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Gene OXTRTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
151 supporting clones for gene OXTR back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA578278   .a 1 to 472 2 to 473   tiling clone, capped   472/481
(98 %)
6 diff
(98.8 %id)
DA022769   .a 17 to 589 2 to 574   tiling clone, capped   573/573
(100 %)
2 diff
(99.7 %id)
DA577651   .a 147 to 698 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DA575677   .a 196 to 743 2 to 549   tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
DA033918   .a 274 to 505 2 to 233   capped   232/232
(100 %)
1 diff
(99.6 %id)
DB318962   .a 1859 to 2399 541 to 1   tiling clone,   541/541
(100 %)
1 diff
(99.9 %id)
W48795 senescent fibroblast .a 2225 to 2629 1 to 414   tiling clone,   414/415
(99 %)
19 diff
(95.5 %id)
N24269 melanocyte .a 2582 to 3022 1 to 447   tiling clone,   447/448
(99 %)
10 diff
(97.8 %id)
TI_154110304   .a 3575 to 4368 876 to 86   tiling clone, AAA   791/923
(85 %)
96 diff
(89.6 %id)
AL691540 human spinal cord .a 3577 to 3901 319 to 1   tiling clone, Submitted on the opposite strand 319/319
(100 %)
12 diff
(96.3 %id)
BU633232 cell lines, Chondrosarcoma .a 3643 to 4365 741 to 19   AAA   723/723
(100 %)
3 diff
(99.6 %id)
BM725410 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3650 to 4199 1 to 550   tiling clone,   550/550
(100 %)
0 diff
(100 %id)
W49718 senescent fibroblast .a 3710 to 4161 1 to 464   fully sequenced,   464/464
(100 %)
9 diff
(98.1 %id)
W31181 senescent fibroblast .a 3780 to 3952 1 to 178   fully sequenced,   178/178
(100 %)
4 diff
(97.8 %id)
AI741501 pooled .a 3785 to 4355 570 to 1       570/570
(100 %)
16 diff
(97.2 %id)
AI337877 uterus .a 3849 to 4345 497 to 1       497/497
(100 %)
0 diff
(100 %id)
BU960267 mixed (pool of 40 RNAs) .a 3849 to 4332 1 to 484       484/488
(99 %)
2 diff
(99.6 %id)
CN267503 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3858 to 4332 1 to 475   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 475/475
(100 %)
2 diff
(99.6 %id)
BE670966 carcinoid, lung .a 3890 to 4374 488 to 4       485/488
(99 %)
0 diff
(100 %id)
N29244 melanocyte .a 3901 to 4367 1 to 468   fully sequenced,   468/468
(100 %)
5 diff
(99.0 %id)
AI042536 senescent fibroblast .a 3904 to 4347 458 to 15   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 444/446
(99 %)
0 diff
(100 %id)
N29260 melanocyte .a 3919 to 4360 1 to 445       445/450
(98 %)
4 diff
(99.2 %id)
N98877 senescent fibroblast .a 3922 to 4375 473 to 21   fully sequenced, AAA   453/453
(100 %)
10 diff
(97.8 %id)
AI769087 pooled .a 3929 to 4357 432 to 2       431/432
(99 %)
0 diff
(100 %id)
AI373858 uterus .a 3931 to 4332 420 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 402/402
(100 %)
0 diff
(100 %id)
AA708935 uterus .a 3942 to 4360 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AI081501 senescent fibroblast .a 3944 to 4370 428 to 2       427/428
(99 %)
0 diff
(100 %id)
AI493945 uterus .a 3948 to 4368 421 to 1       421/421
(100 %)
15 diff
(96.5 %id)
W49621 senescent fibroblast .a 3949 to 4365 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
AW244068 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .a 3952 to 4345 398 to 5       394/398
(98 %)
0 diff
(100 %id)
BQ184235 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3952 to 4373 440 to 19   AAA   422/428
(98 %)
1 diff
(99.8 %id)
TI_151730905   .a 3952 to 4373 502 to 80   AAA   423/969
(43 %)
2 diff
(99.8 %id)
H98702 melanocyte .a 3954 to 4373 419 to 1       419/419
(100 %)
1 diff
(99.8 %id)
BQ186020 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3954 to 4373 1 to 420   AAA   420/420
(100 %)
1 diff
(99.8 %id)
BM719549 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3955 to 4373 1 to 419   AAA   419/419
(100 %)
0 diff
(100 %id)
BQ187570 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3955 to 4373 1 to 419   AAA   419/419
(100 %)
0 diff
(100 %id)
AI952594 normal epithelium, ovary .a 3968 to 4365 398 to 1       398/398
(100 %)
0 diff
(100 %id)
AI424076 brain, glioblastoma (pooled) .a 3976 to 4377 402 to 1   tiling clone,   402/402
(100 %)
0 diff
(100 %id)
AI126508 uterus .a 3977 to 4368 408 to 17   AAA   392/392
(100 %)
4 diff
(99.0 %id)
AA770672 carcinoid, lung .a 3983 to 4373 401 to 11   AAA   391/391
(100 %)
0 diff
(100 %id)
AI086587 senescent fibroblast .a 4018 to 4364 351 to 5       347/351
(98 %)
0 diff
(100 %id)
AI095416 senescent fibroblast .a 4032 to 4365 347 to 14   AAA   334/334
(100 %)
0 diff
(100 %id)
AI189246 uterus .a 4068 to 4366 300 to 2       299/300
(99 %)
0 diff
(100 %id)
AW198223 adenocarcinoma, Pancreas .a 4075 to 4355 285 to 1       285/285
(100 %)
4 diff
(98.6 %id)
W49719 senescent fibroblast .a 4131 to 4360 255 to 22   fully sequenced, AAA   234/234
(100 %)
1 diff
(99.6 %id)
N20539 melanocyte .a 4146 to 4363 220 to 1   fully sequenced,   220/220
(100 %)
5 diff
(97.8 %id)
BE741836 adenocarcinoma cell line, ovary .a 4152 to 5015 1 to 857   tiling clone,   857/1025
(83 %)
30 diff
(97.1 %id)
AI074793 senescent fibroblast .a 4205 to 4362 160 to 3       158/160
(98 %)
0 diff
(100 %id)
AA937742 carcinoid, lung .a 4232 to 4373 142 to 1       142/142
(100 %)
0 diff
(100 %id)
BM677838 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4261 to 4365 121 to 17   AAA   105/105
(100 %)
0 diff
(100 %id)
CB124232 Liver .a 4360 to 4959 1 to 600   tiling clone,   600/600
(100 %)
1 diff
(99.9 %id)
DA654096   .b 1 to 496 2 to 497   tiling clone, capped   496/496
(100 %)
9 diff
(98.2 %id)
DA026240   .b 2 to 565 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
NM_000916.3   .b 4 to 4364 1 to 4361 exact RefSeq,   4361/4361
(100 %)
0 diff
(100 %id)
DA656938   .b 5 to 570 2 to 567   capped   566/566
(100 %)
5 diff
(99.2 %id)
DA025701   .b 6 to 325 2 to 321   capped   320/320
(100 %)
1 diff
(99.7 %id)
DA025759   .b 6 to 569 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA574650   .b 6 to 547 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DA575537   .b 6 to 584 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
DA577125   .b 6 to 514 2 to 510   capped   509/509
(100 %)
2 diff
(99.7 %id)
DA578236   .b 6 to 556 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA654229   .b 6 to 274 2 to 270   capped   269/269
(100 %)
1 diff
(99.7 %id)
DA654804   .b 6 to 569 2 to 567   capped   566/566
(100 %)
5 diff
(99.2 %id)
DA655727   .b 6 to 547 2 to 544   capped   543/543
(100 %)
4 diff
(99.3 %id)
DA657262   .b 6 to 514 2 to 510   capped   509/509
(100 %)
2 diff
(99.7 %id)
DA657494   .b 6 to 477 2 to 473   capped   472/472
(100 %)
1 diff
(99.8 %id)
DA658892   .b 6 to 573 2 to 570   capped   569/569
(100 %)
5 diff
(99.2 %id)
DA659146   .b 6 to 565 2 to 561   capped   560/565
(99 %)
5 diff
(99.2 %id)
DA660050   .b 6 to 547 2 to 543   capped   542/542
(100 %)
4 diff
(99.3 %id)
DA660336   .b 6 to 494 2 to 490   capped   489/489
(100 %)
4 diff
(99.2 %id)
DA660889   .b 6 to 503 2 to 499   capped   498/498
(100 %)
2 diff
(99.6 %id)
DA661047   .b 6 to 503 2 to 507   capped   506/507
(99 %)
12 diff
(97.7 %id)
DA021746   .b 9 to 583 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA024297   .b 9 to 567 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA028804   .b 9 to 477 2 to 470   capped   469/469
(100 %)
1 diff
(99.8 %id)
DA573825   .b 9 to 547 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA575598   .b 9 to 331 2 to 324   capped   323/323
(100 %)
1 diff
(99.7 %id)
DA648436   .b 9 to 286 2 to 279   capped   278/285
(97 %)
2 diff
(99.3 %id)
DA652556   .b 9 to 529 2 to 522   capped   521/521
(100 %)
3 diff
(99.5 %id)
DA580666   .b 11 to 567 2 to 558   tiling clone, capped   557/557
(100 %)
2 diff
(99.7 %id)
DA647455   .b 23 to 720 2 to 702   capped   701/701
(100 %)
14 diff
(98.1 %id)
DA649932   .b 23 to 274 2 to 254   capped   253/253
(100 %)
2 diff
(99.3 %id)
DA031376   .b 34 to 607 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA020777   .b 38 to 595 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
DA023857   .b 136 to 617 2 to 483   capped   482/482
(100 %)
2 diff
(99.6 %id)
DA573844   .b 136 to 701 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA655653   .b 136 to 446 2 to 312   capped   311/311
(100 %)
1 diff
(99.7 %id)
DA703351   .b 136 to 596 2 to 462   capped   461/461
(100 %)
2 diff
(99.6 %id)
DB215007 trachea .b 136 to 489 2 to 355   capped   354/354
(100 %)
0 diff
(100 %id)
DB229619 trachea .b 136 to 698 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA577628   .b 140 to 611 2 to 473   capped   472/472
(100 %)
1 diff
(99.8 %id)
DA577188   .b 151 to 477 2 to 328   capped   327/327
(100 %)
0 diff
(100 %id)
AK313830   .b 182 to 1795 1 to 1617   tiling clone,   1617/1617
(100 %)
5 diff
(99.7 %id)
DA574176   .b 183 to 713 2 to 535   capped   534/534
(100 %)
5 diff
(99.1 %id)
DA656648   .b 183 to 685 2 to 504   capped   503/514
(97 %)
2 diff
(99.7 %id)
DA026745   .b 185 to 679 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
DA029069   .b 185 to 758 2 to 577   capped   576/576
(100 %)
5 diff
(99.2 %id)
DA086379 cerebellum .b 185 to 502 2 to 319   capped   318/318
(100 %)
1 diff
(99.7 %id)
DA686850   .b 185 to 685 2 to 502   capped   501/501
(100 %)
1 diff
(99.9 %id)
CN483273 eye .b 214 to 845 1 to 632       632/632
(100 %)
4 diff
(99.4 %id)
DA654104   .b 220 to 816 2 to 598   capped   597/597
(100 %)
2 diff
(99.7 %id)
DA020335   .b 221 to 793 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA027427   .b 226 to 605 2 to 381   capped   380/380
(100 %)
1 diff
(99.8 %id)
DA659454   .b 242 to 520 2 to 280   capped   279/279
(100 %)
1 diff
(99.7 %id)
BP209825 cerebellum .b 251 to 829 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
X64878 uterus .b 259 to 4364 1 to 4103   tiling clone,   4103/4103
(100 %)
5 diff
(99.9 %id)
DA575396   .b 263 to 611 2 to 350   capped   349/349
(100 %)
1 diff
(99.8 %id)
DA579189   .b 328 to 872 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA653095   .b 376 to 793 2 to 420   capped   419/426
(98 %)
3 diff
(99.3 %id)
CN267502 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 433 to 858 1 to 426       426/426
(100 %)
3 diff
(99.3 %id)
BC137443 Brain, cerebral cortex, PCR rescued clones .b 465 to 1922 1 to 1458       1458/1458
(100 %)
3 diff
(99.8 %id)
AY389507 ovary .b 626 to 1795 1 to 1170       1170/1170
(100 %)
1 diff
(100.0 %id)
DA574791   .b 768 to 1310 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
CO957022 mixed .b 1172 to 1796 639 to 18       622/793
(78 %)
5 diff
(99.4 %id)
CN267504 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1334 to 1675 1 to 342       342/342
(100 %)
7 diff
(98.0 %id)
AA085759.
matches multiple genes
uterus .b 1833 to 2412 577 to 1     also hits gene nerporbo 577/585
(98 %)
3 diff
(99.5 %id)
AA029832 uterus .b 1867 to 2409 1 to 548   fully sequenced,   548/548
(100 %)
9 diff
(98.4 %id)
AI147896 uterus .b 1922 to 2412 491 to 1       491/491
(100 %)
2 diff
(99.6 %id)
AI129833 uterus .b 1940 to 2473 535 to 3       533/535
(99 %)
0 diff
(100 %id)
AI126365 uterus .b 1949 to 2421 475 to 3       473/475
(99 %)
0 diff
(100 %id)
BE644994 pooled .b 1999 to 2447 452 to 4       449/452
(99 %)
0 diff
(100 %id)
AW088256 brain, tumor, 5 pooled (see description) .b 2000 to 2455 456 to 1       456/456
(100 %)
0 diff
(100 %id)
AI095591 uterus .b 2002 to 2412 411 to 1       411/411
(100 %)
1 diff
(99.8 %id)
AI129228 uterus .b 2018 to 2443 425 to 1       425/425
(100 %)
3 diff
(99.3 %id)
AI050725 senescent fibroblast .b 2067 to 2475 413 to 5       409/413
(99 %)
0 diff
(100 %id)
AI129969 uterus .b 2093 to 2455 390 to 28   AAA   363/363
(100 %)
7 diff
(98.1 %id)
AA029292 uterus .b 2153 to 2412 264 to 1   fully sequenced,   264/264
(100 %)
3 diff
(98.9 %id)
DA656947   .b 2380 to 2867 2 to 490   capped   489/489
(100 %)
3 diff
(99.4 %id)
BU935285 mixed (pool of 40 RNAs) .b 2434 to 3263 1 to 837       837/837
(100 %)
29 diff
(96.6 %id)
BU940170 mixed (pool of 40 RNAs) .b 2446 to 3160 1 to 721       721/794
(90 %)
15 diff
(98.2 %id)
BG121434 adenocarcinoma, cell line, Liver .b 2498 to 3290 1 to 798       798/1200
(66 %)
34 diff
(97.2 %id)
BF439048 pooled .b 2510 to 3080 579 to 9       571/579
(98 %)
0 diff
(100 %id)
BI871378 adenocarcinoma, cell line, Liver .b 2538 to 3341 22 to 825       804/825
(97 %)
11 diff
(98.7 %id)
TI_57229906   .b 2538 to 3341 112 to 915       804/825
(97 %)
11 diff
(98.7 %id)
BG178935 adenocarcinoma, cell line, Prostate .b 2575 to 3348 1 to 774       774/840
(92 %)
15 diff
(98.3 %id)
BU741714 eye, fetal eye .b 2592 to 3291 18 to 717   AAA Submitted on the opposite strand 700/717
(97 %)
0 diff
(100 %id)
BP326368 prostata .b 2619 to 3199 1 to 583   tiling clone,   583/583
(100 %)
3 diff
(99.5 %id)
BG250301 adenocarcinoma, cell line, Liver .b 2748 to 3461 1 to 696       696/934
(74 %)
30 diff
(96.8 %id)
ES315338 occipital scalp hair, skin .b 2979 to 3142 1 to 164       164/164
(100 %)
0 diff
(100 %id)
AA599020   .b 3053 to 3564 524 to 13   AAA   512/512
(100 %)
15 diff
(97.1 %id)
AI093997 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3060 to 3564 507 to 4       504/507
(99 %)
0 diff
(100 %id)
AI016447   .b 3121 to 3564 447 to 4       444/447
(99 %)
0 diff
(100 %id)
AA599029   .b 3257 to 3564 320 to 13   AAA   308/308
(100 %)
0 diff
(100 %id)
BM724550 eye, fetal eye .b 3412 to 3965 554 to 1   tiling clone, Submitted on the opposite strand 554/554
(100 %)
0 diff
(100 %id)
AW886852 ovary .b 3472 to 4144 24 to 690       667/694
(96 %)
10 diff
(98.6 %id)
DA655539   .c 1 to 526 7 to 537 A17C R18C S19C L20S G21L ... tiling clone, capped   536/536
(100 %)
9 diff
(98.4 %id)
AA375875 lung .d-u 1 to 323 1 to 324   tiling clone,   324/324
(100 %)
2 diff
(99.4 %id)
DB192110 ovary, tumor tissue .d-u 204 to 773 2 to 571   capped   570/571
(99 %)
2 diff
(99.7 %id)
BG202489   .d-u 210 to 999 1 to 788   tiling clone,   788/788
(100 %)
28 diff
(96.5 %id)
W52155 senescent fibroblast .d-u 248 to 810 1 to 561       561/567
(98 %)
12 diff
(97.9 %id)
W52156 senescent fibroblast .d-u 249 to 811 1 to 567       567/570
(99 %)
13 diff
(97.8 %id)
BX281938 adenocarcinoma, cell line, Liver .d-u 251 to 724 1 to 474   tiling clone,   474/474
(100 %)
0 diff
(100 %id)
BG251303 adenocarcinoma, cell line, Liver .d-u 253 to 970 1 to 711   tiling clone,   711/714
(99 %)
17 diff
(97.7 %id)
AA043827.
matches multiple genes
uterus .d-u 352 to 657 1 to 306     also hits gene CRLS1 306/314
(97 %)
13 diff
(95.9 %id)
AA094736   .d-u 663 to 850 1 to 186   tiling clone,   186/187
(99 %)
5 diff
(97.4 %id)
DR000655 fetal brain .e 1 to 600 8 to 610 R71C G100W G101W G102X S103G ... tiling clone,   603/610
(98 %)
4 diff
(99.4 %id)
DA026712   .f 1 to 481 3 to 483 T10A tiling clone, capped   482/482
(100 %)
2 diff
(99.6 %id)
DA578133   .g-u 1 to 382 7 to 388 Q21E tiling clone, capped   387/387
(100 %)
3 diff
(99.3 %id)
DA576314   Gene OXTR, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI