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Gene FAM71F1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
66 supporting clones for gene FAM71F1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB446232 testis .a -8 to 441 1 to 452       452/452
(100 %)
13 diff
(97.2 %id)
AF367470 testis .a 1 to 1579 4 to 1582 exact tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1582/1583
(99 %)
5 diff
(99.7 %id)
NM_032599.2   .a 1 to 1715 4 to 1718 exact RefSeq, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 1718/1718
(100 %)
0 diff
(100 %id)
DB083990 testis .a 1 to 563 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
DB049436 testis .a 5 to 567 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BI827539 brain, medulla .a 12 to 803 1 to 790       790/790
(100 %)
9 diff
(98.9 %id)
TI_57172023   .a 14 to 746 75 to 805       731/862
(84 %)
21 diff
(97.6 %id)
CV030354 mixed .a 51 to 630 1 to 580       580/580
(100 %)
0 diff
(100 %id)
CN367609 embryonic stem cells, cell lines H1, H7, andH9 .a 483 to 886 1 to 408       404/408
(99 %)
4 diff
(99.1 %id)
AK313608 testis .b 1 to 1079 2 to 1080 exact tiling clone,   1080/1080
(100 %)
0 diff
(100 %id)
BC037248 Brain, adult medulla .b 12 to 1573 1 to 1562 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 1562/1562
(100 %)
4 diff
(99.8 %id)
TI_1948152441   .b 45 to 768 123 to 848   fully sequenced,   726/848
(85 %)
10 diff
(98.9 %id)
TI_1948152572   .b 45 to 590 125 to 669   fully sequenced,   545/669
(81 %)
6 diff
(99.2 %id)
TI_1948152719   .b 45 to 515 126 to 595   fully sequenced, AAA   470/595
(78 %)
10 diff
(98.4 %id)
TI_1948152849   .b 45 to 768 121 to 844   fully sequenced, AAA   724/844
(85 %)
7 diff
(99.2 %id)
TI_1948152720   .b 454 to 1075 752 to 130   fully sequenced,   623/752
(82 %)
0 diff
(100 %id)
BX100346   .b 472 to 975 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
TI_1948152573   .b 560 to 1075 645 to 130   fully sequenced,   516/645
(80 %)
0 diff
(100 %id)
TI_1948152442   .b 707 to 1075 500 to 132   fully sequenced,   369/500
(73 %)
0 diff
(100 %id)
TI_1948152850   .b 707 to 1075 500 to 132   fully sequenced,   369/500
(73 %)
0 diff
(100 %id)
AK310308 testis .c 1 to 1195 1 to 1195 exact tiling clone,   1195/1195
(100 %)
1 diff
(100.0 %id)
AK093161 testis .d 1 to 1574 1 to 1571 exact tiling clone, available from FLJ,   1571/1571
(100 %)
1 diff
(100.0 %id)
AX747964   .d 1 to 1574 1 to 1571 exact     1571/1571
(100 %)
1 diff
(100.0 %id)
DB025040 testis .d 2 to 560 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
H56770   .d 962 to 1235 1 to 274       274/274
(100 %)
3 diff
(99.0 %id)
DB336435 testis .d 1047 to 1574 528 to 1       528/528
(100 %)
0 diff
(100 %id)
BC032842 testis .e 1 to 2761 1 to 2761 exact tiling clone, available from MGC, AAA   2761/2761
(100 %)
6 diff
(99.8 %id)
BG723812 testis .e 1 to 706 1 to 704   available from MGC,   704/704
(100 %)
7 diff
(99.1 %id)
DB455695 testis .e 27 to 498 1 to 472       472/472
(100 %)
0 diff
(100 %id)
DB070320 testis .e 28 to 550 2 to 524   capped   523/523
(100 %)
2 diff
(99.7 %id)
AL049052 testis .e 124 to 716 1 to 593       593/593
(100 %)
5 diff
(99.2 %id)
AA393064   .e 1832 to 2062 1 to 231       231/231
(100 %)
1 diff
(99.6 %id)
DB340109 testis .e 2082 to 2629 549 to 1       549/549
(100 %)
5 diff
(99.1 %id)
DB521129 testis .e 2208 to 2629 1 to 422     Submitted on the opposite strand 422/422
(100 %)
0 diff
(100 %id)
BE502243 pooled germ cell tumors .e 2243 to 2631 389 to 1       389/389
(100 %)
0 diff
(100 %id)
AA435609   .e 2244 to 2632 389 to 1       389/389
(100 %)
1 diff
(99.8 %id)
AI831456 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 2262 to 2758 497 to 1       497/497
(100 %)
0 diff
(100 %id)
AI015953   .e 2273 to 2761 492 to 4       489/492
(99 %)
0 diff
(100 %id)
BE082769 breast .e 2319 to 2689 15 to 384       370/384
(96 %)
6 diff
(98.5 %id)
AA860347   .e 2321 to 2632 312 to 1       312/312
(100 %)
1 diff
(99.7 %id)
DB511324 testis .e 2329 to 2759 1 to 428   AAA Submitted on the opposite strand 428/428
(100 %)
6 diff
(98.6 %id)
AA889558   .e 2345 to 2632 288 to 1       288/288
(100 %)
0 diff
(100 %id)
DB514683 testis .e 2355 to 2759 1 to 404     Submitted on the opposite strand 404/404
(100 %)
6 diff
(98.6 %id)
AA872979 pooled germ cell tumors .e 2378 to 2629 252 to 1       252/252
(100 %)
1 diff
(99.7 %id)
BF964130 nervous_normal .e 2403 to 2650 33 to 280       248/280
(88 %)
6 diff
(97.9 %id)
DB046579 testis .f 1 to 571 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
DB057794 testis .f 1 to 472 2 to 476   capped   475/475
(100 %)
3 diff
(99.4 %id)
BI559780 testis .f 13 to 890 1 to 887 Q46R N47T Q48R T49H W50G ... tiling clone,   883/1003
(88 %)
24 diff
(97.7 %id)
TI_44348040   .f 19 to 890 94 to 974 Q46R N47T Q48R T49H W50G ...     877/1090
(80 %)
27 diff
(97.6 %id)
DB035639 testis .f 19 to 588 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
AK302221 testis .g 1 to 896 1 to 896 exact tiling clone,   896/896
(100 %)
3 diff
(99.7 %id)
DC398306 testis .g 1 to 555 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
DC398593 testis .g 1 to 575 1 to 575       575/577
(99 %)
3 diff
(99.5 %id)
H56769   .g 27 to 295 1 to 270   tiling clone,   270/274
(98 %)
2 diff
(99.3 %id)
DC394838 testis .h 1 to 548 1 to 548   tiling clone,   548/548
(100 %)
0 diff
(100 %id)
AK310426 testis .h 33 to 905 1 to 873 exact tiling clone,   873/873
(100 %)
0 diff
(100 %id)
DC401897 testis .h 33 to 588 1 to 556       556/556
(100 %)
0 diff
(100 %id)
BM564150 brain, medulla .i 1 to 662 11 to 671 exact tiling clone,   661/1111
(59 %)
10 diff
(99.1 %id)
BM563511 brain, medulla .j -9 to 967 12 to 997 S85L E109G S110E E111* available from MGC,   986/1142
(86 %)
39 diff
(96.6 %id)
BC040906 Brain, adult medulla .j 1 to 1800 3 to 1802 S85L tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 1802/1802
(100 %)
3 diff
(99.9 %id)
DB033527 testis .k 1 to 548 2 to 549   tiling clone, capped   548/548
(100 %)
2 diff
(99.7 %id)
DB043944 testis .k 44 to 626 2 to 584 exact tiling clone, capped   583/583
(100 %)
1 diff
(99.9 %id)
DB050091 testis .l 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
3 diff
(99.5 %id)
BX118282   .m 1 to 387 1 to 387 exact tiling clone, AAA   387/387
(100 %)
0 diff
(100 %id)
AI799013 pooled .m 13 to 386 381 to 8       374/381
(98 %)
0 diff
(100 %id)
AW072440 pooled .m 13 to 388 379 to 4       376/379
(99 %)
0 diff
(100 %id)
AW173341 pooled .m 13 to 389 381 to 5       377/381
(98 %)
0 diff
(100 %id)
AA977595 pooled .m 16 to 388 375 to 5       371/375
(98 %)
0 diff
(100 %id)
AI910986 pooled .m 27 to 389 372 to 10       363/372
(97 %)
0 diff
(100 %id)
AW663222 pooled .m 33 to 386 361 to 8       354/361
(98 %)
0 diff
(100 %id)
AA620943   .m 34 to 388 361 to 7       355/361
(98 %)
0 diff
(100 %id)
AA913759 pooled .m 67 to 388 326 to 5       322/326
(98 %)
0 diff
(100 %id)
AI208578   .m 67 to 388 325 to 4       322/325
(99 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C