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Gene PACSIN3andARFGAP2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
609 representative clones for gene PACSIN3andARFGAP2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC413834 trachea .a 1 to 513 2 to 514   tiling clone,   514/514
(100 %)
0 diff
(100 %id)
DB166013 thyroid gland .a 2 to 747 2 to 745   capped   744/748
(99 %)
7 diff
(99.1 %id)
DB166470 thyroid gland .a 4 to 746 2 to 744   capped   743/814
(91 %)
8 diff
(99.1 %id)
AL544903 placenta, Placenta Cot 25-normalized .a 10 to 1004 1 to 983   tiling clone,   985/986
(99 %)
27 diff
(97.3 %id)
AL542314 placenta .a 17 to 878 1 to 860       860/980
(87 %)
12 diff
(98.8 %id)
CD672017 eye, Iris .a 31 to 642 1 to 612     Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 612/612
(100 %)
0 diff
(100 %id)
AL569363 placenta .a 1688 to 2782 1084 to 2   tiling clone,   1083/1084
(99 %)
0 diff
(100 %id)
DB382524 thyroid gland .a 2242 to 2813 572 to 1       572/573
(99 %)
13 diff
(97.8 %id)
DB381921 thyroid gland .a 2256 to 2801 543 to 1       543/544
(99 %)
17 diff
(96.9 %id)
DC426910 trachea .a 2278 to 2813 536 to 1   tiling clone,   536/541
(99 %)
1 diff
(99.9 %id)
AL570851 placenta, Placenta Cot 25-normalized .a 2342 to 2777 443 to 7       937/980
(95 %)
16 diff
(98.4 %id)
CD672016 eye, Iris .a 2551 to 2813 280 to 18   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 263/263
(100 %)
1 diff
(99.7 %id)
DC404226 testis .b 1 to 580 1 to 580   tiling clone,   580/580
(100 %)
2 diff
(99.7 %id)
DC365262   .b 30 to 595 1 to 565       565/566
(99 %)
2 diff
(99.7 %id)
DC316472 amygdala .b 57 to 634 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC346098 tongue, tumor tissue .b 59 to 633 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DC370842   .b 72 to 589 1 to 518       518/518
(100 %)
0 diff
(100 %id)
DA387454 thalamus .b 89 to 677 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA564171 heart .b 89 to 667 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BP201486 amygdala .b 92 to 672 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DC370709   .b 92 to 573 1 to 482       482/482
(100 %)
0 diff
(100 %id)
DA203862 brain .b 93 to 651 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB061909 testis .b 93 to 638 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DC406699 thymus .b 95 to 621 1 to 528       528/528
(100 %)
6 diff
(98.9 %id)
DB147533 thymus .b 98 to 643 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DC337081 substantia nigra .b 99 to 629 1 to 531       531/531
(100 %)
0 diff
(100 %id)
DC383122 Prostate .b 99 to 621 1 to 523       523/523
(100 %)
0 diff
(100 %id)
DC392744 breast, tumor tissue .b 99 to 628 1 to 531       531/531
(100 %)
1 diff
(99.9 %id)
DA085963 cerebellum .b 100 to 640 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA157801 amygdala .b 100 to 640 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA352071 substantia nigra .b 100 to 643 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
TI_57243361   .b 100 to 809 73 to 783       711/970
(73 %)
12 diff
(98.8 %id)
DA741948   .b 100 to 644 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA837458 placenta .b 100 to 640 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
TI_44342795   .b 101 to 869 142 to 909       768/1003
(76 %)
14 diff
(98.7 %id)
DC370606   .b 101 to 613 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
DA880441 Prostate .b 102 to 642 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
TI_57148774   .b 106 to 874 29 to 797       769/797
(96 %)
5 diff
(99.4 %id)
TI_57232552   .b 108 to 875 27 to 795       769/795
(96 %)
1 diff
(99.9 %id)
BI907360 leukocyte .b 109 to 875 1 to 768       768/768
(100 %)
1 diff
(99.9 %id)
BC030148 Eye, retinoblastoma .b 110 to 2869 1 to 2760 exact available from MGC, AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 2760/2760
(100 %)
1 diff
(100.0 %id)
AL583075 B cells from Burkitt lymphoma .b 110 to 1060 1 to 948       948/948
(100 %)
20 diff
(97.9 %id)
NM_032389.3   .b 110 to 2869 1 to 2760 exact RefSeq, AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 2760/2760
(100 %)
1 diff
(100.0 %id)
CR614461 B cells (Ramos cell line) Cot 25-normalized .b 111 to 2833 1 to 2723 exact tiling clone,   2723/2723
(100 %)
0 diff
(100 %id)
TI_59381529   .b 111 to 834 104 to 829       685/726
(94 %)
19 diff
(97.4 %id)
BI764701 pooled colon, kidney, stomach .b 112 to 825 1 to 714       714/714
(100 %)
0 diff
(100 %id)
TI_57152809   .b 112 to 825 67 to 780       714/780
(91 %)
0 diff
(100 %id)
BQ934475 large cell carcinoma, lung .b 113 to 1005 1 to 899       899/903
(99 %)
8 diff
(99.2 %id)
CX166661 human embryonic stem cells differentiated toan early endodermal cell type .b 114 to 816 1 to 703       703/703
(100 %)
0 diff
(100 %id)
BQ233614 leiomyosarcoma, uterus .b 115 to 1064 1 to 955       953/961
(99 %)
13 diff
(98.7 %id)
AK027482   .b 117 to 2869 1 to 2753 T40M N107S available from FLJ,   2753/2753
(100 %)
7 diff
(99.8 %id)
BC036823 Cervix, carcinoma .b 119 to 2869 12 to 2762 R339H available from MGC, AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 2751/2751
(100 %)
3 diff
(99.9 %id)
TI_57151713   .b 119 to 957 36 to 885       850/887
(95 %)
22 diff
(97.6 %id)
TI_57182360   .b 119 to 884 28 to 795       768/795
(96 %)
9 diff
(98.9 %id)
TI_57187752   .b 119 to 886 56 to 831       776/777
(99 %)
21 diff
(97.3 %id)
DA732196   .b 119 to 730 2 to 613   fully sequenced, capped   612/612
(100 %)
0 diff
(100 %id)
BM455272 lymph, lymphoma, cell line .b 122 to 934 1 to 812       812/1078
(75 %)
24 diff
(97.8 %id)
CX753485 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 122 to 808 1 to 687     Submitted on the opposite strand 687/687
(100 %)
0 diff
(100 %id)
TI_57166552   .b 127 to 967 35 to 876       842/879
(95 %)
9 diff
(99.0 %id)
BI833473 pooled pancreas and spleen .b 131 to 967 1 to 838       838/841
(99 %)
9 diff
(99.0 %id)
AL834337 amygdala .b 134 to 2868 1 to 2735   available from DKFZ, AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 2735/2735
(100 %)
2 diff
(100.0 %id)
BQ228732 melanotic melanoma, skin .b 136 to 934 1 to 803       803/840
(95 %)
7 diff
(99.2 %id)
TI_154196207   .b 147 to 935 15 to 801       787/1043
(75 %)
17 diff
(98.4 %id)
TI_154197839   .b 147 to 1055 98 to 999       901/988
(91 %)
32 diff
(96.8 %id)
BM480422 duodenal adenocarcinoma, cell line, small intestine .b 159 to 1196 1 to 1044       1044/1044
(100 %)
24 diff
(97.8 %id)
AB073358   .b 243 to 2871 1 to 2629   tiling clone,   2629/2632
(99 %)
4 diff
(99.9 %id)
DA736948   .b 260 to 1062 2 to 806   capped   805/805
(100 %)
11 diff
(98.7 %id)
BP344658 synovial membrane .b 330 to 911 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA601980   .b 345 to 899 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BQ228103 melanotic melanoma, skin .b 412 to 1226 1 to 819       819/852
(96 %)
4 diff
(99.6 %id)
DA707762   .b 440 to 1021 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
CV575777 cornea, eye .b 442 to 1063 1 to 622       622/622
(100 %)
0 diff
(100 %id)
DA466966 cord Blood .b 444 to 1018 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA880612   .b 473 to 1263 2 to 805   capped   804/821
(97 %)
14 diff
(98.3 %id)
CR979170 T-Lymphocytes .b 545 to 1455 1 to 913       913/916
(99 %)
4 diff
(99.6 %id)
AL559636 B cells (Ramos cell line), B cells from Burkitt lymphoma .b 560 to 1630 1 to 1067       1067/1070
(99 %)
8 diff
(99.3 %id)
TI_151794449   .b 605 to 1252 192 to 846       657/1193
(55 %)
18 diff
(98.5 %id)
BX349291   .b 614 to 1464 1 to 858       856/928
(92 %)
18 diff
(98.1 %id)
BQ955225 large cell carcinoma, lung .b 616 to 1445 1 to 842       842/890
(94 %)
17 diff
(98.1 %id)
DB363615   .b 700 to 979 278 to 1   fully sequenced,   278/278
(100 %)
1 diff
(99.7 %id)
DA475344   .b 731 to 1286 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
TI_59384823   .b 775 to 1529 110 to 869       760/761
(99 %)
10 diff
(98.7 %id)
AI751406 Bone, Hip .b 788 to 1060 8 to 280       273/280
(97 %)
0 diff
(100 %id)
AL559635 B cells (Ramos cell line), B cells from Burkitt lymphoma .b 1803 to 2839 1034 to 1       1034/1092
(94 %)
17 diff
(98.5 %id)
AW160901 brain, frontal lobe .c 1 to 416 1 to 416       416/417
(99 %)
2 diff
(99.6 %id)
AW163450 brain, frontal lobe .c 1 to 356 1 to 356       356/357
(99 %)
3 diff
(99.2 %id)
AW163692 brain, frontal lobe .c 1 to 534 1 to 534   tiling clone,   534/534
(100 %)
0 diff
(100 %id)
AW161658 brain, frontal lobe .c 2188 to 2741 559 to 6   tiling clone,   554/559
(99 %)
0 diff
(100 %id)
TI_151771336   .c 2213 to 2742 79 to 607       529/596
(88 %)
6 diff
(99.0 %id)
AW157575 brain, frontal lobe .c 2295 to 2741 453 to 7       447/453
(98 %)
0 diff
(100 %id)
AW163090 brain, frontal lobe .c 2298 to 2741 449 to 6   tiling clone,   444/449
(98 %)
0 diff
(100 %id)
DC351696 brain .d 1 to 545 1 to 545   tiling clone,   545/545
(100 %)
0 diff
(100 %id)
AK301785 testis .d 49 to 1613 1 to 1565   tiling clone,   1565/1565
(100 %)
2 diff
(99.9 %id)
DC395280 testis .d 49 to 595 1 to 547       547/547
(100 %)
0 diff
(100 %id)
NM_001184975.1   .e 1 to 2011 1 to 2011 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2011/2011
(100 %)
0 diff
(100 %id)
BP332001 renal proximal tubule .e 1 to 579 1 to 579   tiling clone,   579/579
(100 %)
0 diff
(100 %id)
AK000577   .e 2 to 1560 1 to 1559   tiling clone, available from FLJ,   1559/1559
(100 %)
3 diff
(99.9 %id)
AK300968 small intestine .e 7 to 1501 1 to 1488       1488/1488
(100 %)
23 diff
(98.5 %id)
DC388569 small intestine .e 7 to 552 1 to 547       547/547
(100 %)
2 diff
(99.7 %id)
BI601317 brain, hypothalamus .f 1 to 730 8 to 737   tiling clone,   730/739
(98 %)
3 diff
(99.6 %id)
TI_45210643   .f 1 to 730 89 to 818       730/820
(89 %)
3 diff
(99.7 %id)
NM_016223.4   .f 1 to 1882 1 to 1882 exact RefSeq, AAA   1882/1882
(100 %)
0 diff
(100 %id)
CN363291 embryonic stem cells, cell lines H1, H7, andH9 .f 7 to 353 1 to 349       349/349
(100 %)
15 diff
(95.8 %id)
BX340710   .f 7 to 964 1 to 957       957/957
(100 %)
5 diff
(99.5 %id)
CR613894 Neuroblastoma Cot 25-normalized .f 17 to 1861 1 to 1846 E301A W302L S303V D305G T306H ...     1846/1846
(100 %)
1 diff
(100.0 %id)
CR595171 Placenta Cot 25-normalized .f 20 to 1863 1 to 1845 E301A W302L S303V D305G T306H ...     1845/1845
(100 %)
1 diff
(100.0 %id)
CF552413 Pooled muscle (cardiac and skeletal) .f 21 to 887 19 to 896       876/905
(96 %)
32 diff
(96.5 %id)
CR600161 Neuroblastoma Cot 25-normalized .f 22 to 1883 1 to 1863 E301A W302L S303V D305G T306H ...     1863/1863
(100 %)
1 diff
(100.0 %id)
AL526721 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .f 22 to 887 1 to 863   fully sequenced,   863/863
(100 %)
4 diff
(99.6 %id)
BI599677 brain, hypothalamus .f 23 to 757 6 to 738       733/739
(99 %)
6 diff
(99.2 %id)
BI668190 brain, hypothalamus .f 23 to 858 6 to 839       834/848
(98 %)
16 diff
(98.2 %id)
TI_45212944   .f 23 to 757 89 to 821       733/822
(89 %)
6 diff
(99.3 %id)
TI_44346332   .f 23 to 858 90 to 923       834/932
(89 %)
16 diff
(98.3 %id)
BU170837 eye, retinoblastoma .f 24 to 822 1 to 800       800/890
(89 %)
12 diff
(98.7 %id)
AF130979   .f 27 to 1882 28 to 1883 A61V AAA   1856/1883
(98 %)
1 diff
(100.0 %id)
TI_57150912   .f 27 to 662 41 to 688       652/1001
(65 %)
27 diff
(97.4 %id)
AL525414 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .f 29 to 915 14 to 889   fully sequenced,   876/889
(98 %)
13 diff
(98.6 %id)
BX343961 Placenta Cot 25-normalized .f 30 to 854 10 to 859       658/859
(76 %)
25 diff
(97.1 %id)
BX379825 Placenta Cot 25-normalized .f 30 to 1103 10 to 1073       1064/1082
(98 %)
23 diff
(97.9 %id)
BM809801 astrocytoma grade IV, cell line, brain .f 31 to 593 26 to 590       565/1255
(45 %)
16 diff
(98.8 %id)
DB478223 hippocampus .f 33 to 527 1 to 495       495/495
(100 %)
0 diff
(100 %id)
AL544355 placenta, Placenta Cot 25-normalized .f 35 to 1078 21 to 1064       1044/1064
(98 %)
19 diff
(98.3 %id)
BX364814 Placenta Cot 25-normalized .f 35 to 1034 21 to 1017       997/1017
(98 %)
11 diff
(99.0 %id)
BE895596 melanotic melanoma, skin .f 39 to 584 1 to 563       563/563
(100 %)
17 diff
(97.0 %id)
BG762641 melanotic melanoma, high MDR (cell line), skin .f 52 to 758 1 to 712       712/712
(100 %)
10 diff
(98.6 %id)
AK300658 skeletal muscle .f 53 to 1450 1 to 1398       1398/1591
(87 %)
3 diff
(99.9 %id)
BC011889 Skin, melanotic melanoma. .f 53 to 1888 1 to 1836 exact available from MGC, AAA   1836/1836
(100 %)
1 diff
(100.0 %id)
BP215693 corpus callosum .f 53 to 635 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA895528 skeletal muscle .f 53 to 604 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA893565 skeletal muscle .f 54 to 586 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA895935 skeletal muscle .f 54 to 612 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA896864 skeletal muscle .f 54 to 586 2 to 534   capped   533/533
(100 %)
4 diff
(99.3 %id)
CN363289 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 57 to 776 10 to 729       720/729
(98 %)
0 diff
(100 %id)
AF149825   .f 60 to 1888 1 to 1825 exact tiling clone,   1829/1825
(100 %)
7 diff
(99.7 %id)
CN363293 embryonic stem cells, cell lines H1, H7, andH9 .f 61 to 445 1 to 385       385/385
(100 %)
1 diff
(99.8 %id)
BI822603 pooled brain, lung, testis .f 61 to 642 1 to 578       578/578
(100 %)
6 diff
(99.0 %id)
TI_57198698   .f 61 to 642 30 to 607       578/607
(95 %)
1 diff
(99.9 %id)
BM924792 pooled colon, kidney, stomach .f 62 to 1002 25 to 964       940/1112
(84 %)
18 diff
(98.4 %id)
DN997541 breast cancer, Mammary gland (cancer tissue) .f 62 to 609 1 to 550       550/550
(100 %)
8 diff
(98.6 %id)
AL530220 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .f 64 to 995 1 to 932   fully sequenced,   932/932
(100 %)
6 diff
(99.4 %id)
AF242530   .f 65 to 1882 1 to 1818 exact AAA   1818/1818
(100 %)
0 diff
(100 %id)
CR601247 Neuroblastoma Cot 50-normalized .f 65 to 1858 1 to 1795 E301A W302L S303V D305G T306H ...     1795/1795
(100 %)
1 diff
(100.0 %id)
CR606050 Placenta Cot 25-normalized .f 65 to 1871 1 to 1808 E301A W302L S303V D305G T306H ...     1808/1808
(100 %)
1 diff
(100.0 %id)
BX324873 Placenta Cot 25-normalized .f 65 to 966 1 to 902       902/902
(100 %)
5 diff
(99.5 %id)
BX381951 Placenta Cot 25-normalized .f 65 to 981 1 to 911       911/920
(99 %)
34 diff
(96.4 %id)
AL553973 placenta, Placenta Cot 25-normalized .f 65 to 1002 1 to 940   fully sequenced,   940/940
(100 %)
9 diff
(99.1 %id)
BM545612 ovary (pool of 3) .f 65 to 800 1 to 743       743/1035
(71 %)
19 diff
(98.2 %id)
CN363292 embryonic stem cells, cell lines H1, H7, andH9 .f 66 to 611 1 to 546       546/546
(100 %)
0 diff
(100 %id)
AA171908   .f 69 to 456 1 to 385       387/386
(100 %)
11 diff
(97.2 %id)
BE727121 melanotic melanoma, skin .f 71 to 903 1 to 833       833/833
(100 %)
4 diff
(99.6 %id)
BC007914 Uterus, leiomyosarcoma .f 72 to 1882 1 to 1811 exact available from MGC, AAA   1811/1811
(100 %)
0 diff
(100 %id)
CN363288 embryonic stem cells, cell lines H1, H7, andH9 .f 72 to 762 9 to 699       691/699
(98 %)
0 diff
(100 %id)
BE409363 choriocarcinoma, placenta .f 72 to 767 1 to 696       696/746
(93 %)
14 diff
(98.2 %id)
CB266538 adipose .f 74 to 476 1 to 403       403/403
(100 %)
0 diff
(100 %id)
BQ686612 ductal carcinoma, cell line, Pancreas .f 74 to 816 1 to 746   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 746/926
(80 %)
18 diff
(98.1 %id)
BX446394 placenta .f 75 to 805 1 to 730       730/730
(100 %)
49 diff
(93.3 %id)
AW328241 cervix .f 272 to 781 11 to 520       510/520
(98 %)
1 diff
(99.9 %id)
AL526687 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .f 857 to 1880 1021 to 5   fully sequenced,   1017/1021
(99 %)
2 diff
(99.9 %id)
AL525370 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .f 885 to 1861 973 to 1   fully sequenced,   973/973
(100 %)
19 diff
(98.1 %id)
AL563672 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .f 963 to 1848 896 to 11   fully sequenced,   886/896
(98 %)
5 diff
(99.5 %id)
AL576828 placenta, Placenta Cot 25-normalized .f 963 to 1871 902 to 1   fully sequenced,   902/902
(100 %)
5 diff
(99.5 %id)
TI_149310730   .f 992 to 1888 977 to 92   AAA   886/948
(93 %)
19 diff
(98.0 %id)
BX343960 Placenta Cot 25-normalized .f 994 to 1546 938 to 388       551/938
(58 %)
3 diff
(99.7 %id)
CB163548 Liver .f 1087 to 1607 1 to 521       521/521
(100 %)
0 diff
(100 %id)
TI_149315051   .f 1130 to 1897 850 to 92   AAA   759/873
(86 %)
12 diff
(98.7 %id)
BM705165 eye, RPE and Choroid .f 1160 to 1600 1 to 441   fully sequenced,   441/441
(100 %)
0 diff
(100 %id)
BM704415 eye, RPE and Choroid .f 1166 to 1723 1 to 558       558/558
(100 %)
0 diff
(100 %id)
BU688911 lung .f 1175 to 1888 724 to 13   AAA   712/712
(100 %)
2 diff
(99.8 %id)
BE902863 choriocarcinoma, placenta .f 1181 to 1872 1 to 689       689/692
(99 %)
6 diff
(99.2 %id)
AW193981 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f 1224 to 1898 684 to 8       677/684
(98 %)
11 diff
(98.4 %id)
BQ003615 Chondrosarcoma, Left Pelvis .f 1224 to 1893 672 to 4       669/672
(99 %)
1 diff
(99.9 %id)
CN479159 lung, Primary Lung Cystic Fibrosis EpithelialCells .f 1239 to 1897 677 to 19   AAA   659/659
(100 %)
0 diff
(100 %id)
BU630871 cell lines, Chondrosarcoma .f 1251 to 1897 662 to 19   AAA   644/646
(99 %)
3 diff
(99.6 %id)
BQ549966 insulinoma, Pancreas .f 1261 to 1459 1 to 199       199/202
(98 %)
10 diff
(95.1 %id)
BE930591 placenta_normal .f 1262 to 1488 245 to 19       227/245
(92 %)
0 diff
(100 %id)
AA218860 brain, neuroepithelial cells .f 1271 to 1897 652 to 9       644/654
(98 %)
17 diff
(97.5 %id)
AA452508   .f 1315 to 1603 1 to 288   fully sequenced,   288/288
(100 %)
3 diff
(99.0 %id)
TI_154102613   .f 1337 to 1897 642 to 82   AAA   561/788
(71 %)
6 diff
(99.3 %id)
CA445583 Chondrosarcoma, Left Pubic Bone .f 1347 to 1897 569 to 19   AAA   551/551
(100 %)
2 diff
(99.7 %id)
H24638 breast .f 1359 to 1617 1 to 258       258/258
(100 %)
1 diff
(99.7 %id)
AW439879 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f 1365 to 1897 533 to 1       533/540
(98 %)
12 diff
(97.8 %id)
BM930933 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1368 to 1880 1 to 516   fully sequenced,   516/516
(100 %)
3 diff
(99.5 %id)
BM998770 lung, Metastatic Chondrosarcoma .f 1371 to 1897 545 to 19   AAA   527/531
(99 %)
2 diff
(99.7 %id)
AA576536 breast, breast tumor .f 1376 to 1896 521 to 1       521/521
(100 %)
8 diff
(98.5 %id)
BI044831 ovary .f 1379 to 1772 390 to 4       387/402
(96 %)
24 diff
(94.1 %id)
BM684444 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1416 to 1900 485 to 1   fully sequenced,   485/485
(100 %)
3 diff
(99.4 %id)
AA587394 colon, colon tumor RER+ .f 1422 to 1898 483 to 7       477/483
(98 %)
0 diff
(100 %id)
DB546869 hippocampus .f 1437 to 1897 1 to 461     Submitted on the opposite strand 461/461
(100 %)
0 diff
(100 %id)
BM817490 Ascites, stomach .f 1437 to 1804 1 to 368       368/368
(100 %)
4 diff
(99.0 %id)
CB052926 leiomyosarcoma, soft tissue .f 1448 to 1879 9 to 438   fully sequenced,   430/438
(98 %)
0 diff
(100 %id)
AW362737 colon .f 1450 to 1625 1 to 174       174/186
(93 %)
4 diff
(97.9 %id)
BE043012 carcinoid, lung .f 1455 to 1848 1 to 394     Submitted on the opposite strand 394/394
(100 %)
0 diff
(100 %id)
AI075695   .f 1457 to 1893 438 to 2       437/438
(99 %)
0 diff
(100 %id)
AI735027 colon .f 1459 to 1897 439 to 1       439/450
(97 %)
0 diff
(100 %id)
AI749755 colon .f 1459 to 1894 439 to 4       436/504
(86 %)
0 diff
(100 %id)
AW206358   .f 1466 to 1897 449 to 18   AAA   432/432
(100 %)
1 diff
(99.8 %id)
F25077 pectoral muscle (after mastectomy) .f 1467 to 1839 1 to 373       373/373
(100 %)
2 diff
(99.5 %id)
BU754464 placenta .f 1469 to 1897 447 to 19   AAA   429/429
(100 %)
4 diff
(99.1 %id)
BG338716 leiomyosarcoma cell line, uterus .f 1470 to 1893 1 to 424   AAA   424/462
(91 %)
4 diff
(99.2 %id)
BG338871 leiomyosarcoma cell line, uterus .f 1470 to 1891 1 to 424   AAA   424/424
(100 %)
8 diff
(98.2 %id)
F26225 pectoral muscle (after mastectomy) .f 1470 to 1784 1 to 315       315/315
(100 %)
0 diff
(100 %id)
BX280055 brain, hypothalamus .f 1485 to 1898 439 to 26     Submitted on the opposite strand 414/439
(94 %)
0 diff
(100 %id)
CB052925 leiomyosarcoma, soft tissue .f 1488 to 1897 433 to 24   fully sequenced, AAA   410/410
(100 %)
0 diff
(100 %id)
AI741698 pooled .f 1490 to 1888 397 to 1       397/397
(100 %)
6 diff
(98.5 %id)
AI073515 pooled .f 1499 to 1898 405 to 6       400/405
(98 %)
0 diff
(100 %id)
AW328242 cervix .f 1502 to 1888 420 to 34   AAA   387/387
(100 %)
2 diff
(99.5 %id)
AI283940 esophagus, squamous cell carcinoma .f 1506 to 1898 398 to 6       393/398
(98 %)
0 diff
(100 %id)
AI828816 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .f 1508 to 1897 407 to 18   AAA   390/392
(99 %)
2 diff
(99.5 %id)
AA171893   .f 1530 to 1887 360 to 1       417/452
(92 %)
14 diff
(97.0 %id)
AI280249 placenta .f 1531 to 1893 364 to 2       363/364
(99 %)
0 diff
(100 %id)
AI826261 normal prostate, Prostate .f 1535 to 1897 363 to 1       363/363
(100 %)
0 diff
(100 %id)
AI567379 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .f 1553 to 1894 342 to 1       342/342
(100 %)
0 diff
(100 %id)
AA350150 brain .f 1565 to 1897 333 to 1       333/333
(100 %)
0 diff
(100 %id)
BU734438 eye, RPE and Choroid .f 1570 to 1886 337 to 21   fully sequenced,   317/337
(94 %)
0 diff
(100 %id)
AA454093   .f 1573 to 1894 322 to 1   fully sequenced,   322/322
(100 %)
1 diff
(99.7 %id)
AI354257 Kidney, renal cell tumor .f 1577 to 1888 312 to 1       312/312
(100 %)
0 diff
(100 %id)
AI251129 adenocarcinoma, Pancreas .f 1580 to 1898 326 to 8       319/326
(97 %)
0 diff
(100 %id)
AW129660 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f 1585 to 1897 328 to 15   AAA   314/314
(100 %)
5 diff
(98.5 %id)
EC542824 Prostate .f 1590 to 1701 1 to 111       111/111
(100 %)
2 diff
(98.2 %id)
AI357160 pooled germ cell tumors .f 1603 to 1895 296 to 4       293/296
(98 %)
0 diff
(100 %id)
F36700 pectoral muscle (after mastectomy) .f 1615 to 1868 1 to 254       254/254
(100 %)
2 diff
(99.3 %id)
F26293 pectoral muscle (after mastectomy) .f 1620 to 1885 1 to 265       265/265
(100 %)
1 diff
(99.7 %id)
BG178880 adenocarcinoma, cell line, Prostate .f 1624 to 1882 1 to 259   AAA   259/259
(100 %)
2 diff
(99.3 %id)
AI270014 esophagus, squamous cell carcinoma .f 1645 to 1888 244 to 1       244/244
(100 %)
0 diff
(100 %id)
AI952189 lung, two pooled squamous cell carcinomas .f 1655 to 1898 245 to 1       245/412
(59 %)
1 diff
(99.8 %id)
BU599768 mixed (pool of 40 RNAs) .f 1663 to 1897 1 to 235       235/272
(86 %)
1 diff
(99.7 %id)
AA834233 Kidney, kidney tumor .f 1666 to 1882 238 to 22   AAA   217/217
(100 %)
0 diff
(100 %id)
AI689497 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f 1671 to 1898 230 to 3       228/230
(99 %)
0 diff
(100 %id)
AI688448 colon .f 1695 to 1890 196 to 1       196/196
(100 %)
0 diff
(100 %id)
F17480 pectoral muscle (after mastectomy) .f 1697 to 1895 1 to 199       199/199
(100 %)
5 diff
(97.5 %id)
Z38509 brain, total brain .f 1731 to 1897 167 to 1       167/167
(100 %)
0 diff
(100 %id)
AW273866 lung, two pooled squamous cell carcinomas .f 1778 to 1898 121 to 1       121/121
(100 %)
0 diff
(100 %id)
FN099470 breast carcinoma .f 1785 to 1892 104 to 2     Submitted on the opposite strand 103/113
(91 %)
0 diff
(100 %id)
BF940735 fibrotheoma, ovary .f 1869 to 2387 519 to 1   tiling clone,   519/519
(100 %)
0 diff
(100 %id)
DB230068 trachea .f 1918 to 2490 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA226803 brain .f 1925 to 2440 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
DA797181 brain .f 1957 to 2294 2 to 339   capped   338/338
(100 %)
0 diff
(100 %id)
TI_154196556   .f 2039 to 2644 15 to 618       604/991
(60 %)
39 diff
(96.1 %id)
BF513023   .f 2381 to 2747 1 to 367     Submitted on the opposite strand 367/367
(100 %)
4 diff
(99.0 %id)
BF513265   .f 2381 to 2794 1 to 414   tiling clone, Submitted on the opposite strand 414/414
(100 %)
4 diff
(99.1 %id)
DB108890 thymus .f 2542 to 3113 2 to 574   tiling clone, capped   573/575
(99 %)
2 diff
(99.7 %id)
AI762066 colon, colon tumor, RER+ .f 2588 to 3000 16 to 429   tiling clone, Submitted on the opposite strand 414/429
(96 %)
0 diff
(100 %id)
NM_001184974.1   .g 1 to 1878 1 to 1878 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 1878/1878
(100 %)
0 diff
(100 %id)
BI762537 pooled colon, kidney, stomach .g 32 to 791 1 to 788   tiling clone,   785/956
(82 %)
47 diff
(95.1 %id)
CR624285 HeLa cells Cot 25-normalized .g 52 to 1862 1 to 1812 E301A W302L S303V D305G T306H ... tiling clone,   1812/1812
(100 %)
1 diff
(100.0 %id)
AL555726 placenta .g 52 to 1083 1 to 1031       1031/1031
(100 %)
8 diff
(99.3 %id)
DA894964 skeletal muscle .g 111 to 669 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA897378 skeletal muscle .g 128 to 656 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
TI_1948240332   .g 210 to 1100 129 to 1013       885/1345
(65 %)
19 diff
(98.6 %id)
TI_1948240596   .g 210 to 991 119 to 900       780/1446
(53 %)
72 diff
(95.1 %id)
TI_1948240888   .g 210 to 1246 128 to 1144       1017/1340
(75 %)
41 diff
(97.0 %id)
TI_1948240889   .g 210 to 1247 123 to 1156       1034/1341
(77 %)
39 diff
(97.1 %id)
EL733320 mixed .g 211 to 848 1 to 638       638/638
(100 %)
0 diff
(100 %id)
DR159590 human embryonic stem cells differentiated toan early endodermal cell type .g 302 to 1067 1 to 766       766/766
(100 %)
0 diff
(100 %id)
AV645750 corresponding non cancerous liver tissue .g 308 to 1041 1 to 734     Submitted on the opposite strand 734/735
(99 %)
1 diff
(99.9 %id)
BQ070295 brain, neuroblastoma, cell line .g 324 to 1244 1 to 925       925/997
(92 %)
15 diff
(98.5 %id)
BQ890249 brain, neuroblastoma, cell line .g 324 to 1116 1 to 794       794/907
(87 %)
6 diff
(99.4 %id)
TI_59387283   .g 412 to 1222 62 to 873       812/812
(100 %)
6 diff
(99.3 %id)
BM910653 astrocytoma grade IV, cell line, brain .g 414 to 1306 1 to 900       900/1041
(86 %)
11 diff
(99.0 %id)
BE252071 eye, retinoblastoma .g 504 to 1051 1 to 548       548/548
(100 %)
0 diff
(100 %id)
TI_1948240891   .g 599 to 1484 1019 to 126       892/1428
(62 %)
27 diff
(98.2 %id)
TI_1948240334   .g 656 to 1484 955 to 129       827/1277
(64 %)
43 diff
(96.7 %id)
TI_1948240890   .g 656 to 1484 956 to 128       829/1309
(63 %)
10 diff
(99.3 %id)
BM044239 carcinoma, cell line, Prostate .g 696 to 1397 1 to 702       702/702
(100 %)
1 diff
(99.9 %id)
TI_45210880   .g 786 to 1622 92 to 925       834/925
(90 %)
13 diff
(98.6 %id)
BM765873 stomach .g 833 to 1501 1 to 669       669/669
(100 %)
0 diff
(100 %id)
BM766148 stomach .g 833 to 1361 1 to 529       529/529
(100 %)
0 diff
(100 %id)
BM773370 stomach .g 833 to 1414 1 to 582       582/582
(100 %)
0 diff
(100 %id)
TI_1948240333   .g 842 to 1484 771 to 128       644/1312
(49 %)
21 diff
(98.4 %id)
BU849006 ovary, teratocarcinoma, cell line .g 844 to 1734 1 to 895   tiling clone,   895/895
(100 %)
6 diff
(99.4 %id)
BX364813 Placenta Cot 25-normalized .g 870 to 1827 949 to 1       949/956
(99 %)
36 diff
(96.3 %id)
BX339935 Placenta Cot 25-normalized .g 886 to 1858 967 to 1       967/1006
(96 %)
18 diff
(98.3 %id)
AL544317 placenta, Placenta Cot 25-normalized .g 893 to 1856 968 to 7       962/1033
(93 %)
6 diff
(99.5 %id)
BM480257 eye, retinoblastoma .g 916 to 1717 1 to 800       800/1115
(71 %)
25 diff
(97.8 %id)
AL555725 placenta .g 983 to 1862 881 to 1       838/1044
(80 %)
20 diff
(98.1 %id)
T11669   .g 997 to 1191 201 to 4       198/201
(98 %)
12 diff
(94.1 %id)
EC475226 Prostate .g 1002 to 1084 86 to 4       83/93
(89 %)
0 diff
(100 %id)
AK098324 uterus .h 1 to 2369 1 to 2370 L95Q F209S tiling clone, available from FLJ,   2370/2370
(100 %)
5 diff
(99.8 %id)
BG256785 embryonal carcinoma, cell line, testis .h 1 to 193 1 to 193       193/193
(100 %)
2 diff
(99.0 %id)
DA524779 brain .h 2 to 552 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA780398 brain .h 2 to 198 2 to 199   capped   198/198
(100 %)
1 diff
(99.5 %id)
DB260300 uterus .h 2 to 564 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BQ946737 leiomyosarcoma, uterus .h 4 to 823 7 to 829   tiling clone,   823/930
(88 %)
6 diff
(99.4 %id)
BE867208 adenocarcinoma, colon .h 6 to 173 1 to 168       168/168
(100 %)
3 diff
(98.3 %id)
BM558111 astrocytoma grade IV, cell line, brain .h 12 to 757 1 to 754       754/1101
(68 %)
15 diff
(98.7 %id)
BF794154 lymph, lymphoma, cell line .h 21 to 193 1 to 173       173/173
(100 %)
0 diff
(100 %id)
DA938281 Spleen .h 21 to 248 2 to 229   capped   228/228
(100 %)
0 diff
(100 %id)
BF530619 anaplastic oligodendroglioma with 1p/19qloss, brain .h 22 to 193 1 to 172       172/172
(100 %)
0 diff
(100 %id)
DA533601 brain .h 24 to 601 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA876910 Prostate .h 24 to 592 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BE893319 melanotic melanoma, skin .h 35 to 173 1 to 139       139/139
(100 %)
0 diff
(100 %id)
BE886362 leiomyosarcoma, uterus .h 42 to 173 1 to 132       132/132
(100 %)
0 diff
(100 %id)
BM471924 eye, retinoblastoma .h 309 to 1145 1 to 849       849/1031
(82 %)
27 diff
(97.4 %id)
BE264886 lung, small cell carcinoma .h 317 to 829 1 to 513       513/513
(100 %)
0 diff
(100 %id)
CB152274 brain .h 340 to 818 1 to 479       479/479
(100 %)
0 diff
(100 %id)
DA627477 Kidney .h 340 to 883 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
CR624720 HeLa cells Cot 25-normalized .h 605 to 2312 1 to 1708   tiling clone,   1708/1708
(100 %)
0 diff
(100 %id)
AK129511 dermoid tumor .h 654 to 2359 1 to 1706   available from FLJ,   1706/1706
(100 %)
2 diff
(99.9 %id)
BX372362   .h 697 to 1617 918 to 1       918/918
(100 %)
7 diff
(99.3 %id)
BQ335702 marrow .h 764 to 1070 1 to 308       308/308
(100 %)
20 diff
(93.6 %id)
BF927453 nervous_tumor .h 848 to 1002 2 to 156       155/171
(90 %)
15 diff
(91.3 %id)
BI063346 uterus_tumor .h 862 to 1073 43 to 254       212/254
(83 %)
11 diff
(95.7 %id)
TI_57167450   .h 897 to 1647 29 to 796       768/806
(95 %)
66 diff
(91.9 %id)
BQ303345 breast .h 932 to 1264 338 to 3       336/341
(98 %)
14 diff
(95.9 %id)
BU789328 insulinoma, Pancreas .h 966 to 1479 8 to 521     Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 514/521
(98 %)
0 diff
(100 %id)
AA351632 brain .h 1032 to 1383 1 to 352       352/352
(100 %)
0 diff
(100 %id)
BI062652 uterus_tumor .h 1032 to 1736 705 to 1       705/705
(100 %)
3 diff
(99.6 %id)
BI063079 uterus_tumor .h 1059 to 1736 678 to 1       678/678
(100 %)
0 diff
(100 %id)
BI061443 uterus_tumor .h 1079 to 1736 658 to 1       658/658
(100 %)
0 diff
(100 %id)
FN086761 breast carcinoma .h 1109 to 1198 88 to 1     Submitted on the opposite strand 88/88
(100 %)
1 diff
(98.9 %id)
BI063400 uterus_tumor .h 1111 to 1736 626 to 1       626/626
(100 %)
0 diff
(100 %id)
BG698448 skin .h 1115 to 1833 1 to 720       720/720
(100 %)
4 diff
(99.5 %id)
TI_154162824   .h 1119 to 1766 76 to 735       660/1170
(56 %)
29 diff
(97.6 %id)
BI063132 uterus_tumor .h 1132 to 1744 616 to 6       611/616
(99 %)
1 diff
(99.9 %id)
BF843380 head_neck .h 1133 to 1463 343 to 2     Submitted on the opposite strand 342/347
(98 %)
1 diff
(99.8 %id)
BQ614613 insulinoma, Pancreas .h 1146 to 1564 7 to 425     Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 419/425
(98 %)
0 diff
(100 %id)
BU789067 insulinoma, Pancreas .h 1740 to 2363 640 to 17   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 624/624
(100 %)
1 diff
(99.9 %id)
DB351602 uterus .h 1855 to 2369 515 to 1       515/522
(98 %)
2 diff
(99.7 %id)
BQ614384 insulinoma, Pancreas .h 1874 to 2363 515 to 26   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 490/490
(100 %)
4 diff
(99.2 %id)
DB085399 testis .i 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DA177995 amygdala .i 110 to 690 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
BM543236 embryonal carcinoma, cell line, testis .i 275 to 1196 1 to 931   tiling clone,   931/1122
(82 %)
18 diff
(98.4 %id)
DA944085 Spleen .i 518 to 1094 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA924172 small intestine .i 599 to 1172 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BE275083 melanotic melanoma, skin .i 659 to 1459 1 to 810   tiling clone,   808/877
(92 %)
20 diff
(97.8 %id)
BE384227 melanotic melanoma, skin .i 659 to 1327 1 to 668   tiling clone,   668/729
(91 %)
18 diff
(97.6 %id)
BE798310 lung, small cell carcinoma .j 1 to 826 4 to 823       823/1150
(71 %)
24 diff
(98.0 %id)
BQ918440 large cell carcinoma, lung .j 1 to 645 3 to 648   tiling clone,   648/755
(85 %)
3 diff
(99.7 %id)
BE245607 leukopheresis .j 1 to 511 3 to 513       513/513
(100 %)
7 diff
(98.7 %id)
DC330731 hippocampus .j 1 to 471 1 to 471       471/471
(100 %)
0 diff
(100 %id)
DC341130 thalamus .j 1 to 506 1 to 506       506/506
(100 %)
0 diff
(100 %id)
DC351628 brain .j 1 to 374 1 to 374       374/374
(100 %)
1 diff
(99.8 %id)
DC368446   .j 1 to 504 1 to 504       504/504
(100 %)
0 diff
(100 %id)
DC370520   .j 1 to 467 1 to 468       468/468
(100 %)
2 diff
(99.6 %id)
DC375837 brain .j 1 to 450 1 to 450       450/450
(100 %)
1 diff
(99.8 %id)
DC406759 thymus .j 1 to 451 1 to 451       451/451
(100 %)
0 diff
(100 %id)
DC408471 thymus .j 1 to 467 1 to 467       467/467
(100 %)
0 diff
(100 %id)
DB201389 trachea .j 1 to 567 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DC419663 uterus .j 1 to 467 1 to 467       467/467
(100 %)
0 diff
(100 %id)
DC421973 uterus .j 1 to 445 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
DA013206 adrenal gland .j 2 to 562 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA050688   .j 2 to 588 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA061383 cerebellum .j 2 to 567 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA067660 cerebellum .j 2 to 579 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA288001 corpus callosum .j 2 to 561 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA310799 hippocampus .j 2 to 555 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA384358 thalamus .j 2 to 622 2 to 622   capped   621/621
(100 %)
1 diff
(99.9 %id)
DA436486 tongue, tumor tissue .j 2 to 566 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA488045 brain .j 2 to 577 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA742005   .j 2 to 550 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA924981 small intestine .j 2 to 574 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA933289 Spleen .j 2 to 561 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB043112 testis .j 2 to 571 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB242100 stomach, tumor tissue .j 2 to 559 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DC402444 testis .j 3 to 504 1 to 502       502/502
(100 %)
0 diff
(100 %id)
DB131625 thymus .j 4 to 593 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA763602 tongue .j 5 to 586 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DC328122 corpus callosum .j 7 to 538 1 to 532       532/532
(100 %)
2 diff
(99.7 %id)
DC331842 hippocampus .j 7 to 477 1 to 473       473/473
(100 %)
4 diff
(99.2 %id)
DC363384   .j 7 to 539 1 to 535       535/535
(100 %)
2 diff
(99.7 %id)
DA511463 brain .j 8 to 579 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA577888   .j 8 to 574 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA905403   .j 8 to 560 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB016483 esophageal, tumor tissue .j 10 to 569 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA704007   .j 11 to 475 2 to 466   capped   465/465
(100 %)
0 diff
(100 %id)
DA209637 brain .j 12 to 583 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA777618 brain .j 12 to 588 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CN261548 embryonic stem cells, DMSO-treated H9 cellline .j 13 to 604 1 to 592       592/592
(100 %)
0 diff
(100 %id)
DA794457 brain .j 16 to 542 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA040738 bladder .j 18 to 590 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA545514   .j 18 to 581 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA144660 amygdala .j 19 to 587 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA089897 cerebellum .j 20 to 593 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA390683 thalamus .j 20 to 600 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA502172 brain .j 20 to 588 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA514858 brain .j 20 to 550 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA578869   .j 20 to 581 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA872101 Prostate .j 20 to 573 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA880870   .j 20 to 391 2 to 373   capped   372/372
(100 %)
0 diff
(100 %id)
DA014486 adrenal gland .j 21 to 578 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA025270   .j 21 to 577 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA285212 corpus callosum .j 21 to 569 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA293941 hippocampus .j 21 to 578 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA383196 thalamus .j 21 to 559 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA387925 thalamus .j 21 to 612 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
AU279596   .j 21 to 579 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DA475504   .j 21 to 584 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA488422 brain .j 21 to 594 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA919241 small intestine .j 21 to 585 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB004350 breast, tumor tissue .j 21 to 558 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DB087425 testis .j 21 to 577 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB270752 uterus .j 21 to 564 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA025165   .j 22 to 587 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA255204 caudate nucleus .j 22 to 583 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA301768 hippocampus .j 22 to 571 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA344580 substantia nigra .j 22 to 601 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA558134   .j 22 to 594 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA642293 Liver .j 22 to 656 2 to 636   capped   635/635
(100 %)
0 diff
(100 %id)
DA654766   .j 22 to 588 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA704428   .j 22 to 489 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
DA920087 small intestine .j 22 to 573 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA200743 brain .j 23 to 563 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA210462 brain .j 23 to 579 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA285898 corpus callosum .j 23 to 521 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
DA614586   .j 23 to 594 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA063247 cerebellum .j 24 to 586 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA704297   .j 24 to 570 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB143665 thymus .j 24 to 545 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA665743   .j 25 to 555 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA905575   .j 28 to 576 8 to 556   capped   549/549
(100 %)
0 diff
(100 %id)
TI_154139552   .j 28 to 646 80 to 697       618/622
(99 %)
15 diff
(97.6 %id)
BE263875 lung, small cell carcinoma .j 29 to 630 1 to 602       602/602
(100 %)
0 diff
(100 %id)
BG823304 adenocarcinoma cell line, colon .j 35 to 875 1 to 847       847/933
(90 %)
12 diff
(98.8 %id)
DA656328   .j 53 to 621 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB464771 hippocampus .j 93 to 472 72 to 456       391/460
(85 %)
47 diff
(89.8 %id)
TI_57152048   .j 97 to 687 85 to 672       592/752
(78 %)
38 diff
(95.0 %id)
CB113119 Liver .j 148 to 466 1 to 319       319/319
(100 %)
0 diff
(100 %id)
CD675819 eye, lens .j 201 to 610 1 to 410       410/410
(100 %)
0 diff
(100 %id)
TI_149274831   .j 231 to 923 771 to 79   tiling clone, AAA   693/1021
(67 %)
2 diff
(99.9 %id)
BU608902 Human Lung Epithelial cells, lung .j 256 to 923 687 to 19   AAA   669/669
(100 %)
4 diff
(99.5 %id)
BU676339 lung, Primary Lung Epithelial Cells .j 284 to 923 658 to 19   AAA   640/640
(100 %)
0 diff
(100 %id)
DA442551 tongue, tumor tissue .j 311 to 814 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
CA312984 Human Lung Epithelial cells, lung .j 314 to 923 631 to 19   AAA   613/613
(100 %)
7 diff
(98.9 %id)
CA312930 Human Lung Epithelial cells, lung .j 352 to 923 590 to 19   AAA   572/572
(100 %)
0 diff
(100 %id)
DB014431 esophageal, tumor tissue .j 755 to 1155 2 to 413   tiling clone, capped   412/412
(100 %)
4 diff
(99.1 %id)
BM273299 Islets of Langerhans, Pancreas .k 1 to 571 1 to 571   tiling clone,   571/572
(99 %)
1 diff
(99.9 %id)
BM273061 Islets of Langerhans, Pancreas .k 1176 to 1763 590 to 3   tiling clone,   588/590
(99 %)
0 diff
(100 %id)
DC357490   .l 1 to 561 1 to 561   tiling clone,   561/561
(100 %)
0 diff
(100 %id)
DC341158 thalamus .l 2 to 575 1 to 574       574/574
(100 %)
0 diff
(100 %id)
DC363499   .l 30 to 557 1 to 529       529/529
(100 %)
1 diff
(99.9 %id)
DC371322   .l 41 to 603 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
BM833030 stomach .l 41 to 732 1 to 692       692/692
(100 %)
0 diff
(100 %id)
DC390160 Spleen .l 41 to 579 1 to 539       539/539
(100 %)
0 diff
(100 %id)
DC301550   .l 45 to 599 1 to 557       557/557
(100 %)
4 diff
(99.3 %id)
DA807053 brain .l 48 to 618 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DC376449 brain .l 49 to 685 1 to 638       638/638
(100 %)
8 diff
(98.8 %id)
BM463648 leiomyosarcoma, uterus .l 50 to 1048 1 to 1001 G244S E266K K267E K278N E281G ... tiling clone,   1001/1027
(97 %)
26 diff
(97.5 %id)
BG472502 eye, retinoblastoma .l 53 to 787 1 to 740       740/741
(99 %)
27 diff
(96.4 %id)
BX462737 T cells (Jurkat cell line) .l 55 to 727 1 to 672       672/672
(100 %)
2 diff
(99.8 %id)
DC315577 amygdala .l 58 to 610 1 to 553       553/553
(100 %)
2 diff
(99.7 %id)
DA741561   .l 60 to 561 2 to 504   capped   503/503
(100 %)
1 diff
(99.9 %id)
DC350828 brain .l 61 to 646 1 to 586       586/586
(100 %)
0 diff
(100 %id)
DC365301   .l 61 to 609 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
DC381826 placenta .l 61 to 645 1 to 585       585/585
(100 %)
0 diff
(100 %id)
DA025411   .l 104 to 666 2 to 565   capped   564/565
(99 %)
2 diff
(99.7 %id)
CN261545 embryonic stem cells, cell lines H1, H7, andH9 .l 184 to 721 1 to 538       538/538
(100 %)
0 diff
(100 %id)
BU145214 dorsal root ganglia .m 1 to 918 28 to 950 K227E L228A Q229T N230E L231S ... tiling clone,   923/950
(97 %)
13 diff
(98.7 %id)
BU185060 large cell carcinoma, lung .n 1 to 851 1 to 855   tiling clone,   859/877
(97 %)
29 diff
(96.7 %id)
BX401321   .n 12 to 905 21 to 914 E103G S167I Y211X Y215X F223X ... tiling clone,   894/914
(97 %)
6 diff
(99.4 %id)
AK300347 placenta .o 1 to 995 1 to 995 exact tiling clone,   995/995
(100 %)
1 diff
(99.9 %id)
DB143628 thymus .o 854 to 1342 2 to 492   tiling clone, capped   491/491
(100 %)
2 diff
(99.6 %id)
AA317002 lung .o 1267 to 1578 1 to 312   tiling clone,   312/315
(99 %)
4 diff
(98.8 %id)
DA645679 mammary gland .p 1 to 649 2 to 650   tiling clone, capped Submitted on the opposite strand 649/649
(100 %)
0 diff
(100 %id)
DA902964   .p 3 to 564 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB201814 trachea .p 3 to 587 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB282495 uterus .p 5 to 554 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BX419181 brain, fetal brain .p 18 to 899 1 to 881   tiling clone,   881/881
(100 %)
6 diff
(99.4 %id)
DA791873 brain .p 22 to 545 2 to 525   capped   529/524
(100 %)
8 diff
(98.5 %id)
BM543790 ovary (pool of 3) .p 39 to 900 1 to 865   tiling clone,   865/1091
(79 %)
12 diff
(99.0 %id)
BX413055 brain, fetal brain .p 1901 to 2609 712 to 7   tiling clone,   706/899
(78 %)
0 diff
(100 %id)
DA389235 thalamus .q 1 to 567 2 to 569   tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
TI_154196748   .q 8 to 793 14 to 796   tiling clone,   784/1060
(73 %)
13 diff
(98.8 %id)
TI_154197163   .q 13 to 793 61 to 840       780/1053
(74 %)
31 diff
(97.1 %id)
AI598200 anaplastic oligodendroglioma, brain .q 37 to 403 367 to 1       367/367
(100 %)
0 diff
(100 %id)
AI470478 pooled .q 100 to 421 322 to 1       322/322
(100 %)
0 diff
(100 %id)
DC376497 brain .q 105 to 632 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
BM827445 stomach .q 329 to 811 1 to 483       483/483
(100 %)
0 diff
(100 %id)
DC300034   .q 457 to 646 1 to 191       191/191
(100 %)
1 diff
(99.5 %id)
DA170298 amygdala .q 536 to 1052 2 to 520   capped   519/519
(100 %)
2 diff
(99.7 %id)
DA947150 Spleen .q 576 to 1117 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DA063375 cerebellum .q 578 to 1151 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DB179359 kidney, tumor tissue .q 578 to 1145 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA512155 brain .q 579 to 1133 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
AK315992 brain .q 581 to 1886 1 to 1306 exact tiling clone,   1306/1306
(100 %)
1 diff
(100.0 %id)
DA065871 cerebellum .q 582 to 1155 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA199768 brain .q 582 to 1155 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA302205 hippocampus .q 582 to 1139 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA483720 brain .q 590 to 1068 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DA142630 alzheimer cortex .q 592 to 1160 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
CB153664 brain .q 596 to 1193 1 to 598       598/598
(100 %)
0 diff
(100 %id)
DA061255 cerebellum .q 596 to 1162 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA176779 amygdala .q 596 to 1153 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA488279 brain .q 596 to 1151 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA519357 brain .q 596 to 1142 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA389000 thalamus .q 599 to 1186 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA498369 brain .r 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
DC419171 stomach, tumor tissue .r 25 to 566 1 to 542       542/542
(100 %)
0 diff
(100 %id)
BQ436573 embryonal carcinoma, cell line, testis .r 37 to 810 1 to 778 Q200X E207K N219T T220Q D221T ... tiling clone,   778/932
(83 %)
18 diff
(98.1 %id)
BP222300   .r 48 to 629 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DB244918 uterus, tumor tissue .r 50 to 612 2 to 566   capped   565/565
(100 %)
3 diff
(99.5 %id)
CN261551 embryonic stem cells, cell lines H1, H7, andH9 .r 99 to 742 1 to 643   tiling clone,   643/643
(100 %)
2 diff
(99.7 %id)
DA112112 cerebellum .s 1 to 537 2 to 538   tiling clone, capped   537/537
(100 %)
0 diff
(100 %id)
DA306215 hippocampus .s 119 to 555 2 to 438   capped   437/437
(100 %)
1 diff
(99.8 %id)
BE835871 prostate_normal .s 269 to 616 1 to 349       349/349
(100 %)
7 diff
(98.0 %id)
BG325593 Kidney, renal cell adenocarcinoma .s 523 to 1184 8 to 666   tiling clone,   659/668
(98 %)
6 diff
(99.2 %id)
BG424654 Kidney, renal cell adenocarcinoma .s 523 to 1226 8 to 701   tiling clone,   694/881
(78 %)
22 diff
(97.6 %id)
BG420249 Kidney, renal cell adenocarcinoma .s 523 to 1231 8 to 716   tiling clone,   709/983
(72 %)
13 diff
(98.7 %id)
BG421497 Kidney, renal cell adenocarcinoma .s 523 to 1102 8 to 596       589/974
(60 %)
18 diff
(98.2 %id)
BE272956 Kidney, renal cell adenocarcinoma .s 536 to 1127 1 to 590       590/813
(72 %)
17 diff
(98.0 %id)
BM475557 embryonal carcinoma, cell line, testis .t 1 to 1013 1 to 1024 Q118X K150S Y151T K152R D153T ... tiling clone,   1022/1024
(99 %)
28 diff
(97.3 %id)
BP242877 Liver .u 1 to 577 1 to 577   tiling clone,   577/577
(100 %)
1 diff
(99.9 %id)
DA095436 cerebellum .u 507 to 1026 2 to 521   tiling clone, capped   520/520
(100 %)
0 diff
(100 %id)
DA056760 cerebellum .va 1 to 591 2 to 592   tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
BI159754 epithelioid carcinoma cell line, Pancreas .va 4 to 637 1 to 649 P5R N6G T8I R18L A19L ... tiling clone,   649/894
(72 %)
33 diff
(96.4 %id)
AK310819 trachea .vb 1 to 1520 2 to 1521   tiling clone,   1521/1521
(100 %)
3 diff
(99.9 %id)
DB212361 trachea .vb 1 to 562 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA835297 placenta .vb 72 to 612 2 to 542   tiling clone, capped   541/541
(100 %)
2 diff
(99.7 %id)
T09128   .vb 221 to 397 1 to 177       177/177
(100 %)
0 diff
(100 %id)
DB328192 placenta .vb 1990 to 2550 561 to 1   tiling clone,   561/561
(100 %)
0 diff
(100 %id)
CN270367 embryonic stem cells, DMSO-treated H9 cellline .vc-u 1 to 409 1 to 409   tiling clone,   409/409
(100 %)
5 diff
(98.8 %id)
BQ947276 sciatic nerve .vc-u 146 to 980 12 to 853   tiling clone,   842/854
(98 %)
24 diff
(97.2 %id)
BQ636505 eye, retina .vc-u 493 to 769 1 to 277   tiling clone,   277/277
(100 %)
6 diff
(97.9 %id)
AL548918 placenta, Placenta Cot 25-normalized .vc-u 674 to 1671 1000 to 1 S164X tiling clone,   1000/1003
(99 %)
7 diff
(99.4 %id)
TI_149301588   .vc-u 715 to 1716 1070 to 84 F61X AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 987/991
(99 %)
29 diff
(97.1 %id)
AL583074 B cells from Burkitt lymphoma .vc-u 719 to 1684 963 to 1 D7B L8W S63R tiling clone,   963/966
(99 %)
16 diff
(98.4 %id)
TI_149301376   .vc-u 785 to 1720 997 to 75 A16P F61X W146Q AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 923/955
(96 %)
34 diff
(96.5 %id)
BQ941650 large cell carcinoma, lung .vc-u 786 to 1710 1 to 930 T184H F185L G186W L187X tiling clone,   930/931
(99 %)
9 diff
(99.1 %id)
TI_159720061   .vc-u 793 to 1720 1015 to 101 G2D K3L E4L A5L A6L ... AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 915/1043
(87 %)
25 diff
(97.7 %id)
TI_149299863   .vc-u 844 to 1720 950 to 88 D7E L8V A16P S18L C20P ... AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 863/991
(87 %)
33 diff
(96.7 %id)
EL946741 eyeball .vc-u 948 to 1365 40 to 457       418/457
(91 %)
0 diff
(100 %id)
TI_149296240   .vc-u 954 to 1710 871 to 115 A16P S17X S18X Q21X E22G ... AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 757/941
(80 %)
17 diff
(98.2 %id)
TI_151766642   .vc-u 958 to 1715 100 to 857 T58N T59N R71K R85K F95L ... AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 758/762
(99 %)
62 diff
(91.9 %id)
CR598905 Neuroblastoma Cot 10-normalized .vc-u 984 to 1722 1 to 739 exact tiling clone,   739/739
(100 %)
0 diff
(100 %id)
AL583480 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .vc-u 984 to 1722 1 to 739 exact fully sequenced,   739/739
(100 %)
1 diff
(99.9 %id)
CA313336 Human Lung Epithelial cells, lung .vc-u 987 to 1720 752 to 19 F45X F61X AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 734/734
(100 %)
1 diff
(99.9 %id)
CA312434 Human Lung Epithelial cells, lung .vc-u 988 to 1720 751 to 19 F45X F61X AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 733/733
(100 %)
0 diff
(100 %id)
FN108851 breast carcinoma .vc-u 1016 to 1120 1 to 105       105/105
(100 %)
0 diff
(100 %id)
BM694539 eye, RPE and Choroid .vc-u 1039 to 1332 1 to 294   fully sequenced, Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 294/294
(100 %)
0 diff
(100 %id)
TI_149289963   .vc-u 1041 to 1720 794 to 114   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 681/681
(100 %)
8 diff
(98.9 %id)
TI_154122974   .vc-u 1067 to 1720 754 to 96   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 659/974
(67 %)
7 diff
(99.3 %id)
TI_154040303   .vc-u 1086 to 1714 769 to 141   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 629/930
(67 %)
26 diff
(97.3 %id)
CA309915 Alveolar Macrophage, lung .vc-u 1123 to 1720 616 to 19   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 598/598
(100 %)
0 diff
(100 %id)
TI_151785525   .vc-u 1178 to 1722 103 to 647       545/651
(83 %)
7 diff
(99.0 %id)
BQ128245 insulinoma, Pancreas .vc-u 1198 to 1720 539 to 17   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 523/523
(100 %)
0 diff
(100 %id)
BF992504 placenta_normal .vc-u 1208 to 1512 1 to 305       305/305
(100 %)
0 diff
(100 %id)
AI384065 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vc-u 1214 to 1721 508 to 1       508/508
(100 %)
0 diff
(100 %id)
BM932050 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc-u 1227 to 1720 1 to 494   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 494/494
(100 %)
0 diff
(100 %id)
AI140280 lung .vc-u 1239 to 1719 481 to 1       481/481
(100 %)
0 diff
(100 %id)
FN153965 breast carcinoma .vc-u 1249 to 1340 1 to 90       90/92
(97 %)
3 diff
(96.8 %id)
AA595719 lung, lung tumor .vc-u 1267 to 1722 456 to 1       456/456
(100 %)
0 diff
(100 %id)
TI_154095141   .vc-u 1269 to 1720 571 to 116   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 456/1060
(43 %)
8 diff
(99.3 %id)
AA643992 colon, colon tumor RER+ .vc-u 1271 to 1719 449 to 1       449/449
(100 %)
0 diff
(100 %id)
FN148445 breast carcinoma .vc-u 1272 to 1367 1 to 99       99/99
(100 %)
2 diff
(98.0 %id)
AW152123 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .vc-u 1287 to 1720 434 to 1       434/434
(100 %)
0 diff
(100 %id)
BF802489 colon_ins .vc-u 1302 to 1536 1 to 234       234/247
(94 %)
3 diff
(98.8 %id)
BU731146 eye, RPE and Choroid .vc-u 1302 to 1720 438 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 420/420
(100 %)
1 diff
(99.8 %id)
AI197967 anaplastic oligodendroglioma, brain .vc-u 1319 to 1720 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AI304802 adenocarcinoma, colon .vc-u 1319 to 1720 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AI150970 heart .vc-u 1326 to 1720 395 to 1       395/395
(100 %)
0 diff
(100 %id)
AV725693 hypothalamus .vc-u 1338 to 1720 1 to 383   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 383/383
(100 %)
0 diff
(100 %id)
AV725694 hypothalamus .vc-u 1338 to 1720 1 to 383   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 383/383
(100 %)
0 diff
(100 %id)
AW732250 lung, small cell carcinoma .vc-u 1390 to 1710 338 to 18   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 321/321
(100 %)
0 diff
(100 %id)
AI648659 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .vc-u 1396 to 1721 326 to 1       326/326
(100 %)
0 diff
(100 %id)
BP327804 prostata .vc-u 1396 to 1720 1 to 325   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 325/325
(100 %)
0 diff
(100 %id)
AI568284 lymph node, lymphoma, follicular mixed small and largecell .vc-u 1399 to 1720 322 to 1       322/322
(100 %)
0 diff
(100 %id)
AL520325 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .vc-u 1406 to 1694 289 to 1   fully sequenced,   289/289
(100 %)
0 diff
(100 %id)
AW732249 lung, small cell carcinoma .vc-u 1427 to 1720 308 to 15   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 294/294
(100 %)
0 diff
(100 %id)
AA351740 brain .vc-u 1471 to 1708 238 to 1       238/238
(100 %)
0 diff
(100 %id)
AW087322 colon, moderately differentiated adenocarcinoma .vc-u 1497 to 1702 216 to 11   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 206/206
(100 %)
0 diff
(100 %id)
BM667875 eye, lens .vc-u 1502 to 1720 237 to 19   AAA Possibly primed on the genome, locally A rich (39/39 A in genome downstream of last aligned base) 219/219
(100 %)
0 diff
(100 %id)
BP232187 muscle .vd 1 to 583 1 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BP328338 rectum .vd 45 to 628 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BM925802 brain .vd 59 to 805 9 to 771 F136L A139P Q140X W143L L144A ... tiling clone,   763/1055
(72 %)
28 diff
(97.4 %id)
DA957137 Spleen .ve 1 to 554 2 to 555   tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
DA317003 hippocampus .ve 4 to 550 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB026316 testis .ve 7 to 573 2 to 568 exact tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DB281659 uterus .ve 13 to 572 2 to 562 G42X V43C C46V I47H D48* capped   561/561
(100 %)
3 diff
(99.5 %id)
DA301064 hippocampus .vf 1 to 558 2 to 559 exact tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
BI257406 cervical carcinoma cell line, cervix .vg 1 to 656 3 to 664 R87E K88S W89G R90G T92P ... tiling clone,   664/690
(96 %)
19 diff
(97.3 %id)
DC363209   .vh 1 to 562 1 to 562 exact tiling clone,   562/562
(100 %)
0 diff
(100 %id)
BG116887 duodenal adenocarcinoma, cell line, small intestine .vi 1 to 469 17 to 487 P2R S4R H5T A6Q E7N ... tiling clone,   471/487
(96 %)
2 diff
(99.6 %id)
CT001405 T-Lymphocytes .vj 1 to 467 1 to 467 R114E E115G V116S E117G S118E ... tiling clone,   467/475
(98 %)
8 diff
(98.4 %id)
DA044653 bladder .vk 1 to 450 3 to 452 exact tiling clone, capped   451/451
(100 %)
0 diff
(100 %id)
DC402599 testis .vl 1 to 565 1 to 565   tiling clone,   565/565
(100 %)
1 diff
(99.9 %id)
DC409864 thymus .vl 33 to 711 1 to 596       596/596
(100 %)
0 diff
(100 %id)
DC352025 brain .vl 36 to 598 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC363151   .vl 66 to 614 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC370449   .vl 101 to 639 1 to 539 exact tiling clone,   539/539
(100 %)
0 diff
(100 %id)
DA943104 Spleen .vm 1 to 494 2 to 496 G42X V43C C46V I47H D48* tiling clone, capped   495/495
(100 %)
4 diff
(99.2 %id)
TI_57167071   .vm 24 to 865 34 to 877 K24N A25G C26L D28Q C29T ...     844/877
(96 %)
12 diff
(98.7 %id)
BI835194 pooled pancreas and spleen .vm 26 to 865 1 to 842   tiling clone,   842/842
(100 %)
13 diff
(98.5 %id)
DA924900 small intestine .vn 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
BF353218 head_neck .vo-u 1 to 437 1 to 438 G7V P8A Q9P A10G P11S ... tiling clone,   438/438
(100 %)
4 diff
(99.1 %id)
BI045936 prostate_normal .vo-u 200 to 772 1 to 566   tiling clone,   566/569
(99 %)
34 diff
(94.1 %id)
CD695522 normal nasopharynx .vp 1 to 512 27 to 538 W36G tiling clone,   512/538
(95 %)
4 diff
(99.3 %id)
BQ954410 sciatic nerve .vp 10 to 838 1 to 840 exact     840/927
(90 %)
21 diff
(97.8 %id)
CR592151 fetal brain .vp 11 to 1733 1 to 1723 exact tiling clone,   1723/1723
(100 %)
0 diff
(100 %id)
BX441066 brain, fetal brain .vp 11 to 874 1 to 863 E4D P5X N6X K7R T8P ... fully sequenced,   863/863
(100 %)
5 diff
(99.5 %id)
DA054685 cerebellum .vp 21 to 581 2 to 562 exact capped   561/561
(100 %)
0 diff
(100 %id)
DA843784 placenta .vp 21 to 599 2 to 580 exact capped   579/579
(100 %)
1 diff
(99.9 %id)
DW438338 Liver .vp 305 to 533 17 to 246       230/246
(93 %)
0 diff
(100 %id)
BX455061 brain, fetal brain .vp 844 to 1732 894 to 1   fully sequenced,   894/894
(100 %)
30 diff
(96.7 %id)
AA634145   .vp 1300 to 1703 403 to 1       403/403
(100 %)
1 diff
(99.8 %id)
DB279429 uterus .vq 1 to 540 9 to 550 A2L G42X V43C C46V I47H ... tiling clone, capped   549/549
(100 %)
2 diff
(99.7 %id)
DA898242 skeletal muscle .vr 1 to 562 2 to 563 A49V tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
BF746535 breast .vs 1 to 443 441 to 1 exact tiling clone, Submitted on the opposite strand 441/441
(100 %)
2 diff
(99.6 %id)
DB110367 thymus .vt 1 to 518 2 to 518 exact tiling clone, capped   517/517
(100 %)
1 diff
(99.9 %id)
BX508244   .vu 1 to 791 2 to 791 T62A K88S Y89T K90R D91T ... tiling clone,   791/791
(100 %)
3 diff
(99.7 %id)
BX508245   .vu 1 to 666 2 to 669   tiling clone, Submitted on the opposite strand 667/671
(99 %)
4 diff
(99.5 %id)
DB258198 uterus .vu 5 to 570 2 to 568   tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DA027258   .vu 24 to 554 2 to 537   capped   536/540
(99 %)
11 diff
(98.0 %id)
BQ880770 dorsal root ganglia .vu 24 to 611 1 to 591       591/964
(61 %)
6 diff
(99.4 %id)
AW390265 stomach .vv-u 1 to 646 1 to 648 W37G P58L P69A E70K V75S tiling clone,   648/661
(98 %)
24 diff
(96.4 %id)
DA077427 cerebellum .vv-u 138 to 705 2 to 569 H8R S57P tiling clone, capped   568/568
(100 %)
4 diff
(99.3 %id)
DB128246 thymus .vv-u 138 to 696 2 to 560 H8R tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
DA516094 brain .vv-u 141 to 693 2 to 554 H61R tiling clone, capped   553/553
(100 %)
2 diff
(99.7 %id)
AA218832   .vv-u 392 to 561 170 to 1       170/170
(100 %)
1 diff
(99.5 %id)
CB143377 Liver .vw 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
DA787735 brain .vw 5 to 560 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
BG778408 adenocarcinoma, Prostate .vw 6 to 685 1 to 681   tiling clone,   681/685
(99 %)
3 diff
(99.6 %id)
DA067240 cerebellum .vw 10 to 575 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA149205 amygdala .vw 11 to 541 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA368015 subthalamic nucleus .vw 11 to 571 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA689257   .vw 11 to 541 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA270671 caudate nucleus .vw 12 to 553 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BG255611 adenocarcinoma, cell line, Prostate .vw 26 to 692 1 to 660 I14M D15I R16V K17R E19R ... tiling clone,   660/671
(98 %)
8 diff
(98.9 %id)
DB122183 thymus .vx-u 1 to 541 2 to 542 N6S tiling clone, capped   541/541
(100 %)
10 diff
(98.2 %id)
DA072638 cerebellum .vx-u 7 to 571 2 to 566 Y5C N6S T9A Q13R V18A ... tiling clone, capped   565/565
(100 %)
20 diff
(96.5 %id)
DA866205 Prostate .vx-u 80 to 653 2 to 579   tiling clone, capped   578/587
(98 %)
14 diff
(97.7 %id)
DA582485 lung .vy 1 to 293 2 to 294   tiling clone, capped   293/293
(100 %)
0 diff
(100 %id)
DA900949   .vy 1 to 642 2 to 647 R16X L17X tiling clone, capped   644/656
(98 %)
15 diff
(97.8 %id)
BM750454 Ascites, stomach .vz 1 to 548 8 to 556 R11K R38K tiling clone,   556/556
(100 %)
9 diff
(98.4 %id)
BP194100 brain Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
AK304541 uterus Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BF855039 prostate_normal Gene PACSIN3andARFGAP2, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BI063406 uterus_tumor Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
BX116994 whole brain Gene PACSIN3andARFGAP2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AL545033 placenta, Placenta Cot 25-normalized Gene PACSIN3andARFGAP2, variant not shown         This clone was ignored    
AL570928 placenta, Placenta Cot 25-normalized Gene PACSIN3andARFGAP2, variant not shown         This clone was ignored    
DW425281 Liver Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
DW433562 Liver Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
AV696466 hepatocellular carcinoma Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
AV700386 hepatocellular carcinoma Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
H17111 whole brain Gene PACSIN3andARFGAP2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
H17214 whole brain Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
N93071 lung Gene PACSIN3andARFGAP2, variant not shown         This clone was ignored    
W24724 lung Gene PACSIN3andARFGAP2, variant not shown         This clone was ignored    
N93072 lung Gene PACSIN3andARFGAP2, variant not shown         This clone was ignored    
W24725 lung Gene PACSIN3andARFGAP2, variant not shown         This clone was ignored    
BI335436 cervical carcinoma cell line, cervix Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
TI_44167858   Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
TI_44169645   Gene PACSIN3andARFGAP2, variant not shown         Suspected internal deletion, this clone was ignored    
DB156740 thymus Gene PACSIN3andARFGAP2, variant not shown       capped This clone was ignored    
DB167434 kidney, tumor tissue Gene PACSIN3andARFGAP2, variant not shown       capped This clone was ignored    
36 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc-u, .vd, .ve, .vf, .vg, .vh, .vi, .vj, .vk, .vl, .vm, .vn, .vo-u, .vp, .vq, .vr, .vs, .vt, .vu, .vv-u, .vw, .vx-u, .vy, .vz Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI