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Gene HMGN5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
107 supporting clones for gene HMGN5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR157644 human embryonic stem cells differentiated toan early endodermal cell type .a 1 to 703 1 to 702   tiling clone,   702/702
(100 %)
2 diff
(99.8 %id)
BU165645 testis .a 8 to 588 1 to 581   tiling clone,   581/621
(93 %)
7 diff
(98.9 %id)
BQ435553 testis .a 21 to 804 1 to 796       796/796
(100 %)
28 diff
(96.5 %id)
BQ438410 testis .a 21 to 800 1 to 787       787/788
(99 %)
20 diff
(97.5 %id)
BQ438411 testis .a 21 to 803 1 to 796       796/796
(100 %)
19 diff
(97.7 %id)
BU852256 testis .a 21 to 774 1 to 768       768/831
(92 %)
29 diff
(96.6 %id)
AK315792 uterus .a 23 to 993 1 to 971 E134K     971/971
(100 %)
1 diff
(99.9 %id)
CN261394 embryonic stem cells, cell lines H1, H7, andH9 .a 45 to 852 8 to 814       807/814
(99 %)
7 diff
(99.2 %id)
BG612500 embryonal carcinoma, testis .a 47 to 899 1 to 884       667/885
(75 %)
21 diff
(97.7 %id)
BC005342 Bone marrow, acute myelogenous leukemia .a 56 to 1573 1 to 1518 exact tiling clone, available from MGC, AAA   1518/1518
(100 %)
2 diff
(99.9 %id)
AK094058 uterus .b -9 to 1676 1 to 1685 E132K D133M E134K E135K D136I ... tiling clone, available from FLJ,   1685/1685
(100 %)
4 diff
(99.8 %id)
AX748432   .b -9 to 1676 1 to 1685 E132K D133M E134K E135K D136I ...     1685/1685
(100 %)
4 diff
(99.8 %id)
NM_030763.2   .b -9 to 2116 1 to 2126 exact RefSeq,   2126/2126
(100 %)
0 diff
(100 %id)
DB257196 uterus .b -8 to 582 2 to 593   capped   592/592
(100 %)
3 diff
(99.5 %id)
DA745749   .b 23 to 591 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BF674532 Prostate .b 198 to 765 1 to 566       566/854
(66 %)
4 diff
(99.6 %id)
BG399698 Kidney .b 198 to 595 1 to 404       404/993
(40 %)
14 diff
(98.6 %id)
DB259943 uterus .b 199 to 788 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
BG612806 embryonal carcinoma, testis .b 216 to 595 1 to 385       383/889
(43 %)
11 diff
(98.8 %id)
BI850243 brain, primitive neuroectoderm .b 223 to 911 1 to 674       674/674
(100 %)
25 diff
(96.3 %id)
DW438883 Liver .b 228 to 452 17 to 241       225/244
(92 %)
10 diff
(96.0 %id)
BG531065 embryonal carcinoma, testis .b 230 to 745 1 to 517       517/517
(100 %)
7 diff
(98.7 %id)
BP370210 testis .b 231 to 788 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
CV333528 nervous_tumor .b 232 to 359 1 to 128       128/128
(100 %)
4 diff
(96.9 %id)
BG771393 adenocarcinoma, Prostate .b 232 to 778 1 to 553       553/702
(78 %)
7 diff
(99.1 %id)
BP371008 testis .b 232 to 790 1 to 559       559/559
(100 %)
5 diff
(99.2 %id)
BP192802 brain .b 238 to 818 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
BG777514 adenocarcinoma, Prostate .b 238 to 763 1 to 535       535/634
(84 %)
31 diff
(95.2 %id)
DB057292 testis .b 239 to 763 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
BP369740 testis .b 239 to 802 1 to 564       564/564
(100 %)
4 diff
(99.3 %id)
CR602524 Neuroblastoma Cot 25-normalized .b 245 to 1749 1 to 1505 exact     1505/1505
(100 %)
0 diff
(100 %id)
BX332208 Neuroblastoma Cot 25-normalized .b 245 to 1385 1 to 1130 N82X N125X N138X K161X N162X ...     1130/1130
(100 %)
8 diff
(99.3 %id)
BE748464 bone marrow, from acute myelogenous leukemia .b 250 to 788 1 to 544       544/645
(84 %)
16 diff
(97.6 %id)
AF250329   .b 252 to 2116 1 to 1865 exact tiling clone,   1865/1865
(100 %)
0 diff
(100 %id)
BY997560   .b 252 to 846 1 to 595       595/595
(100 %)
3 diff
(99.5 %id)
BF675288 Prostate .b 253 to 717 1 to 470       470/734
(64 %)
18 diff
(97.6 %id)
BQ440464 melanotic melanoma, skin .b 257 to 1097 1 to 846       846/854
(99 %)
10 diff
(98.9 %id)
BY997321   .b 263 to 879 21 to 637       617/637
(96 %)
6 diff
(99.1 %id)
BQ228526 embryonal carcinoma, cell line, testis .b 265 to 822 1 to 564       564/1263
(44 %)
20 diff
(98.5 %id)
BF812950 colon_ins .b 276 to 582 219 to 525       307/527
(58 %)
10 diff
(98.2 %id)
CN261395 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 280 to 842 99 to 663       565/663
(85 %)
8 diff
(98.8 %id)
AW269166 Kidney .b 285 to 448 164 to 1       164/164
(100 %)
0 diff
(100 %id)
BE546461 cervical carcinoma cell line, cervix .b 289 to 815 1 to 533       533/692
(77 %)
28 diff
(96.0 %id)
CV027393 mixed .b 320 to 911 1 to 592       592/592
(100 %)
0 diff
(100 %id)
TI_1948085343   .b 320 to 1167 127 to 976       850/1442
(58 %)
26 diff
(98.2 %id)
TI_1948085508   .b 320 to 1166 129 to 977       849/1455
(58 %)
28 diff
(98.1 %id)
TI_1948085587   .b 320 to 1155 128 to 964       837/1465
(57 %)
16 diff
(99.0 %id)
TI_1948085418   .b 333 to 1122 139 to 933       795/1560
(50 %)
31 diff
(98.1 %id)
BY994529   .b 403 to 1043 23 to 663       641/663
(96 %)
6 diff
(99.1 %id)
BM761606 lymph node, stomach .b 409 to 904 1 to 496       496/496
(100 %)
0 diff
(100 %id)
AW103336 brain, tumor, 5 pooled (see description) .b 422 to 687 266 to 1       266/266
(100 %)
2 diff
(99.3 %id)
BU630790 cell lines, Chondrosarcoma .b 422 to 1102 684 to 3   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 682/693
(98 %)
0 diff
(100 %id)
BQ429736 testis .b 473 to 1199 1 to 732       732/847
(86 %)
22 diff
(97.5 %id)
AW903265 nervous_normal .b 495 to 711 10 to 226       217/226
(96 %)
6 diff
(97.4 %id)
BU568511 testis .b 582 to 1196 1 to 629       629/923
(68 %)
19 diff
(98.0 %id)
BQ432883 testis .b 611 to 1403 1 to 795       795/795
(100 %)
9 diff
(98.9 %id)
AV707713 adrenal gland .b 699 to 1385 1 to 687       687/689
(99 %)
24 diff
(96.6 %id)
BQ350669 head_neck .b 767 to 1431 665 to 3       663/665
(99 %)
0 diff
(100 %id)
BQ232754 embryonal carcinoma, cell line, testis .b 787 to 1617 1 to 840       840/895
(93 %)
19 diff
(97.9 %id)
CD642349 Embryonic Stem cells .b 818 to 1627 55 to 860       806/867
(92 %)
20 diff
(97.7 %id)
TI_149301228   .b 849 to 1748 976 to 81   AAA   896/951
(94 %)
35 diff
(96.4 %id)
BG612536 embryonal carcinoma, testis .b 855 to 1493 1 to 645       645/645
(100 %)
21 diff
(96.8 %id)
BI335013 cervical carcinoma cell line, cervix .b 862 to 1646 13 to 800       788/800
(98 %)
6 diff
(99.3 %id)
BI333881 cervical carcinoma cell line, cervix .b 862 to 1597 11 to 756       746/758
(98 %)
31 diff
(96.0 %id)
N78553 multiple sclerosis lesions .b 890 to 1466 1 to 572       572/617
(92 %)
23 diff
(96.3 %id)
BE748753 bone marrow, from acute myelogenous leukemia .b 944 to 1677 735 to 1       735/875
(84 %)
16 diff
(98.2 %id)
BQ441233 testis .b 945 to 1604 1 to 671       671/709
(94 %)
16 diff
(97.8 %id)
BP418227 small intestine .b 1032 to 1536 1 to 505     Submitted on the opposite strand 505/505
(100 %)
0 diff
(100 %id)
AV657478 corresponding non cancerous liver tissue .b 1040 to 1391 1 to 352     Submitted on the opposite strand 352/354
(99 %)
4 diff
(98.9 %id)
AV657685 corresponding non cancerous liver tissue .b 1040 to 1391 1 to 352     Submitted on the opposite strand 352/353
(99 %)
4 diff
(98.9 %id)
BX329530 Neuroblastoma Cot 25-normalized .b 1041 to 1704 664 to 1       664/801
(82 %)
34 diff
(95.8 %id)
AW023711 cochlea, ear .b 1060 to 1457 1 to 399       399/399
(100 %)
6 diff
(98.5 %id)
BX280399 melanotic melanoma, skin .b 1079 to 1571 1 to 493       493/493
(100 %)
0 diff
(100 %id)
CR749104 melanotic melanoma, skin .b 1079 to 1566 24 to 511       488/511
(95 %)
6 diff
(98.9 %id)
BM471235 melanotic melanoma, skin .b 1079 to 1748 13 to 682   AAA   670/682
(98 %)
6 diff
(99.2 %id)
BM977068 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1115 to 1748 652 to 19   AAA   634/634
(100 %)
0 diff
(100 %id)
CA867236 Pancreas, Purified pancreatic islet .b 1156 to 1749 594 to 1       594/594
(100 %)
2 diff
(99.7 %id)
DB351475 uterus .b 1162 to 1676 517 to 1       517/517
(100 %)
2 diff
(99.7 %id)
BX348667 Neuroblastoma Cot 25-normalized .b 1170 to 1749 1 to 579       579/579
(100 %)
3 diff
(99.5 %id)
FN048740 breast carcinoma .b 1183 to 1236 54 to 1     Submitted on the opposite strand 54/55
(98 %)
0 diff
(100 %id)
BE546757 cervical carcinoma cell line, cervix .b 1334 to 1749 53 to 458       406/466
(87 %)
12 diff
(97.5 %id)
AA669885 bone marrow stroma .b 1338 to 1749 412 to 1       412/412
(100 %)
2 diff
(99.6 %id)
CK903052 Pancreas, Purified pancreatic islet .b 1393 to 1748 372 to 17   AAA Submitted on the opposite strand 356/356
(100 %)
1 diff
(99.8 %id)
FN118235 breast carcinoma .b 1414 to 1486 1 to 73       73/74
(98 %)
1 diff
(98.7 %id)
BF792494 adrenal cortex carcinoma, cell line, adrenal gland .b 1476 to 1745 1 to 270   AAA   270/270
(100 %)
0 diff
(100 %id)
GD142713   .b 1566 to 1745 1 to 181   AAA   181/181
(100 %)
4 diff
(97.8 %id)
GD142760   .b 1566 to 1745 1 to 179   AAA   179/179
(100 %)
6 diff
(96.7 %id)
GD142774   .b 1566 to 1746 1 to 181       181/193
(93 %)
8 diff
(95.9 %id)
BG271566 normal head/neck tissue .b 1566 to 1742 184 to 8       177/209
(84 %)
0 diff
(100 %id)
N73707 multiple sclerosis lesions .b 1826 to 2116 297 to 1       297/306
(97 %)
12 diff
(96.1 %id)
BM988246 mixed .c 1 to 313 23 to 335   tiling clone, Submitted on the opposite strand 317/317
(100 %)
0 diff
(100 %id)
CA942534 Pancreas, Purified pancreatic islet .c 91 to 726 18 to 653 exact tiling clone,   636/653
(97 %)
6 diff
(99.1 %id)
CK903051 Pancreas, Purified pancreatic islet .c 126 to 666 1 to 541     Submitted on the opposite strand 541/541
(100 %)
3 diff
(99.5 %id)
BG541827 lung .d 1 to 817 3 to 811 P29Q V30L T31H P32Q E33R ... tiling clone,   811/841
(96 %)
25 diff
(97.1 %id)
DA154284 amygdala .e 1 to 582 2 to 584   tiling clone, capped   583/583
(100 %)
5 diff
(99.2 %id)
DA753432   .e 21 to 587 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BQ224743 embryonal carcinoma, cell line, testis .e 47 to 752 1 to 713 K37T E65W T66K K67P Q68R ... tiling clone,   713/896
(79 %)
14 diff
(98.5 %id)
BI784484   .f-u 1 to 636 18 to 652 F35L A37L W39G L40F L41F ... tiling clone,   635/657
(96 %)
11 diff
(98.4 %id)
DB063563 testis .f-u 65 to 604 2 to 539 exact tiling clone, capped   538/538
(100 %)
1 diff
(99.9 %id)
CN412556 embryonic stem cells, cell lines H1, H7, andH9 .f-u 113 to 297 1 to 184       184/184
(100 %)
1 diff
(99.5 %id)
BP195298 brain .g 1 to 581 1 to 581 Q36* tiling clone,   581/581
(100 %)
5 diff
(99.2 %id)
DA256124 caudate nucleus .h 1 to 563 2 to 564 exact tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
BU603832 mixed (pool of 40 RNAs) .h 423 to 561 1 to 139   AAA   139/139
(100 %)
4 diff
(97.2 %id)
EC521696 Prostate .h 438 to 532 1 to 93       93/93
(100 %)
2 diff
(97.9 %id)
CB160129 Liver .i 1 to 554 1 to 554 exact tiling clone,   554/554
(100 %)
3 diff
(99.5 %id)
BQ432332 melanotic melanoma, skin .j 1 to 537 1 to 537 exact tiling clone, AAA   537/537
(100 %)
0 diff
(100 %id)
BF102901 adenocarcinoma, Prostate Gene HMGN5, variant not shown         Suspected internal deletion, this clone was ignored    
BF103442 adenocarcinoma, Prostate Gene HMGN5, variant not shown         Suspected internal deletion, this clone was ignored    
BF215365 bone marrow, from acute myelogenous leukemia Gene HMGN5, variant not shown         Suspected internal deletion, this clone was ignored    
BG778002 adenocarcinoma, Prostate Gene HMGN5, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C