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Gene PDGFBTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
134 supporting clones for gene PDGFB back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
M12783 placenta .a 1 to 3801 1 to 3798 exact tiling clone,   3798/3798
(100 %)
21 diff
(99.5 %id)
CD387059 embryonic trophoblasts, made from WA01 stemcells .a 74 to 254 29 to 211   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 183/214
(85 %)
3 diff
(98.6 %id)
CD386140 embryonic trophoblasts, made from WA01 stemcells .a 75 to 257 17 to 200       184/200
(92 %)
6 diff
(97.0 %id)
CB960288 Human Placenta, placenta .a 77 to 786 28 to 744   tiling clone,   717/836
(85 %)
14 diff
(98.4 %id)
BX366755 Placenta Cot 25-normalized .a 93 to 785 1 to 693       693/693
(100 %)
22 diff
(96.9 %id)
NM_002608.2   .a 104 to 3446 1 to 3343 exact RefSeq, AAA   3343/3343
(100 %)
0 diff
(100 %id)
CB995362 placenta, pre-eclamptic placenta .a 184 to 743 28 to 597       570/1155
(49 %)
18 diff
(98.5 %id)
BQ962526 epithelioid carcinoma cell line, Pancreas .a 266 to 954 21 to 708       688/906
(75 %)
19 diff
(98.0 %id)
BC077725 Pancreas, epithelioid carcinoma .a 269 to 2041 1 to 1773 exact tiling clone, available from MGC, AAA   1773/1773
(100 %)
1 diff
(100.0 %id)
AL535130 brain, fetal brain .a 305 to 1199 1 to 890       890/890
(100 %)
12 diff
(98.7 %id)
BC029822 Brain, Lung, Testis, adult, pooled whole .a 781 to 3446 1 to 2666 exact available from MGC, AAA   2666/2666
(100 %)
0 diff
(100 %id)
BI824698 pooled brain, lung, testis .a 781 to 990 1 to 208       208/403
(51 %)
2 diff
(99.6 %id)
X02744   .a 976 to 3473 1 to 2498 exact     2498/2498
(100 %)
21 diff
(99.2 %id)
DN999335   .a 984 to 1612 9 to 637       629/637
(98 %)
6 diff
(99.1 %id)
BE146179 head_neck .a 1043 to 1410 375 to 8     Submitted on the opposite strand 368/377
(97 %)
5 diff
(98.7 %id)
BE146119 head_neck .a 1048 to 1392 8 to 351       344/360
(95 %)
8 diff
(97.8 %id)
BQ350240 head_neck .a 1059 to 1392 19 to 350       332/362
(91 %)
10 diff
(97.3 %id)
BE146037 head_neck .a 1066 to 1387 331 to 7     Submitted on the opposite strand 323/331
(97 %)
4 diff
(98.8 %id)
BE146344 head_neck .a 1069 to 1392 1 to 323       323/335
(96 %)
8 diff
(97.7 %id)
CR456538   .a 1085 to 1920 1 to 836 exact     836/836
(100 %)
0 diff
(100 %id)
BF757851 colon .a 1092 to 1535 1 to 445       445/445
(100 %)
5 diff
(98.9 %id)
CU013138 Synthetic constructs .a 1092 to 1818 19 to 745 exact     727/760
(95 %)
7 diff
(99.1 %id)
CR541807   .a 1093 to 1818 1 to 726 exact     726/726
(100 %)
0 diff
(100 %id)
CV030260 mixed .a 1093 to 1649 1 to 557       557/557
(100 %)
0 diff
(100 %id)
BG387377 adenocarcinoma cell line, colon .a 1096 to 1835 1 to 738       738/738
(100 %)
7 diff
(99.1 %id)
AW579538 head_neck .a 1108 to 1388 294 to 7       288/294
(97 %)
14 diff
(95.3 %id)
CR601724 fetal brain .a 1109 to 3447 1 to 2339   tiling clone,   2339/2339
(100 %)
0 diff
(100 %id)
BX418772 brain, fetal brain .a 1109 to 2091 1 to 970       970/980
(98 %)
15 diff
(98.5 %id)
BX446232 brain, fetal brain .a 1109 to 1845 1 to 737       737/905
(81 %)
33 diff
(96.4 %id)
DA180634 amygdala .a 1131 to 1710 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA197744 brain .a 1132 to 1533 2 to 403   capped   402/402
(100 %)
0 diff
(100 %id)
DA889114   .a 1137 to 1686 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA885804   .a 1148 to 1383 2 to 237   capped   236/236
(100 %)
0 diff
(100 %id)
AI909868 breast .a 1153 to 1417 1 to 266       266/266
(100 %)
2 diff
(99.3 %id)
BQ361608 ovary .a 1154 to 1460 316 to 11       306/323
(94 %)
2 diff
(99.4 %id)
TI_1948073771   .a 1154 to 1817 790 to 127       664/1409
(47 %)
18 diff
(98.8 %id)
AI909827 breast .a 1158 to 1423 284 to 17       268/284
(94 %)
1 diff
(99.7 %id)
X03702   .a 1168 to 2923 1 to 1758       1758/1758
(100 %)
9 diff
(99.5 %id)
DA170141 amygdala .a 1179 to 1745 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA880877   .a 1179 to 1672 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
DA889324   .a 1183 to 1730 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BM811521 ovary (pool of 3) .a 1195 to 2013 119 to 957       839/1091
(76 %)
50 diff
(95.5 %id)
TI_1948073944   .a 1246 to 1817 705 to 134       572/1419
(40 %)
13 diff
(99.1 %id)
TI_1948073601   .a 1291 to 1817 656 to 126       531/1480
(35 %)
7 diff
(99.6 %id)
BG008010 placenta_normal .a 1292 to 1736 9 to 453       445/453
(98 %)
6 diff
(98.7 %id)
BG015499 placenta_normal .a 1389 to 1869 482 to 3       480/482
(99 %)
0 diff
(100 %id)
H55385   .a 1549 to 1693 1 to 145       145/145
(100 %)
0 diff
(100 %id)
BQ367608 placenta_normal .a 1551 to 1860 1 to 310       310/310
(100 %)
1 diff
(99.7 %id)
DA839825 placenta .a 1648 to 2204 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
BX952119   .a 1730 to 2225 1 to 496       496/496
(100 %)
0 diff
(100 %id)
BE930120 placenta_normal .a 1746 to 1930 1 to 183       183/183
(100 %)
2 diff
(99.0 %id)
R79369 placenta .a 1747 to 2141 1 to 405       405/428
(94 %)
19 diff
(95.6 %id)
R14265 whole brain .a 1843 to 2016 7 to 183       177/183
(96 %)
5 diff
(97.3 %id)
BX409378 brain, fetal brain .a 1848 to 2648 1 to 792       792/893
(88 %)
20 diff
(97.8 %id)
BG423745 Kidney, renal cell adenocarcinoma .a 1853 to 2518 1 to 664       664/948
(70 %)
19 diff
(98.0 %id)
AK022920   .a 1897 to 3473 1 to 1577   available from FLJ, AAA   1577/1577
(100 %)
1 diff
(100.0 %id)
AU128466   .a 1898 to 2046 2 to 151   capped   150/150
(100 %)
3 diff
(98.0 %id)
BX280801 adenocarcinoma, colon .a 1939 to 2218 1 to 280       280/280
(100 %)
0 diff
(100 %id)
DA541446 lung .a 1939 to 2422 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
CD634599   .a 2015 to 2620 1 to 608       608/608
(100 %)
6 diff
(99.1 %id)
BF883951 lung_tumor .a 2035 to 2524 508 to 19     Submitted on the opposite strand 490/508
(96 %)
0 diff
(100 %id)
CD634602   .a 2087 to 2795 1 to 710       710/710
(100 %)
4 diff
(99.5 %id)
BG253114 adenocarcinoma, cell line, Liver .a 2092 to 2720 1 to 632       632/926
(68 %)
7 diff
(99.3 %id)
M32009   .a 2098 to 3470 1 to 1373       1373/1373
(100 %)
1 diff
(100.0 %id)
BE905572 epithelioid carcinoma, Pancreas .a 2130 to 2713 1 to 592       592/771
(76 %)
13 diff
(98.4 %id)
TI_149285930   .a 2172 to 2878 795 to 93   AAA   703/781
(90 %)
26 diff
(96.7 %id)
BI050430 placenta_normal .a 2178 to 2514 19 to 355       337/355
(94 %)
6 diff
(98.4 %id)
CR620580 Placenta Cot 25-normalized .a 2218 to 3476 1 to 1259       1259/1259
(100 %)
0 diff
(100 %id)
BX377589 Placenta Cot 25-normalized .a 2218 to 3354 1 to 1123       1123/1134
(99 %)
16 diff
(98.6 %id)
BX377588 Placenta Cot 25-normalized .a 2245 to 3428 1180 to 6       1175/1184
(99 %)
0 diff
(100 %id)
BM971773 lung .a 2313 to 2878 585 to 19   AAA   567/567
(100 %)
5 diff
(99.2 %id)
CD634600   .a 2360 to 2779 722 to 305       418/424
(98 %)
0 diff
(100 %id)
CN268079 embryonic stem cells, cell lines H1, H7, andH9 .a 2374 to 2927 1 to 554       554/555
(99 %)
1 diff
(99.9 %id)
CN268078 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2379 to 2622 1 to 244       244/244
(100 %)
1 diff
(99.6 %id)
BF847671 lung_normal .a 2381 to 2637 270 to 14     Submitted on the opposite strand 257/270
(95 %)
0 diff
(100 %id)
CD634601   .a 2397 to 2779 685 to 305       381/387
(98 %)
0 diff
(100 %id)
BM998882 lung, Lung Focal Fibrosis .a 2403 to 3105 1 to 702     Submitted on the opposite strand 702/702
(100 %)
8 diff
(98.9 %id)
BX446231 brain, fetal brain .a 2407 to 3413 1040 to 37       1004/1044
(96 %)
0 diff
(100 %id)
BX366754 Placenta Cot 25-normalized .a 2438 to 3443 999 to 1       999/1081
(92 %)
23 diff
(97.9 %id)
BE698090 uterus_tumor .a 2441 to 2615 184 to 10       175/184
(95 %)
5 diff
(97.3 %id)
BF093034 testis_normal .a 2470 to 2980 1 to 510       510/510
(100 %)
6 diff
(98.9 %id)
AL565792 brain, fetal brain .a 2503 to 3441 942 to 7       936/942
(99 %)
0 diff
(100 %id)
AI346510 adenocarcinoma, colon .a 2584 to 3485 898 to 2   tiling clone,   897/923
(97 %)
0 diff
(100 %id)
BF513071   .a 2624 to 3025 9 to 410     Submitted on the opposite strand 402/420
(95 %)
4 diff
(99.1 %id)
W67710 heart .a 2630 to 3075 1 to 439   fully sequenced,   439/439
(100 %)
2 diff
(99.6 %id)
TI_227713233   .a 2631 to 3467 897 to 62   AAA   836/1047
(79 %)
6 diff
(99.5 %id)
T49539 placenta .a 2641 to 2986 1 to 360       360/388
(92 %)
22 diff
(94.4 %id)
BF962691 nervous_normal .a 2673 to 3266 596 to 6       591/596
(99 %)
0 diff
(100 %id)
AA335408 epididymis .a 2693 to 3048 1 to 362       362/362
(100 %)
10 diff
(97.3 %id)
T28363 colon, epididymis .a 2693 to 3132 1 to 437       437/438
(99 %)
14 diff
(96.9 %id)
BM543763 ovary (pool of 3) .a 2700 to 3204 22 to 525       504/1483
(33 %)
22 diff
(98.6 %id)
AI924340 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 2743 to 3485 741 to 1       741/760
(97 %)
39 diff
(94.9 %id)
AV724855 hypothalamus .a 2769 to 3299 1 to 522       522/525
(99 %)
8 diff
(98.5 %id)
CD367557 Alveolar Macrophage, lung .a 2771 to 3467 710 to 14   AAA   697/697
(100 %)
0 diff
(100 %id)
TI_157607961   .a 2788 to 3473 785 to 99   AAA   687/1006
(68 %)
11 diff
(99.0 %id)
BM983641 lung .a 2803 to 3478 694 to 19   AAA   676/676
(100 %)
1 diff
(99.9 %id)
BF033919 adenocarcinoma, ovary .a 2805 to 3471 1 to 657       657/658
(99 %)
15 diff
(97.8 %id)
AI683393 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2861 to 3485 623 to 2       622/623
(99 %)
0 diff
(100 %id)
AI741695 pooled .a 2894 to 3471 580 to 3       578/583
(99 %)
0 diff
(100 %id)
AW152219 brain, tumor, 5 pooled (see description) .a 2899 to 3447 546 to 1       546/546
(100 %)
30 diff
(94.6 %id)
W76569 heart .a 2910 to 3157 1 to 254   fully sequenced,   254/254
(100 %)
5 diff
(98.1 %id)
R72020 breast .a 2911 to 3251 1 to 350   fully sequenced,   350/350
(100 %)
16 diff
(95.5 %id)
AI286212 pooled .a 2926 to 3460 548 to 20       529/553
(95 %)
0 diff
(100 %id)
CD634606   .a 2936 to 3085 1 to 150       150/151
(99 %)
6 diff
(96.1 %id)
AA947584 pooled .a 2940 to 3476 541 to 5       537/541
(99 %)
0 diff
(100 %id)
CD634605   .a 2943 to 3085 143 to 1       143/150
(95 %)
0 diff
(100 %id)
AA632786 thyroid .a 2954 to 3476 1 to 531       531/531
(100 %)
23 diff
(95.7 %id)
CD634603   .a 2968 to 3083 116 to 1       116/116
(100 %)
0 diff
(100 %id)
CD634604   .a 2968 to 3085 1 to 118       118/119
(99 %)
1 diff
(99.2 %id)
BP384130 pancreatic islet .a 2974 to 3471 1 to 498     Submitted on the opposite strand 498/500
(99 %)
1 diff
(99.8 %id)
BF669984 brain, primitive neuroectoderm .a 3007 to 3475 1 to 479       479/559
(85 %)
32 diff
(94.3 %id)
AI304555 adenocarcinoma, colon .a 3025 to 3467 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI002844   .a 3030 to 3464 435 to 1       435/435
(100 %)
21 diff
(95.2 %id)
AI688261 colon .a 3034 to 3478 460 to 16   AAA   445/445
(100 %)
7 diff
(98.5 %id)
W68169 heart .a 3045 to 3473 424 to 1   fully sequenced,   424/424
(100 %)
4 diff
(99.1 %id)
BG059903 brain, glioblastoma without EGFR amplification .a 3046 to 3473 428 to 1       428/429
(99 %)
4 diff
(99.1 %id)
AI739373 colon, colon tumor, RER+ .a 3057 to 3466 411 to 1       411/414
(99 %)
6 diff
(98.6 %id)
AI739363 colon, colon tumor, RER+ .a 3058 to 3466 413 to 1       413/413
(100 %)
4 diff
(99.1 %id)
AI635801 adenocarcinoma, Pancreas .a 3076 to 3478 403 to 1       403/403
(100 %)
0 diff
(100 %id)
AI273255 adenocarcinoma, colon .a 3088 to 3483 396 to 1       396/401
(98 %)
27 diff
(93.3 %id)
T49540 placenta .a 3090 to 3459 375 to 1       375/439
(85 %)
9 diff
(98.0 %id)
T29371 placenta .a 3121 to 3471 355 to 4       352/355
(99 %)
0 diff
(100 %id)
W72000 heart .a 3127 to 3478 359 to 1   fully sequenced,   359/359
(100 %)
2 diff
(99.5 %id)
BG253092 adenocarcinoma, cell line, Liver .a 3128 to 3472 9 to 341   AAA   333/341
(97 %)
6 diff
(98.3 %id)
BF588497 colon, colon tumor, RER+ .a 3144 to 3460 324 to 8       317/324
(97 %)
0 diff
(100 %id)
R79370 placenta .a 3201 to 3449 250 to 1       250/251
(99 %)
3 diff
(98.9 %id)
R40559 whole brain .a 3203 to 3473 290 to 14   AAA   277/314
(88 %)
6 diff
(98.1 %id)
R72021 breast .a 3221 to 3463 259 to 14   fully sequenced,   246/259
(94 %)
4 diff
(98.5 %id)
AA248714   .a 3225 to 3397 172 to 1     Submitted on the opposite strand 172/172
(100 %)
1 diff
(99.5 %id)
AI740978 pooled .a 3247 to 3474 228 to 1       228/228
(100 %)
13 diff
(94.3 %id)
AI524772 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3275 to 3462 187 to 1       187/187
(100 %)
4 diff
(97.9 %id)
AI473440 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3298 to 3478 180 to 1       180/181
(99 %)
9 diff
(95.1 %id)
NM_033016.2   .b 1 to 2346 1 to 2346 exact RefSeq, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 2346/2346
(100 %)
0 diff
(100 %id)
X83705 choriocarcinoma .b 1 to 593 1 to 593   tiling clone,   593/593
(100 %)
0 diff
(100 %id)
DA708170   .c 1 to 549 8 to 556 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
TI_1540413340   .d 1 to 487 488 to 8 R8W R97T T99R R101T T103R ... tiling clone,   481/520
(92 %)
9 diff
(98.3 %id)
TI_1540413246   .e 1 to 267 270 to 3   tiling clone,   267/301
(88 %)
12 diff
(96.1 %id)
DA818373   .e 1 to 555 2 to 556 F73Y tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
CU013426 Synthetic constructs Gene PDGFB, variant not shown         This clone was ignored    
TI_149282061   Gene PDGFB, variant not shown         This clone was ignored    
X02811   Gene PDGFB, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI