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Gene NRTNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
35 supporting clones for gene NRTN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ064508 lymph, lymphoma, cell line .a 1 to 338 20 to 358   tiling clone,   339/1450
(23 %)
4 diff
(99.8 %id)
BU156968 hepatocellular carcinoma, cell line, Liver .a 7 to 744 1 to 746   tiling clone,   746/1166
(63 %)
40 diff
(96.6 %id)
BQ648242 hepatocellular carcinoma, cell line, Liver .a 7 to 340 1 to 335       335/1324
(25 %)
9 diff
(99.4 %id)
BQ648291 hepatocellular carcinoma, cell line, Liver .a 7 to 342 1 to 337   tiling clone,   337/1287
(26 %)
2 diff
(99.9 %id)
BQ652155 hepatocellular carcinoma, cell line, Liver .a 7 to 323 1 to 318       318/1071
(29 %)
11 diff
(99.0 %id)
BQ646146 hepatocellular carcinoma, cell line, Liver .a 7 to 339 1 to 335       335/1162
(28 %)
6 diff
(99.5 %id)
TI_154089654   .a 378 to 943 72 to 639     Submitted on the opposite strand 568/1126
(50 %)
26 diff
(97.7 %id)
BQ777668 Pancreas, Purified pancreatic islet .a 415 to 991 1 to 577     Submitted on the opposite strand 577/577
(100 %)
0 diff
(100 %id)
AL161995 melanoma (MeWo cell line) .a 420 to 1522 1 to 1103 exact tiling clone, available from DKFZ, AAA   1103/1103
(100 %)
0 diff
(100 %id)
NM_004558.3   .a 420 to 1522 1 to 1103 exact RefSeq, AAA   1103/1103
(100 %)
0 diff
(100 %id)
BM702521 eye, human retina .a 537 to 978 1 to 441   fully sequenced,   441/441
(100 %)
1 diff
(99.8 %id)
BX281647 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 581 to 1035 1 to 455       455/456
(99 %)
3 diff
(99.4 %id)
CD674761 eye, lens .a 625 to 1044 1 to 420       420/420
(100 %)
0 diff
(100 %id)
TI_1968230975   .a 652 to 1350 36 to 733       698/760
(91 %)
25 diff
(96.8 %id)
TI_1968232513   .a 652 to 1070 184 to 602     Submitted on the opposite strand 419/602
(69 %)
9 diff
(98.6 %id)
TI_1968232561   .a 652 to 1461 234 to 1044     Submitted on the opposite strand 811/1280
(63 %)
44 diff
(96.6 %id)
BC137399 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 667 to 1461 1 to 795       795/795
(100 %)
0 diff
(100 %id)
BC137400 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 667 to 1461 1 to 795       795/795
(100 %)
0 diff
(100 %id)
BM726983 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 684 to 1282 1 to 600       600/600
(100 %)
6 diff
(99.0 %id)
BM709473 eye, optic nerve .a 687 to 898 1 to 212   fully sequenced,   212/212
(100 %)
0 diff
(100 %id)
BM725812 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 691 to 898 1 to 208   fully sequenced,   208/208
(100 %)
0 diff
(100 %id)
BM728052 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 706 to 1077 1 to 372       372/372
(100 %)
2 diff
(99.5 %id)
TI_151731660   .a 737 to 1522 873 to 87   AAA   787/966
(81 %)
26 diff
(97.4 %id)
BM696192 eye, human retina .a 740 to 1047 1 to 308       308/308
(100 %)
0 diff
(100 %id)
BQ189286 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 740 to 1493 1 to 750       750/753
(99 %)
10 diff
(98.7 %id)
U78110   .a 779 to 1372 1 to 594       594/594
(100 %)
0 diff
(100 %id)
BU733441 eye, optic nerve .a 868 to 1522 673 to 19   fully sequenced, AAA   655/655
(100 %)
1 diff
(99.9 %id)
BM677930 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 868 to 1522 673 to 19   fully sequenced, AAA   655/655
(100 %)
0 diff
(100 %id)
BM665236 eye, human retina .a 917 to 1522 624 to 19   fully sequenced, AAA   606/606
(100 %)
0 diff
(100 %id)
TI_151728095   .a 958 to 1522 650 to 81   AAA   570/748
(76 %)
28 diff
(96.3 %id)
TI_1968235279   .a 964 to 1461 1 to 497       497/1305
(38 %)
5 diff
(99.7 %id)
AW050617 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1016 to 1523 507 to 2   tiling clone,   506/518
(97 %)
0 diff
(100 %id)
TI_1968231001   .a 1050 to 1461 480 to 70       411/480
(85 %)
0 diff
(100 %id)
TI_1968235609   .a 1150 to 1461 11 to 322       312/1311
(23 %)
3 diff
(99.8 %id)
BM680617 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1178 to 1522 364 to 19   AAA   346/346
(100 %)
2 diff
(99.5 %id)
AW249852 lung, small cell carcinoma .a 1266 to 1522 267 to 11   AAA   257/257
(100 %)
4 diff
(98.5 %id)
BF306373 muscle, rhabdomyosarcoma .a 1280 to 1522 1 to 242   AAA   242/242
(100 %)
2 diff
(99.2 %id)
BC127182 PCR rescued clones Gene NRTN, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BC127183 PCR rescued clones Gene NRTN, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DI