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Gene YBX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
259 representative clones for gene YBX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_004559.3   .a 1 to 1539 1 to 1539 exact RefSeq, AAA   1539/1539
(100 %)
0 diff
(100 %id)
CR988066 T-Lymphocytes .a 6 to 882 1 to 879   tiling clone,   879/879
(100 %)
7 diff
(99.3 %id)
CR626201 T cells (Jurkat cell line) .a 7 to 1599 1 to 1593   tiling clone,   1593/1593
(100 %)
0 diff
(100 %id)
BC070084 testis .a 34 to 1539 1 to 1506   tiling clone, available from MGC, AAA   1506/1506
(100 %)
4 diff
(99.8 %id)
CR591111 fetal brain .a 36 to 1444 1 to 1409       1409/1409
(100 %)
0 diff
(100 %id)
BX462547 T cells (Jurkat cell line) .a 40 to 1101 1 to 1048       1048/1084
(96 %)
16 diff
(98.6 %id)
BX405566 fetal liver, Liver .a 40 to 885 1 to 845   fully sequenced,   845/845
(100 %)
8 diff
(99.1 %id)
CR590526 fetal brain .a 41 to 1545 1 to 1505       1505/1505
(100 %)
0 diff
(100 %id)
CR594786 fetal brain .a 41 to 1530 1 to 1490       1490/1490
(100 %)
0 diff
(100 %id)
CR595367 Placenta Cot 25-normalized .a 41 to 1484 1 to 1444       1444/1444
(100 %)
0 diff
(100 %id)
CR597479 T cells (Jurkat cell line) .a 41 to 1502 1 to 1462       1462/1462
(100 %)
0 diff
(100 %id)
CR599304 T cells (Jurkat cell line) .a 41 to 1546 1 to 1506       1506/1506
(100 %)
0 diff
(100 %id)
CR600196 fetal liver .a 41 to 1530 1 to 1490       1490/1490
(100 %)
0 diff
(100 %id)
CR603148 T cells (Jurkat cell line) .a 41 to 1542 1 to 1502       1502/1502
(100 %)
0 diff
(100 %id)
CR603575 fetal brain .a 41 to 1547 1 to 1507       1507/1507
(100 %)
0 diff
(100 %id)
CR605858 neuroblastoma .a 41 to 1541 1 to 1501       1501/1501
(100 %)
0 diff
(100 %id)
CR613748 neuroblastoma .a 41 to 1520 1 to 1480       1480/1480
(100 %)
0 diff
(100 %id)
CR619575 fetal brain .a 41 to 1527 1 to 1487       1487/1487
(100 %)
0 diff
(100 %id)
CR625314 T cells (Jurkat cell line) .a 41 to 1544 1 to 1504       1504/1504
(100 %)
0 diff
(100 %id)
BX335101 Placenta Cot 25-normalized .a 41 to 1082 1 to 1036       1036/1119
(92 %)
18 diff
(98.4 %id)
BX385865 Placenta Cot 25-normalized .a 41 to 1085 1 to 1040       1040/1083
(96 %)
16 diff
(98.6 %id)
CR983806 T-Lymphocytes .a 42 to 857 1 to 817       817/817
(100 %)
2 diff
(99.8 %id)
BC098435 Skin, melanotic melanoma, high MDR. .a 43 to 1489 1 to 1447   AAA   1447/1447
(100 %)
0 diff
(100 %id)
CR990214 T-Lymphocytes .a 43 to 862 1 to 824       824/827
(99 %)
10 diff
(98.8 %id)
BM806650 leiomyosarcoma, uterus .a 44 to 912 1 to 874       874/1093
(79 %)
9 diff
(99.2 %id)
BQ230220 large cell carcinoma, lung .a 44 to 912 1 to 872       872/880
(99 %)
9 diff
(99.0 %id)
BQ436332 epithelioid carcinoma, Pancreas .a 45 to 895 1 to 857       857/877
(97 %)
10 diff
(98.9 %id)
BQ228586 embryonal carcinoma, cell line, testis .a 45 to 928 1 to 886       886/886
(100 %)
9 diff
(99.0 %id)
BU170800 eye, retinoblastoma .a 45 to 829 1 to 786       786/884
(88 %)
6 diff
(99.4 %id)
BU176537 eye, retinoblastoma .a 45 to 954 1 to 916       916/917
(99 %)
9 diff
(99.1 %id)
BX464634 T cells (Jurkat cell line) .a 46 to 1138 1 to 1083       1083/1086
(99 %)
42 diff
(96.2 %id)
BU158648 embryonal carcinoma, cell line, testis .a 46 to 829 1 to 786       786/894
(87 %)
4 diff
(99.6 %id)
CD580569 brain .a 46 to 830 1 to 785       785/791
(99 %)
15 diff
(98.2 %id)
CR995295 T-Lymphocytes .a 46 to 874 1 to 829       829/829
(100 %)
3 diff
(99.7 %id)
CR977439 T-Lymphocytes .a 46 to 829 1 to 786       786/801
(98 %)
5 diff
(99.4 %id)
CR995996 T-Lymphocytes .a 46 to 846 1 to 804       804/809
(99 %)
4 diff
(99.6 %id)
CR995095 T-Lymphocytes .a 46 to 870 1 to 825       825/825
(100 %)
1 diff
(99.9 %id)
CR988411 T-Lymphocytes .a 46 to 861 1 to 816       816/816
(100 %)
0 diff
(100 %id)
BC106045 Skin, melanotic melanoma. .a 47 to 1539 1 to 1493   AAA   1493/1493
(100 %)
0 diff
(100 %id)
CR597183 B cells (Ramos cell line) Cot 25-normalized .a 47 to 1517 1 to 1471       1471/1471
(100 %)
0 diff
(100 %id)
CR603903 HeLa cells Cot 25-normalized .a 47 to 1522 1 to 1476       1476/1476
(100 %)
0 diff
(100 %id)
CR607838 Neuroblastoma Cot 10-normalized .a 47 to 1519 1 to 1473       1473/1473
(100 %)
0 diff
(100 %id)
CR609077 B cells (Ramos cell line) .a 47 to 1523 1 to 1477       1477/1477
(100 %)
0 diff
(100 %id)
CR614014 placenta .a 47 to 1549 1 to 1503       1503/1503
(100 %)
0 diff
(100 %id)
CR614365 fetal brain .a 47 to 1541 1 to 1495       1495/1495
(100 %)
0 diff
(100 %id)
CR618356 Neuroblastoma Cot 10-normalized .a 47 to 1505 1 to 1459       1459/1459
(100 %)
0 diff
(100 %id)
CR623505 B cells (Ramos cell line) .a 47 to 1534 1 to 1488       1488/1488
(100 %)
0 diff
(100 %id)
BX417677 placenta .a 47 to 1040 1 to 983       983/997
(98 %)
19 diff
(98.1 %id)
BX452971 placenta .a 47 to 999 1 to 943       943/943
(100 %)
35 diff
(96.3 %id)
BX443388 T cells (Jurkat cell line) .a 47 to 1138 1 to 1092       1092/1093
(99 %)
16 diff
(98.6 %id)
BM451561 eye, retinoblastoma .a 47 to 912 1 to 873       873/1068
(81 %)
18 diff
(98.4 %id)
BM451167 eye, retinoblastoma .a 47 to 910 1 to 872       870/892
(97 %)
21 diff
(97.7 %id)
BM477292 lymph, lymphoma, cell line .a 47 to 1123 1 to 1093       1093/1134
(96 %)
36 diff
(96.9 %id)
BM470951 melanotic melanoma, skin .a 47 to 912 1 to 869       869/1015
(85 %)
25 diff
(97.6 %id)
BM468966 embryonal carcinoma, cell line, testis .a 47 to 1066 1 to 1036       1036/1037
(99 %)
25 diff
(97.6 %id)
CX867860 embryonic stem .a 47 to 836 1 to 790       790/790
(100 %)
0 diff
(100 %id)
CX788498 human embryonic stem cells .a 47 to 868 1 to 822       822/822
(100 %)
0 diff
(100 %id)
DR762900 embryonic stem .a 47 to 892 1 to 846       846/846
(100 %)
0 diff
(100 %id)
CR999560 T-Lymphocytes .a 47 to 855 1 to 809       809/810
(99 %)
1 diff
(99.9 %id)
CR998096 T-Lymphocytes .a 47 to 980 1 to 931       931/933
(99 %)
8 diff
(99.2 %id)
CR978031 T-Lymphocytes .a 47 to 875 1 to 829       829/830
(99 %)
3 diff
(99.7 %id)
CR994144 T-Lymphocytes .a 47 to 852 1 to 806       806/815
(98 %)
2 diff
(99.8 %id)
BX453408 T cells (Jurkat cell line) .a 48 to 1035 1 to 982       982/982
(100 %)
13 diff
(98.7 %id)
BX444223 fetal liver, Liver .a 48 to 1133 1 to 1069       1069/1073
(99 %)
26 diff
(97.6 %id)
BM799968 eye, retinoblastoma .a 48 to 1123 1 to 1075       1075/1102
(97 %)
37 diff
(96.7 %id)
BM806844 lymph, lymphoma, cell line .a 48 to 974 1 to 934       934/1056
(88 %)
30 diff
(97.2 %id)
BQ050696 leiomyosarcoma, uterus .a 48 to 874 1 to 835       833/998
(83 %)
17 diff
(98.3 %id)
BQ219299 epithelioid carcinoma, Pancreas .a 48 to 827 1 to 785       785/886
(88 %)
13 diff
(98.6 %id)
BQ214496 embryonal carcinoma, cell line, testis .a 48 to 967 1 to 928       928/928
(100 %)
29 diff
(96.9 %id)
BQ220241 embryonal carcinoma, cell line, testis .a 48 to 903 1 to 858       858/861
(99 %)
12 diff
(98.7 %id)
BU157085 epithelioid carcinoma, Pancreas .a 48 to 908 1 to 867       865/868
(99 %)
15 diff
(98.3 %id)
BU176418 eye, retinoblastoma .a 48 to 912 1 to 872       872/872
(100 %)
8 diff
(99.1 %id)
BU176494 eye, retinoblastoma .a 48 to 907 1 to 866       866/869
(99 %)
12 diff
(98.7 %id)
BQ440482 leiomyosarcoma, uterus .a 48 to 836 1 to 793   AAA   793/917
(86 %)
14 diff
(98.5 %id)
BU195485 eye, retinoblastoma .a 48 to 827 1 to 786       786/913
(86 %)
11 diff
(98.8 %id)
BQ435268 leiomyosarcoma, uterus .a 48 to 827 1 to 789       789/856
(92 %)
16 diff
(98.2 %id)
BQ923827 leiomyosarcoma, uterus .a 48 to 963 1 to 913       913/913
(100 %)
26 diff
(97.2 %id)
BQ961608 leiomyosarcoma, uterus .a 48 to 834 1 to 788       788/901
(87 %)
5 diff
(99.5 %id)
BQ961622 leiomyosarcoma, uterus .a 48 to 826 1 to 784       784/915
(85 %)
10 diff
(99.0 %id)
CD517333 White Matter .a 48 to 829 1 to 786       786/919
(85 %)
7 diff
(99.3 %id)
CR981597 T-Lymphocytes .a 48 to 829 1 to 784       784/789
(99 %)
4 diff
(99.5 %id)
CT002155 T-Lymphocytes .a 48 to 870 1 to 822       822/822
(100 %)
1 diff
(99.9 %id)
BC071708 Adrenal cortex, carcinoma .a 49 to 1539 1 to 1490   available from MGC, AAA   1490/1490
(100 %)
1 diff
(100.0 %id)
BC090038 Uterus, leiomyosarcoma .a 49 to 1539 1 to 1491   AAA   1491/1491
(100 %)
0 diff
(100 %id)
CR599843 neuroblastoma .a 49 to 1504 1 to 1456       1456/1456
(100 %)
0 diff
(100 %id)
CR622381 T cells (Jurkat cell line) Cot10-normalized .a 49 to 1523 1 to 1475       1475/1475
(100 %)
0 diff
(100 %id)
BM474151 leiomyosarcoma, uterus .a 49 to 912 1 to 872       872/1016
(85 %)
17 diff
(98.4 %id)
BM564551 duodenal adenocarcinoma, cell line, small intestine .a 49 to 827 1 to 784       784/1074
(72 %)
9 diff
(99.2 %id)
BQ441745 embryonal carcinoma, cell line, testis .a 49 to 974 10 to 934       923/1084
(85 %)
24 diff
(97.8 %id)
BQ219646 epithelioid carcinoma, Pancreas .a 49 to 827 1 to 784       784/904
(86 %)
17 diff
(98.2 %id)
BQ671269 epidermoid carcinoma, cell line, salivary gland .a 49 to 829 1 to 787       787/1009
(77 %)
21 diff
(98.0 %id)
BU859773 adenocarcinoma, cell line, breast .a 49 to 908 1 to 864       864/927
(93 %)
11 diff
(98.9 %id)
CR984920 T-Lymphocytes .a 49 to 910 1 to 864       862/870
(99 %)
5 diff
(99.5 %id)
BM467905 leiomyosarcoma, uterus .a 50 to 1097 1 to 1053       1053/1093
(96 %)
61 diff
(94.5 %id)
BM469951 lymph, lymphoma, cell line .a 50 to 974 1 to 934       934/1041
(89 %)
14 diff
(98.7 %id)
BQ938818 sciatic nerve .a 50 to 912 1 to 872       872/935
(93 %)
19 diff
(98.0 %id)
BQ929451 leiomyosarcoma, uterus .a 50 to 908 1 to 870       870/910
(95 %)
20 diff
(97.9 %id)
BU902462 leiomyosarcoma, uterus .a 50 to 912 1 to 872       872/894
(97 %)
11 diff
(98.8 %id)
BU539254 adenocarcinoma, cell line, breast .a 50 to 826 1 to 785       785/933
(84 %)
18 diff
(98.1 %id)
CR986586 T-Lymphocytes .a 50 to 882 1 to 833       833/833
(100 %)
0 diff
(100 %id)
CR983987 T-Lymphocytes .a 50 to 855 1 to 807       807/812
(99 %)
3 diff
(99.7 %id)
CR617386 T cells (Jurkat cell line) .a 51 to 1533 1 to 1483       1483/1483
(100 %)
0 diff
(100 %id)
BM469932 lymph, lymphoma, cell line .a 51 to 912 1 to 867       864/1035
(83 %)
8 diff
(99.3 %id)
BQ049766 lymph, lymphoma, cell line .a 51 to 890 1 to 849       847/1075
(78 %)
11 diff
(99.0 %id)
BU154301 eye, retinoblastoma .a 51 to 882 1 to 846   AAA   844/909
(92 %)
30 diff
(96.7 %id)
BU173441 eye, retinoblastoma .a 51 to 927 1 to 886       884/888
(99 %)
17 diff
(98.1 %id)
BU167406 leiomyosarcoma, uterus .a 51 to 833 1 to 784       784/859
(91 %)
8 diff
(99.1 %id)
BQ212889 embryonal carcinoma, cell line, testis .a 52 to 912 1 to 864       864/865
(99 %)
7 diff
(99.2 %id)
BU509127 leiomyosarcoma, uterus .a 52 to 935 1 to 885       885/886
(99 %)
14 diff
(98.5 %id)
CR978167 T-Lymphocytes .a 52 to 857 1 to 806       806/806
(100 %)
0 diff
(100 %id)
CR990467 T-Lymphocytes .a 52 to 978 1 to 929       929/930
(99 %)
6 diff
(99.4 %id)
CR593602 placenta .a 53 to 1519 1 to 1467       1467/1467
(100 %)
0 diff
(100 %id)
CR606326 fetal liver .a 53 to 1533 1 to 1481       1481/1481
(100 %)
0 diff
(100 %id)
CR607423 T cells (Jurkat cell line) .a 53 to 1515 1 to 1463       1463/1463
(100 %)
0 diff
(100 %id)
BM559110 eye, retinoblastoma .a 53 to 912 1 to 864       864/1033
(83 %)
5 diff
(99.6 %id)
BM469765 lymph, lymphoma, cell line .a 53 to 826 1 to 784       784/1005
(78 %)
24 diff
(97.7 %id)
BU162783 melanotic melanoma, cell line, skin .a 53 to 912 1 to 869       869/888
(97 %)
17 diff
(98.1 %id)
CR603229 fetal brain .a 54 to 1492 1 to 1439       1439/1439
(100 %)
0 diff
(100 %id)
BX407587 placenta .a 54 to 1062 1 to 1003       1003/1007
(99 %)
24 diff
(97.7 %id)
BX416903 placenta .a 54 to 1096 1 to 1038       1038/1046
(99 %)
19 diff
(98.2 %id)
BM458379 lymph, lymphoma, cell line .a 54 to 1121 1 to 1064       1064/1104
(96 %)
27 diff
(97.6 %id)
BQ430418 embryonal carcinoma, cell line, testis .a 54 to 895 1 to 848       846/852
(99 %)
17 diff
(98.1 %id)
BU181414 epithelioid carcinoma, Pancreas .a 54 to 912 1 to 872       870/877
(99 %)
29 diff
(96.7 %id)
BQ230866 leiomyosarcoma, uterus .a 55 to 1081 1 to 1023       1023/1023
(100 %)
25 diff
(97.6 %id)
BU187009 eye, retinoblastoma .a 55 to 937 1 to 887       887/891
(99 %)
10 diff
(98.9 %id)
BQ437183 eye, retinoblastoma .a 55 to 882 1 to 834       832/838
(99 %)
17 diff
(98.0 %id)
BU178951 eye, retinoblastoma .a 55 to 968 1 to 914       914/915
(99 %)
13 diff
(98.6 %id)
BQ925361 epidermoid carcinoma, cell line, lung .a 55 to 901 1 to 854       854/912
(93 %)
14 diff
(98.5 %id)
BU538690 adenocarcinoma, cell line, breast .a 55 to 948 1 to 899       899/900
(99 %)
13 diff
(98.6 %id)
BM905779 leiomyosarcoma, uterus .a 56 to 912 1 to 859       859/965
(89 %)
11 diff
(98.9 %id)
BM458805 lymph, lymphoma, cell line .a 58 to 974 1 to 919       917/1110
(82 %)
28 diff
(97.5 %id)
BM475746 embryonal carcinoma, cell line, testis .a 58 to 912 1 to 860       860/989
(86 %)
10 diff
(99.0 %id)
BU846464 ovary, teratocarcinoma, cell line .a 58 to 912 1 to 857   AAA   857/905
(94 %)
6 diff
(99.4 %id)
CR986615 T-Lymphocytes .a 58 to 912 1 to 859       859/867
(99 %)
6 diff
(99.4 %id)
CR988501 T-Lymphocytes .a 58 to 899 1 to 842       842/842
(100 %)
0 diff
(100 %id)
AL043948 testis .a 59 to 496 1 to 438       438/438
(100 %)
0 diff
(100 %id)
BQ440387 eye, retinoblastoma .a 59 to 972 1 to 916       916/938
(97 %)
24 diff
(97.5 %id)
BQ435289 leiomyosarcoma, uterus .a 59 to 836 1 to 786       786/876
(89 %)
23 diff
(97.4 %id)
CD580544 brain .a 59 to 865 1 to 805       805/807
(99 %)
5 diff
(99.4 %id)
BM458381 lymph, lymphoma, cell line .a 61 to 1119 1 to 1071       1071/1128
(94 %)
62 diff
(94.6 %id)
BM905237 melanotic melanoma, skin .a 61 to 968 1 to 918       918/1030
(89 %)
16 diff
(98.5 %id)
BM480261 duodenal adenocarcinoma, cell line, small intestine .a 61 to 1054 1 to 1001       1001/1001
(100 %)
27 diff
(97.4 %id)
M24070   .a 61 to 1503 10 to 1452       1443/1452
(99 %)
6 diff
(99.6 %id)
BQ432316 melanotic melanoma, skin .a 62 to 903 1 to 850       850/862
(98 %)
15 diff
(98.3 %id)
BM458843 lymph, lymphoma, cell line .a 64 to 912 1 to 856       856/1141
(75 %)
15 diff
(98.7 %id)
BM460776 leiomyosarcoma, uterus .a 64 to 907 1 to 851       851/1104
(77 %)
15 diff
(98.7 %id)
CR626307 Placenta Cot 25-normalized .a 67 to 1549 1 to 1483       1483/1483
(100 %)
0 diff
(100 %id)
BX337274 Placenta Cot 25-normalized .a 67 to 1138 1 to 1070       1070/1070
(100 %)
6 diff
(99.5 %id)
CA941143 Pancreas, Purified pancreatic islet .a 82 to 517 1 to 436       436/436
(100 %)
0 diff
(100 %id)
CA843170 Pancreas, Purified pancreatic islet .a 82 to 663 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BX325629 Neuroblastoma Cot 25-normalized .a 85 to 1111 1 to 1022       1022/1022
(100 %)
8 diff
(99.3 %id)
BX353952 Neuroblastoma Cot 25-normalized .a 85 to 1105 1 to 1011       1011/1018
(99 %)
15 diff
(98.6 %id)
CX781830 human embryonic stem cells .a 92 to 924 1 to 833       833/833
(100 %)
0 diff
(100 %id)
BC015208 Uterus, leiomyosarcoma .a 109 to 1539 1 to 1431   available from MGC, AAA   1431/1431
(100 %)
0 diff
(100 %id)
CR613480 fetal liver .a 113 to 1546 1 to 1434       1434/1434
(100 %)
0 diff
(100 %id)
BX429086 T cells (Jurkat cell line) .a 113 to 997 1 to 881       881/881
(100 %)
13 diff
(98.6 %id)
BQ440184 leiomyosarcoma, uterus .a 157 to 982 1 to 828       828/859
(96 %)
15 diff
(98.3 %id)
BU931438 ovary, teratocarcinoma, cell line .a 158 to 1020 1 to 871       871/885
(98 %)
17 diff
(98.1 %id)
CX865936 embryonic stem .a 173 to 848 1 to 676       676/676
(100 %)
0 diff
(100 %id)
DR760911 embryonic stem .a 196 to 1019 1 to 824       824/824
(100 %)
0 diff
(100 %id)
AI879941.
matches multiple genes
brain, frontal lobe .a 211 to 957 749 to 4     also hits gene YBX1P1 746/749
(99 %)
13 diff
(98.3 %id)
CR617953 fetal brain .a 238 to 1517 1 to 1280       1280/1280
(100 %)
0 diff
(100 %id)
BQ437273 leiomyosarcoma, uterus .a 263 to 1090 1 to 838       838/887
(94 %)
13 diff
(98.6 %id)
CR997175 T-Lymphocytes .a 270 to 1193 1 to 929       929/939
(98 %)
10 diff
(99.0 %id)
BM456953 embryonal carcinoma, cell line, testis .a 286 to 1179 1 to 896       896/1056
(84 %)
17 diff
(98.4 %id)
CR618087 Placenta Cot 25-normalized .a 337 to 1517 1 to 1181       1181/1181
(100 %)
0 diff
(100 %id)
BM469768 lymph, lymphoma, cell line .a 338 to 1334 1 to 1010       1010/1030
(98 %)
26 diff
(97.5 %id)
BM563691 astrocytoma grade IV, cell line, brain .a 358 to 1179 1 to 822       822/996
(82 %)
1 diff
(99.9 %id)
BQ719868 sympathetic trunk .a 380 to 1179 1 to 810       810/867
(93 %)
14 diff
(98.4 %id)
BM451714 eye, retinoblastoma .a 381 to 1393 7 to 1029       1023/1044
(97 %)
34 diff
(96.8 %id)
CX787447 human embryonic stem cells .a 399 to 1244 9 to 854       846/854
(99 %)
0 diff
(100 %id)
BU902788 leiomyosarcoma, uterus .a 409 to 1315 1 to 913       913/913
(100 %)
12 diff
(98.7 %id)
BQ650880 hepatocellular carcinoma, cell line, Liver .a 415 to 1285 1 to 886       886/948
(93 %)
18 diff
(98.2 %id)
BM543158 embryonal carcinoma, cell line, testis .a 422 to 1415 1 to 1000       1000/1000
(100 %)
13 diff
(98.7 %id)
BU509008 leiomyosarcoma, uterus .a 424 to 1306 1 to 891       890/892
(99 %)
22 diff
(97.6 %id)
BG285269 adenocarcinoma, cell line, Prostate .a 431 to 1247 1 to 817       817/867
(94 %)
16 diff
(98.2 %id)
CR617437 neuroblastoma .a 435 to 1533 1 to 1099       1099/1099
(100 %)
0 diff
(100 %id)
BQ898662 dorsal root ganglia .a 469 to 1285 1 to 827       827/863
(95 %)
9 diff
(99.0 %id)
BM455005 leiomyosarcoma, uterus .a 472 to 1525 1 to 1067       1067/1068
(99 %)
32 diff
(97.1 %id)
BQ438228 leiomyosarcoma, uterus .a 494 to 1339 1 to 848       848/848
(100 %)
3 diff
(99.7 %id)
BM474733 eye, retinoblastoma .a 522 to 1424 1 to 920       920/1114
(82 %)
41 diff
(96.4 %id)
BQ431097 embryonal carcinoma, cell line, testis .a 525 to 1414 1 to 898       898/901
(99 %)
16 diff
(98.3 %id)
BX453407 T cells (Jurkat cell line) .a 531 to 1527 995 to 1       995/1002
(99 %)
6 diff
(99.5 %id)
CR606600 fetal brain .a 537 to 1546 1 to 1010       1010/1010
(100 %)
0 diff
(100 %id)
BQ947157 sciatic nerve .a 541 to 1429 1 to 892       892/895
(99 %)
14 diff
(98.5 %id)
BI861573 breast, mammary adenocarcinoma, cell line .a 574 to 1484 1 to 910       910/911
(99 %)
21 diff
(97.7 %id)
TI_227713504   .a 578 to 1546 1005 to 62   AAA   944/1001
(94 %)
28 diff
(97.3 %id)
BU193021 epithelioid carcinoma, Pancreas .a 581 to 1453 1 to 878       878/878
(100 %)
11 diff
(98.8 %id)
CR611343 HeLa cells Cot 25-normalized .a 589 to 1520 1 to 932       932/932
(100 %)
0 diff
(100 %id)
BC020164.
matches multiple genes
leiomyosarcoma, uterus, Uterus, leiomyosarcoma .a 600 to 1539 1 to 940   available from MGC, AAA also hits gene IFIH1 940/940
(100 %)
0 diff
(100 %id)
BM800771 melanotic melanoma, skin .a 601 to 1496 1 to 912       912/1040
(87 %)
21 diff
(98.0 %id)
BQ959785 leiomyosarcoma, uterus .a 610 to 1479 1 to 876       876/876
(100 %)
11 diff
(98.8 %id)
DW429741 Liver .a 611 to 972 17 to 378   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 362/397
(91 %)
14 diff
(96.5 %id)
TI_227713049   .a 618 to 1546 997 to 80   AAA   918/1010
(90 %)
22 diff
(97.9 %id)
DW466355.
matches multiple genes
Liver .a 622 to 957 13 to 348     also hits gene YBX1P1 336/352
(95 %)
7 diff
(98.1 %id)
TI_227712596   .a 627 to 1489 931 to 85   AAA   847/991
(85 %)
10 diff
(99.0 %id)
TI_154110286   .a 632 to 1546 950 to 62   AAA   889/939
(94 %)
11 diff
(98.9 %id)
TI_154107138   .a 661 to 1546 961 to 88   AAA   874/924
(94 %)
17 diff
(98.2 %id)
BM543285 embryonal carcinoma, cell line, testis .a 666 to 1544 1 to 879   AAA   879/879
(100 %)
4 diff
(99.6 %id)
TI_227714515   .a 669 to 1548 969 to 100   AAA   870/978
(88 %)
20 diff
(98.0 %id)
CR626550 T cells (Jurkat cell line) .a 675 to 1560 1 to 886       886/886
(100 %)
0 diff
(100 %id)
AW059746   .a 689 to 952 264 to 1       264/264
(100 %)
2 diff
(99.3 %id)
BM561505 blood, natural killer cells, cell line .a 696 to 1546 892 to 27   AAA Submitted on the opposite strand 866/1032
(83 %)
29 diff
(97.2 %id)
TI_149303408   .a 696 to 1506 895 to 90   AAA   806/932
(86 %)
10 diff
(99.0 %id)
TI_154062160   .a 701 to 1546 937 to 109   AAA   829/972
(85 %)
16 diff
(98.4 %id)
AA373279.
matches multiple genes
lung .a 704 to 952 1 to 246     also hits gene YBX1P1 246/246
(100 %)
6 diff
(97.6 %id)
BM928726 hepatocellular carcinoma, cell line, Liver .a 709 to 1546 885 to 44   AAA Submitted on the opposite strand 842/1014
(83 %)
7 diff
(99.4 %id)
TI_154126413   .a 710 to 1546 895 to 65   AAA   831/966
(86 %)
12 diff
(98.8 %id)
TI_227714502   .a 713 to 1546 917 to 95   AAA   823/955
(86 %)
19 diff
(98.1 %id)
TI_227714776   .a 714 to 1546 889 to 73   AAA   817/952
(85 %)
17 diff
(98.3 %id)
BU956506 adenocarcinoma, cell line, breast .a 719 to 1542 825 to 1     Submitted on the opposite strand 825/895
(92 %)
5 diff
(99.5 %id)
TI_149302691   .a 721 to 1546 884 to 65   AAA   820/940
(87 %)
11 diff
(98.9 %id)
TI_149310551   .a 723 to 1557 919 to 90   AAA   830/921
(90 %)
13 diff
(98.6 %id)
BM907681 large cell carcinoma, lung .a 728 to 1546 838 to 16   AAA Submitted on the opposite strand 823/1037
(79 %)
11 diff
(99.0 %id)
BQ652516 hepatocellular carcinoma, cell line, Liver .a 728 to 1546 869 to 44   AAA Submitted on the opposite strand 826/834
(99 %)
27 diff
(96.8 %id)
TI_149292426   .a 731 to 1546 893 to 89   AAA   805/917
(87 %)
17 diff
(98.2 %id)
BQ048903 embryonal carcinoma, cell line, testis .a 743 to 968 1 to 225   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 225/229
(98 %)
4 diff
(98.3 %id)
TI_149291484   .a 749 to 1548 874 to 88   AAA   787/897
(87 %)
12 diff
(98.7 %id)
BF588952 breast, lobullar carcinoma in situ .a 768 to 954 1 to 187     Submitted on the opposite strand 187/187
(100 %)
12 diff
(93.6 %id)
AW601653 breast .a 787 to 950 1 to 165       165/165
(100 %)
7 diff
(95.8 %id)
BF827899.
matches multiple genes
head_normal .a 790 to 985 218 to 19     Submitted on the opposite strand, also hits gene bA327L3.4, YBX1P1 200/218
(91 %)
0 diff
(100 %id)
BX405565 fetal liver, Liver .a 855 to 1521 676 to 10   fully sequenced,   667/676
(98 %)
0 diff
(100 %id)
BU737805.
matches multiple genes
eye, lens .a 870 to 1550 699 to 19   AAA also hits gene YBX1P1 681/681
(100 %)
0 diff
(100 %id)
CX867793 embryonic stem .a 875 to 1544 700 to 31       670/700
(95 %)
0 diff
(100 %id)
CA866173 Pancreas, Purified pancreatic islet .a 940 to 1547 608 to 1       608/608
(100 %)
0 diff
(100 %id)
CA843921 Pancreas, Purified pancreatic islet .a 940 to 1546 608 to 2       607/608
(99 %)
0 diff
(100 %id)
CX865873 embryonic stem .a 941 to 1544 629 to 26       604/629
(96 %)
0 diff
(100 %id)
AL043949 testis .a 1056 to 1507 453 to 1       453/453
(100 %)
2 diff
(99.6 %id)
BM968703 lung, Primary Lung Epithelial Cells .a 1160 to 1536 1 to 374   AAA Submitted on the opposite strand 374/376
(99 %)
9 diff
(97.7 %id)
BC013838 Brain, anaplastic oligodendroglioma with1p/19q loss .b 1 to 1517 1 to 1517 exact tiling clone, available from MGC, AAA   1517/1517
(100 %)
0 diff
(100 %id)
BM473872 eye, retinoblastoma .b 2 to 765 1 to 773       773/1054
(73 %)
28 diff
(97.4 %id)
BU175385 large cell carcinoma, lung .b 1510 to 2293 1 to 787   tiling clone,   787/868
(90 %)
8 diff
(99.1 %id)
DB454843 testis .c 1 to 476 2 to 477   tiling clone,   477/477
(100 %)
1 diff
(99.8 %id)
DB499284 hypothalamus .c 1 to 489 2 to 490       490/490
(100 %)
1 diff
(99.8 %id)
DB503037 hypothalamus .c 1 to 476 2 to 477       477/477
(100 %)
9 diff
(98.2 %id)
CD580575 brain .c 8 to 696 5 to 699       695/853
(81 %)
26 diff
(97.0 %id)
BF971939 leiomyosarcoma cell line, uterus .c 13 to 712 1 to 709       709/1119
(63 %)
27 diff
(97.6 %id)
BQ638721 eye, retina .c 14 to 616 1 to 603       603/603
(100 %)
0 diff
(100 %id)
CD580582 brain .c 16 to 703 1 to 689       689/830
(83 %)
37 diff
(95.6 %id)
CD580592 brain .c 24 to 789 69 to 839   tiling clone,   771/1052
(73 %)
37 diff
(96.5 %id)
BM550014 astrocytoma grade IV, cell line, brain .c 312 to 888 331 to 918       588/1126
(52 %)
28 diff
(97.6 %id)
BF793898 adrenal cortex carcinoma, cell line, adrenal gland .c 388 to 1179 1 to 794   tiling clone,   794/942
(84 %)
26 diff
(97.3 %id)
DB474893 hippocampus .d 1 to 499 2 to 500       500/500
(100 %)
0 diff
(100 %id)
CB961634 placenta, pre-eclamptic placenta .d 1 to 674 29 to 703 N201H N209K K211* tiling clone,   676/803
(84 %)
11 diff
(98.7 %id)
CD359170 testis .d 21 to 585 28 to 598       571/1105
(51 %)
23 diff
(98.0 %id)
BI087707 cervix .e 1 to 714 1 to 729   tiling clone,   728/730
(99 %)
30 diff
(95.9 %id)
BG748561 eye, normal pigmented retinal epithelium .e 125 to 902 1 to 787 V69P E70S G71K E72D K73E ... tiling clone,   787/787
(100 %)
18 diff
(97.8 %id)
BG749042 eye, normal pigmented retinal epithelium .e 125 to 895 1 to 774   tiling clone,   772/774
(99 %)
6 diff
(99.3 %id)
CN353693 embryonic stem cells, DMSO-treated H9 cellline .e 149 to 614 1 to 466       466/466
(100 %)
0 diff
(100 %id)
CR986080 T-Lymphocytes .e 150 to 851 1 to 702   tiling clone,   702/705
(99 %)
1 diff
(99.9 %id)
BU659869 blood .e 304 to 717 117 to 530       414/530
(78 %)
6 diff
(98.9 %id)
BX442305 brain, fetal brain .f 1 to 557 1 to 562 A2S A4X Q52X P53X P54X ...     562/975
(57 %)
11 diff
(98.9 %id)
CR988181 T-Lymphocytes .f 3 to 728 1 to 726 exact tiling clone,   726/730
(99 %)
1 diff
(99.9 %id)
DB454394 testis .g 1 to 469 2 to 471 exact tiling clone,   471/471
(100 %)
3 diff
(99.4 %id)
DB496315 hypothalamus .g 1 to 473 2 to 474 R58S     474/474
(100 %)
1 diff
(99.8 %id)
DB501607 hypothalamus .g 1 to 478 2 to 479 R51G R57G     479/479
(100 %)
4 diff
(99.2 %id)
DB501611 hypothalamus .g 1 to 480 2 to 481 R62H R69Q tiling clone,   481/481
(100 %)
3 diff
(99.4 %id)
DB501785 hypothalamus .g 1 to 477 2 to 478 P59H R69Q     478/478
(100 %)
2 diff
(99.6 %id)
DB502364 hypothalamus .g 1 to 472 2 to 473 R58S     473/473
(100 %)
1 diff
(99.8 %id)
AI933166 anaplastic oligodendroglioma, brain .g 63 to 485 436 to 16   AAA   421/421
(100 %)
18 diff
(95.8 %id)
AW603588 colon_normal .h 1 to 663 674 to 15 G71E E73T T74D tiling clone,   660/683
(96 %)
13 diff
(98.1 %id)
AW603600 colon_normal .h 71 to 663 603 to 9 R49P R50Q P53S R54S Q55P ... tiling clone,   595/608
(97 %)
16 diff
(97.4 %id)
GD136706   .h 105 to 444 340 to 1   tiling clone, Submitted on the opposite strand 340/341
(99 %)
3 diff
(99.2 %id)
AA551518 thyroid .i-u 1 to 439 8 to 448 exact tiling clone,   441/448
(98 %)
6 diff
(98.7 %id)
DA702660   .j 1 to 352 2 to 352 D68Y tiling clone, capped   351/351
(100 %)
1 diff
(99.8 %id)
AI815644.
matches multiple genes
brain, frontal lobe P1.a-u 18 to 750 1 to 743     also hits gene YBX1P1 743/743
(100 %)
18 diff
(97.6 %id)
DW466355.
matches multiple genes
Liver P1.a-u 589 to 920 17 to 348     also hits gene YBX1P1 332/352
(94 %)
3 diff
(99.2 %id)
BM700583.
matches multiple genes
eye, lens P1.a-u 630 to 1269 1 to 642     also hits gene YBX1P1 642/642
(100 %)
12 diff
(98.2 %id)
AA373279.
matches multiple genes
lung P1.a-u 667 to 915 1 to 246     also hits gene YBX1P1 246/246
(100 %)
7 diff
(97.2 %id)
BF827899.
matches multiple genes
head_normal P1.a-u 753 to 948 218 to 19     Submitted on the opposite strand, also hits gene bA327L3.4, YBX1P1 200/218
(91 %)
0 diff
(100 %id)
514 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI