to 21       411/431
(95 %)
0 diff
(100 %id)
AI791734 Kidney, kidney tumor .a 4733 to 5333 1 to 596       596/596
(100 %)
7 diff
(98.9 %id)
TI_154122009   .a 4742 to 5754 1075 to 85   AAA   991/1023
(96 %)
33 diff
(96.8 %id)
ES313097 beard hair, skin .a 4754 to 4867 1 to 113       113/113
(100 %)
1 diff
(99.2 %id)
BF378981 uterus .a 4778 to 5106 1 to 329       329/329
(100 %)
1 diff
(99.7 %id)
BU168263 hepatocellular carcinoma, cell line, Liver .a 4793 to 5617 12 to 858       847/1201
(70 %)
29 diff
(97.6 %id)
BI057762 placenta_normal .a 4795 to 5200 436 to 32       405/436
(92 %)
0 diff
(100 %id)
ES313897 beard hair, skin .a 4799 to 5269 1 to 471       471/471
(100 %)
0 diff
(100 %id)
BM704575 eye, RPE and Choroid .a 4814 to 5258 1 to 445   fully sequenced,   445/445
(100 %)
0 diff
(100 %id)
CD615161   .a 4830 to 5192 302 to 666       365/388
(94 %)
1 diff
(99.8 %id)
BQ367785 placenta_normal .a 4836 to 5222 382 to 1       382/382
(100 %)
19 diff
(95.1 %id)
CD615162   .a 4836 to 5197 378 to 17       362/382
(94 %)
0 diff
(100 %id)
TI_154108285   .a 4841 to 5754 993 to 92   AAA   902/954
(94 %)
20 diff
(98.0 %id)
TI_154117714   .a 4851 to 5758 991 to 96   AAA   896/900
(99 %)
16 diff
(98.3 %id)
CA394100 eye, RPE/choroid .a 4860 to 5404 1 to 545       545/545
(100 %)
0 diff
(100 %id)
BQ345821 nervous_tumor .a 4874 to 5089 214 to 2       213/233
(91 %)
0 diff
(100 %id)
BF526931 brain, glioblastoma with EGFR amplification .a 4874 to 5681 1 to 800       800/883
(90 %)
18 diff
(98.0 %id)
AL563011 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 4940 to 5725 782 to 1   fully sequenced,   782/782
(100 %)
8 diff
(99.0 %id)
TI_154097716   .a 4941 to 5758 892 to 88   AAA   805/813
(99 %)
24 diff
(97.1 %id)
BM702001.
matches multiple genes
eye, optic nerve .a 4954 to 5545 1 to 592     Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base), also hits gene WDR8 592/592
(100 %)
0 diff
(100 %id)
BQ709453 Spleen .a 4963 to 5659 1 to 698       698/1001
(69 %)
20 diff
(98.1 %id)
BQ711004 Spleen .a 4964 to 5612 1 to 654       654/989
(66 %)
18 diff
(98.2 %id)
CA447532 Chondrosarcoma, Left Pelvis .a 4989 to 5754 784 to 19   AAA   766/766
(100 %)
3 diff
(99.7 %id)
AI453355 adenocarcinoma, Pancreas .a 4998 to 5754 778 to 24   AAA   755/767
(98 %)
39 diff
(95.0 %id)
AI888068 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 5015 to 5754 739 to 1       739/739
(100 %)
23 diff
(96.9 %id)
TI_154127317   .a 5015 to 5754 840 to 108   AAA   733/957
(76 %)
18 diff
(98.2 %id)
BQ576139 Chondrosarcoma Grade II, Left Pelvis .a 5030 to 5756 745 to 19   AAA   727/727
(100 %)
5 diff
(99.4 %id)
BQ181788 Knee, Osteoarthritic Cartilage .a 5045 to 5754 728 to 19   AAA   710/710
(100 %)
1 diff
(99.9 %id)
AI565045 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5091 to 5759 664 to 2       663/689
(96 %)
0 diff
(100 %id)
BQ008715 Chondrosarcoma, Left Pelvis .a 5096 to 5757 679 to 19   AAA   661/661
(100 %)
2 diff
(99.7 %id)
BQ004177 Chondrosarcoma, Left Pelvis .a 5096 to 5754 676 to 19   AAA   658/658
(100 %)
2 diff
(99.7 %id)
BU626345 Bone, Subchondral Bone .a 5096 to 5758 680 to 19   AAA   662/662
(100 %)
2 diff
(99.7 %id)
CA440821 lung, Metastatic Chondrosarcoma .a 5096 to 5758 680 to 19   AAA   662/662
(100 %)
3 diff
(99.6 %id)
BQ028761 Bone, Subchondral Bone .a 5097 to 5754 676 to 19   AAA   658/658
(100 %)
1 diff
(99.9 %id)
BQ014550 Chondrosarcoma, Left Pubic Bone .a 5097 to 5758 680 to 19   AAA   662/662
(100 %)
1 diff
(99.9 %id)
CA431570 cell lines, Enchondroma .a 5104 to 5754 668 to 19   AAA   650/650
(100 %)
3 diff
(99.6 %id)
AA445971   .a 5111 to 5457 1 to 345   fully sequenced,   345/345
(100 %)
3 diff
(99.2 %id)
TI_154103614   .a 5117 to 5754 697 to 78   AAA   620/772
(80 %)
25 diff
(96.8 %id)
CA422027 Bone, Enchondroma cell line .a 5122 to 5758 655 to 19   AAA   637/641
(99 %)
2 diff
(99.7 %id)
CB961828 placenta, pre-eclamptic placenta .a 5146 to 5754 22 to 631   AAA   610/631
(96 %)
6 diff
(99.1 %id)
BQ673600 epidermoid carcinoma, cell line, salivary gland .a 5150 to 5754 638 to 34   AAA Submitted on the opposite strand 605/919
(65 %)
17 diff
(98.2 %id)
BM671905 eye, RPE and Choroid .a 5156 to 5754 617 to 19   AAA   599/599
(100 %)
2 diff
(99.7 %id)
AA599936 bone marrow stroma .a 5197 to 5754 557 to 1       557/557
(100 %)
11 diff
(98.1 %id)
BP374868 umbilical cord .a 5203 to 5761 1 to 559       559/583
(95 %)
2 diff
(99.7 %id)
AA805227 brain, substantia nigra .a 5205 to 5758 551 to 1       551/551
(100 %)
9 diff
(98.4 %id)
AW138171   .a 5205 to 5754 567 to 18   AAA   550/550
(100 %)
1 diff
(99.9 %id)
BQ183233 Knee, Osteoarthritic Cartilage .a 5205 to 5754 568 to 19   AAA   550/550
(100 %)
1 diff
(99.9 %id)
BU729662.
matches multiple genes
eye, optic nerve .a 5206 to 5758 571 to 19   AAA also hits gene WDR8 553/553
(100 %)
1 diff
(99.9 %id)
CA417033 Chondrosarcoma Cell line .a 5206 to 5754 567 to 19   AAA   549/549
(100 %)
4 diff
(99.3 %id)
AI016554   .a 5208 to 5755 549 to 3       547/549
(99 %)
0 diff
(100 %id)
BF063796 colon, colon tumor, RER+ .a 5210 to 5753 543 to 1       543/543
(100 %)
3 diff
(99.5 %id)
ES309946 scalp interfollicular dermis, skin .a 5221 to 5732 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
AI796557 Kidney .a 5223 to 5759 541 to 5       537/541
(99 %)
0 diff
(100 %id)
BF590788 colon, colon tumor, RER+ .a 5225 to 5758 533 to 1       533/533
(100 %)
2 diff
(99.7 %id)
BU730656 eye, RPE and Choroid .a 5228 to 5758 548 to 19   fully sequenced, AAA   530/530
(100 %)
2 diff
(99.7 %id)
AI337826 uterus .a 5233 to 5754 519 to 1       519/519
(100 %)
5 diff
(99.1 %id)
W47575 senescent fibroblast .a 5242 to 5544 1 to 305   fully sequenced,   305/305
(100 %)
5 diff
(98.4 %id)
DB545020 hippocampus .a 5252 to 5760 1 to 510     Submitted on the opposite strand 510/510
(100 %)
5 diff
(99.1 %id)
BP391679 pancreatic islet .a 5256 to 5754 1 to 500     Submitted on the opposite strand 500/500
(100 %)
2 diff
(99.6 %id)
BP391931 pancreatic islet .a 5259 to 5758 1 to 500     Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
AA428115   .a 5259 to 5528 1 to 267   fully sequenced,   267/267
(100 %)
5 diff
(98.2 %id)
AI379090 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5265 to 5759 498 to 4       495/498
(99 %)
0 diff
(100 %id)
DB575915 hypothalamus .a 5266 to 5754 1 to 489     Submitted on the opposite strand 489/489
(100 %)
2 diff
(99.6 %id)
AI733424 Kidney, kidney tumor .a 5269 to 5760 492 to 1       492/492
(100 %)
1 diff
(99.8 %id)
AI656227 pooled germ cell tumors .a 5269 to 5760 492 to 1       492/492
(100 %)
3 diff
(99.4 %id)
AI685229 adenocarcinoma, Pancreas .a 5269 to 5755 490 to 4       487/490
(99 %)
0 diff
(100 %id)
AI818894 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5269 to 5759 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
AW268361 lung, two pooled squamous cell carcinomas .a 5269 to 5754 498 to 13   AAA   486/486
(100 %)
1 diff
(99.8 %id)
BE220939 malignant melanoma, metastatic to lymphnode, skin .a 5269 to 5758 490 to 1       490/490
(100 %)
1 diff
(99.8 %id)
BE464754 carcinoid, lung .a 5269 to 5761 492 to 1       492/492
(100 %)
4 diff
(99.2 %id)
BE856032 Prostate .a 5277 to 5758 481 to 1       481/481
(100 %)
2 diff
(99.6 %id)
AI638317 pooled germ cell tumors .a 5283 to 5758 477 to 1       477/477
(100 %)
2 diff
(99.6 %id)
AI654562 pooled germ cell tumors .a 5284 to 5758 476 to 1       476/476
(100 %)
2 diff
(99.6 %id)
BF446194 Prostate .a 5284 to 5759 476 to 1       476/476
(100 %)
1 diff
(99.8 %id)
BF224429 Kidney .a 5287 to 5759 473 to 1       473/473
(100 %)
1 diff
(99.8 %id)
AI354826 lung .a 5293 to 5754 462 to 1       462/462
(100 %)
2 diff
(99.6 %id)
BE218229 carcinoid, lung .a 5295 to 5761 467 to 1       467/467
(100 %)
1 diff
(99.8 %id)
AI825615 pooled germ cell tumors .a 5298 to 5759 462 to 1       462/462
(100 %)
2 diff
(99.6 %id)
DB565173 hypothalamus .a 5303 to 5754 1 to 452     Submitted on the opposite strand 452/452
(100 %)
2 diff
(99.6 %id)
AI659609 Prostate .a 5304 to 5760 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
BF446273 Prostate .a 5307 to 5760 454 to 1       454/454
(100 %)
1 diff
(99.8 %id)
BF591427 colon, colon tumor, RER+ .a 5308 to 5755 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
DB545244 hippocampus .a 5310 to 5760 1 to 451     Submitted on the opposite strand 451/451
(100 %)
1 diff
(99.8 %id)
BP388360 pancreatic islet .a 5310 to 5751 1 to 442     Submitted on the opposite strand 442/442
(100 %)
3 diff
(99.4 %id)
AI651684 pooled germ cell tumors .a 5313 to 5758 445 to 1       445/445
(100 %)
2 diff
(99.6 %id)
CA445847 Chondrosarcoma, Left Pelvis .a 5314 to 5754 459 to 19   AAA   441/441
(100 %)
1 diff
(99.8 %id)
BF000311 colon, colon tumor, RER+ .a 5321 to 5761 443 to 3       441/443
(99 %)
0 diff
(100 %id)
AA393275   .a 5324 to 5732 1 to 406   fully sequenced,   406/406
(100 %)
7 diff
(98.3 %id)
T49131 placenta .a 5352 to 5754 405 to 1       405/408
(99 %)
8 diff
(98.1 %id)
AI801280 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 5378 to 5754 403 to 27   AAA   377/377
(100 %)
1 diff
(99.8 %id)
H71190 liver and spleen .a 5405 to 5758 362 to 1     Submitted on the opposite strand 362/370
(97 %)
15 diff
(96.0 %id)
AA576501 colon, colon tumor RER+ .a 5407 to 5762 379 to 24   AAA   356/356
(100 %)
1 diff
(99.8 %id)
AA853483 Bone, Hip .a 5412 to 5715 303 to 1       303/304
(99 %)
5 diff
(98.4 %id)
AA430021   .a 5427 to 5761 332 to 1   fully sequenced,   332/332
(100 %)
6 diff
(98.2 %id)
R83745 breast .a 5431 to 5730 300 to 1       300/300
(100 %)
2 diff
(99.4 %id)
BQ189307 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5452 to 5757 1 to 307   AAA   307/307
(100 %)
2 diff
(99.4 %id)
BQ187002 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5452 to 5757 1 to 306   AAA   306/306
(100 %)
1 diff
(99.7 %id)
AW292688   .a 5453 to 5758 323 to 18   AAA   306/306
(100 %)
3 diff
(99.1 %id)
AW274878 pooled germ cell tumors .a 5467 to 5760 294 to 1       294/294
(100 %)
1 diff
(99.7 %id)
BF056827 pooled germ cell tumors .a 5467 to 5760 294 to 1       294/294
(100 %)
1 diff
(99.7 %id)
AA401362.
matches multiple genes
ovarian tumor, ovary .a 5482 to 5740 1 to 259     also hits gene SRPRB 259/259
(100 %)
1 diff
(99.7 %id)
AH001541 hydatidiform mole .a 5484 to 6359 1 to 874       874/874
(100 %)
3 diff
(99.7 %id)
M25785   .a 5484 to 6359 1 to 874   tiling clone,   874/874
(100 %)
3 diff
(99.7 %id)
AW384968 head_neck .a 5492 to 5648 159 to 7       153/169
(90 %)
0 diff
(100 %id)
AA426020   .a 5498 to 5761 264 to 1   fully sequenced,   264/264
(100 %)
2 diff
(99.3 %id)
AA852229 Bone, Hip .a 5499 to 5761 288 to 27       262/288
(90 %)
0 diff
(100 %id)
W47408 senescent fibroblast .a 5514 to 5758 248 to 1   fully sequenced,   248/248
(100 %)
2 diff
(99.2 %id)
AA403019 ovarian tumor, ovary .a 5515 to 5758 244 to 1       244/244
(100 %)
1 diff
(99.6 %id)
AA398624   .a 5530 to 5762 234 to 1   fully sequenced,   234/234
(100 %)
3 diff
(98.8 %id)
AI913145 Kidney .a 5539 to 5758 220 to 1       220/220
(100 %)
2 diff
(99.1 %id)
AA668712 ovary .a 5548 to 5754 1 to 207   AAA Submitted on the opposite strand 207/207
(100 %)
1 diff
(99.6 %id)
C01850   .a 5553 to 5758 1 to 206       206/206
(100 %)
1 diff
(99.6 %id)
AI573142 adenocarcinoma, Pancreas .a 5553 to 5760 208 to 1       208/208
(100 %)
1 diff
(99.6 %id)
BQ028957 Bone, Subchondral Bone .a 5554 to 5754 219 to 19   AAA   201/201
(100 %)
2 diff
(99.1 %id)
AB209657 Spleen .b 1 to 3860 1 to 3859 D192T N193T R194A T195P L196W ... tiling clone,   3859/3859
(100 %)
1 diff
(100.0 %id)
BG536086 lung .b 772 to 1125 1 to 355       355/355
(100 %)
2 diff
(99.5 %id)
AA359391 lung .b 3718 to 3910 1 to 193       193/193
(100 %)
0 diff
(100 %id)
BQ894696 dorsal root ganglia .b 3763 to 4657 1 to 907   tiling clone,   907/918
(98 %)
14 diff
(98.5 %id)
BM547372 ovary (pool of 3) .b 3811 to 4870 19 to 1085       1067/1085
(98 %)
35 diff
(96.8 %id)
BI768156 pooled lung and spleen .b 3894 to 4694 3 to 795       793/796
(99 %)
13 diff
(98.4 %id)
TI_57180607   .b 3894 to 4694 29 to 821       793/822
(96 %)
13 diff
(98.5 %id)
TI_57216280   .b 3952 to 4695 19 to 756       738/758
(97 %)
6 diff
(99.3 %id)
BI758127 brain .b 3961 to 4695 1 to 729       729/731
(99 %)
8 diff
(99.0 %id)
BM917707 blood, natural killer cells, cell line .b 3984 to 4791 1 to 813       813/1069
(76 %)
9 diff
(99.2 %id)
CV345494 kidney_tumor .b 4171 to 4449 279 to 8     Submitted on the opposite strand 272/279
(97 %)
0 diff
(100 %id)
CN483583 eye .b 4391 to 4839 1 to 449   tiling clone,   449/449
(100 %)
0 diff
(100 %id)
AW818427 stomach .b 4551 to 4860 329 to 16       314/339
(92 %)
0 diff
(100 %id)
ES314245 occipital scalp hair, skin .b 4554 to 4702 1 to 149       149/149
(100 %)
0 diff
(100 %id)
AI635586 pooled germ cell tumors .b 4629 to 5034 406 to 1   tiling clone,   406/406
(100 %)
1 diff
(99.8 %id)
AW003358 pooled germ cell tumors .b 4629 to 5034 406 to 1       406/406
(100 %)
1 diff
(99.8 %id)
BQ343720 nervous_tumor .b 4668 to 4805 147 to 11       137/147
(93 %)
0 diff
(100 %id)
DA022850   .c 1 to 567 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
EU826595   .c 44 to 1054 1 to 1011   tiling clone,   1011/1011
(100 %)
0 diff
(100 %id)
BQ723697 sympathetic trunk .d 1 to 908 1 to 918 K100E G101R D102G V103R A104C ... tiling clone,   918/920
(99 %)
24 diff
(97.4 %id)
CD558750 White Matter .e 1 to 536 1 to 538 P2S W23* tiling clone,   538/1309
(41 %)
16 diff
(98.8 %id)
BF850596 lung_normal .e 316 to 668 1 to 355       355/355
(100 %)
16 diff
(95.5 %id)
BI012221 lung_normal .e 318 to 784 480 to 15   tiling clone,   466/480
(97 %)
0 diff
(100 %id)
BF377002 testis_normal .e 619 to 760 1 to 142   tiling clone,   142/142
(100 %)
0 diff
(100 %id)
BM008420 Spleen .f 1 to 738 1 to 738 exact tiling clone, AAA   738/739
(99 %)
12 diff
(98.4 %id)
TI_59383153   .f 1 to 738 102 to 839 exact AAA   738/739
(99 %)
12 diff
(98.4 %id)
BF855764 prostate_normal .f 107 to 417 1 to 312   tiling clone,   312/312
(100 %)
6 diff
(98.1 %id)
DB251936 uterus .g 1 to 586 2 to 587   tiling clone, capped   586/586
(100 %)
1 diff
(99.9 %id)
DA908760   .g 3 to 554 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
CR612121 Neuroblastoma Cot 10-normalized .g 14 to 2066 1 to 2053 exact tiling clone,   2053/2053
(100 %)
0 diff
(100 %id)
AL520856 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .g 14 to 1010 1 to 990       990/1000
(99 %)
8 diff
(99.2 %id)
BX365788 Neuroblastoma Cot 10-normalized .g 14 to 838 1 to 823       823/823
(100 %)
2 diff
(99.8 %id)
BI906032 leukocyte .g 14 to 798 1 to 804       804/809
(99 %)
26 diff
(96.8 %id)
TI_57231458   .g 14 to 798 41 to 844       804/849
(94 %)
26 diff
(97.0 %id)
DB501577 hypothalamus .g 30 to 510 1 to 481       481/481
(100 %)
1 diff
(99.8 %id)
AL561921 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .g 1055 to 2074 1018 to 1 K7Q     1018/1018
(100 %)
20 diff
(98.1 %id)
BX365787 Neuroblastoma Cot 10-normalized .g 1470 to 2018 584 to 43       542/588
(92 %)
0 diff
(100 %id)
DB568243 hypothalamus .g 1601 to 2093 1 to 493     Submitted on the opposite strand 493/493
(100 %)
1 diff
(99.8 %id)
DB572777 hypothalamus .g 1623 to 2093 1 to 471   tiling clone, Submitted on the opposite strand 471/471
(100 %)
0 diff
(100 %id)
AI038873 senescent fibroblast .g 1692 to 2093 414 to 13   AAA   402/402
(100 %)
2 diff
(99.6 %id)
BM914419 Spleen .h-u 1 to 858 1 to 864 N7X E8* tiling clone,   864/979
(88 %)
25 diff
(97.5 %id)
CN268096 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 1 to 612 1 to 612 exact tiling clone,   612/612
(100 %)
1 diff
(99.9 %id)
AI769695 2 pooled tumors (clear cell type), Kidney .j-u 1 to 433 433 to 1 T19I A29V L31F tiling clone,   433/433
(100 %)
9 diff
(98.0 %id)
BF510020   .k-u 1 to 402 402 to 1 exact tiling clone,   402/446
(90 %)
2 diff
(99.6 %id)
BI007367 kidney_tumor .l 1 to 285 14 to 302 N11H F12L E13R W14V T15D ... tiling clone,   289/302
(95 %)
9 diff
(97.1 %id)
CV420656 prostate_normal Gene PDGFRB, variant not shown              
199 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j-u, .k-u, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI