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Gene OCA2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
42 supporting clones for gene OCA2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG282272 melanotic melanoma, skin .a 1 to 687 1 to 694   tiling clone,   694/875
(79 %)
28 diff
(96.8 %id)
BG478111 melanotic melanoma, skin .a 1 to 678 1 to 680       680/749
(90 %)
15 diff
(98.0 %id)
BI549288 brain, hippocampus .a 2 to 757 6 to 770       765/934
(81 %)
22 diff
(97.7 %id)
TI_44167418   .a 2 to 757 85 to 849       765/1013
(75 %)
22 diff
(97.9 %id)
NM_000275.2   .a 2 to 3137 1 to 3136   RefSeq, AAA   3136/3136
(100 %)
0 diff
(100 %id)
CB994934 placenta, pre-eclamptic placenta .a 5 to 765 23 to 787       765/791
(96 %)
25 diff
(96.9 %id)
DR000803 fetal brain .a 38 to 671 1 to 633       633/633
(100 %)
4 diff
(99.4 %id)
M99564 brain, and melanocyte .a 60 to 3129 1 to 3070   tiling clone,   3070/3070
(100 %)
2 diff
(100.0 %id)
M97901 skin .a 973 to 1368 1 to 396       396/396
(100 %)
0 diff
(100 %id)
DB183797 liver, tumor tissue .a 1041 to 1603 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BG760895 melanotic melanoma, high MDR (cell line), skin .a 1325 to 2100 1 to 775       775/775
(100 %)
2 diff
(99.8 %id)
BG761640 melanotic melanoma, high MDR (cell line), skin .a 1325 to 2063 1 to 739       739/779
(94 %)
4 diff
(99.5 %id)
DB051415 testis .a 1340 to 1888 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
BX371751 Placenta Cot 25-normalized .a 1349 to 2250 902 to 1       902/902
(100 %)
14 diff
(98.5 %id)
BX375094 Neuroblastoma Cot 25-normalized .a 1511 to 2063 1 to 554       554/554
(100 %)
3 diff
(99.5 %id)
BM764701 Ascites, stomach .a 1582 to 2208 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
DA360311 subthalamic nucleus .a 1638 to 2205 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BX283620 melanotic melanoma, high MDR (cell line), skin .a 1757 to 2257 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
BG765188 melanotic melanoma, high MDR (cell line), skin .a 1757 to 2404 1 to 648       648/649
(99 %)
3 diff
(99.6 %id)
T29709 synovial membrane .a 1928 to 2156 1 to 229       229/229
(100 %)
1 diff
(99.6 %id)
R52315 whole brain .a 1953 to 2400 8 to 459       453/459
(98 %)
10 diff
(97.9 %id)
AW951510   .a 1954 to 2457 1 to 509       509/513
(99 %)
15 diff
(97.1 %id)
AU140078 placenta .a 2020 to 2543 2 to 527   capped   526/739
(71 %)
4 diff
(99.5 %id)
BX375093 Neuroblastoma Cot 25-normalized .a 2189 to 3099 935 to 28   AAA   908/918
(98 %)
6 diff
(99.4 %id)
BX398277 Placenta Cot 25-normalized .a 2189 to 3109 920 to 1   tiling clone,   920/1038
(88 %)
7 diff
(99.4 %id)
BU681148 lung .a 2458 to 3137 697 to 19   AAA   679/679
(100 %)
2 diff
(99.8 %id)
TI_149287760   .a 2538 to 3137 706 to 108   AAA   599/981
(61 %)
1 diff
(99.9 %id)
AI097486 heart .a 2572 to 3137 566 to 1       566/566
(100 %)
2 diff
(99.7 %id)
AA062643 pineal gland .a 2659 to 2824 1 to 168   fully sequenced,   168/168
(100 %)
1 diff
(99.5 %id)
R54479 whole brain .a 2720 to 3141 430 to 5   tiling clone,   426/433
(98 %)
0 diff
(100 %id)
AA063005 pineal gland .a 2794 to 3106 313 to 1   fully sequenced,   313/313
(100 %)
1 diff
(99.7 %id)
H98884.
matches multiple genes
melanocyte .a 2830 to 3137 308 to 1     also hits gene NAP1L1 308/309
(99 %)
2 diff
(99.4 %id)
BC012097 Skin, melanotic melanoma. .b 1 to 3064 1 to 3064 exact tiling clone, available from MGC, AAA   3064/3064
(100 %)
2 diff
(100.0 %id)
AL543933 placenta, Placenta Cot 25-normalized .c 1 to 888 1 to 898   tiling clone,   787/898
(87 %)
29 diff
(96.8 %id)
BM926459 pooled lung and spleen .d 1 to 1012 15 to 1030 F194V L207V V230G A235G V237M ... tiling clone,   1016/1109
(91 %)
26 diff
(97.7 %id)
BG388843 embryonal carcinoma, cell line, testis .e 1 to 750 1 to 751 G9R A10C D11G L12P K13* tiling clone,   751/764
(98 %)
9 diff
(98.9 %id)
DB522304 testis .f 1 to 454 1 to 454 L15X P130S tiling clone, Submitted on the opposite strand 454/456
(99 %)
2 diff
(99.6 %id)
BM695542 eye, optic nerve .g 1 to 430 1 to 430 E7G T8D N9Q I10Y Q11P ... tiling clone, fully sequenced,   430/430
(100 %)
3 diff
(99.4 %id)
BU728954 eye, optic nerve .g 415 to 1074 676 to 19   tiling clone, fully sequenced, AAA   658/658
(100 %)
3 diff
(99.6 %id)
DA202245 brain .h 1 to 580 2 to 581 exact tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
DB447207 testis .i 1 to 425 1 to 425   tiling clone,   425/425
(100 %)
0 diff
(100 %id)
DB456871 testis .i 1 to 382 1 to 383       383/384
(99 %)
4 diff
(99.0 %id)
DB038762 testis .i 16 to 591 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DB455375.
matches multiple genes
testis .i 93 to 551 1 to 459     also hits gene skerkeyby 459/460
(99 %)
1 diff
(99.8 %id)
DB062636 testis .j-u 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
AA456432   Gene OCA2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC