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Gene OLIG1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
107 supporting clones for gene OLIG1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC033290 Brain, anaplastic oligodendroglioma with1p/19q loss .a-u 1 to 2276 8 to 2283 exact tiling clone, available from MGC, AAA   2276/2283
(99 %)
6 diff
(99.8 %id)
NM_138983.2   .a-u 1 to 2278 1 to 2278 exact RefSeq, AAA   2278/2278
(100 %)
0 diff
(100 %id)
AL834450 brain .a-u 8 to 2275 1 to 2268 exact tiling clone, available from DKFZ, AAA   2268/2268
(100 %)
2 diff
(100.0 %id)
BC026989 Brain, anaplastic oligodendroglioma with1p/19q loss .a-u 124 to 2276 1 to 2153   tiling clone, available from MGC, AAA   2153/2153
(100 %)
2 diff
(100.0 %id)
BG820604 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 827 to 1581 1 to 756       756/756
(100 %)
7 diff
(99.1 %id)
AL355743   .a-u 857 to 2269 1 to 1413   AAA   1413/1413
(100 %)
2 diff
(99.9 %id)
BG913961 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 889 to 1650 1 to 769       769/781
(98 %)
21 diff
(97.4 %id)
BG914200 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 894 to 1576 1 to 663       663/694
(95 %)
35 diff
(95.0 %id)
BF345621 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 903 to 1563 1 to 661       661/661
(100 %)
7 diff
(99.0 %id)
BG911304 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 952 to 1582 1 to 637       637/988
(64 %)
20 diff
(98.0 %id)
BG820894 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1041 to 1932 1 to 892       892/908
(98 %)
49 diff
(94.7 %id)
EB385575 eye, optic nerve .a-u 1046 to 1868 1 to 823       823/823
(100 %)
0 diff
(100 %id)
BG913217 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1100 to 1819 7 to 724       718/724
(99 %)
6 diff
(99.2 %id)
BF346862 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1101 to 1868 1 to 762       762/853
(89 %)
22 diff
(97.5 %id)
BG818382 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1126 to 1849 1 to 727       727/727
(100 %)
12 diff
(98.4 %id)
BG910690 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1182 to 1951 20 to 789       770/871
(88 %)
70 diff
(92.0 %id)
BI554242 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1223 to 2113 11 to 906       896/906
(98 %)
6 diff
(99.4 %id)
TI_44384945   .a-u 1223 to 2113 65 to 960       896/906
(98 %)
6 diff
(99.4 %id)
BG819444 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1269 to 1970 20 to 729       710/730
(97 %)
44 diff
(94.0 %id)
BG819935 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1293 to 2059 1 to 765       765/769
(99 %)
5 diff
(99.4 %id)
AI272289 brain, oligodendroglioma .a-u 1392 to 1788 1 to 397     Submitted on the opposite strand 397/397
(100 %)
1 diff
(99.8 %id)
BG914308 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1402 to 2177 14 to 784       771/784
(98 %)
6 diff
(99.3 %id)
BM686760 eye, optic nerve .a-u 1503 to 1942 3 to 442   fully sequenced,   440/442
(99 %)
5 diff
(98.9 %id)
BF528269 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1519 to 2257 1 to 731       731/735
(99 %)
13 diff
(98.3 %id)
BG818170 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1560 to 2156 1 to 596       596/597
(99 %)
3 diff
(99.5 %id)
BI032711 nervous_normal .a-u 1571 to 1904 336 to 1       336/336
(100 %)
16 diff
(95.3 %id)
BG913693 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1585 to 2271 1 to 690       690/708
(97 %)
12 diff
(98.4 %id)
AA338577 brain .a-u 1637 to 1797 1 to 161       161/161
(100 %)
1 diff
(99.4 %id)
BC011252 Brain, glioblastoma with EGFR amplification .a-u 1638 to 2276 1 to 639   available from MGC, AAA   639/639
(100 %)
0 diff
(100 %id)
BF342035 brain, glioblastoma with EGFR amplification .a-u 1639 to 2276 1 to 630   available from MGC,   630/647
(97 %)
11 diff
(98.3 %id)
CA438546 lung, Metastatic Chondrosarcoma .a-u 1650 to 2269 637 to 19   AAA   619/619
(100 %)
1 diff
(99.9 %id)
AW131811 brain, medulloblastoma .a-u 1686 to 2270 588 to 4       585/588
(99 %)
0 diff
(100 %id)
BE223033 brain, oligodendroglioma .a-u 1701 to 2269 568 to 1       568/568
(100 %)
8 diff
(98.6 %id)
DB550898 hippocampus .a-u 1754 to 2269 1 to 516     Submitted on the opposite strand 516/516
(100 %)
0 diff
(100 %id)
AI272180 brain, oligodendroglioma .a-u 1755 to 2143 1 to 389     Submitted on the opposite strand 389/389
(100 %)
0 diff
(100 %id)
DB546907 hippocampus .a-u 1762 to 2269 1 to 508     Submitted on the opposite strand 508/508
(100 %)
2 diff
(99.7 %id)
BG818781 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1763 to 2269 9 to 515   AAA   507/515
(98 %)
6 diff
(98.9 %id)
DB577575 hypothalamus .a-u 1774 to 2267 1 to 494     Submitted on the opposite strand 494/495
(99 %)
3 diff
(99.4 %id)
BG913504 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1774 to 2276 1 to 503   AAA   503/503
(100 %)
2 diff
(99.7 %id)
BG913499 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1774 to 2276 1 to 503   AAA   503/503
(100 %)
1 diff
(99.9 %id)
DB543082 hippocampus .a-u 1776 to 2267 1 to 492     Submitted on the opposite strand 492/494
(99 %)
3 diff
(99.4 %id)
BE857379 brain, glioblastoma (pooled) .a-u 1783 to 2277 497 to 3       495/497
(99 %)
0 diff
(100 %id)
BX115465 whole brain .a-u 1786 to 2267 497 to 15   AAA   483/483
(100 %)
1 diff
(99.8 %id)
DB570603 hypothalamus .a-u 1789 to 2269 1 to 481     Submitted on the opposite strand 481/481
(100 %)
0 diff
(100 %id)
AW274456 Kidney .a-u 1795 to 2275 489 to 5       485/489
(99 %)
0 diff
(100 %id)
BE856394 brain, glioblastoma (pooled) .a-u 1795 to 2277 485 to 3       483/485
(99 %)
0 diff
(100 %id)
DB573118 hypothalamus .a-u 1799 to 2267 1 to 469     Submitted on the opposite strand 469/470
(99 %)
2 diff
(99.6 %id)
DB565906 hypothalamus .a-u 1803 to 2269 1 to 467     Submitted on the opposite strand 467/467
(100 %)
1 diff
(99.8 %id)
AI479913 anaplastic oligodendroglioma, brain .a-u 1809 to 2269 472 to 12   AAA   461/461
(100 %)
0 diff
(100 %id)
AI498592 anaplastic oligodendroglioma, brain .a-u 1810 to 2269 473 to 14   AAA   460/460
(100 %)
1 diff
(99.8 %id)
AI566858 anaplastic oligodendroglioma, brain .a-u 1812 to 2269 471 to 14   AAA   458/458
(100 %)
0 diff
(100 %id)
AI359174 brain, glioblastoma (pooled) .a-u 1813 to 2269 457 to 1       457/457
(100 %)
0 diff
(100 %id)
DB549386 hippocampus .a-u 1822 to 2267 1 to 445     Submitted on the opposite strand 445/447
(99 %)
3 diff
(99.4 %id)
DB539707 hippocampus .a-u 1830 to 2268 1 to 440     Submitted on the opposite strand 440/441
(99 %)
16 diff
(96.4 %id)
DB546803 hippocampus .a-u 1835 to 2269 1 to 435     Submitted on the opposite strand 435/435
(100 %)
15 diff
(96.6 %id)
AI199664 anaplastic oligodendroglioma, brain .a-u 1848 to 2269 433 to 12   AAA   422/422
(100 %)
0 diff
(100 %id)
AW298788   .a-u 1848 to 2278 446 to 16   AAA   431/431
(100 %)
0 diff
(100 %id)
AW026386 brain, glioblastoma (pooled) .a-u 1866 to 2276 411 to 1       411/411
(100 %)
0 diff
(100 %id)
N55425 multiple sclerosis lesions .a-u 1880 to 2219 49 to 390       342/421
(81 %)
10 diff
(97.7 %id)
DB539923 hippocampus .a-u 1882 to 2269 1 to 399     Submitted on the opposite strand 399/399
(100 %)
44 diff
(89.0 %id)
BF346847 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1883 to 2022 452 to 586       566/589
(96 %)
20 diff
(96.7 %id)
AW292168   .a-u 1885 to 2276 409 to 18   AAA   392/392
(100 %)
0 diff
(100 %id)
DB570123 hypothalamus .a-u 1890 to 2269 1 to 381     Submitted on the opposite strand 381/382
(99 %)
13 diff
(96.6 %id)
BF345260 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1909 to 2269 1 to 359   AAA   359/359
(100 %)
2 diff
(99.5 %id)
BF347799 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1911 to 2269 1 to 356   AAA   356/356
(100 %)
3 diff
(99.2 %id)
BG818389 anaplastic oligodendroglioma with 1p/19qloss, brain .a-u 1911 to 2269 1 to 357   AAA   357/357
(100 %)
2 diff
(99.5 %id)
BM672942 eye, optic nerve .a-u 1912 to 2269 376 to 19   fully sequenced, AAA   358/358
(100 %)
0 diff
(100 %id)
DB529489 hippocampus .a-u 1917 to 2269 1 to 362     Submitted on the opposite strand 362/362
(100 %)
25 diff
(93.1 %id)
AW071904 anaplastic oligodendroglioma, brain .a-u 1949 to 2270 322 to 1       322/322
(100 %)
0 diff
(100 %id)
BG056808 anaplastic oligodendroglioma, brain .a-u 1960 to 2269 321 to 12   AAA   310/310
(100 %)
1 diff
(99.7 %id)
AI475131 anaplastic oligodendroglioma, brain .a-u 1963 to 2270 313 to 6       308/313
(98 %)
0 diff
(100 %id)
AW614560 Kidney .a-u 1966 to 2276 311 to 1       311/311
(100 %)
0 diff
(100 %id)
AW292625   .a-u 2029 to 2276 265 to 18   AAA   248/248
(100 %)
1 diff
(99.6 %id)
DB555557 hypothalamus .a-u 2032 to 2269 1 to 240     Submitted on the opposite strand 240/240
(100 %)
11 diff
(95.5 %id)
DB528826 hippocampus .a-u 2035 to 2269 1 to 235     Submitted on the opposite strand 235/235
(100 %)
4 diff
(98.3 %id)
Z38150 brain, total brain .a-u 2041 to 2269 228 to 1       228/228
(100 %)
1 diff
(99.6 %id)
DB564865 hypothalamus .a-u 2044 to 2269 1 to 226     Submitted on the opposite strand 226/227
(99 %)
4 diff
(98.3 %id)
AW292622   .a-u 2054 to 2276 240 to 18   AAA   223/223
(100 %)
1 diff
(99.6 %id)
AI933112 anaplastic oligodendroglioma, brain .a-u 2094 to 2269 177 to 1       177/177
(100 %)
6 diff
(96.7 %id)
DB478262 hippocampus .b 1 to 490 1 to 490   tiling clone,   490/490
(100 %)
0 diff
(100 %id)
DB474270 hippocampus .b 4 to 510 1 to 508       508/508
(100 %)
3 diff
(99.5 %id)
DB480621 hippocampus .b 4 to 514 1 to 512       512/512
(100 %)
6 diff
(98.9 %id)
AB209791 brain .b 10 to 1125 1 to 1119 T49S S50T T52S S53T T55S ... tiling clone,   1119/1119
(100 %)
1 diff
(100.0 %id)
DB501919 hypothalamus .b 103 to 571 1 to 469       469/469
(100 %)
0 diff
(100 %id)
DB506274 hypothalamus .b 103 to 522 1 to 420       420/420
(100 %)
4 diff
(99.1 %id)
DB482039 hippocampus .b 133 to 619 1 to 487       487/487
(100 %)
0 diff
(100 %id)
DB493826 hypothalamus .b 139 to 653 1 to 515       515/516
(99 %)
3 diff
(99.5 %id)
DB494860 hypothalamus .b 152 to 641 1 to 490       490/490
(100 %)
3 diff
(99.4 %id)
DB499476 hypothalamus .b 152 to 641 1 to 490       490/490
(100 %)
3 diff
(99.4 %id)
BM171825 anaplastic oligodendroglioma with 1p/19qloss, brain .b 255 to 640 1 to 387       387/389
(99 %)
4 diff
(99.0 %id)
BG912343 anaplastic oligodendroglioma with 1p/19qloss, brain .b 659 to 1377 1 to 716       716/723
(99 %)
19 diff
(97.4 %id)
BG913267 anaplastic oligodendroglioma with 1p/19qloss, brain .b 732 to 1486 1 to 756   tiling clone,   756/757
(99 %)
13 diff
(98.3 %id)
BI554265 anaplastic oligodendroglioma with 1p/19qloss, brain .b 799 to 1445 6 to 658   tiling clone,   653/867
(75 %)
21 diff
(97.6 %id)
TI_44384969   .b 799 to 1445 57 to 709       653/867
(75 %)
21 diff
(97.6 %id)
R56745 whole brain .b 858 to 1295 1 to 435       435/435
(100 %)
11 diff
(97.5 %id)
BG911932 anaplastic oligodendroglioma with 1p/19qloss, brain .b 876 to 1486 1 to 618   tiling clone,   618/618
(100 %)
15 diff
(97.6 %id)
T75118 whole brain .b 892 to 1254 10 to 369       360/374
(96 %)
12 diff
(96.8 %id)
AI214085 astrocytoma, brain .b 963 to 1337 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
AI214065 astrocytoma, brain .b 985 to 1355 371 to 1   tiling clone,   371/371
(100 %)
1 diff
(99.8 %id)
BX411248 brain, fetal brain .b 992 to 1283 292 to 1       292/292
(100 %)
22 diff
(92.5 %id)
BG912718 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1030 to 1390 7 to 378       372/409
(90 %)
6 diff
(98.6 %id)
AI301817 2 pooled tumors (clear cell type), Kidney .b 1525 to 1924 406 to 7   tiling clone,   400/406
(98 %)
0 diff
(100 %id)
R56898 whole brain .b 1531 to 1924 422 to 9   tiling clone,   414/445
(93 %)
0 diff
(100 %id)
AI769629 2 pooled tumors (clear cell type), Kidney .b 1550 to 1924 381 to 7       375/381
(98 %)
0 diff
(100 %id)
R38546 whole brain .b 1639 to 1922 301 to 12       290/301
(96 %)
0 diff
(100 %id)
BX440449 brain, fetal brain .c 1 to 1056 1049 to 1   tiling clone,   1049/1049
(100 %)
42 diff
(96.0 %id)
AL549368 placenta, Placenta Cot 25-normalized .c 329 to 1083 1 to 756   tiling clone,   756/756
(100 %)
3 diff
(99.7 %id)
BX412675 brain, fetal brain .c 385 to 1080 696 to 1       696/823
(84 %)
49 diff
(94.1 %id)
N62423 multiple sclerosis lesions .c 703 to 1089 395 to 1   tiling clone,   392/395
(99 %)
16 diff
(96.0 %id)
BF346482 anaplastic oligodendroglioma with 1p/19qloss, brain Gene OLIG1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC