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Gene RPSAP59andNXF3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
151 supporting clones for gene RPSAP59andNXF3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB252463 uterus .a 1 to 565 2 to 566   tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DB061402 testis .a 79 to 623 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB051316 testis .a 89 to 659 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB071420 testis .a 90 to 635 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB098617 testis .a 90 to 655 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB010299 colon, tumor tissue .a 91 to 635 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB026332 testis .a 91 to 656 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB061192 testis .a 92 to 573 2 to 485   capped   484/484
(100 %)
2 diff
(99.6 %id)
DA462063 tongue, tumor tissue .a 94 to 675 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB040798 testis .a 94 to 652 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB083357 testis .a 105 to 665 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA916964 small intestine .a 108 to 662 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB034161 testis .a 108 to 687 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB060999 testis .a 108 to 632 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DB061078 testis .a 108 to 646 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
DB061799 testis .a 108 to 660 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB065424 testis .a 108 to 647 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DB065756 testis .a 108 to 682 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB067854 testis .a 108 to 643 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DB071577 testis .a 108 to 654 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB075227 testis .a 108 to 649 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB032887 testis .a 109 to 682 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB077232 testis .a 109 to 689 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB451364 testis .a 115 to 576 1 to 462       462/462
(100 %)
3 diff
(99.4 %id)
DA042331 bladder .a 116 to 635 2 to 523   capped   522/522
(100 %)
4 diff
(99.3 %id)
DB091578 testis .a 116 to 667 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA934648 Spleen .a 118 to 707 2 to 591   capped   590/591
(99 %)
3 diff
(99.5 %id)
DB070620 testis .a 118 to 669 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB088643 testis .a 118 to 655 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DB100584 testis .a 118 to 718 2 to 603   capped   602/602
(100 %)
2 diff
(99.7 %id)
DB066540 testis .a 122 to 651 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DB090901 testis .a 122 to 707 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB084017 testis .a 123 to 697 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA650484   .a 125 to 635 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
DB026966 testis .a 125 to 676 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DB065602 testis .a 125 to 703 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB084031 testis .a 125 to 674 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DB093011 testis .a 125 to 679 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DB471768 hippocampus .a 126 to 630 1 to 505       505/505
(100 %)
0 diff
(100 %id)
DB070180 testis .a 130 to 667 2 to 542   capped   541/541
(100 %)
3 diff
(99.5 %id)
CR615935 Placenta Cot 25-normalized .a 133 to 2025 1 to 1893 exact     1893/1893
(100 %)
0 diff
(100 %id)
BX337418 Placenta Cot 25-normalized .a 133 to 1155 1 to 1022   fully sequenced,   1022/1022
(100 %)
6 diff
(99.5 %id)
BM749063 stomach .a 134 to 538 15 to 407       393/407
(96 %)
6 diff
(98.6 %id)
DB034150 testis .a 134 to 703 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB028667 testis .a 136 to 635 2 to 501   capped   500/500
(100 %)
2 diff
(99.6 %id)
DB044406 testis .a 136 to 677 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB051032 testis .a 136 to 714 2 to 582   capped   579/581
(99 %)
6 diff
(99.0 %id)
DB064612 testis .a 136 to 721 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB069964 testis .a 136 to 659 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DB098175 testis .a 139 to 393 2 to 259   capped   258/258
(100 %)
3 diff
(98.9 %id)
BF172751 blood .a 149 to 460 1 to 311       311/312
(99 %)
6 diff
(98.1 %id)
DB085030 testis .a 157 to 720 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB083238 testis .a 158 to 710 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB040243 testis .a 161 to 719 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DB065805 testis .a 162 to 727 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
DB051805 testis .a 163 to 712 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
AF346619 testis .a 164 to 2056 1 to 1893 exact AAA   1893/1893
(100 %)
1 diff
(100.0 %id)
AJ277527 testis .a 164 to 2056 1 to 1893 exact tiling clone, AAA   1893/1893
(100 %)
0 diff
(100 %id)
DA591146 lung .a 164 to 706 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
N28339 melanocyte .a 164 to 545 1 to 382       382/506
(75 %)
5 diff
(99.1 %id)
NM_022052.1   .a 164 to 2056 1 to 1893 exact RefSeq, AAA   1893/1893
(100 %)
0 diff
(100 %id)
DB019706 testis .a 164 to 713 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB037614 testis .a 164 to 732 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB038909 testis .a 164 to 716 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB040583 testis .a 164 to 715 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB041300 testis .a 164 to 717 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB050162 testis .a 164 to 736 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB050209 testis .a 164 to 738 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB061074 testis .a 164 to 680 2 to 518   capped   517/517
(100 %)
0 diff
(100 %id)
DB063786 testis .a 164 to 695 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DB064184 testis .a 164 to 707 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB068773 testis .a 164 to 705 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB072907 testis .a 164 to 718 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB078843 testis .a 164 to 742 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB089655 testis .a 164 to 724 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB089659 testis .a 164 to 723 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB092210 testis .a 164 to 711 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB093311 testis .a 164 to 698 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB093337 testis .a 164 to 714 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB098821 testis .a 164 to 757 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
BM743136 stomach .a 167 to 819 1 to 651       651/651
(100 %)
3 diff
(99.6 %id)
BM744580 stomach .a 167 to 618 1 to 451       451/451
(100 %)
1 diff
(99.8 %id)
DB053645 testis .a 167 to 733 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
TI_57175536   .a 170 to 1008 69 to 912       840/912
(92 %)
16 diff
(98.3 %id)
BC031616 Brain, adult medulla .a 171 to 2056 1 to 1886 exact available from MGC, AAA   1886/1886
(100 %)
0 diff
(100 %id)
BI831659 brain, medulla .a 171 to 1008 1 to 843       839/843
(99 %)
11 diff
(98.7 %id)
DB030659 testis .a 173 to 760 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DB033263 testis .a 195 to 778 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB091890 testis .a 195 to 635 2 to 442   capped   441/441
(100 %)
0 diff
(100 %id)
BP369864 testis .a 195 to 776 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DB462211 testis .a 196 to 667 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
DB065801 testis .a 197 to 760 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB077836 testis .a 232 to 801 2 to 571   capped   570/571
(99 %)
2 diff
(99.7 %id)
CV030194 mixed .a 235 to 855 1 to 621       621/636
(97 %)
8 diff
(98.8 %id)
TI_1948136859   .a 235 to 1024 125 to 917       793/1362
(58 %)
30 diff
(97.8 %id)
TI_1948136860   .a 235 to 1023 142 to 930       789/1244
(63 %)
12 diff
(99.1 %id)
TI_1948137197   .a 235 to 855 130 to 754       625/1417
(44 %)
29 diff
(98.0 %id)
TI_1948137198   .a 235 to 773 130 to 669       540/1233
(43 %)
17 diff
(98.7 %id)
TI_1948137540   .a 235 to 812 126 to 706       581/1405
(41 %)
10 diff
(99.3 %id)
TI_1948137541   .a 235 to 1131 138 to 1036       899/1202
(74 %)
18 diff
(98.6 %id)
TI_1948137890   .a 235 to 1011 133 to 917       785/1260
(62 %)
23 diff
(98.2 %id)
BM755614 stomach .a 507 to 986 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
TI_1948137543   .a 930 to 1829 1046 to 130       917/1367
(67 %)
17 diff
(98.8 %id)
TI_1948136862   .a 1015 to 1818 942 to 139       804/1277
(62 %)
7 diff
(99.5 %id)
BX337417 Placenta Cot 25-normalized .a 1094 to 2025 927 to 1   fully sequenced,   927/927
(100 %)
11 diff
(98.9 %id)
TI_1948136861   .a 1127 to 1818 834 to 140       695/1039
(66 %)
7 diff
(99.4 %id)
TI_1948137542   .a 1136 to 1829 819 to 124       696/1037
(67 %)
6 diff
(99.5 %id)
TI_1948137892   .a 1229 to 1829 736 to 132       605/1371
(44 %)
14 diff
(99.0 %id)
CR600948 T cells (Jurkat cell line) Cot10-normalized .a 1230 to 2059 1 to 830   tiling clone,   830/830
(100 %)
0 diff
(100 %id)
AL559279 T cells from T cell leukemia .a 1230 to 2059 1 to 830   fully sequenced,   830/830
(100 %)
1 diff
(99.9 %id)
TI_1948137891   .a 1230 to 1818 729 to 137       593/1074
(55 %)
26 diff
(97.6 %id)
BF093616 testis_normal .a 1276 to 1637 1 to 362       362/363
(99 %)
6 diff
(98.4 %id)
BU567473 testis .a 1287 to 1947 9 to 678       670/769
(87 %)
15 diff
(98.1 %id)
TI_1948137199   .a 1287 to 1818 654 to 121       534/1049
(50 %)
6 diff
(99.5 %id)
BF378081 testis_normal .a 1289 to 1579 1 to 313       254/315
(80 %)
20 diff
(93.7 %id)
BM744947 stomach .a 1289 to 1796 1 to 509       509/509
(100 %)
2 diff
(99.7 %id)
BM743466 stomach .a 1325 to 1502 1 to 178       178/178
(100 %)
1 diff
(99.5 %id)
TI_1948137200   .a 1325 to 1829 634 to 127       508/1366
(37 %)
11 diff
(99.2 %id)
DB336600 testis .a 1478 to 2056 579 to 1       579/579
(100 %)
0 diff
(100 %id)
BF093041 testis_normal .a 1618 to 1763 1 to 145       145/145
(100 %)
2 diff
(98.7 %id)
DB515296 testis .a 1626 to 2054 1 to 429     Submitted on the opposite strand 429/431
(99 %)
1 diff
(99.8 %id)
AL559278 T cells from T cell leukemia .a 1655 to 2020 371 to 5   fully sequenced,   367/371
(98 %)
4 diff
(99.0 %id)
AJ277660 fetal brain .b 1 to 1081 1 to 1081   tiling clone,   1081/1081
(100 %)
0 diff
(100 %id)
BF091518 testis_normal .b 1072 to 1354 9 to 291   tiling clone,   283/291
(97 %)
6 diff
(98.0 %id)
AK302447 testis .c 1 to 1530 1 to 1530 exact tiling clone,   1530/1530
(100 %)
1 diff
(100.0 %id)
BI010374 lung_normal .c 530 to 1108 579 to 1       579/579
(100 %)
0 diff
(100 %id)
BM755180 stomach .c 607 to 1116 1 to 512       514/512
(100 %)
7 diff
(98.7 %id)
DB043132 testis .c 711 to 1263 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BF376145 testis_normal .c 845 to 1237 1 to 393       393/393
(100 %)
7 diff
(98.3 %id)
BF376130 testis_normal .c 854 to 1121 1 to 268       268/268
(100 %)
3 diff
(98.9 %id)
AK057086 small intestine .c 1482 to 3757 1 to 2276   tiling clone, available from FLJ,   2276/2276
(100 %)
0 diff
(100 %id)
CD243958 testis .c 2188 to 2900 1 to 723       723/922
(78 %)
23 diff
(97.6 %id)
BU171243 testis .c 2314 to 3004 1 to 695       695/783
(88 %)
18 diff
(97.8 %id)
BE938263 testis_normal .c 2867 to 3113 259 to 14       246/259
(94 %)
0 diff
(100 %id)
DB337999 testis .c 3255 to 3767 513 to 1   tiling clone,   513/513
(100 %)
0 diff
(100 %id)
DB527648 testis .c 3279 to 3755 1 to 477     Submitted on the opposite strand 477/479
(99 %)
1 diff
(99.8 %id)
DB540513 hippocampus .c 3280 to 3757 1 to 478     Submitted on the opposite strand 478/478
(100 %)
1 diff
(99.8 %id)
DB516841 testis .c 3301 to 3767 1 to 467     Submitted on the opposite strand 467/467
(100 %)
0 diff
(100 %id)
BE041882 borderline ovarian carcinoma, ovary .c 3663 to 3760 1 to 98       98/110
(89 %)
4 diff
(96.4 %id)
AK302586 testis .d 1 to 1195 2 to 1196 exact tiling clone,   1196/1196
(100 %)
0 diff
(100 %id)
DB071671 testis .d 1 to 533 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA915862 small intestine .e 1 to 520 2 to 521   tiling clone, capped   520/520
(100 %)
0 diff
(100 %id)
AL041685 testis .e 1001 to 1543 1 to 543   tiling clone,   543/545
(99 %)
1 diff
(99.9 %id)
DB331644 small intestine .e 1517 to 2054 538 to 1   tiling clone,   538/538
(100 %)
0 diff
(100 %id)
AL041686 testis .e 1561 to 2048 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AK294826 brain .f 1 to 604 1 to 604 exact tiling clone,   604/1132
(53 %)
1 diff
(100.0 %id)
DC321927 brain .f 1 to 536 1 to 536       536/536
(100 %)
0 diff
(100 %id)
DC321928 brain .f 1 to 547 1 to 547       547/547
(100 %)
0 diff
(100 %id)
BF378100 testis_normal .g 1 to 606 626 to 16 S128F V129C L130S A131R F132L ... tiling clone,   610/633
(96 %)
8 diff
(98.8 %id)
BF851986 lung_normal .h 1 to 535 18 to 549 Q12R T13H T14P H15L S16L ... tiling clone,   532/549
(96 %)
14 diff
(97.5 %id)
BX281560 liver and spleen .i-u 1 to 490 1 to 490 K52R tiling clone,   490/490
(100 %)
1 diff
(99.8 %id)
AA010370 liver and spleen .i-u 1 to 279 1 to 280       280/280
(100 %)
3 diff
(99.0 %id)
AA010599 liver and spleen .i-u 2 to 184 1 to 183       183/183
(100 %)
0 diff
(100 %id)
AA776821   .i-u 239 to 664 427 to 2   tiling clone,   426/427
(99 %)
0 diff
(100 %id)
AA010600 liver and spleen .i-u 272 to 662 396 to 1       396/419
(94 %)
7 diff
(98.4 %id)
AA774546   .i-u 371 to 661 291 to 1       291/291
(100 %)
0 diff
(100 %id)
AA010371 liver and spleen .i-u 416 to 661 246 to 1       246/246
(100 %)
2 diff
(99.2 %id)
DA284620 corpus callosum .j 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
AA343662 gall bladder Gene RPSAP59andNXF3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI