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Gene ONECUT2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
82 supporting clones for gene ONECUT2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_004852.2   .a 1 to 16121 1 to 16121 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 16121/16121
(100 %)
0 diff
(100 %id)
Y18198   .a 1 to 1656 1 to 1655 G17R C18A A19P M20* tiling clone,   1655/1655
(100 %)
6 diff
(99.7 %id)
AA973446 carcinoid, lung .a 797 to 1192 1 to 393     Submitted on the opposite strand 393/395
(99 %)
7 diff
(98.3 %id)
BG055295 carcinoid, lung .a 803 to 1260 1 to 458     Submitted on the opposite strand 458/640
(71 %)
15 diff
(97.7 %id)
AA121823   .a 1260 to 1482 200 to 423       224/423
(52 %)
6 diff
(98.6 %id)
CB070263 Pancreas, Purified pancreatic islet .a 1486 to 2104 25 to 643   tiling clone,   619/648
(95 %)
6 diff
(99.1 %id)
CK903170 Pancreas, Purified pancreatic islet .a 1527 to 2076 1 to 551     Submitted on the opposite strand 551/551
(100 %)
2 diff
(99.7 %id)
CR746959 carcinoid, lung .a 1664 to 2130 476 to 1   tiling clone, Submitted on the opposite strand 476/476
(100 %)
7 diff
(98.6 %id)
CK903171 Pancreas, Purified pancreatic islet .a 2141 to 2695 555 to 1   tiling clone, Submitted on the opposite strand 555/555
(100 %)
3 diff
(99.5 %id)
CB069755 Pancreas, Purified pancreatic islet .a 2322 to 2694 373 to 1   tiling clone,   373/373
(100 %)
2 diff
(99.5 %id)
BU186994 eye, retinoblastoma .a 2693 to 3540 1 to 852   tiling clone,   852/852
(100 %)
14 diff
(98.4 %id)
AA121824   .a 2887 to 3334 448 to 1   tiling clone,   448/448
(100 %)
12 diff
(97.4 %id)
BU173119 eye, retinoblastoma .a 3672 to 4574 1 to 908   tiling clone,   908/916
(99 %)
20 diff
(97.9 %id)
AI760931 2 pooled tumors (clear cell type), Kidney .a 3730 to 4219 495 to 6       490/495
(98 %)
0 diff
(100 %id)
BM472058 eye, retinoblastoma .a 3989 to 4835 1 to 852   tiling clone,   852/1020
(83 %)
6 diff
(99.5 %id)
AW135455   .a 4968 to 5400 450 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 433/433
(100 %)
0 diff
(100 %id)
BE206250 carcinoma cell line, cervix .a 5362 to 5866 1 to 503   tiling clone, Submitted on the opposite strand 503/503
(100 %)
3 diff
(99.5 %id)
BU165282 eye, retinoblastoma .a 6060 to 6943 1 to 886   tiling clone,   886/886
(100 %)
5 diff
(99.5 %id)
CK820800 Pancreas, Purified pancreatic islet .a 6455 to 6979 1 to 525     Submitted on the opposite strand 525/525
(100 %)
2 diff
(99.7 %id)
BI792049 Pancreas, Purified pancreatic islet .a 6515 to 6925 1 to 411       411/411
(100 %)
4 diff
(99.1 %id)
BM720585 eye, fetal eye .a 6770 to 7454 1 to 683       683/683
(100 %)
8 diff
(98.9 %id)
CR590917 T cells (Jurkat cell line) Cot10-normalized .a 6894 to 7935 1 to 1042   tiling clone,   1042/1042
(100 %)
0 diff
(100 %id)
BX341248   .a 6894 to 7606 1 to 713   fully sequenced,   713/713
(100 %)
2 diff
(99.8 %id)
BM728147 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7107 to 7455 1 to 349   fully sequenced,   349/349
(100 %)
2 diff
(99.5 %id)
BE778265 eye, retinoblastoma .a 7124 to 7823 1 to 704       704/935
(75 %)
22 diff
(97.7 %id)
DA573094 whole embryo, mainly body .a 7141 to 7947 2 to 806   capped   805/805
(100 %)
11 diff
(98.7 %id)
TI_151721884   .a 7236 to 7962 775 to 53       723/840
(86 %)
0 diff
(100 %id)
BE549585 carcinoid, lung .a 7384 to 7938 555 to 1       555/555
(100 %)
2 diff
(99.7 %id)
BU189863 eye, retinoblastoma .a 7388 to 8254 1 to 875   tiling clone,   875/880
(99 %)
10 diff
(98.9 %id)
BM681328 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7425 to 7954 530 to 1   fully sequenced,   530/530
(100 %)
0 diff
(100 %id)
C06494   .a 7447 to 7974 539 to 4       536/541
(99 %)
0 diff
(100 %id)
CK820801 Pancreas, Purified pancreatic islet .a 7529 to 7954 426 to 1     Submitted on the opposite strand 426/426
(100 %)
0 diff
(100 %id)
BF111212 carcinoid, lung .a 7533 to 7968 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
BX352365   .a 7576 to 7934 361 to 1   fully sequenced,   361/361
(100 %)
2 diff
(99.5 %id)
AW134928   .a 7580 to 7953 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
AI914335 carcinoid, lung .a 7601 to 7945 346 to 1       346/346
(100 %)
1 diff
(99.8 %id)
BI713651 Pancreas, Purified pancreatic islet .a 7611 to 7936 335 to 10       326/335
(97 %)
0 diff
(100 %id)
BE328169 carcinoid, lung .a 7640 to 7966 326 to 1       326/326
(100 %)
4 diff
(98.8 %id)
H49805 liver and spleen .a 7806 to 8159 1 to 355   tiling clone,   355/355
(100 %)
5 diff
(98.6 %id)
BX092590 carcinoid, lung .a 8258 to 8648 5 to 395   tiling clone, Submitted on the opposite strand 391/395
(98 %)
6 diff
(98.5 %id)
DB360238 whole embryo, mainly body .a 8507 to 9025 518 to 1       518/548
(94 %)
2 diff
(99.7 %id)
BE467392 carcinoid, lung .a 8529 to 9028 500 to 1   tiling clone,   500/500
(100 %)
1 diff
(99.8 %id)
AW295390   .a 8586 to 9040 455 to 1   tiling clone,   455/455
(100 %)
3 diff
(99.4 %id)
AI914207 carcinoid, lung .a 8651 to 9028 378 to 1       378/378
(100 %)
2 diff
(99.5 %id)
BF171966 blood .a 8881 to 8982 1 to 102       102/106
(96 %)
1 diff
(99.1 %id)
AW137357   .a 8882 to 9024 144 to 2       143/147
(97 %)
0 diff
(100 %id)
AK021717 whole embryo, mainly head .a 9879 to 11429 1 to 1551   tiling clone, available from FLJ,   1551/1551
(100 %)
1 diff
(100.0 %id)
AU118873 whole embryo, mainly head .a 9880 to 10787 2 to 909   capped   908/909
(99 %)
14 diff
(98.5 %id)
AW440112 endometrioid ovarian metastasis, ovary .a 10562 to 11018 22 to 478     Submitted on the opposite strand 457/478
(95 %)
6 diff
(98.8 %id)
BQ938925 sciatic nerve .a 10769 to 11429 1 to 661   tiling clone, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 661/661
(100 %)
4 diff
(99.4 %id)
AU145336 whole embryo, mainly head .a 10839 to 11429 590 to 1       590/591
(99 %)
6 diff
(99.0 %id)
BM560759 eye, retinoblastoma .a 11478 to 12435 62 to 1021   tiling clone,   960/1074
(89 %)
19 diff
(98.3 %id)
DB448889 testis .b 1 to 437 1 to 437 exact tiling clone,   437/437
(100 %)
0 diff
(100 %id)
AK124558 cerebellum .c-u 1 to 3586 2 to 3600 S63I N64* tiling clone, available from FLJ,   3600/3600
(100 %)
12 diff
(99.7 %id)
DA097100 cerebellum .c-u 1 to 555 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BE549556 carcinoid, lung .c-u 441 to 975 538 to 4       535/538
(99 %)
0 diff
(100 %id)
AI799624 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c-u 829 to 1275 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
CN288780 embryonic stem cells, DMSO-treated H9 cellline .c-u 1638 to 2174 1 to 541 S63I N64*     541/541
(100 %)
2 diff
(99.7 %id)
BC013134 Bladder, transitional cell papilloma .c-u 1967 to 3586 1 to 1620   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 1620/1620
(100 %)
4 diff
(99.8 %id)
BG288919 bladder, transitional cell papilloma, cell line .c-u 1968 to 2703 1 to 738   available from MGC,   738/744
(99 %)
17 diff
(97.8 %id)
BI253238 cervical carcinoma cell line, cervix .c-u 1978 to 2623 1 to 645       645/646
(99 %)
3 diff
(99.6 %id)
AA345790 gall bladder .c-u 2132 to 2417 1 to 286       286/286
(100 %)
1 diff
(99.7 %id)
BE738838 hypernephroma, Kidney .c-u 2315 to 2943 1 to 635       635/637
(99 %)
21 diff
(96.8 %id)
AW295195   .c-u 2491 to 3062 587 to 16       572/587
(97 %)
0 diff
(100 %id)
AW900077 nervous_normal .c-u 2546 to 2833 287 to 1       287/287
(100 %)
3 diff
(99.0 %id)
BG150015 carcinoid, lung .c-u 2547 to 3050 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
BE739385 hypernephroma, Kidney .c-u 2737 to 3527 801 to 15       787/801
(98 %)
0 diff
(100 %id)
BM745737 stomach .c-u 2795 to 3378 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
DB298787 cerebellum .c-u 3031 to 3586 563 to 1       563/563
(100 %)
3 diff
(99.5 %id)
BX283057 carcinoid, lung .c-u 3078 to 3554 1 to 477       477/489
(97 %)
9 diff
(98.2 %id)
CR746325 carcinoid, lung .c-u 3078 to 3554 1 to 477       477/489
(97 %)
9 diff
(98.2 %id)
AI792715 carcinoid, lung .c-u 3092 to 3554 1 to 463       463/477
(97 %)
1 diff
(99.8 %id)
AI792983 carcinoid, lung .c-u 3095 to 3412 1 to 318   fully sequenced,   318/318
(100 %)
1 diff
(99.7 %id)
BG150301 pooled germ cell tumors .c-u 3106 to 3587 490 to 1       490/490
(100 %)
5 diff
(99.0 %id)
BF433490 carcinoid, lung .c-u 3163 to 3587 438 to 9       430/438
(98 %)
0 diff
(100 %id)
AI216056 carcinoid, lung .c-u 3209 to 3586 385 to 1       385/385
(100 %)
3 diff
(99.3 %id)
AW294603   .c-u 3250 to 3586 361 to 18   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 344/354
(97 %)
6 diff
(98.4 %id)
BQ953899 sciatic nerve .c-u 3260 to 3586 1 to 327   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 327/327
(100 %)
0 diff
(100 %id)
BE348482 carcinoid, lung .c-u 3283 to 3585 310 to 1       310/310
(100 %)
3 diff
(99.1 %id)
BE669645 carcinoid, lung .c-u 3284 to 3587 313 to 3   tiling clone,   311/313
(99 %)
0 diff
(100 %id)
BF223531 carcinoid, lung .c-u 3300 to 3587 300 to 4       297/300
(99 %)
0 diff
(100 %id)
AI800945 pooled .c-u 3306 to 3522 217 to 1       217/217
(100 %)
2 diff
(99.1 %id)
BM693010.
matches multiple genes
eye, Retina Foveal and Macular .c-u 3319 to 3586 1 to 268   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base), also hits gene pleyso 268/268
(100 %)
0 diff
(100 %id)
AA935692 carcinoid, lung .c-u 3382 to 3585 211 to 1   fully sequenced,   211/211
(100 %)
3 diff
(98.6 %id)
AV653671 corresponding non cancerous liver tissue Gene ONECUT2, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV688391 hepatocellular carcinoma Gene ONECUT2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AV691811 hepatocellular carcinoma Gene ONECUT2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BC108925 PCR rescued clones Gene ONECUT2, variant not shown         Suspected internal deletion, this clone was ignored    
BC108926 PCR rescued clones Gene ONECUT2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC