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Gene PCDHG_TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
934 representative clones for gene PCDHG_ back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA392480 thalamus .a 1 to 585 9 to 593   tiling clone, capped   585/592
(98 %)
0 diff
(100 %id)
DA786162 brain .a 17 to 604 2 to 591   capped   590/593
(99 %)
3 diff
(99.5 %id)
AF152324 brain .a 177 to 4778 1 to 4602   tiling clone,   4602/4602
(100 %)
0 diff
(100 %id)
NM_018917.2   .a 177 to 4778 1 to 4602   RefSeq,   4602/4602
(100 %)
0 diff
(100 %id)
BF367119 placenta_normal .a 1077 to 1438 1 to 361       361/367
(98 %)
2 diff
(99.5 %id)
BQ345542 nervous_tumor .a 1117 to 1474 3 to 357       355/357
(99 %)
6 diff
(98.4 %id)
AW896390 nervous_normal .a 1170 to 1554 30 to 409       380/410
(92 %)
13 diff
(96.9 %id)
AW896262 nervous_normal .a 1180 to 1549 3 to 372       370/372
(99 %)
6 diff
(98.4 %id)
AA296447 brain, cerebellum .a 1844 to 2260 1 to 424       424/424
(100 %)
13 diff
(97.0 %id)
BF924366 nervous_tumor .a 2344 to 2597 309 to 57     Submitted on the opposite strand 253/314
(80 %)
0 diff
(100 %id)
AF152339 brain .b 1 to 4641 1 to 4641 exact tiling clone,   4641/4641
(100 %)
0 diff
(100 %id)
NM_018929.2   .b 1 to 4641 1 to 4641 exact RefSeq,   4641/4641
(100 %)
0 diff
(100 %id)
DA497370 brain .c 1 to 438 2 to 439   tiling clone, capped   438/438
(100 %)
0 diff
(100 %id)
DA504261 brain .c 4 to 550 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA496348 brain .c 22 to 591 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA190540 amygdala .c 53 to 635 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA801920 brain .c 102 to 597 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
AF152338 brain .c 177 to 4799 1 to 4623 exact tiling clone,   4623/4623
(100 %)
0 diff
(100 %id)
NM_018928.2   .c 177 to 4799 1 to 4623 exact RefSeq,   4623/4623
(100 %)
0 diff
(100 %id)
BQ057418 lymph, lymphoma, cell line .c 208 to 1142 1 to 952       952/1012
(94 %)
26 diff
(97.5 %id)
BQ882216 lymph, lymphoma, cell line .c 208 to 1098 1 to 897       897/912
(98 %)
13 diff
(98.6 %id)
BQ343673 nervous_tumor .c 1501 to 1827 332 to 2       331/338
(97 %)
0 diff
(100 %id)
DA785046 brain .c 1746 to 2323 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA784865 brain .c 1812 to 2390 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
AL536915 brain, fetal brain .c 2194 to 3283 1 to 1080       1080/1080
(100 %)
17 diff
(98.5 %id)
BX460985 brain, fetal brain .c 2239 to 3081 1 to 843       843/843
(100 %)
4 diff
(99.6 %id)
CD629512   .c 2250 to 2726 486 to 11       476/486
(97 %)
0 diff
(100 %id)
CD629513   .c 2250 to 2726 1 to 476       476/488
(97 %)
7 diff
(98.6 %id)
BU553487 ovary, teratocarcinoma, cell line .c 2303 to 3178 18 to 909       892/922
(96 %)
26 diff
(97.2 %id)
AL566563 brain, fetal brain .c 3629 to 4728 1121 to 30       1092/1124
(97 %)
0 diff
(100 %id)
BX460984 brain, fetal brain .c 3870 to 4725 853 to 1       853/853
(100 %)
47 diff
(94.5 %id)
AF152319 brain .d 1 to 4617 1 to 4617 exact tiling clone,   4617/4617
(100 %)
0 diff
(100 %id)
NM_018913.2   .d 1 to 4617 1 to 4617 exact RefSeq,   4617/4617
(100 %)
0 diff
(100 %id)
BQ877616 dorsal root ganglia .d 2070 to 2950 1 to 881       881/882
(99 %)
6 diff
(99.4 %id)
BF811518 colon_ins .d 2375 to 2774 1 to 398       398/401
(99 %)
19 diff
(95.3 %id)
NM_018914.2   .e 1 to 4872 1 to 4872 exact RefSeq,   4872/4872
(100 %)
0 diff
(100 %id)
BC136781 Testicle, PCR rescued clones .e 226 to 4161 1 to 3936 exact     3936/3936
(100 %)
2 diff
(100.0 %id)
BC171774 Brain, cerebellum, PCR rescued clones .e 226 to 4161 1 to 3936 exact tiling clone,   3936/3936
(100 %)
2 diff
(100.0 %id)
AF152320 brain .e 259 to 4872 1 to 4614 exact tiling clone,   4614/4614
(100 %)
0 diff
(100 %id)
TI_1971558495   .e 1139 to 2286 1156 to 10       1147/1309
(87 %)
0 diff
(100 %id)
TI_2194696000   .e 1216 to 2458 15 to 1239       1225/1259
(97 %)
6 diff
(99.6 %id)
TI_1971557035   .e 1770 to 2948 1186 to 17       1170/1270
(92 %)
23 diff
(98.2 %id)
TI_2194695998   .e 2094 to 3204 22 to 1115       1094/1238
(88 %)
30 diff
(97.6 %id)
TI_1971558369   .e 2350 to 3411 1184 to 133       1052/1252
(84 %)
23 diff
(98.2 %id)
DA502498 brain .f 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA224807 brain .f 12 to 655 2 to 645   capped   644/644
(100 %)
2 diff
(99.7 %id)
TI_44345428   .f 14 to 802 82 to 871       790/961
(82 %)
6 diff
(99.4 %id)
BI670473 brain, hypothalamus .f 17 to 802 1 to 787       787/877
(89 %)
6 diff
(99.4 %id)
BX475212   .f 20 to 316 1 to 300       300/300
(100 %)
8 diff
(97.4 %id)
BX490015   .f 23 to 364 1 to 350       350/350
(100 %)
21 diff
(94.0 %id)
DA510163 brain .f 23 to 586 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB500694 hypothalamus .f 25 to 486 1 to 462       462/462
(100 %)
1 diff
(99.8 %id)
BU172280 melanotic melanoma, skin .f 25 to 773 1 to 752       752/861
(87 %)
22 diff
(97.5 %id)
DA156640 amygdala .f 27 to 588 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA997088   .f 27 to 502 2 to 478   capped   477/477
(100 %)
1 diff
(99.8 %id)
DB064538 testis .f 27 to 603 2 to 578   capped   577/578
(99 %)
4 diff
(99.4 %id)
DA114126 cerebellum .f 28 to 586 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA185036 amygdala .f 28 to 527 2 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
AL119192 amygdala .f 31 to 286 1 to 255       255/255
(100 %)
4 diff
(98.5 %id)
DA128924 cerebellum .f 40 to 573 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
AU077347   .f 40 to 219 1 to 180       180/180
(100 %)
2 diff
(98.9 %id)
DA183147 amygdala .f 41 to 601 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA312280 hippocampus .f 41 to 565 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DA317511 hippocampus .f 41 to 599 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA417144 thalamus .f 41 to 593 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA854041 placenta .f 41 to 605 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA093809 cerebellum .f 42 to 565 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DA094985 cerebellum .f 42 to 594 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA112036 cerebellum .f 42 to 634 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DA187167 amygdala .f 42 to 565 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DA312133 hippocampus .f 44 to 582 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DA108790 cerebellum .f 53 to 527 2 to 478   capped   477/477
(100 %)
2 diff
(99.6 %id)
DA112180 cerebellum .f 53 to 625 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA245416 brain .f 53 to 616 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
CN267880 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 53 to 599 1 to 547       547/547
(100 %)
2 diff
(99.7 %id)
DA859229 placenta .f 53 to 601 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BG104313 melanotic melanoma, skin .f 55 to 546 1 to 496       496/618
(80 %)
9 diff
(98.6 %id)
BG104291 melanotic melanoma, skin .f 55 to 800 1 to 753       753/780
(96 %)
27 diff
(96.6 %id)
BG334527 melanotic melanoma, skin .f 55 to 809 1 to 753       753/915
(82 %)
26 diff
(97.2 %id)
NM_002588.2   .f 55 to 4780 1 to 4726 exact RefSeq,   4726/4726
(100 %)
0 diff
(100 %id)
BC019299 Skin, melanotic melanoma. .f 56 to 4772 1 to 4717 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4717/4717
(100 %)
0 diff
(100 %id)
DA106423 cerebellum .f 57 to 524 2 to 474   capped   473/473
(100 %)
5 diff
(99.0 %id)
BE302581 melanotic melanoma, skin .f 57 to 681 1 to 624       624/625
(99 %)
2 diff
(99.7 %id)
BG820244 anaplastic oligodendroglioma with 1p/19qloss, brain .f 57 to 776 1 to 749       749/749
(100 %)
24 diff
(96.8 %id)
DA806090 brain .f 57 to 597 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
DR001066 fetal brain .f 61 to 775 1 to 715       715/715
(100 %)
6 diff
(99.2 %id)
BC026218 Brain, anaplastic oligodendroglioma with1p/19q loss .f 66 to 4772 1 to 4707 exact available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4707/4707
(100 %)
2 diff
(100.0 %id)
CN267883 embryonic stem cells, cell lines H1, H7, andH9 .f 67 to 713 1 to 647       647/647
(100 %)
0 diff
(100 %id)
BM921052 pooled brain, lung, testis .f 67 to 1023 13 to 985       973/987
(98 %)
24 diff
(97.6 %id)
DA437513 tongue, tumor tissue .f 70 to 609 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
CX753707 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .f 71 to 800 1 to 729       729/729
(100 %)
88 diff
(88.0 %id)
AL583555 brain, fetal brain .f 82 to 1144 1 to 1050       1050/1068
(98 %)
19 diff
(98.3 %id)
CN267884 embryonic stem cells, cell lines H1, H7, andH9 .f 97 to 685 1 to 589       589/589
(100 %)
0 diff
(100 %id)
DA555556   .f 127 to 679 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BX502098 Liver .f 134 to 525 1 to 392       392/392
(100 %)
3 diff
(99.3 %id)
CN267881 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 135 to 713 1 to 579       579/579
(100 %)
0 diff
(100 %id)
TI_1948149700   .f 166 to 1033 134 to 1001       868/1410
(61 %)
32 diff
(97.8 %id)
TI_1948149701   .f 166 to 949 125 to 917       793/1480
(53 %)
26 diff
(98.3 %id)
TI_1948149959   .f 166 to 1165 135 to 1136       1002/1402
(71 %)
71 diff
(95.0 %id)
TI_1948149960   .f 166 to 1230 117 to 1163       1047/1346
(77 %)
6 diff
(99.6 %id)
TI_1948149995   .f 166 to 888 133 to 857       725/1440
(50 %)
14 diff
(99.1 %id)
TI_1948149996   .f 166 to 843 123 to 801       679/1383
(49 %)
23 diff
(98.4 %id)
TI_1948150253   .f 166 to 1036 133 to 996       864/1412
(61 %)
45 diff
(96.9 %id)
TI_1948150254   .f 166 to 1053 121 to 1015       895/1416
(63 %)
26 diff
(98.2 %id)
TI_1948150293   .f 166 to 1084 129 to 1052       924/1399
(66 %)
40 diff
(97.2 %id)
TI_1948150294   .f 166 to 975 121 to 930       810/1442
(56 %)
29 diff
(98.0 %id)
TI_1948150573   .f 166 to 1017 132 to 995       864/1462
(59 %)
38 diff
(97.5 %id)
TI_1948150574   .f 166 to 1101 123 to 1053       931/1392
(66 %)
6 diff
(99.6 %id)
TI_1948150615   .f 166 to 920 137 to 896       760/1429
(53 %)
37 diff
(97.5 %id)
TI_1948150616   .f 166 to 793 121 to 750       630/1426
(44 %)
30 diff
(97.9 %id)
AF152337 brain .f 170 to 4780 1 to 4611 exact     4611/4611
(100 %)
0 diff
(100 %id)
CV023039 mixed .f 170 to 702 1 to 535       535/535
(100 %)
17 diff
(96.9 %id)
CV027676 mixed .f 170 to 804 1 to 635       635/635
(100 %)
0 diff
(100 %id)
AI363503 anaplastic oligodendroglioma, brain .f 194 to 674 481 to 1       481/481
(100 %)
0 diff
(100 %id)
BE168124 head_neck .f 321 to 869 1 to 547       547/547
(100 %)
3 diff
(99.5 %id)
BF918694 nervous_tumor .f 368 to 751 58 to 444       387/444
(87 %)
6 diff
(98.7 %id)
BG914067 anaplastic oligodendroglioma with 1p/19qloss, brain .f 415 to 1135 32 to 753       722/930
(77 %)
49 diff
(94.8 %id)
BE159027 head_neck .f 453 to 1032 592 to 14     Submitted on the opposite strand 579/592
(97 %)
0 diff
(100 %id)
BF530615 anaplastic oligodendroglioma with 1p/19qloss, brain .f 581 to 1108 20 to 548       529/548
(96 %)
6 diff
(99.0 %id)
AL519838 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .f 604 to 1719 1 to 1108       1108/1108
(100 %)
14 diff
(98.8 %id)
BF927073 nervous_tumor .f 649 to 1255 1 to 605       605/605
(100 %)
5 diff
(99.2 %id)
BM016878 astrocytoma grade IV, cell line, brain .f 665 to 1218 1 to 553       553/665
(83 %)
8 diff
(98.8 %id)
TI_59387116   .f 666 to 1218 62 to 613       552/664
(83 %)
8 diff
(98.8 %id)
BM908981 astrocytoma grade IV, cell line, brain .f 668 to 1356 1 to 688       688/1127
(61 %)
33 diff
(97.1 %id)
DA313626 hippocampus .f 673 to 1204 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
BI757603 brain .f 681 to 1604 1 to 924       924/945
(97 %)
38 diff
(96.0 %id)
TI_57220481   .f 681 to 1604 27 to 950       924/971
(95 %)
38 diff
(96.1 %id)
CN267885 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 698 to 1313 1 to 616       616/616
(100 %)
3 diff
(99.6 %id)
DA521714 brain .f 706 to 1267 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA556723   .f 706 to 1269 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
BF922844 nervous_tumor .f 740 to 1046 17 to 330       314/330
(95 %)
6 diff
(98.2 %id)
CN267882 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 756 to 1283 1 to 529       529/529
(100 %)
2 diff
(99.7 %id)
TI_57240712   .f 773 to 1378 1 to 627       627/1078
(58 %)
31 diff
(97.2 %id)
BF529515 anaplastic oligodendroglioma with 1p/19qloss, brain .f 778 to 1577 11 to 802       792/911
(86 %)
21 diff
(97.7 %id)
CA395878 eye, RPE/choroid .f 810 to 1376 1 to 567       567/567
(100 %)
0 diff
(100 %id)
CA397152 eye, RPE/choroid .f 810 to 1368 1 to 559       559/559
(100 %)
0 diff
(100 %id)
BF528904 anaplastic oligodendroglioma with 1p/19qloss, brain .f 904 to 1650 1 to 756       756/855
(88 %)
16 diff
(98.2 %id)
DB083494 testis .f 972 to 1511 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB083555 testis .f 972 to 1529 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BF923739 nervous_tumor .f 973 to 1461 496 to 10     Submitted on the opposite strand 487/496
(98 %)
0 diff
(100 %id)
BG913335 anaplastic oligodendroglioma with 1p/19qloss, brain .f 975 to 1487 1 to 535       535/967
(55 %)
30 diff
(96.9 %id)
AL535320 brain, fetal brain .f 1278 to 2360 1 to 1080       1080/1080
(100 %)
7 diff
(99.4 %id)
R88939 brain .f 1718 to 2106 1 to 396       396/396
(100 %)
8 diff
(98.0 %id)
CD615131   .f 1748 to 2531 1 to 779       779/794
(98 %)
15 diff
(98.2 %id)
CD615132   .f 1784 to 2537 765 to 13       753/765
(98 %)
0 diff
(100 %id)
BE019025 Kidney, renal cell adenocarcinoma .f 1801 to 2285 1 to 485       485/485
(100 %)
0 diff
(100 %id)
BE019030 Kidney, renal cell adenocarcinoma .f 1801 to 2224 1 to 424       424/424
(100 %)
0 diff
(100 %id)
BF966413 brain, hippocampus .f 1917 to 2600 1 to 685       685/834
(82 %)
20 diff
(97.7 %id)
TI_1948150295   .f 1994 to 2973 1106 to 128       979/1305
(75 %)
64 diff
(95.1 %id)
BE389085 endometrium, adenocarcinoma cell line, uterus .f 1999 to 2482 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
BE392217 endometrium, adenocarcinoma cell line, uterus .f 1999 to 2481 1 to 483       483/485
(99 %)
1 diff
(99.8 %id)
DB728035 hypothalamus .f 2022 to 2738 1 to 715       715/717
(99 %)
10 diff
(98.7 %id)
DB502322 hypothalamus .f 2022 to 2488 1 to 467       467/467
(100 %)
1 diff
(99.8 %id)
CF125481 Chondrosarcoma Lung Metastasis cell lines, lung .f 2033 to 2735 1 to 699       699/699
(100 %)
4 diff
(99.5 %id)
TI_154187135   .f 2033 to 2747 55 to 764       710/720
(98 %)
9 diff
(98.8 %id)
TI_1948150576   .f 2039 to 2973 1058 to 129       930/1306
(71 %)
6 diff
(99.6 %id)
TI_1948150296   .f 2042 to 2973 1064 to 129       936/1367
(68 %)
45 diff
(96.8 %id)
TI_1948150255   .f 2052 to 2973 1064 to 128       937/1386
(67 %)
39 diff
(97.2 %id)
TI_1948149702   .f 2068 to 2973 1044 to 128       917/1331
(68 %)
40 diff
(97.0 %id)
H45903 brain .f 2101 to 2482 1 to 390       390/392
(99 %)
12 diff
(97.0 %id)
TI_1948149961   .f 2133 to 2973 971 to 129       843/1325
(63 %)
10 diff
(99.3 %id)
TI_1948150575   .f 2133 to 2973 979 to 129       851/1401
(60 %)
17 diff
(98.8 %id)
BG818157 anaplastic oligodendroglioma with 1p/19qloss, brain .f 2135 to 2747 44 to 655       612/687
(89 %)
23 diff
(96.7 %id)
TI_1948149962   .f 2138 to 2973 969 to 138       832/1342
(61 %)
22 diff
(98.4 %id)
TI_1948150256   .f 2153 to 2973 958 to 131       828/1326
(62 %)
29 diff
(97.9 %id)
TI_1948149997   .f 2164 to 2973 937 to 126       812/1299
(62 %)
6 diff
(99.6 %id)
BG912010 anaplastic oligodendroglioma with 1p/19qloss, brain .f 2190 to 2867 1 to 678       678/679
(99 %)
3 diff
(99.6 %id)
TI_1948149703   .f 2199 to 2973 906 to 124       783/1406
(55 %)
32 diff
(97.8 %id)
BE171905 head_neck .f 2215 to 2595 28 to 406       379/414
(91 %)
3 diff
(99.3 %id)
TI_1948150618   .f 2220 to 2973 892 to 130       763/1419
(53 %)
6 diff
(99.6 %id)
CN404933 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 2241 to 3005 1 to 765       765/767
(99 %)
5 diff
(99.4 %id)
BG829108 muscle, rhabdomyosarcoma .f 2256 to 3002 1 to 764   AAA   766/1147
(66 %)
49 diff
(95.8 %id)
BG827530 muscle, rhabdomyosarcoma .f 2257 to 3013 1 to 751       751/752
(99 %)
11 diff
(98.6 %id)
BI115003 muscle, rhabdomyosarcoma .f 2257 to 2870 1 to 613       613/613
(100 %)
4 diff
(99.4 %id)
TI_1948150617   .f 2272 to 2973 838 to 125       714/1389
(51 %)
27 diff
(98.1 %id)
AJ713068 bone marrow .f 2398 to 2599 19 to 219       201/228
(88 %)
2 diff
(99.2 %id)
BQ345547 nervous_tumor .f 2469 to 2822 372 to 16       357/420
(85 %)
7 diff
(98.4 %id)
R89616 brain .f 2476 to 2829 356 to 1       356/359
(99 %)
10 diff
(97.3 %id)
R89615 brain .f 2526 to 2860 336 to 1       336/336
(100 %)
5 diff
(98.6 %id)
AL535319 brain, fetal brain .f 3599 to 4756 1151 to 1       1151/1151
(100 %)
24 diff
(98.0 %id)
AL519837 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .f 3645 to 4716 1072 to 8       1065/1114
(95 %)
0 diff
(100 %id)
AL534853 brain, fetal brain .f 3687 to 4763 1067 to 1       1067/1124
(94 %)
21 diff
(98.2 %id)
BF966542 brain, hippocampus .f 3992 to 4701 733 to 22       712/1019
(69 %)
0 diff
(100 %id)
BE206705 Kidney, renal cell adenocarcinoma .f 4296 to 4776 481 to 1       481/481
(100 %)
2 diff
(99.6 %id)
BE208421 Kidney, renal cell adenocarcinoma .f 4339 to 4776 438 to 1       438/438
(100 %)
1 diff
(99.8 %id)
BE207447 melanotic melanoma, skin .f 4439 to 4776 340 to 3       338/340
(99 %)
0 diff
(100 %id)
AF152329 brain .g 1 to 4605 1 to 4605 exact tiling clone,   4605/4605
(100 %)
0 diff
(100 %id)
NM_018921.2   .g 1 to 4605 1 to 4605 exact RefSeq,   4605/4605
(100 %)
0 diff
(100 %id)
NM_032088.1   .h 1 to 5503 1 to 5503 exact RefSeq,   5503/5503
(100 %)
0 diff
(100 %id)
AF152328 brain .h 899 to 5503 1 to 4605 exact tiling clone,   4605/4605
(100 %)
0 diff
(100 %id)
DA107375 cerebellum .h 1452 to 1995 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA314472 hippocampus .i 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
DA786510 brain .i 1 to 520 2 to 523   capped   522/522
(100 %)
3 diff
(99.5 %id)
AL536793 brain, fetal brain .i 19 to 928 38 to 942       905/942
(96 %)
6 diff
(99.4 %id)
BF960753 nervous_normal .i 24 to 256 7 to 241       235/272
(86 %)
7 diff
(97.5 %id)
NM_018915.2   .i 27 to 4816 1 to 4790 exact RefSeq,   4790/4790
(100 %)
0 diff
(100 %id)
DA389784 thalamus .i 28 to 609 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA506766 brain .i 76 to 636 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
TI_891530141   .i 161 to 1227 51 to 1109     Submitted on the opposite strand 1059/1234
(85 %)
13 diff
(99.0 %id)
TI_1241113727   .i 161 to 1325 51 to 1199       1149/1258
(91 %)
29 diff
(97.7 %id)
DR006120 Prostate .i 165 to 242 1 to 78       78/79
(98 %)
3 diff
(96.3 %id)
DA194623 amygdala .i 181 to 789 2 to 607   capped   606/606
(100 %)
3 diff
(99.6 %id)
AF152322 brain .i 212 to 4816 1 to 4605 exact tiling clone,   4605/4605
(100 %)
0 diff
(100 %id)
DA109363 cerebellum .i 666 to 1057 2 to 393   capped   392/392
(100 %)
0 diff
(100 %id)
TI_891527114   .i 685 to 1814 1 to 1129       1129/1212
(93 %)
30 diff
(97.6 %id)
AW452562   .i 1075 to 1506 473 to 42   AAA   432/456
(94 %)
0 diff
(100 %id)
CX873173 embryonic stem .i 2443 to 3249 1 to 806       806/806
(100 %)
2 diff
(99.8 %id)
AL566497 brain, fetal brain .i 3824 to 4774 951 to 2       950/951
(99 %)
0 diff
(100 %id)
AB209178 brain .j 1 to 4774 1 to 4774 T628M tiling clone,   4774/4774
(100 %)
2 diff
(100.0 %id)
BC146651 Donated clones,Novartis FGA collection .j 12 to 4767 1 to 4756 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4756/4756
(100 %)
0 diff
(100 %id)
BG899247 cartilage .j 47 to 461 88 to 502       415/431
(96 %)
6 diff
(98.7 %id)
AF152326 brain .j 171 to 4775 1 to 4605 exact     4605/4605
(100 %)
0 diff
(100 %id)
NM_018919.2   .j 171 to 4775 1 to 4605 exact RefSeq,   4605/4605
(100 %)
0 diff
(100 %id)
BC109240 PCR rescued clones .j 983 to 1772 13 to 802       790/807
(97 %)
2 diff
(99.8 %id)
BI005764 head_normal .j 1034 to 1291 268 to 11       258/268
(96 %)
0 diff
(100 %id)
AL119917 amygdala .j 1981 to 2402 1 to 422       422/424
(99 %)
4 diff
(99.1 %id)
BQ716279 sympathetic trunk .j 2473 to 3225 1 to 754       754/850
(88 %)
5 diff
(99.5 %id)
DB193753 ovary, tumor tissue .k 1 to 565 2 to 567   tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
DA287863 corpus callosum .k 57 to 525 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DA417336 thalamus .k 59 to 618 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB082370 testis .k 60 to 634 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB234055 trachea .k 60 to 628 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BX642492   .k 84 to 689 1 to 606       606/606
(100 %)
2 diff
(99.7 %id)
AF152327 brain .k 217 to 4821 1 to 4605 exact tiling clone,   4605/4605
(100 %)
0 diff
(100 %id)
NM_018920.2   .k 217 to 4821 1 to 4605 exact RefSeq,   4605/4605
(100 %)
0 diff
(100 %id)
AB208958 brain .k 326 to 4813 1 to 4485       4485/4485
(100 %)
4 diff
(100.0 %id)
DB061029 testis .k 475 to 984 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
AA558554 Prostate, prostatic intraepithelial neoplasia - highgrade .k 619 to 879 1 to 261       261/261
(100 %)
1 diff
(99.7 %id)
DA875479 Prostate .k 1097 to 1662 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BI033468 nervous_normal .k 1420 to 1918 512 to 15       498/512
(97 %)
0 diff
(100 %id)
BM805634 brain, hippocampus .k 1754 to 2416 104 to 777       674/1204
(55 %)
25 diff
(98.0 %id)
DA094591 cerebellum .l 1 to 552 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA338388 hippocampus .l 1 to 599 2 to 599   tiling clone, capped   598/598
(100 %)
1 diff
(99.9 %id)
DA249548 brain .l 3 to 585 2 to 586   capped   585/585
(100 %)
3 diff
(99.5 %id)
DA272423 caudate nucleus .l 17 to 579 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA032995   .l 23 to 602 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA188807 amygdala .l 33 to 583 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
AB208927 brain .l 39 to 4801 1 to 4763 P79S tiling clone,   4763/4763
(100 %)
1 diff
(100.0 %id)
AF152323 brain .l 205 to 4809 1 to 4605 G29S V646I T661I tiling clone,   4605/4605
(100 %)
3 diff
(100.0 %id)
BC115408 PCR rescued clones .l 205 to 2272 1 to 2069       2069/2082
(99 %)
7 diff
(99.7 %id)
BC115409 PCR rescued clones .l 205 to 2272 1 to 2069       2069/2082
(99 %)
9 diff
(99.6 %id)
NM_018916.3   .l 205 to 4809 1 to 4605 exact RefSeq,   4605/4605
(100 %)
0 diff
(100 %id)
BC133708 PCR rescued clones .l 207 to 2272 1 to 2067       2067/2080
(99 %)
8 diff
(99.7 %id)
TI_45379219   .l 1549 to 2493 21 to 971       951/990
(96 %)
6 diff
(99.4 %id)
BI488619 brain .l 1557 to 2493 1 to 943       943/962
(98 %)
38 diff
(96.1 %id)
DN994751 brain, whole brain .l 2317 to 2976 9 to 668       660/668
(98 %)
6 diff
(99.2 %id)
NM_003735.2   .m 1 to 4774 1 to 4774 exact RefSeq,   4774/4774
(100 %)
0 diff
(100 %id)
DB160301 thymus .m 22 to 602 2 to 582   tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
AB011160 brain .m 28 to 4774 1 to 4747 exact available from KIAA,   4747/4747
(100 %)
1 diff
(100.0 %id)
DN999496   .m 50 to 427 1 to 378       378/378
(100 %)
3 diff
(99.3 %id)
AF152321 brain .m 170 to 4774 1 to 4605 exact tiling clone,   4605/4605
(100 %)
0 diff
(100 %id)
BG990628 head_neck .m 922 to 1430 13 to 521       509/521
(97 %)
10 diff
(98.1 %id)
AB000897   .m 1100 to 1501 1 to 402       402/402
(100 %)
2 diff
(99.6 %id)
AL119463 amygdala .m 1364 to 1971 1 to 610       610/680
(89 %)
8 diff
(98.9 %id)
U83567 brain .m 1578 to 1873 305 to 1       305/306
(99 %)
12 diff
(96.1 %id)
AW407884 lymph .m 2369 to 2763 1 to 395       395/395
(100 %)
5 diff
(98.8 %id)
TI_154146899   .m 2376 to 2789 87 to 500       414/414
(100 %)
3 diff
(99.3 %id)
AF152331 brain .n 1 to 4602 1 to 4602 exact tiling clone,   4602/4602
(100 %)
0 diff
(100 %id)
NM_018923.2   .n 1 to 4602 1 to 4602 exact RefSeq,   4602/4602
(100 %)
0 diff
(100 %id)
AL120565 amygdala .n 905 to 1468 1 to 565     Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 565/565
(100 %)
1 diff
(99.9 %id)
AL120566 amygdala .n 4164 to 4566 421 to 19   AAA Possibly primed on the genome, locally A rich (14/17 A in genome downstream of last aligned base) 403/403
(100 %)
1 diff
(99.8 %id)
DA319714 hippocampus .o 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DR000213 fetal brain .o 33 to 620 1 to 592       592/592
(100 %)
9 diff
(98.5 %id)
DA505757 brain .o 49 to 623 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
TI_1243018365   .o 66 to 1124 43 to 1091       1049/1173
(89 %)
16 diff
(98.7 %id)
DA799233 brain .o 70 to 594 2 to 526   capped   525/525
(100 %)
5 diff
(99.1 %id)
DA502245 brain .o 75 to 566 2 to 493   capped   492/492
(100 %)
0 diff
(100 %id)
AF152325 brain .o 169 to 4770 1 to 4602 exact tiling clone,   4602/4602
(100 %)
0 diff
(100 %id)
NM_018918.2   .o 169 to 4770 1 to 4602 exact RefSeq,   4602/4602
(100 %)
0 diff
(100 %id)
TI_1241112609   .o 453 to 1662 1203 to 3       1201/1265
(94 %)
0 diff
(100 %id)
TI_1243018769   .o 692 to 1871 15 to 1192       1178/1241
(94 %)
23 diff
(98.2 %id)
D88796   .o 1098 to 1503 1 to 406       406/406
(100 %)
2 diff
(99.6 %id)
TI_1241112571   .o 1179 to 2456 1264 to 9       1256/1287
(97 %)
0 diff
(100 %id)
TI_1243018765   .o 1381 to 2597 15 to 1225       1211/1260
(96 %)
29 diff
(97.7 %id)
AF152318 brain .p 1 to 4602 1 to 4602 exact tiling clone,   4602/4602
(100 %)
0 diff
(100 %id)
NM_018912.2   .p 1 to 4602 1 to 4602 exact RefSeq,   4602/4602
(100 %)
0 diff
(100 %id)
TI_1948098177   .p 2418 to 2795 503 to 126       378/1400
(27 %)
1 diff
(100.0 %id)
TI_2194697718   .p 2419 to 3194 797 to 21       777/1129
(68 %)
26 diff
(97.7 %id)
AL134674 brain .p 2433 to 3009 1 to 577       577/581
(99 %)
1 diff
(99.9 %id)
BU856175 ovary, teratocarcinoma, cell line .p 2437 to 3201 45 to 812       768/941
(81 %)
16 diff
(98.3 %id)
BQ055812 lymph, lymphoma, cell line .p 2504 to 3454 1 to 962       962/1033
(93 %)
15 diff
(98.6 %id)
BQ058518 lymph, lymphoma, cell line .p 2504 to 3390 1 to 897       897/1038
(86 %)
22 diff
(97.9 %id)
BQ065878 lymph, lymphoma, cell line .p 2504 to 3406 1 to 914       914/1037
(88 %)
20 diff
(98.1 %id)
DA368544 subthalamic nucleus .p 2515 to 3079 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BM809961 astrocytoma grade IV, cell line, brain .p 2583 to 3555 21 to 992       972/1139
(85 %)
14 diff
(98.8 %id)
CD617415   .p 2586 to 3218 640 to 8       633/654
(96 %)
0 diff
(100 %id)
BU174905 epidermoid carcinoma, cell line, salivary gland .p 2614 to 3424 1 to 816       816/866
(94 %)
9 diff
(99.0 %id)
TI_2194697721   .p 2640 to 3774 1149 to 9       1141/1282
(89 %)
0 diff
(100 %id)
BQ642888 lymph, lymphoma, cell line .p 2659 to 3579 1 to 931       931/932
(99 %)
17 diff
(98.2 %id)
BE259884 brain, neuroblastoma .p 2682 to 3352 1 to 670       670/721
(92 %)
13 diff
(98.2 %id)
BG820308 anaplastic oligodendroglioma with 1p/19qloss, brain .p 2683 to 3573 1 to 880       880/970
(90 %)
19 diff
(98.1 %id)
BM740814 Ascites, stomach .p 2690 to 3406 1 to 717       717/717
(100 %)
3 diff
(99.6 %id)
BM738531 Ascites, stomach .p 2690 to 3318 1 to 631       631/631
(100 %)
6 diff
(99.1 %id)
BM757343 Ascites, stomach .p 2690 to 3298 1 to 610       610/610
(100 %)
1 diff
(99.9 %id)
BM742071 Ascites, stomach .p 2690 to 3216 1 to 527       527/527
(100 %)
0 diff
(100 %id)
BM738372 Ascites, stomach .p 2702 to 3250 1 to 549       549/549
(100 %)
0 diff
(100 %id)
BG819251 anaplastic oligodendroglioma with 1p/19qloss, brain .p 2737 to 3459 1 to 721       721/721
(100 %)
5 diff
(99.4 %id)
CX866392 embryonic stem .p 2737 to 3524 1 to 788       788/788
(100 %)
2 diff
(99.8 %id)
BU185011 melanotic melanoma, cell line, skin .p 2760 to 3594 1 to 834       834/846
(98 %)
10 diff
(98.9 %id)
TI_57230918   .p 2766 to 3514 50 to 795       746/754
(98 %)
9 diff
(98.9 %id)
BI870440 adenocarcinoma, cell line, Liver .p 2767 to 3514 1 to 745       745/753
(98 %)
9 diff
(98.9 %id)
CR606761 Neuroblastoma Cot 25-normalized .p 2818 to 4559 1 to 1742       1742/1742
(100 %)
0 diff
(100 %id)
BQ899198 melanotic melanoma, cell line, skin .p 2824 to 3650 1 to 840       840/949
(88 %)
22 diff
(97.7 %id)
BF345814 anaplastic oligodendroglioma with 1p/19qloss, brain .p 2831 to 3577 1 to 743       743/1091
(68 %)
14 diff
(98.8 %id)
BF924801 nervous_tumor .p 2854 to 3106 253 to 1     Submitted on the opposite strand 253/253
(100 %)
0 diff
(100 %id)
BU179007 leiomyosarcoma, uterus .p 2873 to 3610 12 to 751       740/922
(80 %)
7 diff
(99.3 %id)
DR156791 human embryonic stem cells differentiated toan early endodermal cell type .p 2873 to 3595 1 to 723       723/723
(100 %)
1 diff
(99.9 %id)
BM547066 brain, hippocampus .p 2978 to 3875 11 to 919       909/1113
(81 %)
51 diff
(95.5 %id)
CR614457 Neuroblastoma Cot 25-normalized .p 2989 to 4559 1 to 1571       1571/1571
(100 %)
0 diff
(100 %id)
BG912686 anaplastic oligodendroglioma with 1p/19qloss, brain .p 2991 to 3733 1 to 748       748/749
(99 %)
11 diff
(98.6 %id)
BY796029 eye .p 3008 to 3957 1 to 950       950/950
(100 %)
0 diff
(100 %id)
TI_2194697698   .p 3029 to 3765 749 to 13       737/1259
(58 %)
0 diff
(100 %id)
BU196229 melanotic melanoma, cell line, skin .p 3039 to 3854 1 to 824       824/891
(92 %)
28 diff
(96.9 %id)
TI_2194694695   .p 3041 to 3892 922 to 69       854/927
(92 %)
0 diff
(100 %id)
CR611255 placenta .p 3048 to 4561 1 to 1514       1514/1514
(100 %)
0 diff
(100 %id)
CR612895 placenta .p 3048 to 4548 1 to 1501       1501/1501
(100 %)
0 diff
(100 %id)
AL541160 placenta .p 3048 to 3937 1 to 879   fully sequenced,   879/879
(100 %)
7 diff
(99.3 %id)
TI_1971557043   .p 3084 to 3767 698 to 14       685/1065
(64 %)
0 diff
(100 %id)
R85050 brain .p 3087 to 3459 1 to 373       373/373
(100 %)
0 diff
(100 %id)
CN404935 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .p 3098 to 3627 1 to 530       530/530
(100 %)
0 diff
(100 %id)
BF528600 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3101 to 3889 1 to 770       770/984
(78 %)
41 diff
(95.9 %id)
TI_2194695997   .p 3107 to 3892 924 to 143       782/1306
(59 %)
0 diff
(100 %id)
TI_2194699491   .p 3115 to 3892 848 to 67       782/1354
(57 %)
0 diff
(100 %id)
BF340042 brain, glioblastoma with EGFR amplification .p 3135 to 3875 1 to 735       735/802
(91 %)
19 diff
(97.7 %id)
TI_1971554285   .p 3150 to 3897 816 to 69       748/816
(91 %)
0 diff
(100 %id)
BF513666   .p 3152 to 3530 392 to 14   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 379/379
(100 %)
0 diff
(100 %id)
CF243141 Brain glioblastoma .p 3163 to 4002 1 to 846       846/850
(99 %)
9 diff
(99.0 %id)
TI_2194697667   .p 3171 to 3709 616 to 79       538/645
(83 %)
0 diff
(100 %id)
BG820547 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3171 to 3964 1 to 796       796/800
(99 %)
19 diff
(97.7 %id)
CD108996 brain, Pituitary .p 3176 to 4013 1 to 844       844/844
(100 %)
10 diff
(98.9 %id)
CR604924 Neuroblastoma Cot 25-normalized .p 3195 to 4574 1 to 1380       1380/1380
(100 %)
0 diff
(100 %id)
AL528258 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .p 3195 to 4176 1 to 969   fully sequenced,   969/969
(100 %)
10 diff
(99.0 %id)
BX464876 placenta .p 3196 to 4017 1 to 821       821/821
(100 %)
15 diff
(98.2 %id)
AL514756 neuroblastoma, placenta .p 3196 to 3939 1 to 742   fully sequenced,   742/742
(100 %)
3 diff
(99.6 %id)
CR614433 neuroblastoma .p 3196 to 4598 1 to 1403       1403/1403
(100 %)
0 diff
(100 %id)
AL048335 uterus .p 3215 to 3869 1 to 661       661/661
(100 %)
6 diff
(99.1 %id)
BF342339 brain, glioblastoma with EGFR amplification .p 3237 to 3991 1 to 746       746/834
(89 %)
16 diff
(98.1 %id)
BF525790 brain, glioblastoma with EGFR amplification .p 3237 to 4036 1 to 786       786/877
(89 %)
24 diff
(97.3 %id)
CX869957 embryonic stem .p 3237 to 3611 1 to 375       375/375
(100 %)
0 diff
(100 %id)
BU162901 ductal carcinoma, cell line, Pancreas .p 3243 to 4252 1 to 1026       1026/1028
(99 %)
36 diff
(96.5 %id)
BQ689381 ductal carcinoma, cell line, Pancreas .p 3243 to 4095 1 to 859       859/862
(99 %)
28 diff
(96.8 %id)
BX115351 liver and spleen .p 3244 to 3955 1 to 713       713/713
(100 %)
2 diff
(99.8 %id)
BQ689169 ductal carcinoma, cell line, Pancreas .p 3244 to 4089 1 to 857       857/892
(96 %)
25 diff
(97.2 %id)
BF339706 brain, glioblastoma with EGFR amplification .p 3250 to 3893 1 to 641       641/641
(100 %)
4 diff
(99.4 %id)
BG740932 skin .p 3262 to 4100 1 to 838       838/838
(100 %)
4 diff
(99.6 %id)
BQ230078 embryonal carcinoma, cell line, testis .p 3280 to 4027 1 to 751       751/858
(87 %)
13 diff
(98.5 %id)
BM821512 stomach .p 3293 to 3714 1 to 422       422/422
(100 %)
0 diff
(100 %id)
BQ232006 large cell carcinoma, lung .p 3306 to 4054 1 to 755       755/954
(79 %)
27 diff
(97.2 %id)
ES313117 beard hair, skin .p 3309 to 3445 1 to 137       137/137
(100 %)
0 diff
(100 %id)
AA682924 schizophrenic brain S-11 frontal lobe .p 3317 to 3725 1 to 409     Submitted on the opposite strand 409/409
(100 %)
0 diff
(100 %id)
CD245736 White Matter .p 3323 to 4045 1 to 725       725/858
(84 %)
8 diff
(99.1 %id)
BG820032 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3351 to 3819 1 to 469       469/469
(100 %)
0 diff
(100 %id)
CA390638 eye, RPE/choroid .p 3365 to 3888 1 to 524       524/524
(100 %)
0 diff
(100 %id)
CA388789 eye, RPE/choroid .p 3374 to 3812 1 to 439       439/439
(100 %)
0 diff
(100 %id)
BQ674321 epidermoid carcinoma, cell line, salivary gland .p 3444 to 4300 1 to 867       867/933
(92 %)
26 diff
(97.3 %id)
BG912888 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3471 to 4131 1 to 661       661/662
(99 %)
2 diff
(99.7 %id)
W76488 heart .p 3486 to 3894 1 to 410       410/410
(100 %)
3 diff
(99.3 %id)
CA391045 eye, RPE/choroid .p 3512 to 4063 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
BF526582 brain, glioblastoma with EGFR amplification .p 3524 to 4302 1 to 771       771/857
(89 %)
25 diff
(97.1 %id)
BE273804 Kidney, renal cell adenocarcinoma .p 3528 to 4239 1 to 709       709/761
(93 %)
22 diff
(97.2 %id)
BG913359 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3531 to 4336 1 to 811       811/989
(82 %)
27 diff
(97.3 %id)
CN404934 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .p 3557 to 4112 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
BG819564 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3582 to 4408 1 to 820       820/824
(99 %)
18 diff
(97.9 %id)
BG393935 embryonal carcinoma, cell line, testis .p 3583 to 4407 1 to 824       824/883
(93 %)
23 diff
(97.4 %id)
CN404929 embryonic stem cells, DMSO-treated H9 cellline .p 3591 to 3800 1 to 210       210/210
(100 %)
0 diff
(100 %id)
BF340502 brain, glioblastoma with EGFR amplification .p 3610 to 4346 1 to 742       742/908
(81 %)
17 diff
(98.2 %id)
BF313682 brain, neuroblastoma .p 3613 to 4215 1 to 602       602/602
(100 %)
2 diff
(99.7 %id)
BI196955 brain, neuroblastoma .p 3613 to 4301 1 to 681       681/681
(100 %)
9 diff
(98.7 %id)
BI197622 brain, neuroblastoma .p 3613 to 4400 1 to 781       781/819
(95 %)
16 diff
(98.1 %id)
BG257694 embryonal carcinoma, cell line, testis .p 3617 to 4428 1 to 806       806/920
(87 %)
19 diff
(98.0 %id)
BI554041 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3629 to 4539 1 to 912       912/974
(93 %)
34 diff
(96.6 %id)
TI_44385037   .p 3629 to 4539 55 to 966       912/974
(93 %)
34 diff
(96.6 %id)
BE562924 endometrium, adenocarcinoma cell line, uterus .p 3632 to 4420 1 to 787       787/798
(98 %)
27 diff
(96.7 %id)
BF528689 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3633 to 4337 1 to 698       698/698
(100 %)
12 diff
(98.3 %id)
AA331816 Embryo, 8 weeks .p 3637 to 3911 1 to 275       275/275
(100 %)
0 diff
(100 %id)
BG681725 skin, squamous cell carcinoma .p 3645 to 4462 1 to 816       816/867
(94 %)
18 diff
(98.0 %id)
BF530344 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3653 to 4412 1 to 748       748/877
(85 %)
25 diff
(97.2 %id)
CF455989 peripheral nervous system .p 3666 to 4384 27 to 745       719/745
(96 %)
6 diff
(99.2 %id)
BM705178 eye, RPE and Choroid .p 3677 to 4136 1 to 460   fully sequenced,   460/460
(100 %)
1 diff
(99.8 %id)
BG818446 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3691 to 4503 1 to 815       815/816
(99 %)
20 diff
(97.6 %id)
CF131118 Chondrosarcoma Lung Metastasis cell lines, lung .p 3704 to 4482 1 to 779       779/779
(100 %)
3 diff
(99.7 %id)
TI_154194566   .p 3704 to 4604 51 to 943       893/1036
(86 %)
20 diff
(98.1 %id)
F11326 brain, total brain .p 3705 to 3996 1 to 291       291/291
(100 %)
1 diff
(99.7 %id)
BQ717482 sympathetic trunk .p 3755 to 4414 1 to 660       660/907
(72 %)
5 diff
(99.5 %id)
CD617419   .p 3756 to 4058 1 to 303       303/303
(100 %)
0 diff
(100 %id)
TI_149294832   .p 3784 to 4594 859 to 58   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 802/941
(85 %)
14 diff
(98.6 %id)
BF529466 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3789 to 4597 1 to 799       799/840
(95 %)
20 diff
(97.7 %id)
TI_149297662   .p 3806 to 4594 863 to 82   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 782/949
(82 %)
10 diff
(99.0 %id)
TI_149313773   .p 3806 to 4602 873 to 90   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 784/969
(80 %)
18 diff
(98.2 %id)
TI_149287622   .p 3815 to 4594 816 to 57   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 760/1070
(71 %)
22 diff
(98.0 %id)
BF924785 nervous_tumor .p 3821 to 4093 1 to 273       273/273
(100 %)
0 diff
(100 %id)
CV800724 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .p 3825 to 4523 1 to 694       694/858
(80 %)
9 diff
(99.0 %id)
BQ004128 Chondrosarcoma, Left Pelvis .p 3833 to 4594 763 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 745/747
(99 %)
20 diff
(97.4 %id)
TI_149313086   .p 3833 to 4594 835 to 86   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 750/917
(81 %)
17 diff
(98.2 %id)
TI_154115524   .p 3833 to 4594 838 to 86   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 753/911
(82 %)
11 diff
(98.8 %id)
TI_227715477   .p 3833 to 4594 836 to 85   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 752/972
(77 %)
15 diff
(98.5 %id)
CB250580 Human Lung Epithelial cells, lung .p 3833 to 4594 774 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 756/787
(96 %)
8 diff
(99.0 %id)
CA442860 Fibrosarcoma .p 3833 to 4594 772 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 754/788
(95 %)
12 diff
(98.5 %id)
CA449241 Chondrosarcoma, Left Pubic Bone .p 3833 to 4594 771 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 753/787
(95 %)
11 diff
(98.7 %id)
TI_151706119   .p 3833 to 4594 830 to 81   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 750/903
(83 %)
12 diff
(98.7 %id)
TI_154025410   .p 3836 to 4594 831 to 87   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 745/791
(94 %)
18 diff
(97.8 %id)
BM694643 eye, RPE and Choroid .p 3842 to 4136 1 to 295   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 295/295
(100 %)
0 diff
(100 %id)
BQ681117 melanotic melanoma, cell line, skin .p 3850 to 4574 1 to 729       729/952
(76 %)
16 diff
(98.4 %id)
BU683451 lung .p 3851 to 4594 759 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 741/741
(100 %)
3 diff
(99.6 %id)
CA418605 Chondrosarcoma Grade II, Left Pelvis .p 3869 to 4594 740 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 722/722
(100 %)
7 diff
(99.1 %id)
BQ062548 lymph, lymphoma, cell line .p 3873 to 4594 1 to 721   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 721/721
(100 %)
1 diff
(99.9 %id)
CD672598 eye, Iris .p 3875 to 4323 1 to 449   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 449/449
(100 %)
0 diff
(100 %id)
BF345599 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3880 to 4598 1 to 718       718/729
(98 %)
13 diff
(98.3 %id)
BF345472 anaplastic oligodendroglioma with 1p/19qloss, brain .p 3881 to 4587 1 to 702       702/908
(77 %)
10 diff
(98.9 %id)
DB571483 hypothalamus .p 3882 to 4594 1 to 710     Submitted on the opposite strand 710/710
(100 %)
7 diff
(99.1 %id)
CA432562 cell lines, Chondrosarcoma .p 3905 to 4594 707 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 689/690
(99 %)
1 diff
(99.9 %id)
AL568765 placenta .p 3907 to 4548 625 to 1   fully sequenced,   625/625
(100 %)
9 diff
(98.6 %id)
AL514755 neuroblastoma, placenta .p 3909 to 4598 689 to 1   fully sequenced,   689/689
(100 %)
7 diff
(99.0 %id)
BQ003789 Chondrosarcoma, Left Pelvis .p 3919 to 4594 692 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 674/674
(100 %)
4 diff
(99.5 %id)
BX480538   .p 3947 to 4594 1 to 648   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 648/648
(100 %)
0 diff
(100 %id)
CA431190 cell lines, Enchondroma .p 3972 to 4594 644 to 25   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 620/620
(100 %)
3 diff
(99.6 %id)
CB305621 lung, Primary Lung Cystic Fibrosis EpithelialCells .p 3974 to 4602 647 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 629/629
(100 %)
0 diff
(100 %id)
BM982687 lung, Primary Lung Cystic Fibrosis EpithelialCells .p 3981 to 4594 632 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 614/614
(100 %)
2 diff
(99.7 %id)
BQ447849 Knee, Osteoarthritic Cartilage .p 3984 to 4600 632 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 614/614
(100 %)
3 diff
(99.6 %id)
CF541140 lung .p 3985 to 4594 627 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 609/609
(100 %)
1 diff
(99.9 %id)
BM549168 astrocytoma grade IV, cell line, brain .p 3993 to 4594 1 to 602   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 602/602
(100 %)
0 diff
(100 %id)
CA439972 lung, Lung Focal Fibrosis .p 3995 to 4594 617 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 599/599
(100 %)
1 diff
(99.9 %id)
BM707513 eye, eye anterior segment .p 4000 to 4295 3 to 298   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 296/298
(99 %)
5 diff
(98.4 %id)
CA443353 lung, Metastatic Chondrosarcoma .p 4015 to 4602 606 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 588/599
(98 %)
0 diff
(100 %id)
BG393018 embryonal carcinoma, cell line, testis .p 4027 to 4594 1 to 566   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 566/566
(100 %)
2 diff
(99.7 %id)
BU627870 Bone, Enchondroma cell line .p 4033 to 4594 580 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 562/562
(100 %)
0 diff
(100 %id)
BQ183224 Knee, Osteoarthritic Cartilage .p 4036 to 4594 577 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 559/559
(100 %)
0 diff
(100 %id)
BX473061   .p 4037 to 4594 576 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 558/558
(100 %)
1 diff
(99.9 %id)
BU624927 cell lines, Enchondroma .p 4037 to 4594 574 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 556/556
(100 %)
2 diff
(99.7 %id)
BM716199 eye, RPE and Choroid .p 4044 to 4594 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
BM972914 lung .p 4046 to 4594 566 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 548/548
(100 %)
1 diff
(99.9 %id)
CA421178 Bone, Enchondroma cell line .p 4060 to 4594 554 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 536/536
(100 %)
1 diff
(99.9 %id)
AA318327 retina .p 4062 to 4365 1 to 304       304/304
(100 %)
0 diff
(100 %id)
CA443219 lung, Metastatic Chondrosarcoma .p 4064 to 4602 557 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 539/539
(100 %)
0 diff
(100 %id)
BG939376 bone marrow stroma .p 4070 to 4594 557 to 33   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 525/525
(100 %)
0 diff
(100 %id)
CN404930 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .p 4080 to 4579 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BF111905 pooled .p 4092 to 4588 505 to 9       497/505
(98 %)
0 diff
(100 %id)
BP386487 pancreatic islet .p 4101 to 4598 1 to 499     Submitted on the opposite strand 499/501
(99 %)
2 diff
(99.7 %id)
AW517238 cervix .p 4102 to 4569 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AA716166 heart .p 4105 to 4598 493 to 1       493/493
(100 %)
3 diff
(99.4 %id)
BU731047 eye, RPE and Choroid .p 4106 to 4594 506 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 488/488
(100 %)
0 diff
(100 %id)
BU734448 eye, RPE and Choroid .p 4106 to 4587 481 to 1   fully sequenced,   481/481
(100 %)
3 diff
(99.4 %id)
BM670432 eye, lens .p 4114 to 4594 499 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 481/481
(100 %)
2 diff
(99.6 %id)
AI187305   .p 4116 to 4597 482 to 1       482/482
(100 %)
0 diff
(100 %id)
DB571866 hypothalamus .p 4125 to 4593 1 to 469     Submitted on the opposite strand 469/469
(100 %)
0 diff
(100 %id)
AL528257 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .p 4146 to 4552 409 to 21   fully sequenced,   389/409
(95 %)
6 diff
(98.6 %id)
AI204163   .p 4153 to 4604 453 to 2   tiling clone,   452/453
(99 %)
0 diff
(100 %id)
BM702196 eye, optic nerve .p 4158 to 4594 1 to 437   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 437/437
(100 %)
0 diff
(100 %id)
AW469233 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .p 4160 to 4594 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AW571846 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .p 4171 to 4597 427 to 1       427/427
(100 %)
0 diff
(100 %id)
BE045804 follicular carcinoma, thyroid .p 4174 to 4598 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AI885824 anaplastic oligodendroglioma, brain .p 4191 to 4594 404 to 1       404/404
(100 %)
0 diff
(100 %id)
AW204466   .p 4198 to 4594 414 to 18   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 397/397
(100 %)
0 diff
(100 %id)
AI911632 adenocarcinoma, Pancreas .p 4199 to 4598 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AW002439 pooled germ cell tumors .p 4200 to 4594 395 to 1       395/395
(100 %)
0 diff
(100 %id)
BI850739 hypernephroma, cell line, Kidney .p 4204 to 4568 1 to 365       365/365
(100 %)
0 diff
(100 %id)
BG152568 brain, glioblastoma without EGFR amplification .p 4241 to 4569 329 to 1       329/329
(100 %)
0 diff
(100 %id)
BE843380 testis_normal .p 4265 to 4450 186 to 1       186/186
(100 %)
0 diff
(100 %id)
BM673359 eye, eye anterior segment .p 4265 to 4594 348 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 330/330
(100 %)
0 diff
(100 %id)
BQ026412 placenta .p 4278 to 4594 334 to 18   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 317/317
(100 %)
0 diff
(100 %id)
AI933744 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .p 4284 to 4595 312 to 1       312/312
(100 %)
0 diff
(100 %id)
W72409 heart .p 4287 to 4594 306 to 1       306/306
(100 %)
4 diff
(98.7 %id)
BQ018446 lung, Metastatic Chondrosarcoma .p 4291 to 4594 322 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 304/304
(100 %)
0 diff
(100 %id)
BU620424 cell lines, Chondrosarcoma .p 4291 to 4594 322 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 304/304
(100 %)
0 diff
(100 %id)
CD672597 eye, Iris .p 4293 to 4594 318 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 302/302
(100 %)
0 diff
(100 %id)
AI244602 Kidney .p 4301 to 4596 296 to 1       296/296
(100 %)
0 diff
(100 %id)
BG055977 anaplastic oligodendroglioma, brain .p 4305 to 4597 293 to 1       293/293
(100 %)
0 diff
(100 %id)
BM700787 eye, human retina .p 4311 to 4594 1 to 284   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 284/284
(100 %)
0 diff
(100 %id)
BU731782 eye, RPE and Choroid .p 4327 to 4602 294 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 276/276
(100 %)
0 diff
(100 %id)
T05153   .p 4371 to 4590 220 to 1       220/220
(100 %)
0 diff
(100 %id)
AI184539   .p 4371 to 4597 227 to 1       227/227
(100 %)
0 diff
(100 %id)
C01812   .p 4383 to 4594 1 to 212   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 212/212
(100 %)
0 diff
(100 %id)
F08987 brain, total brain .p 4386 to 4594 209 to 1       209/209
(100 %)
0 diff
(100 %id)
AA599553   .p 4403 to 4594 202 to 11   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 192/192
(100 %)
0 diff
(100 %id)
BM672163 eye, human retina .p 4417 to 4563 147 to 1   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 147/147
(100 %)
0 diff
(100 %id)
AA364655 pineal body .p 4436 to 4594 1 to 159       159/159
(100 %)
0 diff
(100 %id)
AW089227 brain, tumor, 5 pooled (see description) .p 4446 to 4594 149 to 1       149/149
(100 %)
0 diff
(100 %id)
AW192009 adenocarcinoma, Pancreas .p 4454 to 4595 142 to 1       142/142
(100 %)
0 diff
(100 %id)
BM664891 eye, optic nerve .p 4473 to 4594 140 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 122/122
(100 %)
0 diff
(100 %id)
AA338834 brain .p 4494 to 4602 109 to 1       109/109
(100 %)
0 diff
(100 %id)
N91031 parathyroid gland, parathyroid tumor .p 4515 to 4601 102 to 16   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 87/87
(100 %)
0 diff
(100 %id)
DA712352   .q 1 to 562 2 to 566   tiling clone, capped   565/565
(100 %)
3 diff
(99.5 %id)
DA399759 thalamus .q 41 to 587 2 to 549   tiling clone, capped   548/548
(100 %)
2 diff
(99.7 %id)
CN309055 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .q 72 to 707 1 to 636       636/636
(100 %)
1 diff
(99.9 %id)
DR003319 fetal brain .q 112 to 600 9 to 495       487/495
(98 %)
2 diff
(99.6 %id)
CA392536 eye, RPE/choroid .q 164 to 820 1 to 657       657/657
(100 %)
0 diff
(100 %id)
AF152335 brain .q 182 to 4780 1 to 4599 exact tiling clone,   4599/4599
(100 %)
0 diff
(100 %id)
NM_018926.2   .q 182 to 4780 1 to 4599 exact RefSeq,   4599/4599
(100 %)
0 diff
(100 %id)
AF135156   .q 654 to 1374 100 to 820   AAA   721/1124
(64 %)
4 diff
(99.7 %id)
BF527613 anaplastic oligodendroglioma with 1p/19qloss, brain .q 1428 to 1940 1 to 527       527/903
(58 %)
16 diff
(98.3 %id)
CN309056 embryonic stem cells, cell lines H1, H7, andH9 .q 1511 to 1907 1 to 397       397/397
(100 %)
1 diff
(99.8 %id)
CX751328 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .q 1531 to 2207 1 to 677     Submitted on the opposite strand 677/677
(100 %)
0 diff
(100 %id)
CN309058 embryonic stem cells, cell lines H1, H7, andH9 .q 1711 to 2254 1 to 544       544/544
(100 %)
3 diff
(99.5 %id)
CN309057 embryonic stem cells, cell lines H1, H7, andH9 .q 2073 to 2803 1 to 731       731/731
(100 %)
0 diff
(100 %id)
AA338835 brain .q 2349 to 2733 1 to 393       391/397
(98 %)
11 diff
(97.3 %id)
CX871557 embryonic stem .q 2505 to 3272 1 to 768       768/768
(100 %)
2 diff
(99.8 %id)
DB092486 testis .r 1 to 564 2 to 565   tiling clone, capped   564/564
(100 %)
3 diff
(99.5 %id)
DA316920 hippocampus .r 4 to 539 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA540830 lung .r 4 to 573 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA108541 cerebellum .r 27 to 583 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA095100 cerebellum .r 34 to 586 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA114181 cerebellum .r 34 to 596 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA551797   .r 34 to 559 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DB075829 testis .r 34 to 573 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA194129 amygdala .r 41 to 622 2 to 586   capped   585/585
(100 %)
5 diff
(99.2 %id)
DA493546 brain .r 43 to 622 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
BC051788 Brain, anaplastic oligodendroglioma with1p/19q loss .r 49 to 4777 28 to 4756 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4729/4729
(100 %)
3 diff
(100.0 %id)
BF531107 anaplastic oligodendroglioma with 1p/19qloss, brain .r 49 to 825 1 to 785       785/1112
(70 %)
38 diff
(96.6 %id)
CN392961 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .r 50 to 757 1 to 709   tiling clone,   709/709
(100 %)
4 diff
(99.5 %id)
BG911582 anaplastic oligodendroglioma with 1p/19qloss, brain .r 50 to 666 28 to 655       628/655
(95 %)
6 diff
(99.1 %id)
CN392962 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .r 61 to 667 1 to 608       608/608
(100 %)
5 diff
(99.2 %id)
AA418589 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .r 71 to 480 1 to 407       407/407
(100 %)
7 diff
(98.3 %id)
NM_018927.2   .r 71 to 4811 1 to 4741 exact RefSeq,   4741/4741
(100 %)
0 diff
(100 %id)
DA791288 brain .r 93 to 719 2 to 629   capped   628/628
(100 %)
4 diff
(99.4 %id)
CN392964 embryonic stem cells, cell lines H1, H7, andH9 .r 110 to 651 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
CN392963 embryonic stem cells, cell lines H1, H7, andH9 .r 115 to 683 1 to 569       569/569
(100 %)
0 diff
(100 %id)
AF152336 brain .r 216 to 4811 1 to 4596 exact tiling clone,   4596/4596
(100 %)
0 diff
(100 %id)
DA522303 brain .r 284 to 847 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
CN392965 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .r 320 to 916 1 to 598       598/598
(100 %)
6 diff
(99.0 %id)
BF333379 colon_ins .r 567 to 770 219 to 18       202/233
(86 %)
0 diff
(100 %id)
BG910706 anaplastic oligodendroglioma with 1p/19qloss, brain .r 725 to 1327 1 to 621       621/781
(79 %)
10 diff
(98.8 %id)
BM742329 stomach .r 824 to 1435 1 to 612       612/612
(100 %)
0 diff
(100 %id)
BM742797 stomach .r 824 to 1359 1 to 536       536/536
(100 %)
0 diff
(100 %id)
BM743038 stomach .r 824 to 1426 1 to 603       603/603
(100 %)
0 diff
(100 %id)
BM743045 stomach .r 824 to 1495 1 to 672       672/672
(100 %)
0 diff
(100 %id)
BM748112 stomach .r 824 to 1419 1 to 596       596/596
(100 %)
0 diff
(100 %id)
BM748122 stomach .r 824 to 1428 1 to 605       605/605
(100 %)
0 diff
(100 %id)
BM746428 stomach .r 824 to 1325 1 to 504       504/504
(100 %)
2 diff
(99.7 %id)
BM746469 stomach .r 824 to 1344 1 to 521       521/521
(100 %)
3 diff
(99.5 %id)
BM744508 stomach .r 824 to 1479 1 to 655       655/655
(100 %)
5 diff
(99.3 %id)
BM753741 stomach .r 824 to 1390 1 to 570       570/570
(100 %)
8 diff
(98.6 %id)
D88799   .r 1145 to 1548 1 to 404       404/406
(99 %)
6 diff
(98.6 %id)
BG818832 anaplastic oligodendroglioma with 1p/19qloss, brain .r 1233 to 1992 1 to 759       759/759
(100 %)
2 diff
(99.8 %id)
CN309054 embryonic stem cells, cell lines H1, H7, andH9 .r 1287 to 1950 1 to 665       665/665
(100 %)
4 diff
(99.4 %id)
BG913583 anaplastic oligodendroglioma with 1p/19qloss, brain .r 1370 to 2117 1 to 749       749/752
(99 %)
27 diff
(96.5 %id)
BG717461 testis .r 1879 to 2553 1 to 677       677/678
(99 %)
8 diff
(98.9 %id)
AL134745 brain .r 1892 to 2617 1 to 725       725/729
(99 %)
3 diff
(99.6 %id)
TI_149274592   .r 2431 to 3149 148 to 859     Submitted on the opposite strand 712/1079
(65 %)
20 diff
(98.2 %id)
BU676242 lung, Primary Lung Epithelial Cells .r 2431 to 2997 44 to 610     Submitted on the opposite strand 567/596
(95 %)
6 diff
(99.0 %id)
CN404932 embryonic stem cells, cell lines H1, H7, andH9 .r 2447 to 2953 1 to 507       507/507
(100 %)
0 diff
(100 %id)
DN991941 brain, whole brain .r 2449 to 2992 1 to 544       544/544
(100 %)
4 diff
(99.3 %id)
DA518018 brain .s 1 to 506 2 to 507   tiling clone, capped   506/506
(100 %)
4 diff
(99.3 %id)
BC150172 Donated clones,Novartis FGA collection .s 20 to 4738 1 to 4719 V28A tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 4719/4719
(100 %)
2 diff
(100.0 %id)
DA573634   .s 49 to 593 2 to 548   capped   547/547
(100 %)
4 diff
(99.3 %id)
AF152332 brain .s 151 to 4746 1 to 4596 exact tiling clone,   4596/4596
(100 %)
0 diff
(100 %id)
NM_018924.2   .s 151 to 4746 1 to 4596 exact RefSeq,   4596/4596
(100 %)
0 diff
(100 %id)
DB143032 thymus .t 1 to 504 2 to 506   tiling clone, capped   505/505
(100 %)
3 diff
(99.5 %id)
DA455616 tongue, tumor tissue .t 3 to 560 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA191112 amygdala .t 4 to 582 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DN995250 breast cancer, Mammary gland (cancer tissue) .t 10 to 808 1 to 800   tiling clone,   800/800
(100 %)
7 diff
(99.2 %id)
AF152330 brain .t 159 to 4748 1 to 4590 exact tiling clone,   4590/4590
(100 %)
0 diff
(100 %id)
NM_018922.2   .t 159 to 4748 1 to 4590 exact RefSeq,   4590/4590
(100 %)
0 diff
(100 %id)
DA184288 amygdala .t 617 to 1092 2 to 480   capped   479/479
(100 %)
5 diff
(99.0 %id)
BY795668 eye .t 1559 to 1852 9 to 302       294/302
(97 %)
6 diff
(98.1 %id)
EC538141 Prostate .t 2113 to 2198 90 to 5       86/96
(89 %)
0 diff
(100 %id)
EC581889 Prostate .t 2113 to 2198 90 to 5       86/97
(88 %)
0 diff
(100 %id)
AF152334 brain .u 1 to 4578 1 to 4578 exact tiling clone,   4578/4578
(100 %)
0 diff
(100 %id)
NM_018925.2   .u 1 to 4578 1 to 4578 exact RefSeq,   4578/4578
(100 %)
0 diff
(100 %id)
TI_891527841   .u 515 to 1724 1206 to 8     Submitted on the opposite strand 1199/1221
(98 %)
0 diff
(100 %id)
TI_891527847   .u 598 to 1728 1133 to 13     Submitted on the opposite strand 1121/1219
(91 %)
0 diff
(100 %id)
TI_891527923   .u 609 to 1730 1121 to 10     Submitted on the opposite strand 1112/1214
(91 %)
0 diff
(100 %id)
TI_891527929   .u 650 to 1730 1091 to 10     Submitted on the opposite strand 1082/1213
(89 %)
0 diff
(100 %id)
TI_891527124   .u 910 to 1933 1 to 1022       1022/1236
(82 %)
7 diff
(99.5 %id)
TI_891527119   .u 920 to 2064 4 to 1131       1128/1205
(93 %)
6 diff
(99.6 %id)
TI_891527840   .u 926 to 2157 1227 to 3     Submitted on the opposite strand 1225/1243
(98 %)
0 diff
(100 %id)
CN309062 embryonic stem cells, cell lines H1, H7, andH9 .u 1025 to 1667 1 to 643       643/643
(100 %)
4 diff
(99.4 %id)
TI_891527928   .u 1060 to 2154 1105 to 10     Submitted on the opposite strand 1096/1237
(88 %)
0 diff
(100 %id)
TI_891527922   .u 1090 to 2161 1087 to 9     Submitted on the opposite strand 1079/1255
(85 %)
0 diff
(100 %id)
TI_891527846   .u 1170 to 2156 993 to 11     Submitted on the opposite strand 983/1188
(82 %)
0 diff
(100 %id)
TI_891527120   .u 1209 to 2117 1 to 908       908/1142
(79 %)
5 diff
(99.6 %id)
TI_891527115   .u 1225 to 2409 11 to 1179       1169/1219
(95 %)
11 diff
(99.1 %id)
CO245817 Chondrosarcoma Lung Metastasis cell lines, lung .u 1327 to 2023 7 to 697       691/818
(84 %)
23 diff
(97.2 %id)
AA405077   .u 1378 to 1832 1 to 457       457/458
(99 %)
16 diff
(96.6 %id)
BI087139 cervix .u 1441 to 2247 12 to 817       806/817
(98 %)
6 diff
(99.3 %id)
TI_154195956   .u 1485 to 2395 9 to 910       902/1059
(85 %)
20 diff
(98.2 %id)
DA545891   .u 1489 to 2055 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
TI_154197588   .u 1491 to 2335 69 to 909       841/989
(85 %)
13 diff
(98.7 %id)
BF926188 nervous_tumor .u 1763 to 2130 385 to 17     Submitted on the opposite strand 369/385
(95 %)
0 diff
(100 %id)
CN404928 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .u 2341 to 3070 1 to 729       729/729
(100 %)
2 diff
(99.8 %id)
AF152333 brain .va 1 to 4578 1 to 4578 exact tiling clone,   4578/4578
(100 %)
0 diff
(100 %id)
NM_003736.2   .va 1 to 4578 1 to 4578 exact RefSeq,   4578/4578
(100 %)
0 diff
(100 %id)
CN404931 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .va 2271 to 3015 1 to 747       747/747
(100 %)
3 diff
(99.6 %id)
DR002336 fetal brain .vb-u 1 to 477 1 to 477   tiling clone,   477/477
(100 %)
4 diff
(99.2 %id)
TI_1242418434   .vb-u 148 to 826 38 to 712       675/1032
(65 %)
6 diff
(99.5 %id)
TI_1242418436   .vb-u 148 to 1280 47 to 1183       1137/1187
(95 %)
6 diff
(99.5 %id)
TI_1242419110   .vb-u 148 to 1271 39 to 1155       1117/1244
(89 %)
6 diff
(99.6 %id)
BC112081 Brain, PCR rescued clones .vb-u 157 to 2919 1 to 2763 D570G E873G tiling clone,   2763/2763
(100 %)
4 diff
(99.9 %id)
BC112083 Brain, PCR rescued clones .vb-u 157 to 2919 1 to 2763 D570G E873G     2763/2763
(100 %)
4 diff
(99.9 %id)
AF152526   .vb-u 231 to 2867 1 to 2637 exact tiling clone,   2637/2637
(100 %)
0 diff
(100 %id)
NM_032407.1   .vb-u 231 to 2867 1 to 2637 exact RefSeq,   2637/2637
(100 %)
0 diff
(100 %id)
TI_1242416852   .vb-u 635 to 1685 1048 to 1       1048/1203
(87 %)
29 diff
(97.6 %id)
TI_1242414554   .vb-u 635 to 1705 1 to 1065       1065/1204
(88 %)
9 diff
(99.3 %id)
TI_1242414548   .vb-u 643 to 1705 11 to 1063       1053/1195
(88 %)
14 diff
(98.9 %id)
TI_1242416846   .vb-u 1316 to 2360 1038 to 6       1033/1077
(95 %)
0 diff
(100 %id)
AI214146 astrocytoma, brain .vb-u 1326 to 1602 442 to 166       277/442
(62 %)
0 diff
(100 %id)
TI_1242414550   .vb-u 1583 to 2568 1 to 973       973/1129
(86 %)
24 diff
(97.9 %id)
TI_1242414544   .vb-u 1589 to 2789 8 to 1214       1207/1255
(96 %)
36 diff
(97.2 %id)
TI_1242418818   .vb-u 1815 to 2919 1181 to 74       1108/1181
(93 %)
0 diff
(100 %id)
TI_1242414546   .vb-u 2282 to 2919 1 to 639       639/1234
(51 %)
7 diff
(99.5 %id)
TI_1242414552   .vb-u 2283 to 2926 1 to 643       643/1172
(54 %)
7 diff
(99.5 %id)
AF152525   .vc-u 1 to 2616 1 to 2616 exact tiling clone,   2616/2616
(100 %)
0 diff
(100 %id)
BC101035 PCR rescued clones .vc-u 1 to 2616 1 to 2616 exact     2616/2616
(100 %)
0 diff
(100 %id)
BC101038 PCR rescued clones .vc-u 1 to 2616 1 to 2616 exact     2616/2616
(100 %)
0 diff
(100 %id)
BC101037 PCR rescued clones .vc-u 1 to 2616 1 to 2615       2615/2615
(100 %)
1 diff
(100.0 %id)
NM_032406.1   .vc-u 1 to 2616 1 to 2616 exact RefSeq,   2616/2616
(100 %)
0 diff
(100 %id)
BC101036 PCR rescued clones .vc-u 4 to 2616 1 to 2613       2613/2613
(100 %)
0 diff
(100 %id)
BF826333 head_normal .vc-u 2246 to 2613 401 to 34     Submitted on the opposite strand 368/408
(90 %)
0 diff
(100 %id)
NM_032402.1   .vd-u 1 to 2794 1 to 2794 exact RefSeq,   2794/2794
(100 %)
0 diff
(100 %id)
AF152524   .vd-u 116 to 2707 1 to 2592 exact tiling clone,   2592/2592
(100 %)
0 diff
(100 %id)
L11371 brain .vd-u 2309 to 2794 1 to 484   tiling clone,   484/485
(99 %)
6 diff
(98.8 %id)
DA237009 brain .ve-u 1 to 584 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA743801.
matches multiple genes
  .ve-u 1 to 493 2 to 494   tiling clone, capped also hits gene sporpybo 493/495
(99 %)
2 diff
(99.6 %id)
DA862109 placenta .ve-u 22 to 582 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA390286 thalamus .ve-u 26 to 598 2 to 572   capped   571/571
(100 %)
4 diff
(99.3 %id)
DR001803 fetal brain .ve-u 41 to 723 1 to 683       683/686
(99 %)
6 diff
(99.2 %id)
DR003541 hippocampus .ve-u 43 to 681 9 to 646       638/646
(98 %)
6 diff
(99.1 %id)
BC014509 Colon, adenocarcinoma .ve-u 79 to 2665 1 to 2587   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 2587/2593
(99 %)
2 diff
(100.0 %id)
BC093873 Brain, PCR rescued clones .ve-u 125 to 2822 1 to 2692 I89V tiling clone,   2692/2692
(100 %)
3 diff
(99.9 %id)
BC093875 Brain, PCR rescued clones .ve-u 125 to 2822 1 to 2693 I89V tiling clone,   2693/2693
(100 %)
3 diff
(99.9 %id)
TI_891527851   .ve-u 125 to 804 683 to 4     Submitted on the opposite strand 680/1232
(55 %)
0 diff
(100 %id)
TI_891527852   .ve-u 125 to 499 378 to 4     Submitted on the opposite strand 375/1226
(30 %)
0 diff
(100 %id)
TI_891527933   .ve-u 125 to 804 681 to 3     Submitted on the opposite strand 679/1234
(55 %)
0 diff
(100 %id)
TI_891527934   .ve-u 125 to 498 380 to 7     Submitted on the opposite strand 374/1225
(30 %)
0 diff
(100 %id)
TI_891530146   .ve-u 125 to 1243 49 to 1162     Submitted on the opposite strand 1114/1264
(88 %)
16 diff
(98.8 %id)
TI_891527856   .ve-u 125 to 1160 1059 to 15     Submitted on the opposite strand 1045/1255
(83 %)
0 diff
(100 %id)
TI_891527857   .ve-u 125 to 803 685 to 7     Submitted on the opposite strand 679/1234
(55 %)
0 diff
(100 %id)
TI_891527938   .ve-u 125 to 1163 1059 to 16     Submitted on the opposite strand 1044/1249
(83 %)
0 diff
(100 %id)
TI_891527939   .ve-u 125 to 804 684 to 6     Submitted on the opposite strand 679/1241
(54 %)
0 diff
(100 %id)
TI_891527940   .ve-u 125 to 497 379 to 7     Submitted on the opposite strand 373/1232
(30 %)
1 diff
(100.0 %id)
TI_891530147   .ve-u 125 to 1243 46 to 1150     Submitted on the opposite strand 1105/1246
(88 %)
20 diff
(98.4 %id)
TI_891527850   .ve-u 129 to 1174 1057 to 7     Submitted on the opposite strand 1051/1235
(85 %)
0 diff
(100 %id)
AF152503   .ve-u 189 to 2741 1 to 2553 exact tiling clone,   2553/2553
(100 %)
0 diff
(100 %id)
NM_032090.1   .ve-u 189 to 2741 1 to 2553 exact RefSeq,   2553/2553
(100 %)
0 diff
(100 %id)
BG822174 adenocarcinoma cell line, colon .ve-u 192 to 893 127 to 851   available from MGC,   795/1078
(73 %)
47 diff
(95.7 %id)
TI_891527849   .ve-u 452 to 1699 1231 to 4     Submitted on the opposite strand 1228/1233
(99 %)
0 diff
(100 %id)
TI_891527855   .ve-u 457 to 1699 1247 to 4     Submitted on the opposite strand 1244/1256
(99 %)
0 diff
(100 %id)
TI_891527932   .ve-u 464 to 1168 721 to 17     Submitted on the opposite strand 705/721
(97 %)
0 diff
(100 %id)
TI_891527931   .ve-u 510 to 1699 1182 to 5     Submitted on the opposite strand 1178/1236
(95 %)
0 diff
(100 %id)
AW371910 breast .ve-u 531 to 1092 567 to 5       563/567
(99 %)
0 diff
(100 %id)
AW371925 breast .ve-u 531 to 1092 567 to 5       563/567
(99 %)
0 diff
(100 %id)
TI_891527937   .ve-u 539 to 1699 1163 to 5     Submitted on the opposite strand 1159/1244
(93 %)
0 diff
(100 %id)
TI_891527854   .ve-u 732 to 1943 1211 to 4     Submitted on the opposite strand 1208/1236
(97 %)
0 diff
(100 %id)
TI_891527128   .ve-u 754 to 1703 1 to 945       945/1183
(79 %)
14 diff
(98.9 %id)
TI_891527133   .ve-u 755 to 1943 1 to 1184       1184/1210
(97 %)
29 diff
(97.7 %id)
TI_891527942   .ve-u 844 to 1938 1098 to 8     Submitted on the opposite strand 1175/1227
(95 %)
16 diff
(98.7 %id)
TI_891527936   .ve-u 845 to 1947 1097 to 2     Submitted on the opposite strand 1096/1227
(89 %)
0 diff
(100 %id)
CD654489 Embryonic Stem cells .ve-u 1029 to 1875 12 to 851       840/860
(97 %)
15 diff
(98.3 %id)
TI_891527134   .ve-u 1142 to 2209 1 to 1066       1066/1223
(87 %)
7 diff
(99.5 %id)
TI_891527129   .ve-u 1149 to 2186 9 to 1040       1032/1219
(84 %)
6 diff
(99.6 %id)
TI_891527935   .ve-u 1254 to 2475 1214 to 11     Submitted on the opposite strand 1204/1220
(98 %)
0 diff
(100 %id)
TI_891527853   .ve-u 1305 to 2484 1168 to 5     Submitted on the opposite strand 1164/1225
(95 %)
0 diff
(100 %id)
TI_891527859   .ve-u 1359 to 2481 1115 to 6     Submitted on the opposite strand 1110/1223
(90 %)
0 diff
(100 %id)
BM723008 eye, fetal eye .ve-u 1423 to 1967 1 to 546     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 546/546
(100 %)
1 diff
(99.9 %id)
BF812849 colon_ins .ve-u 1458 to 1816 363 to 8     Submitted on the opposite strand 356/363
(98 %)
0 diff
(100 %id)
TI_891527125   .ve-u 1537 to 2674 1 to 1127       1127/1200
(93 %)
6 diff
(99.5 %id)
TI_891527130   .ve-u 1538 to 2588 1 to 1038       1038/1129
(91 %)
27 diff
(97.7 %id)
BM677465 eye, fetal eye .ve-u 1971 to 2665 704 to 8   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 697/704
(99 %)
0 diff
(100 %id)
BP387633 pancreatic islet .ve-u 2218 to 2658 1 to 443     Submitted on the opposite strand 443/443
(100 %)
2 diff
(99.6 %id)
TI_891527127   .ve-u 2276 to 2831 1 to 550   tiling clone,   550/1211
(45 %)
11 diff
(99.1 %id)
TI_891527132   .ve-u 2278 to 2822 5 to 544       540/1214
(44 %)
8 diff
(99.4 %id)
TI_891527131   .ve-u 2768 to 2819 963 to 1014       1006/1194
(84 %)
11 diff
(99.1 %id)
NM_032091.1   .vf-u 1 to 3117 1 to 3117 exact RefSeq,   3117/3117
(100 %)
0 diff
(100 %id)
AF152505   .vf-u 259 to 2772 1 to 2514 exact tiling clone,   2514/2514
(100 %)
0 diff
(100 %id)
BI033382 nervous_normal .vf-u 2566 to 2791 1 to 226       226/229
(98 %)
13 diff
(94.4 %id)
BF327891 breast_normal .vf-u 2672 to 3094 469 to 48   tiling clone,   422/469
(89 %)
0 diff
(100 %id)
BE007760 breast_normal .vf-u 2741 to 3117 377 to 1   tiling clone, Submitted on the opposite strand 377/377
(100 %)
3 diff
(99.3 %id)
AF152510   .vg-u 1 to 2490 1 to 2490 exact tiling clone,   2490/2490
(100 %)
0 diff
(100 %id)
NM_032011.1   .vg-u 1 to 2490 1 to 2490 exact RefSeq,   2490/2490
(100 %)
0 diff
(100 %id)
DA233987 brain .vh-u 1 to 584 2 to 585   tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
DA779482 brain .vh-u 7 to 575 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BC132769 Brain, cerebellum, PCR rescued clones .vh-u 128 to 2695 1 to 2568 exact tiling clone,   2568/2568
(100 %)
0 diff
(100 %id)
TI_1752768558   .vh-u 128 to 1191 53 to 1122       1070/1125
(95 %)
16 diff
(98.6 %id)
TI_1752768670   .vh-u 128 to 1277 49 to 1196     Submitted on the opposite strand 1148/1289
(89 %)
15 diff
(98.9 %id)
AF152516   .vh-u 149 to 2635 1 to 2487 exact     2487/2487
(100 %)
0 diff
(100 %id)
NM_032089.1   .vh-u 149 to 2635 1 to 2487 exact RefSeq,   2487/2487
(100 %)
0 diff
(100 %id)
DA399179 thalamus .vh-u 835 to 1382 2 to 551   capped   550/554
(99 %)
10 diff
(98.2 %id)
EB385451 eye, optic nerve .vh-u 1057 to 1805 749 to 1     Submitted on the opposite strand 749/749
(100 %)
2 diff
(99.8 %id)
TI_1752769488   .vh-u 1141 to 2382 1253 to 15       1239/1274
(97 %)
0 diff
(100 %id)
TI_1752769020   .vh-u 1199 to 2478 1 to 1276       1276/1306
(97 %)
37 diff
(97.2 %id)
AL134794 brain .vh-u 1223 to 1910 1 to 687       687/687
(100 %)
3 diff
(99.6 %id)
TI_1752768560   .vh-u 1568 to 2702 1215 to 68       1148/1215
(94 %)
0 diff
(100 %id)
BI036374 nervous_tumor .vh-u 1617 to 2040 12 to 432       421/432
(97 %)
6 diff
(98.7 %id)
NM_032009.1   .vi-u 1 to 2657 1 to 2657 exact RefSeq,   2657/2657
(100 %)
0 diff
(100 %id)
BC093871 Brain, PCR rescued clones .vi-u 135 to 2708 1 to 2574 exact tiling clone,   2574/2574
(100 %)
1 diff
(100.0 %id)
BC104950 Brain, PCR rescued clones .vi-u 135 to 2708 1 to 2574 exact     2574/2574
(100 %)
1 diff
(100.0 %id)
AF152508   .vi-u 186 to 2657 1 to 2472 exact tiling clone,   2472/2472
(100 %)
0 diff
(100 %id)
DB266328 uterus .vi-u 1235 to 1805 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BQ640654 eye, retina .vi-u 1429 to 1972 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
TI_891527111   .vi-u 1519 to 2654 1 to 1120       1120/1196
(93 %)
26 diff
(97.9 %id)
TI_1241108535   .vi-u 1520 to 2679 1 to 1150       1150/1220
(94 %)
13 diff
(99.0 %id)
AL138095 brain .vi-u 1643 to 2134 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
TI_891530143   .vi-u 1650 to 2718 1104 to 49   tiling clone, Submitted on the opposite strand 1056/1221
(86 %)
0 diff
(100 %id)
BU101609   .vi-u 1804 to 2303 1 to 499       499/502
(99 %)
7 diff
(98.7 %id)
CN480155 Knee, Osteoarthritic Cartilage .vi-u 2036 to 2598 562 to 3   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 560/562
(99 %)
0 diff
(100 %id)
BM987939 mixed .vi-u 2424 to 2598 187 to 13   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 175/190
(92 %)
0 diff
(100 %id)
DN916730   .vi-u 2466 to 3135 1 to 663   tiling clone,   663/666
(99 %)
16 diff
(97.6 %id)
W37417 parathyroid gland, parathyroid tumor .vi-u 3039 to 3403 1 to 368   tiling clone,   368/524
(70 %)
7 diff
(98.7 %id)
CD299621 Blood vessels - aorta, basilar and artery .vi-u 3276 to 3919 1 to 648   tiling clone,   648/781
(82 %)
12 diff
(98.5 %id)
DN916729   .vi-u 3351 to 3903 600 to 48   tiling clone,   553/600
(92 %)
0 diff
(100 %id)
BX353634 Neuroblastoma Cot 25-normalized .vj-u 1 to 624 1 to 624   tiling clone,   624/624
(100 %)
1 diff
(99.9 %id)
BC112082 Lung, PCR rescued clones .vj-u 67 to 2682 1 to 2616 V152I tiling clone,   2616/2616
(100 %)
1 diff
(100.0 %id)
BC112084 Lung, PCR rescued clones .vj-u 67 to 2682 1 to 2616 V152I     2616/2616
(100 %)
1 diff
(100.0 %id)
TI_1242414986   .vj-u 67 to 1141 48 to 1116       1069/1243
(86 %)
9 diff
(99.3 %id)
TI_1242414982   .vj-u 67 to 1197 49 to 1172       1124/1264
(88 %)
12 diff
(99.1 %id)
AF152507   .vj-u 115 to 2586 1 to 2472 exact tiling clone,   2472/2472
(100 %)
0 diff
(100 %id)
NM_031993.1   .vj-u 115 to 2586 1 to 2472 exact RefSeq,   2472/2472
(100 %)
0 diff
(100 %id)
TI_1242417218   .vj-u 344 to 1565 1208 to 5       1204/1260
(95 %)
0 diff
(100 %id)
BX389444 Neuroblastoma Cot 25-normalized .vj-u 534 to 1444 19 to 935       917/936
(97 %)
6 diff
(99.4 %id)
TI_1242417214   .vj-u 765 to 1885 1115 to 3       1113/1231
(90 %)
0 diff
(100 %id)
AW407387 lymph .vj-u 1164 to 1277 1 to 114       114/114
(100 %)
5 diff
(95.7 %id)
TI_151763607   .vj-u 1539 to 2215 721 to 39       683/998
(68 %)
0 diff
(100 %id)
BM931716 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vj-u 1544 to 2204 1 to 661       661/661
(100 %)
2 diff
(99.7 %id)
TI_1242415360   .vj-u 1781 to 2682 1 to 902       902/1242
(72 %)
2 diff
(99.9 %id)
TI_1242414992   .vj-u 1792 to 2682 961 to 63       899/966
(93 %)
0 diff
(100 %id)
BF511055   .vj-u 1870 to 2209 340 to 1       340/340
(100 %)
0 diff
(100 %id)
AI739217 colon, colon tumor, RER+ .vj-u 1878 to 2192 315 to 1       315/315
(100 %)
3 diff
(99.1 %id)
TI_1242415842   .vj-u 2146 to 2682 1 to 535       535/1212
(44 %)
4 diff
(99.7 %id)
AW973926   .vj-u 2230 to 2566 1 to 337       337/339
(99 %)
14 diff
(95.9 %id)
AF152522   .vk-u 1 to 2463 1 to 2463 exact tiling clone,   2463/2463
(100 %)
0 diff
(100 %id)
NM_032100.1   .vk-u 1 to 2463 1 to 2463 exact RefSeq,   2463/2463
(100 %)
0 diff
(100 %id)
AF152511   .vl-u 1 to 2463 1 to 2463 exact tiling clone,   2463/2463
(100 %)
0 diff
(100 %id)
NM_032053.1   .vl-u 1 to 2529 1 to 2529 exact RefSeq,   2529/2529
(100 %)
0 diff
(100 %id)
AI805761 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vl-u 1972 to 2529 558 to 1   tiling clone,   558/558
(100 %)
2 diff
(99.7 %id)
BX100615 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vl-u 2099 to 2529 446 to 15   AAA   432/432
(100 %)
1 diff
(99.8 %id)
NM_032094.1   .vm-u 1 to 2632 1 to 2632 exact RefSeq,   2632/2632
(100 %)
0 diff
(100 %id)
AF152506   .vm-u 170 to 2632 1 to 2463 exact tiling clone,   2463/2463
(100 %)
0 diff
(100 %id)
CN309063 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vn-u 1 to 407 1 to 407   tiling clone,   407/407
(100 %)
2 diff
(99.6 %id)
TI_891527919   .vn-u 52 to 1118 1086 to 16     Submitted on the opposite strand 1071/1213
(88 %)
0 diff
(100 %id)
BC093877 Brain, PCR rescued clones .vn-u 53 to 2670 1 to 2618 exact     2618/2618
(100 %)
0 diff
(100 %id)
BC093879 Brain, PCR rescued clones .vn-u 53 to 2672 1 to 2620 exact tiling clone,   2620/2620
(100 %)
0 diff
(100 %id)
TI_891527839   .vn-u 53 to 432 383 to 4   AAA Submitted on the opposite strand 380/1215
(31 %)
0 diff
(100 %id)
TI_891527920   .vn-u 53 to 747 697 to 4     Submitted on the opposite strand 694/1276
(54 %)
0 diff
(100 %id)
TI_891527921   .vn-u 53 to 440 392 to 6     Submitted on the opposite strand 387/1232
(31 %)
0 diff
(100 %id)
TI_891530144   .vn-u 53 to 1148 46 to 1132     Submitted on the opposite strand 1087/1228
(88 %)
17 diff
(98.7 %id)
TI_891527844   .vn-u 53 to 716 669 to 6     Submitted on the opposite strand 664/1237
(53 %)
0 diff
(100 %id)
TI_891527845   .vn-u 53 to 439 396 to 8     Submitted on the opposite strand 389/1236
(31 %)
0 diff
(100 %id)
TI_891527926   .vn-u 53 to 737 693 to 10     Submitted on the opposite strand 684/1215
(56 %)
0 diff
(100 %id)
TI_891527927   .vn-u 53 to 432 383 to 4     Submitted on the opposite strand 380/1214
(31 %)
0 diff
(100 %id)
TI_891530145   .vn-u 53 to 1068 49 to 1058     Submitted on the opposite strand 1010/1234
(81 %)
7 diff
(99.5 %id)
TI_891527843   .vn-u 55 to 1122 1077 to 8     Submitted on the opposite strand 1070/1233
(86 %)
11 diff
(99.2 %id)
TI_891527925   .vn-u 62 to 1134 1073 to 4     Submitted on the opposite strand 1070/1215
(88 %)
0 diff
(100 %id)
CN309060 embryonic stem cells, cell lines H1, H7, andH9 .vn-u 114 to 769 1 to 655       655/655
(100 %)
4 diff
(99.4 %id)
AF152521   .vn-u 144 to 2600 1 to 2457 exact     2457/2457
(100 %)
0 diff
(100 %id)
NM_032099.1   .vn-u 144 to 2600 1 to 2457 exact RefSeq,   2457/2457
(100 %)
0 diff
(100 %id)
CN309061 embryonic stem cells, cell lines H1, H7, andH9 .vn-u 350 to 1088 1 to 738       738/740
(99 %)
2 diff
(99.8 %id)
TI_891527924   .vn-u 384 to 1576 1183 to 2     Submitted on the opposite strand 1182/1226
(96 %)
0 diff
(100 %id)
TI_891527930   .vn-u 393 to 1576 1179 to 5     Submitted on the opposite strand 1175/1235
(95 %)
0 diff
(100 %id)
TI_891527842   .vn-u 450 to 1577 1128 to 6     Submitted on the opposite strand 1123/1232
(91 %)
0 diff
(100 %id)
TI_891527118   .vn-u 512 to 1581 1 to 1064       1064/1218
(87 %)
6 diff
(99.6 %id)
TI_891527123   .vn-u 520 to 1527 12 to 1012       1001/1182
(84 %)
10 diff
(99.2 %id)
BQ318893 colon .vn-u 609 to 1015 1 to 406       406/406
(100 %)
1 diff
(99.8 %id)
BQ318895 colon .vn-u 609 to 710 1 to 102       102/102
(100 %)
0 diff
(100 %id)
AL134217 brain .vn-u 887 to 1287 1 to 401       401/401
(100 %)
1 diff
(99.8 %id)
TI_891530150   .vn-u 1589 to 2681 1132 to 53     Submitted on the opposite strand 1080/1219
(88 %)
18 diff
(98.6 %id)
TI_891530151   .vn-u 1633 to 2672 1103 to 72     Submitted on the opposite strand 1032/1206
(85 %)
0 diff
(100 %id)
TI_891527121   .vn-u 1710 to 2672 1 to 963       963/1216
(79 %)
9 diff
(99.3 %id)
TI_891527116   .vn-u 1723 to 2681 16 to 974   tiling clone,   959/1237
(77 %)
6 diff
(99.6 %id)
TI_891527117   .vn-u 2181 to 2681 1 to 501       501/1229
(40 %)
8 diff
(99.4 %id)
TI_891527122   .vn-u 2181 to 2672 1 to 492       492/1148
(42 %)
4 diff
(99.7 %id)
T05576   .vn-u 2324 to 2576 254 to 1       254/254
(100 %)
2 diff
(99.3 %id)
BC136702 Brain, cerebellum, PCR rescued clones .vo-u 1 to 2576 1 to 2576 exact tiling clone,   2576/2576
(100 %)
0 diff
(100 %id)
BC136703 Brain, cerebellum, PCR rescued clones .vo-u 1 to 2576 1 to 2576 exact     2576/2576
(100 %)
0 diff
(100 %id)
AF152513   .vo-u 92 to 2548 1 to 2457 exact     2457/2457
(100 %)
0 diff
(100 %id)
NM_032086.1   .vo-u 92 to 2548 1 to 2457 exact RefSeq,   2457/2457
(100 %)
0 diff
(100 %id)
BC136747 Brain, cerebellum, PCR rescued clones .vp-u 1 to 2624 1 to 2624 exact tiling clone,   2624/2624
(100 %)
0 diff
(100 %id)
BC136748 Brain, cerebellum, PCR rescued clones .vp-u 1 to 2636 1 to 2637 exact     2637/2637
(100 %)
1 diff
(100.0 %id)
AF152514   .vp-u 66 to 2519 1 to 2454 exact     2454/2454
(100 %)
0 diff
(100 %id)
NM_032087.1   .vp-u 66 to 2786 1 to 2721 exact RefSeq,   2721/2721
(100 %)
0 diff
(100 %id)
BF365422 nervous_tumor .vp-u 2456 to 2786 7 to 335   tiling clone,   329/335
(98 %)
2 diff
(99.5 %id)
AF152519   .vq-u 1 to 2445 1 to 2445 exact tiling clone,   2445/2445
(100 %)
0 diff
(100 %id)
NM_032097.1   .vq-u 1 to 2445 1 to 2445 exact RefSeq,   2445/2445
(100 %)
0 diff
(100 %id)
BC104926 Brain, cerebral cortex and lung, PCR rescuedclones .vr-u 1 to 2570 1 to 2570 exact tiling clone,   2570/2570
(100 %)
0 diff
(100 %id)
BC113460 Brain, cerebral cortex and lung, PCR rescuedclones .vr-u 1 to 2570 1 to 2570 exact     2570/2570
(100 %)
0 diff
(100 %id)
AF152512   .vr-u 100 to 2541 1 to 2442 exact     2442/2442
(100 %)
0 diff
(100 %id)
NM_032054.1   .vr-u 100 to 2541 1 to 2442 exact RefSeq,   2442/2442
(100 %)
0 diff
(100 %id)
TI_1241110607   .vr-u 1482 to 2570 1151 to 64       1088/1162
(93 %)
0 diff
(100 %id)
TI_1243021001   .vr-u 1513 to 2570 1192 to 139       1054/1248
(84 %)
0 diff
(100 %id)
TI_1243021393   .vr-u 1618 to 2570 1090 to 143       1068/1279
(83 %)
23 diff
(98.3 %id)
TI_1243018767   .vr-u 2156 to 2570 10 to 424       415/1219
(34 %)
1 diff
(100.0 %id)
CN413365 embryonic stem cells, cell lines H1, H7, andH9 .vs-u 1 to 537 1 to 537   tiling clone,   537/537
(100 %)
0 diff
(100 %id)
DR002984 fetal brain .vs-u 228 to 797 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
DR002884 fetal brain .vs-u 353 to 1046 11 to 704       694/704
(98 %)
6 diff
(99.2 %id)
BC101805 Brain, PCR rescued clones .vs-u 384 to 2940 1 to 2557 exact tiling clone,   2557/2557
(100 %)
0 diff
(100 %id)
TI_927045178   .vs-u 384 to 1190 249 to 1047     Submitted on the opposite strand 799/1212
(65 %)
30 diff
(97.6 %id)
TI_927047586   .vs-u 384 to 1486 40 to 1144       1105/1146
(96 %)
8 diff
(99.4 %id)
TI_927047902   .vs-u 384 to 1489 50 to 1140       1091/1239
(88 %)
6 diff
(99.6 %id)
AF152518   .vs-u 447 to 2882 1 to 2436 exact     2436/2436
(100 %)
0 diff
(100 %id)
NM_032096.1   .vs-u 447 to 2882 1 to 2436 exact RefSeq,   2436/2436
(100 %)
0 diff
(100 %id)
BF325929 amnion_normal .vs-u 752 to 1335 1 to 584       584/584
(100 %)
8 diff
(98.7 %id)
BF325898 amnion_normal .vs-u 760 to 1297 1 to 538       538/538
(100 %)
6 diff
(98.9 %id)
TI_927043267   .vs-u 858 to 2028 8 to 1162       1155/1207
(95 %)
38 diff
(96.9 %id)
TI_927043673   .vs-u 993 to 2193 1215 to 8       1208/1291
(93 %)
0 diff
(100 %id)
TI_927043785   .vs-u 1030 to 2186 1156 to 5       1152/1217
(94 %)
0 diff
(100 %id)
TI_927043722   .vs-u 1075 to 2177 1116 to 17       1100/1280
(85 %)
0 diff
(100 %id)
TI_927043268   .vs-u 1411 to 2436 10 to 1025       1016/1206
(84 %)
6 diff
(99.6 %id)
TI_927043784   .vs-u 1429 to 2637 1227 to 12       1216/1263
(96 %)
0 diff
(100 %id)
TI_927043672   .vs-u 1558 to 2634 1087 to 16       1072/1248
(85 %)
0 diff
(100 %id)
TI_927043264   .vs-u 1716 to 2841 1 to 1105       1105/1180
(93 %)
44 diff
(96.3 %id)
TI_927047681   .vs-u 1787 to 2940 1212 to 75       1138/1286
(88 %)
0 diff
(100 %id)
CF125873 Chondrosarcoma Lung Metastasis cell lines, lung .vs-u 1964 to 2340 1 to 377       377/377
(100 %)
10 diff
(97.4 %id)
CF126043 Chondrosarcoma Lung Metastasis cell lines, lung .vs-u 1964 to 2575 1 to 612       612/612
(100 %)
0 diff
(100 %id)
TI_154187337   .vs-u 1964 to 2581 179 to 799       621/740
(83 %)
57 diff
(92.3 %id)
TI_154187529   .vs-u 1964 to 2740 136 to 909       774/921
(84 %)
19 diff
(98.0 %id)
TI_927046871   .vs-u 1999 to 2940 1067 to 137       931/1194
(77 %)
0 diff
(100 %id)
TI_927047909   .vs-u 2123 to 2940 866 to 52       815/1069
(76 %)
0 diff
(100 %id)
BI049488 placenta_normal .vs-u 2138 to 2420 1 to 283       283/286
(98 %)
3 diff
(99.0 %id)
BF924662 nervous_tumor .vs-u 2139 to 2291 1 to 153       153/153
(100 %)
8 diff
(94.8 %id)
TI_927043265   .vs-u 2205 to 2940 12 to 746       735/1220
(60 %)
2 diff
(99.9 %id)
BG011160 placenta_normal .vs-u 2282 to 2500 1 to 219       219/219
(100 %)
5 diff
(97.8 %id)
TI_927043266   .vs-u 2572 to 2940 1 to 368       368/1199
(30 %)
5 diff
(99.6 %id)
AF152517   .vt-u 1 to 2433 1 to 2433 exact tiling clone,   2433/2433
(100 %)
0 diff
(100 %id)
BC103926 PCR rescued clones .vt-u 1 to 2433 1 to 2433 exact     2433/2433
(100 %)
2 diff
(100.0 %id)
BC103927 PCR rescued clones .vt-u 1 to 2433 1 to 2433 exact     2433/2433
(100 %)
0 diff
(100 %id)
BC103928 PCR rescued clones .vt-u 1 to 2433 1 to 2433 G481D S801P     2433/2433
(100 %)
2 diff
(100.0 %id)
NM_032095.1   .vt-u 1 to 2433 1 to 2433 exact RefSeq,   2433/2433
(100 %)
0 diff
(100 %id)
NM_032101.1   .vu-u 1 to 2715 1 to 2715 exact RefSeq,   2715/2715
(100 %)
0 diff
(100 %id)
AF152523   .vu-u 146 to 2572 1 to 2427 exact tiling clone,   2427/2427
(100 %)
0 diff
(100 %id)
AW057773 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .vu-u 2072 to 2715 644 to 1   tiling clone,   644/644
(100 %)
15 diff
(97.7 %id)
AL598340   .vv-u 1 to 587 8 to 594   tiling clone,   594/594
(100 %)
1 diff
(99.9 %id)
DA194111 amygdala .vv-u 1 to 584 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
TI_1243017795   .vv-u 131 to 1242 45 to 1144       1100/1217
(90 %)
6 diff
(99.6 %id)
TI_1243017797   .vv-u 131 to 1306 45 to 1226       1182/1263
(93 %)
36 diff
(97.2 %id)
TI_1243023117   .vv-u 131 to 1276 50 to 1192       1143/1252
(91 %)
19 diff
(98.5 %id)
BC113607 Lung, PCR rescued clones .vv-u 133 to 2627 1 to 2495 exact     2495/2495
(100 %)
0 diff
(100 %id)
TI_1242414988   .vv-u 134 to 1295 46 to 1204       1159/1253
(92 %)
23 diff
(98.2 %id)
BC112088 Lung, PCR rescued clones .vv-u 135 to 2628 1 to 2494 exact tiling clone,   2494/2494
(100 %)
0 diff
(100 %id)
AF152520   .vv-u 182 to 2593 1 to 2412 exact     2412/2412
(100 %)
0 diff
(100 %id)
NM_032098.1   .vv-u 182 to 2593 1 to 2412 exact RefSeq,   2412/2412
(100 %)
0 diff
(100 %id)
AB000896   .vv-u 461 to 883 1 to 423       423/423
(100 %)
0 diff
(100 %id)
TI_1242417210   .vv-u 503 to 1559 1062 to 8       1055/1152
(91 %)
42 diff
(96.4 %id)
TI_1242415844   .vv-u 597 to 1822 5 to 1236       1232/1256
(98 %)
28 diff
(97.8 %id)
BU556517 ovary, teratocarcinoma, cell line .vv-u 892 to 1716 1 to 825       825/956
(86 %)
9 diff
(99.1 %id)
TI_1242417204   .vv-u 999 to 1942 952 to 9       944/1076
(87 %)
0 diff
(100 %id)
TI_1243018855   .vv-u 1035 to 1876 1 to 843       843/843
(100 %)
8 diff
(99.1 %id)
TI_1242417198   .vv-u 1472 to 2341 878 to 8       871/883
(98 %)
0 diff
(100 %id)
TI_1243017801   .vv-u 1561 to 2628 1126 to 70       1057/1230
(85 %)
0 diff
(100 %id)
TI_1242414998   .vv-u 1561 to 2628 1128 to 69       1060/1235
(85 %)
0 diff
(100 %id)
TI_1243023501   .vv-u 1565 to 2628 1142 to 76       1067/1157
(92 %)
0 diff
(100 %id)
TI_1243017799   .vv-u 1575 to 2628 1115 to 70       1046/1254
(83 %)
0 diff
(100 %id)
TI_1243020047   .vv-u 1641 to 2344 706 to 2       705/721
(97 %)
0 diff
(100 %id)
TI_1243018081   .vv-u 1964 to 2628 8 to 673       666/1247
(53 %)
6 diff
(99.6 %id)
BX091869 placenta .vv-u 2116 to 2827 1 to 709       709/709
(100 %)
3 diff
(99.6 %id)
BM992026 Bone, Subchondral Bone .vv-u 2367 to 2991 642 to 19   AAA   624/624
(100 %)
3 diff
(99.6 %id)
AB002325 brain .vv-u 2462 to 8916 1 to 6457   available from KIAA, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 6457/6457
(100 %)
9 diff
(99.9 %id)
BC152415 Clones donated by Kazusa DNA Research Inst. .vv-u 2462 to 8916 1 to 6457   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 6457/6457
(100 %)
9 diff
(99.9 %id)
AB073642   .vv-u 2602 to 4717 1 to 2115   tiling clone,   2115/2119
(99 %)
5 diff
(99.8 %id)
AA999679 breast .vv-u 2641 to 2990 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
BQ023871 placenta .vv-u 2655 to 2995 355 to 15   AAA   341/341
(100 %)
1 diff
(99.8 %id)
R34362 placenta .vv-u 2711 to 2986 291 to 7       285/348
(81 %)
0 diff
(100 %id)
AA999664 breast .vv-u 2812 to 2990 179 to 1       179/179
(100 %)
0 diff
(100 %id)
AW973585   .vv-u 4110 to 4717 606 to 1     Submitted on the opposite strand 606/610
(99 %)
5 diff
(99.2 %id)
BQ026886 Chondrosarcoma, Left Pelvis .vv-u 4110 to 4718 627 to 19   AAA   609/609
(100 %)
1 diff
(99.9 %id)
CD678805 eye, Trabecular meshwork .vv-u 4185 to 4718 1 to 534       534/534
(100 %)
0 diff
(100 %id)
D79714 aorta .vv-u 4213 to 4451 1 to 238       238/247
(96 %)
1 diff
(99.6 %id)
NM_014004.2   .vv-u 4213 to 7700 1 to 3488   RefSeq,   3488/3488
(100 %)
0 diff
(100 %id)
AA578755 colon, tumor .vv-u 4270 to 4718 449 to 1       449/449
(100 %)
0 diff
(100 %id)
H99982 melanocyte .vv-u 4621 to 4718 100 to 1       100/102
(98 %)
2 diff
(98.1 %id)
AF152515   .vv-u 5111 to 7573 1 to 2463   tiling clone,   2463/2463
(100 %)
0 diff
(100 %id)
BE463812 pooled germ cell tumors .vv-u 7019 to 7700 684 to 2       683/684
(99 %)
0 diff
(100 %id)
AF152509   .vw 1 to 2712 1 to 2712 K195N N408I A606V tiling clone,   2712/2712
(100 %)
5 diff
(99.9 %id)
AA329824   .vx 1 to 286 1 to 286   tiling clone,   286/286
(100 %)
1 diff
(99.7 %id)
NM_032092.1   .vx 1 to 4317 1 to 4317 exact RefSeq,   4317/4317
(100 %)
0 diff
(100 %id)
DA643682   .vx 79 to 615 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
BX484432   .vx 85 to 814 14 to 744   tiling clone,   731/744
(98 %)
5 diff
(99.4 %id)
DA779181 brain .vx 86 to 646 2 to 565   capped   564/564
(100 %)
7 diff
(98.8 %id)
DA503678 brain .vx 113 to 664 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DR000132 fetal brain .vx 212 to 609 1 to 399       399/403
(99 %)
4 diff
(99.1 %id)
TI_1971554281   .vx 223 to 1382 47 to 1187       1141/1240
(92 %)
22 diff
(98.3 %id)
TI_2194694683   .vx 223 to 1367 47 to 1180       1134/1247
(90 %)
23 diff
(98.2 %id)
TI_2194697683   .vx 230 to 1068 857 to 22       836/1228
(68 %)
0 diff
(100 %id)
AF152504   .vx 259 to 2518 1 to 2260 exact tiling clone,   2260/2262
(99 %)
1 diff
(100.0 %id)
TI_1971555405   .vx 276 to 1327 16 to 1060       1045/1228
(85 %)
9 diff
(99.3 %id)
TI_2194696001   .vx 276 to 1408 17 to 1138       1122/1256
(89 %)
19 diff
(98.5 %id)
TI_1971557013   .vx 418 to 1577 1153 to 7       1147/1266
(90 %)
0 diff
(100 %id)
TI_1971557055   .vx 651 to 1572 918 to 8       911/1135
(80 %)
0 diff
(100 %id)
TI_2194695999   .vx 759 to 1933 18 to 1182       1165/1266
(92 %)
18 diff
(98.6 %id)
BQ683833 melanotic melanoma, cell line, skin .vx 1322 to 2129 23 to 833       811/971
(83 %)
21 diff
(97.9 %id)
BU839246 melanotic melanoma, cell line, skin .vx 1323 to 2032 1 to 720       720/873
(82 %)
13 diff
(98.6 %id)
BQ888770 melanotic melanoma, cell line, skin .vx 1324 to 2169 1 to 855       855/871
(98 %)
17 diff
(98.1 %id)
BQ682137 melanotic melanoma, cell line, skin .vx 1324 to 1606 1 to 283       283/283
(100 %)
1 diff
(99.7 %id)
BX472759   .vy 1 to 584 3 to 584   tiling clone,   584/584
(100 %)
3 diff
(99.5 %id)
BE262503 brain, neuroblastoma .vy 3 to 538 51 to 609       559/610
(91 %)
27 diff
(95.6 %id)
BF206078 brain, neuroblastoma .vy 8 to 758 1 to 745   tiling clone,   745/965
(77 %)
11 diff
(98.9 %id)
BE313302 brain, neuroblastoma .vy 53 to 704 31 to 682       652/683
(95 %)
11 diff
(98.4 %id)
BQ344600 nervous_tumor .vy 563 to 1000 464 to 27       438/464
(94 %)
0 diff
(100 %id)
BQ898192 dorsal root ganglia .vy 579 to 1508 1 to 933   tiling clone,   933/933
(100 %)
22 diff
(97.7 %id)
BI458648 testis .vy 599 to 1316 1 to 718       718/718
(100 %)
11 diff
(98.5 %id)
BF924289 nervous_tumor .vy 613 to 1058 454 to 9     Submitted on the opposite strand 446/454
(98 %)
0 diff
(100 %id)
BQ300372 bladder_tumor .vy 827 to 1304 491 to 12       480/491
(97 %)
0 diff
(100 %id)
BU178359 melanotic melanoma, skin .vy 1066 to 1850 11 to 802       792/838
(94 %)
16 diff
(98.1 %id)
CD615134   .vy 1109 to 1789 1 to 676       676/677
(99 %)
8 diff
(98.9 %id)
CD615133   .vy 1121 to 1871 756 to 2   tiling clone,   755/756
(99 %)
0 diff
(100 %id)
BQ300431 bladder_tumor .vy 1167 to 1297 132 to 1       132/141
(93 %)
1 diff
(99.3 %id)
BG914065 anaplastic oligodendroglioma with 1p/19qloss, brain .vy 1297 to 1945 115 to 755       690/757
(91 %)
24 diff
(96.9 %id)
AL120164 amygdala .vy 1358 to 1844 1 to 487       487/488
(99 %)
3 diff
(99.4 %id)
AW297057   .vy 1387 to 1791 420 to 16   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 405/405
(100 %)
0 diff
(100 %id)
BI041447 nervous_tumor .vy 1628 to 1835 1 to 209       209/209
(100 %)
5 diff
(97.7 %id)
AA324921 brain, cerebellum .vy 1719 to 1950 1 to 232   tiling clone,   232/232
(100 %)
0 diff
(100 %id)
BQ877379 melanotic melanoma, cell line, skin .vz 1 to 691 1 to 698       698/895
(77 %)
14 diff
(98.5 %id)
BU145848 melanotic melanoma, cell line, skin .vz 1 to 769 1 to 777       777/957
(81 %)
14 diff
(98.6 %id)
BU155361 melanotic melanoma, cell line, skin .vz 1 to 866 1 to 875   tiling clone,   875/882
(99 %)
15 diff
(98.3 %id)
BQ684076 melanotic melanoma, cell line, skin .vz 1 to 857 1 to 866       866/870
(99 %)
12 diff
(98.7 %id)
BQ682077 melanotic melanoma, cell line, skin .vz 1 to 750 1 to 761       761/927
(82 %)
11 diff
(98.9 %id)
BU196653 melanotic melanoma, cell line, skin .vz 1 to 896 1 to 904   tiling clone,   904/906
(99 %)
13 diff
(98.6 %id)
BU196681 melanotic melanoma, cell line, skin .vz 1 to 834 1 to 853       853/971
(87 %)
35 diff
(96.4 %id)
BQ680433 melanotic melanoma, cell line, skin .vz 1 to 887 1 to 890   tiling clone,   890/891
(99 %)
9 diff
(99.0 %id)
BQ677045 melanotic melanoma, cell line, skin .vz 1 to 911 1 to 915   tiling clone,   915/923
(99 %)
10 diff
(99.0 %id)
BQ678060 melanotic melanoma, cell line, skin .vz 1 to 804 1 to 811       811/941
(86 %)
17 diff
(98.2 %id)
BQ889764 melanotic melanoma, cell line, skin .vz 1 to 768 1 to 777       777/961
(80 %)
26 diff
(97.3 %id)
BQ680603 melanotic melanoma, cell line, skin .vz 2 to 918 21 to 947 V68G E120K V143G S146A N167K ...     927/955
(97 %)
56 diff
(94.2 %id)
BG819988 anaplastic oligodendroglioma with 1p/19qloss, brain .wa 1 to 732 1 to 732 T118X K177T K182T tiling clone,   732/732
(100 %)
8 diff
(99.0 %id)
BE298070 muscle, rhabdomyosarcoma .wa 21 to 818 1 to 663 R7S S8E G9L L10D V11C ...     620/663
(93 %)
36 diff
(94.6 %id)
BG819974 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 1 to 825 1 to 808 N15T T16R D17T W18G R19V ... tiling clone,   808/810
(99 %)
22 diff
(97.3 %id)
BF528113 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 106 to 825 12 to 726 Q22L A23G Q24P R25E P26T ...     715/726
(98 %)
27 diff
(96.3 %id)
CB991148 placenta, pre-eclamptic placenta .wb 111 to 687 20 to 607 D17N Q84P F85G T86S L87P ...     588/936
(62 %)
38 diff
(96.0 %id)
BI545117 brain, hippocampus .wb 120 to 782 1 to 665 P14S N42T N43T Q44S F45L ...     665/665
(100 %)
13 diff
(98.1 %id)
AL134030 brain .wb 121 to 272 29 to 180       152/180
(84 %)
6 diff
(96.7 %id)
BG910578 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 123 to 822 7 to 744 V2M P3V E4P A5R W6G ... available from MGC,   716/927
(77 %)
27 diff
(97.1 %id)
BG334867 melanotic melanoma, skin .wb 124 to 866 1 to 735 exact     735/968
(75 %)
16 diff
(98.4 %id)
TI_44001163   .wb 125 to 782 88 to 747 P14S N42T N43T Q44S F45L ...     660/747
(88 %)
13 diff
(98.3 %id)
BG765565 melanotic melanoma, high MDR (cell line), skin .wb 127 to 904 1 to 779 exact     779/782
(99 %)
10 diff
(98.8 %id)
BC006439 Muscle, rhabdomyosarcoma .wb 128 to 2445 1 to 2318 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2318/2318
(100 %)
0 diff
(100 %id)
NM_032403.1   .wb 128 to 2453 1 to 2326 exact RefSeq,   2326/2326
(100 %)
0 diff
(100 %id)
BE019422 muscle, rhabdomyosarcoma .wb 129 to 644 1 to 515   available from MGC,   515/515
(100 %)
1 diff
(99.9 %id)
BC027451 Brain, anaplastic oligodendroglioma with1p/19q loss .wb 130 to 2419 1 to 2290 exact available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2290/2290
(100 %)
1 diff
(100.0 %id)
BF530660 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 134 to 897 5 to 752 exact     748/1103
(67 %)
30 diff
(97.3 %id)
BG911609 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 134 to 736 5 to 616 K112T D114R G115W K116Q A117G ...     612/616
(99 %)
20 diff
(96.8 %id)
BX346373   .wb 137 to 1185 1 to 1040 exact     1040/1040
(100 %)
24 diff
(97.7 %id)
BE892830 melanotic melanoma, skin .wb 139 to 829 1 to 683 exact     683/777
(87 %)
14 diff
(98.2 %id)
BI752483 brain .wb 140 to 887 1 to 743 exact     743/747
(99 %)
8 diff
(99.0 %id)
TI_57219163   .wb 140 to 887 36 to 778 exact     743/782
(95 %)
13 diff
(98.4 %id)
BG911893 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 142 to 823 1 to 688 F20Y S21L Q22S A23G Q24P ...     688/865
(79 %)
29 diff
(96.7 %id)
BI554195 anaplastic oligodendroglioma with 1p/19qloss, brain .wb 143 to 981 10 to 841 F45L D46T T47Q E48R M49C ... available from MGC,   832/841
(98 %)
30 diff
(96.5 %id)
TI_44384880   .wb 143 to 981 55 to 886 F45L D46T T47Q E48R M49C ...     832/841
(98 %)
30 diff
(96.5 %id)
BC063437 Brain, anaplastic oligodendroglioma with1p/19q loss .wb 144 to 2451 1 to 2308 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2308/2308
(100 %)
1 diff
(100.0 %id)
BG169782 hypernephroma, cell line, Kidney .wb 152 to 855 1 to 695 S128V K130Q K131E E132G K133E ...     695/994
(69 %)
26 diff
(97.4 %id)
CV029975 mixed .wb 243 to 646 1 to 404       404/574
(70 %)
1 diff
(99.9 %id)
BI914779 brain .wc 1 to 812 1 to 816 exact tiling clone,   816/817
(99 %)
7 diff
(99.2 %id)
TI_57244117   .wc 1 to 812 29 to 844 exact     816/845
(96 %)
14 diff
(98.4 %id)
CN333814 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .wd 1 to 632 1 to 632 exact tiling clone,   632/632
(100 %)
1 diff
(99.9 %id)
F07529 brain, total brain .we 1 to 224 1 to 224   tiling clone,   224/224
(100 %)
0 diff
(100 %id)
H96754 melanocyte .we 130 to 378 1 to 249   tiling clone,   249/249
(100 %)
2 diff
(99.2 %id)
F08733 brain, total brain .we 154 to 467 1 to 314   tiling clone,   314/314
(100 %)
3 diff
(99.1 %id)
CA427774 Bone, Subchondral Bone .we 405 to 1116 731 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 713/713
(100 %)
2 diff
(99.8 %id)
F05019 brain, total brain .we 893 to 1116 224 to 1       224/224
(100 %)
0 diff
(100 %id)
F04936 brain, total brain .we 894 to 1116 223 to 1       223/223
(100 %)
0 diff
(100 %id)
H96219 melanocyte .we 1038 to 1119 82 to 1   tiling clone,   82/82
(100 %)
0 diff
(100 %id)
DA549378   .wf 1 to 582 2 to 583   tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
CF593989 Human Placenta, placenta .wf 7 to 668 28 to 700 L34S N36Q Q37P P38A S39Q ... tiling clone,   673/843
(79 %)
24 diff
(97.2 %id)
DA165861 amygdala .wg 1 to 580 2 to 582   tiling clone, capped   581/581
(100 %)
2 diff
(99.7 %id)
AW275037 pooled germ cell tumors .wh-u 1 to 541 541 to 1 T44I tiling clone,   541/541
(100 %)
1 diff
(99.9 %id)
AY358946   Gene PCDHG_, variant not shown         This clone was ignored    
AK026188   Gene PCDHG_, variant not shown       available from FLJ, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
L11373 brain Gene PCDHG_, variant not shown         Suspected internal deletion, this clone was ignored    
DR001283 fetal brain Gene PCDHG_, variant not shown              
TI_891527110   Gene PCDHG_, variant not shown         This clone was ignored    
TI_891527126   Gene PCDHG_, variant not shown         Suspected internal deletion, this clone was ignored    
TI_891530152   Gene PCDHG_, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
TI_891527941   Gene PCDHG_, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
TI_891530153   Gene PCDHG_, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
TI_2194699113   Gene PCDHG_, variant not shown         Suspected internal deletion, this clone was ignored    
49 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb-u, .vc-u, .vd-u, .ve-u, .vf-u, .vg-u, .vh-u, .vi-u, .vj-u, .vk-u, .vl-u, .vm-u, .vn-u, .vo-u, .vp-u, .vq-u, .vr-u, .vs-u, .vt-u, .vu-u, .vv-u, .vw, .vx, .vy, .vz, .wa, .wb, .wc, .wd, .we, .wf, .wg, .wh-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC