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Gene OVOL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
91 supporting clones for gene OVOL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB094756 testis .a 1 to 571 2 to 576   tiling clone, capped   575/575
(100 %)
5 diff
(99.2 %id)
BG290379 bladder, transitional cell papilloma, cell line .a 2222 to 2953 1 to 739   tiling clone,   739/739
(100 %)
26 diff
(96.5 %id)
TI_159720322   .a 2374 to 3281 996 to 98   tiling clone, AAA   899/1022
(87 %)
15 diff
(98.6 %id)
BG958077 colon .a 2414 to 2739 11 to 335       325/335
(97 %)
6 diff
(98.3 %id)
R06865 liver and spleen .a 2502 to 2989 1 to 489       489/491
(99 %)
17 diff
(96.6 %id)
TI_149278618   .a 2578 to 3281 783 to 81   AAA   703/703
(100 %)
9 diff
(98.8 %id)
CB852898 Human Lung Epithelial cells, lung .a 2610 to 3281 690 to 19   AAA   672/672
(100 %)
0 diff
(100 %id)
BF772382 epid_tumor .a 2626 to 2925 1 to 300       300/300
(100 %)
0 diff
(100 %id)
CA311282 Human Lung Epithelial cells, lung .a 2632 to 3281 668 to 19   AAA   650/650
(100 %)
2 diff
(99.7 %id)
AI990027 pooled germ cell tumors .a 2738 to 3288 554 to 4   tiling clone,   551/554
(99 %)
0 diff
(100 %id)
AI459171 pooled .a 2749 to 3279 533 to 3       531/533
(99 %)
0 diff
(100 %id)
DB341668 testis .a 2756 to 3288 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
BU678551 lung, Primary Lung Epithelial Cells .a 2764 to 3281 536 to 19   AAA   518/518
(100 %)
0 diff
(100 %id)
AW188136 pooled .a 2824 to 3283 461 to 2       460/461
(99 %)
0 diff
(100 %id)
AW207443   .a 2845 to 3288 461 to 18   AAA   444/444
(100 %)
0 diff
(100 %id)
AI953063 pooled germ cell tumors .a 2854 to 3288 437 to 4       434/437
(99 %)
0 diff
(100 %id)
AA992356   .a 2861 to 3283 424 to 2       423/424
(99 %)
0 diff
(100 %id)
AW340064 pooled .a 2866 to 3283 420 to 3       418/420
(99 %)
0 diff
(100 %id)
AI584093 adenocarcinoma, Pancreas .a 2904 to 3284 387 to 8       380/387
(98 %)
0 diff
(100 %id)
AW207036   .a 2930 to 3287 375 to 18   AAA   358/358
(100 %)
1 diff
(99.8 %id)
AW453082   .a 2949 to 3287 356 to 18   AAA   339/339
(100 %)
0 diff
(100 %id)
AI075228 parathyroid gland, parathyroid tumor .a 2999 to 3287 300 to 12   AAA   289/289
(100 %)
0 diff
(100 %id)
AW235444 pooled germ cell tumors .a 3031 to 3273 244 to 1       244/280
(87 %)
8 diff
(97.2 %id)
R06866 liver and spleen .a 3040 to 3288 303 to 55   AAA   249/249
(100 %)
0 diff
(100 %id)
DA585109 lung .b 1 to 500 2 to 501   tiling clone, capped   500/500
(100 %)
2 diff
(99.6 %id)
DB042149 testis .b 14 to 593 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DA766354 tongue .b 25 to 595 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
BC059408 Placenta, normal .b 37 to 3027 1 to 2991   tiling clone, available from MGC, AAA   2991/2991
(100 %)
4 diff
(99.9 %id)
CB961078 Human Placenta, placenta .b 37 to 699 28 to 693       666/796
(83 %)
14 diff
(98.3 %id)
NM_004561.2   .b 37 to 3027 1 to 2991   RefSeq, AAA   2991/2991
(100 %)
0 diff
(100 %id)
AL702845 human skeletal muscle .b 44 to 587 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DA445649 tongue, tumor tissue .b 45 to 622 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA470219   .b 45 to 606 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA763272 tongue .b 45 to 612 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA863213 placenta .b 45 to 682 2 to 639   capped   638/638
(100 %)
1 diff
(99.9 %id)
DB018380 esophageal, tumor tissue .b 45 to 598 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB198833 trachea .b 45 to 608 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB210951 trachea .b 45 to 569 2 to 526   capped   525/525
(100 %)
2 diff
(99.7 %id)
DB215391 trachea .b 45 to 506 2 to 463   capped   462/462
(100 %)
2 diff
(99.6 %id)
DA859670 placenta .b 47 to 595 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB043638 testis .b 47 to 631 2 to 589   capped   588/588
(100 %)
5 diff
(99.2 %id)
TI_57149520   .b 58 to 721 72 to 736       665/736
(90 %)
6 diff
(99.2 %id)
CV572438 cornea, eye .b 59 to 678 1 to 620   tiling clone,   620/620
(100 %)
0 diff
(100 %id)
AK291711 placenta .b 78 to 1223 1 to 1146 F38L     1146/1146
(100 %)
2 diff
(99.9 %id)
CD050473 embryonic trophoblasts, made from WA01 stemcells .b 78 to 951 17 to 897       881/898
(98 %)
17 diff
(98.2 %id)
BP271283 small intestine .b 78 to 659 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA629072 Kidney .b 79 to 655 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA761976 tongue .b 79 to 594 2 to 517   capped   516/516
(100 %)
1 diff
(99.9 %id)
DA858135 placenta .b 79 to 646 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DB189309 lung, tumor tissue .b 80 to 627 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BX337110 Placenta Cot 25-normalized .b 85 to 857 1 to 772       772/772
(100 %)
10 diff
(98.8 %id)
BX648725 salivary gland .b 133 to 3027 1 to 2895   tiling clone, available from DKFZ, AAA   2895/2895
(100 %)
2 diff
(100.0 %id)
AW806853 stomach .b 263 to 488 1 to 237       237/241
(98 %)
20 diff
(91.8 %id)
EL734090 mixed .b 353 to 1008 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
TI_1948208687   .b 353 to 1162 128 to 940 K211Q V214L S246F K247Q K248E ... fully sequenced,   813/940
(86 %)
16 diff
(98.3 %id)
TI_1948208854   .b 353 to 1159 127 to 937 H228P H231A S246F K247Q A250G ... fully sequenced,   811/937
(86 %)
27 diff
(97.2 %id)
TI_1948209024   .b 353 to 1158 129 to 937 H231A H236P T245N A250G A252G ... fully sequenced,   809/937
(86 %)
30 diff
(96.8 %id)
TI_1948209189   .b 353 to 1157 130 to 934 A210G K211Q H228P V229S L230W ... fully sequenced,   805/934
(86 %)
29 diff
(96.9 %id)
BP369631 testis .b 392 to 971 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BC043146 testis .b 422 to 1828 1 to 1407   available from MGC, AAA   1407/1407
(100 %)
5 diff
(99.7 %id)
BI561897 testis .b 422 to 1215 1 to 797   available from MGC,   797/797
(100 %)
16 diff
(98.0 %id)
TI_44350429   .b 424 to 1215 126 to 920       795/920
(86 %)
18 diff
(98.1 %id)
BP368948 testis .b 426 to 978 24 to 576       553/568
(97 %)
7 diff
(98.8 %id)
DB444306.
matches multiple genes
testis .b 437 to 896 1 to 457     also hits gene meemoby 457/460
(99 %)
14 diff
(97.0 %id)
DB446778.
matches multiple genes
testis .b 437 to 652 1 to 216     also hits gene meemoby 216/216
(100 %)
3 diff
(98.7 %id)
DB028342 testis .b 445 to 992 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DN997085 breast cancer, Mammary gland (cancer tissue) .b 479 to 1142 11 to 674       664/674
(98 %)
6 diff
(99.2 %id)
BX094609   .b 540 to 1308 1 to 770       770/770
(100 %)
2 diff
(99.8 %id)
AA402455   .b 540 to 868 1 to 317       317/320
(99 %)
19 diff
(94.1 %id)
BP370277 testis .b 547 to 1114 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
TI_1948208688   .b 750 to 1162 532 to 120   fully sequenced,   413/532
(77 %)
5 diff
(99.1 %id)
TI_1948208855   .b 750 to 1162 529 to 117   fully sequenced,   413/529
(78 %)
5 diff
(99.1 %id)
TI_1948209025   .b 750 to 1162 532 to 119   fully sequenced,   414/532
(77 %)
5 diff
(99.1 %id)
TI_1948209190   .b 750 to 1162 528 to 116   fully sequenced,   413/528
(78 %)
5 diff
(99.1 %id)
BU860123 adenocarcinoma, cell line, breast .b 816 to 1623 1 to 817       817/955
(85 %)
21 diff
(97.9 %id)
AW732967 choriocarcinoma, placenta .b 931 to 1354 1 to 424       424/424
(100 %)
3 diff
(99.3 %id)
AW732960 choriocarcinoma, placenta .b 938 to 1419 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
DA762707 tongue .b 938 to 1511 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
TI_153988475   .b 1212 to 1825 709 to 95   AAA   615/615
(100 %)
16 diff
(97.4 %id)
BF062806 colon, colon tumor, RER+ .b 1338 to 1825 490 to 1       490/490
(100 %)
11 diff
(97.8 %id)
AW204720   .b 1345 to 1825 498 to 18   AAA   481/481
(100 %)
2 diff
(99.6 %id)
CN285311 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1357 to 1831 1 to 475       475/475
(100 %)
0 diff
(100 %id)
AI198629   .b 1366 to 1830 468 to 4       465/468
(99 %)
0 diff
(100 %id)
AA576716 colon, colon tumor RER+ .b 1463 to 1830 369 to 4       366/369
(99 %)
0 diff
(100 %id)
AA609086   .b 1465 to 1827 365 to 4       362/365
(99 %)
0 diff
(100 %id)
AW450907   .b 1509 to 1828 334 to 15   AAA   320/329
(97 %)
0 diff
(100 %id)
AA758279   .b 1514 to 1825 324 to 16   AAA   309/309
(100 %)
3 diff
(99.1 %id)
AA411991   .b 1516 to 1825 324 to 16   AAA   309/309
(100 %)
7 diff
(97.8 %id)
CD171850 testis .b 1539 to 2362 1 to 829       829/855
(96 %)
7 diff
(99.2 %id)
AA255802 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1583 to 1998 1 to 411       411/411
(100 %)
6 diff
(98.6 %id)
AL702846 human skeletal muscle .b 2551 to 3033 501 to 19   AAA   483/483
(100 %)
0 diff
(100 %id)
AA256695 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2757 to 3029 273 to 1       273/273
(100 %)
1 diff
(99.7 %id)
BG772018 testis .c 1 to 776 6 to 778 H221R H222P T231N G249A S250A ... tiling clone,   773/780
(99 %)
15 diff
(98.1 %id)
DB033714 testis .d 1 to 582 2 to 583   tiling clone, to resequence, capped   582/582
(100 %)
0 diff
(100 %id)
AF016045   .d 592 to 2364 1 to 1767 P14L V16G V17G A18P Q19A ... tiling clone,   1767/1767
(100 %)
13 diff
(99.3 %id)
DB337259 testis .d 1724 to 2289 566 to 1   tiling clone, to resequence,   566/568
(99 %)
0 diff
(100 %id)
DB055715 testis .e 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
BX337075 Placenta Cot 25-normalized Gene OVOL1, variant not shown         Suspected internal deletion, this clone was ignored    
AA588400 colon, colon tumor RER+ Gene OVOL1, variant not shown         Suspected internal deletion, this clone was ignored    
AI811656 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors Gene OVOL1, variant not shown         This clone was ignored    
DB024983 testis Gene OVOL1, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C