To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene NKRFTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
122 supporting clones for gene NKRF back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI554152 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1 to 669 26 to 702   tiling clone,   677/702
(96 %)
23 diff
(96.8 %id)
TI_44385150   .a 1 to 669 110 to 786       677/702
(96 %)
23 diff
(96.8 %id)
AY208891   .a 13 to 3259 1 to 3247       3247/3247
(100 %)
0 diff
(100 %id)
BI544578 brain, hippocampus .a 13 to 708 1 to 701       701/740
(94 %)
17 diff
(97.8 %id)
NM_017544.3   .a 13 to 3275 1 to 3263   RefSeq,   3263/3263
(100 %)
6 diff
(99.9 %id)
TI_44000748   .a 18 to 708 84 to 779       696/818
(85 %)
11 diff
(98.7 %id)
BG705887 brain, hypothalamus .a 30 to 817 1 to 791       791/791
(100 %)
14 diff
(98.3 %id)
BI599571 brain, hypothalamus .a 30 to 602 1 to 572       572/572
(100 %)
5 diff
(99.2 %id)
BC040379 Skin, normal .a 31 to 2629 1 to 2599   available from MGC, AAA   2599/2599
(100 %)
1 diff
(100.0 %id)
BG741433 skin .a 31 to 928 1 to 913       913/913
(100 %)
31 diff
(96.7 %id)
BC068514 Brain, hypothalamus .a 35 to 2743 1 to 2709   available from MGC, AAA   2709/2709
(100 %)
2 diff
(100.0 %id)
TI_45212997   .a 35 to 602 88 to 654       567/654
(86 %)
7 diff
(99.0 %id)
BC047878 Pancreas, Spleen, adult pooled .a 46 to 3262 1 to 3217   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3217/3217
(100 %)
0 diff
(100 %id)
BI836552 pooled pancreas and spleen .a 46 to 929 1 to 889       889/889
(100 %)
17 diff
(98.1 %id)
TI_57167562   .a 46 to 929 33 to 921       889/921
(96 %)
23 diff
(97.6 %id)
NM_001173487.1   .b 1 to 3361 1 to 3361 exact RefSeq,   3361/3361
(100 %)
6 diff
(99.9 %id)
AL539002 brain, fetal brain .b 72 to 1176 1 to 1093   tiling clone,   1093/1101
(99 %)
23 diff
(98.0 %id)
BP248205 Kidney .b 418 to 997 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BE539107 cervix .b 418 to 1061 48 to 705       658/897
(73 %)
15 diff
(98.4 %id)
EF165092   .b 541 to 3348 1 to 2808   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2808/2808
(100 %)
0 diff
(100 %id)
BP312287 brain .b 639 to 1219 1 to 580       580/582
(99 %)
5 diff
(99.2 %id)
GD147964   .b 660 to 962 1 to 302   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 302/308
(98 %)
7 diff
(97.8 %id)
BP354977   .b 665 to 1253 1 to 587       587/587
(100 %)
6 diff
(99.0 %id)
BP355997   .b 810 to 1394 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
AL544127 placenta, Placenta Cot 25-normalized .b 885 to 1894 1 to 1000       1000/1055
(94 %)
17 diff
(98.4 %id)
AL544128 placenta, Placenta Cot 25-normalized .b 885 to 1990 1 to 1098       1098/1105
(99 %)
11 diff
(99.1 %id)
EF165094   .b 896 to 1240 1 to 345       345/345
(100 %)
0 diff
(100 %id)
CA489492   .b 927 to 1805 1 to 883       883/888
(99 %)
9 diff
(99.0 %id)
CR591991 HeLa cells Cot 25-normalized .b 932 to 1920 1 to 989       989/989
(100 %)
0 diff
(100 %id)
AL556786 placenta .b 932 to 1859 1 to 915       915/993
(92 %)
45 diff
(95.5 %id)
AW875144 pnet .b 937 to 1540 630 to 28       603/630
(95 %)
0 diff
(100 %id)
CX865397 embryonic stem .b 991 to 1791 18 to 818       801/818
(97 %)
6 diff
(99.3 %id)
BX391947   .b 1001 to 1920 919 to 1       919/919
(100 %)
5 diff
(99.5 %id)
BG031804 breast, mammary adenocarcinoma, cell line .b 1056 to 1809 1 to 744       744/925
(80 %)
15 diff
(98.4 %id)
EF165095   .b 1156 to 2407 1 to 1242   AAA   1242/1242
(100 %)
16 diff
(98.8 %id)
CD579799 brain .b 1160 to 1820 1 to 665       665/666
(99 %)
10 diff
(98.5 %id)
BF724986 eye, Iris .b 1208 to 1688 1 to 481       481/481
(100 %)
0 diff
(100 %id)
DR759924 embryonic stem .b 1246 to 2015 1 to 769       769/769
(100 %)
6 diff
(99.3 %id)
BF971711 leiomyosarcoma cell line, uterus .b 1356 to 2064 1 to 710       710/900
(78 %)
10 diff
(98.9 %id)
BM541424 leiomyosarcoma, uterus .b 1437 to 2458 1 to 1026       1026/1085
(94 %)
28 diff
(97.5 %id)
BF035287 adenocarcinoma, ovary .b 1566 to 2298 1 to 728       728/835
(87 %)
17 diff
(98.0 %id)
BM450305 eye, retinoblastoma .b 1588 to 2537 1 to 958       958/1031
(92 %)
17 diff
(98.4 %id)
Y07707 brain .b 1624 to 3348 1 to 1725       1725/1725
(100 %)
2 diff
(99.9 %id)
Z44755 brain, total brain .b 1625 to 1944 1 to 320       320/320
(100 %)
0 diff
(100 %id)
BQ021613 lung, Metastatic Chondrosarcoma .b 1636 to 2421 796 to 19   AAA   778/778
(100 %)
10 diff
(98.8 %id)
BE893375 melanotic melanoma, skin .b 1647 to 2354 1 to 707       707/963
(73 %)
61 diff
(93.7 %id)
CB132438 Liver .b 1657 to 2165 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BI752335 brain .b 1663 to 2344 1 to 684       684/684
(100 %)
11 diff
(98.4 %id)
TI_57219338   .b 1663 to 2344 36 to 719       684/719
(95 %)
7 diff
(99.1 %id)
AA146602 colon, tumor .b 1686 to 2080 1 to 399       399/401
(99 %)
5 diff
(98.8 %id)
BX484566   .b 1702 to 2299 598 to 1     Submitted on the opposite strand 598/598
(100 %)
2 diff
(99.7 %id)
BM907133 brain, hippocampus .b 1733 to 2544 1 to 818       818/1055
(77 %)
15 diff
(98.6 %id)
BE779655 eye, retinoblastoma .b 1749 to 2385 1 to 649       649/833
(77 %)
15 diff
(98.2 %id)
BQ683312 melanotic melanoma, cell line, skin .b 1763 to 2638 1 to 876       876/962
(91 %)
23 diff
(97.7 %id)
CA454178   .b 1790 to 2675 1 to 893       893/893
(100 %)
17 diff
(98.1 %id)
BU629966 cell lines, Chondrosarcoma .b 1799 to 2407 627 to 19   AAA   609/609
(100 %)
0 diff
(100 %id)
BF038230 adenocarcinoma, ovary .b 1811 to 2505 1 to 701       701/883
(79 %)
20 diff
(97.8 %id)
AL578959 placenta .b 1836 to 2363 549 to 8       542/1057
(51 %)
0 diff
(100 %id)
BX335363 Placenta Cot 25-normalized .b 1861 to 2943 1 to 1089       1089/1089
(100 %)
28 diff
(97.5 %id)
BX343706 Placenta Cot 25-normalized .b 1861 to 2921 1 to 1045       1045/1060
(98 %)
16 diff
(98.5 %id)
BX403357 Placenta Cot 25-normalized .b 1862 to 2396 1 to 533       533/706
(75 %)
26 diff
(96.4 %id)
BM690942 eye, RPE and Choroid .b 1863 to 2297 9 to 443       435/443
(98 %)
6 diff
(98.7 %id)
F12135 brain, total brain .b 1927 to 2247 1 to 320       320/320
(100 %)
2 diff
(99.4 %id)
T66250 whole brain .b 1954 to 2416 1 to 473       473/475
(99 %)
12 diff
(97.5 %id)
CA314884 Human Lung Epithelial cells, lung .b 1986 to 2715 746 to 17   AAA   730/730
(100 %)
0 diff
(100 %id)
AA032145 uterus .b 2060 to 2332 1 to 279       279/280
(99 %)
7 diff
(97.5 %id)
R20484 whole brain .b 2064 to 2359 1 to 300       300/433
(69 %)
5 diff
(98.9 %id)
BX280197 cervix .b 2065 to 2548 1 to 484       484/484
(100 %)
0 diff
(100 %id)
BI093603 cervix .b 2065 to 2901 1 to 838       838/838
(100 %)
14 diff
(98.4 %id)
AW664987 pooled .b 2104 to 2712 619 to 11       609/619
(98 %)
0 diff
(100 %id)
AA774230 lung, lung carcinoma .b 2128 to 2406 280 to 2       279/280
(99 %)
0 diff
(100 %id)
AI826966 adenocarcinoma, Pancreas .b 2185 to 2716 534 to 3       532/534
(99 %)
0 diff
(100 %id)
AI935796 Kidney .b 2191 to 2812 622 to 1       622/622
(100 %)
3 diff
(99.6 %id)
AV729182 hypothalamus .b 2195 to 2694 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BU753393 placenta .b 2203 to 2825 640 to 18   AAA   623/623
(100 %)
3 diff
(99.6 %id)
TI_154000408   .b 2240 to 2713 619 to 146   AAA   474/474
(100 %)
0 diff
(100 %id)
AL570348 placenta, Placenta Cot 25-normalized .b 2244 to 3272 1048 to 34   AAA   1015/1071
(94 %)
0 diff
(100 %id)
AL567613 brain, fetal brain .b 2253 to 3322 1064 to 4       1061/1100
(96 %)
0 diff
(100 %id)
AL570345 placenta, Placenta Cot 25-normalized .b 2264 to 3315 1043 to 1       1043/1086
(96 %)
25 diff
(97.7 %id)
BU941006 mixed (pool of 40 RNAs) .b 2302 to 2930 1 to 635       635/887
(71 %)
25 diff
(97.2 %id)
BI000305 head_normal .b 2303 to 2823 15 to 530       516/530
(97 %)
6 diff
(98.9 %id)
BU726405 eye, RPE and Choroid .b 2317 to 2812 513 to 18   AAA   496/496
(100 %)
0 diff
(100 %id)
C01344   .b 2341 to 2407 1 to 68       68/68
(100 %)
1 diff
(98.6 %id)
EC518662 Prostate .b 2471 to 2567 1 to 97       97/97
(100 %)
0 diff
(100 %id)
BG288123 bladder, transitional cell papilloma, cell line .b 2481 to 3232 1 to 749       749/752
(99 %)
8 diff
(99.0 %id)
BP430257   .b 2512 to 2817 1 to 306       306/306
(100 %)
4 diff
(98.7 %id)
T67176 liver and spleen .b 2521 to 2811 1 to 294       294/294
(100 %)
3 diff
(99.0 %id)
AA203239 liver and spleen .b 2521 to 3161 1 to 636       636/874
(72 %)
21 diff
(97.6 %id)
AI824139 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 2535 to 2813 279 to 1       279/279
(100 %)
0 diff
(100 %id)
BG571936 placenta .b 2588 to 3302 1 to 715       715/715
(100 %)
9 diff
(98.8 %id)
TI_149273553   .b 2612 to 3285 759 to 86   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 674/996
(67 %)
1 diff
(99.9 %id)
BU675893 lung, Primary Lung Epithelial Cells .b 2639 to 3285 665 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 647/647
(100 %)
0 diff
(100 %id)
TI_149277279   .b 2644 to 3348 793 to 89   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 705/706
(99 %)
5 diff
(99.3 %id)
BI496983 cochlea, ear .b 2652 to 2842 8 to 198       191/205
(93 %)
7 diff
(96.6 %id)
BQ014139 Chondrosarcoma, Left Pubic Bone .b 2654 to 3351 716 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 698/708
(98 %)
0 diff
(100 %id)
BM968041 lung, Primary Lung Epithelial Cells .b 2715 to 3348 652 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 634/634
(100 %)
1 diff
(99.9 %id)
FN137142 breast carcinoma .b 2718 to 2820 1 to 101       101/102
(99 %)
3 diff
(97.1 %id)
R45307 whole brain .b 2762 to 3293 535 to 1       535/547
(97 %)
24 diff
(95.7 %id)
BE503422 pooled germ cell tumors .b 2773 to 3285 513 to 1       513/513
(100 %)
0 diff
(100 %id)
BU622847 cell lines, Enchondroma .b 2775 to 3348 592 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 574/583
(98 %)
2 diff
(99.7 %id)
BQ003795 Chondrosarcoma, Left Pelvis .b 2780 to 3353 590 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 574/574
(100 %)
0 diff
(100 %id)
BX389498 Placenta Cot 25-normalized .b 2786 to 3355 1 to 566   tiling clone,   566/566
(100 %)
5 diff
(99.2 %id)
AW469577 pooled .b 2799 to 3286 488 to 1       488/488
(100 %)
3 diff
(99.4 %id)
AI813863 adenocarcinoma, Pancreas .b 2807 to 3294 488 to 1       488/488
(100 %)
1 diff
(99.8 %id)
AA845622 parathyroid gland, parathyroid tumor .b 2861 to 3355 501 to 7       495/501
(98 %)
0 diff
(100 %id)
AI419961 pooled .b 2879 to 3354 476 to 1       476/476
(100 %)
0 diff
(100 %id)
AW474333 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 2879 to 3355 480 to 3       478/480
(99 %)
0 diff
(100 %id)
AA176691   .b 2886 to 3354 467 to 1       467/522
(89 %)
5 diff
(99.1 %id)
H90559 liver and spleen .b 2897 to 3262 371 to 1       371/372
(99 %)
7 diff
(98.2 %id)
AA281300 germinal center B cell .b 2919 to 3353 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AA146603 colon, tumor .b 2936 to 3355 422 to 2       421/423
(99 %)
0 diff
(100 %id)
FN119904 breast carcinoma .b 2937 to 3035 100 to 1     Submitted on the opposite strand 100/104
(96 %)
2 diff
(98.1 %id)
D80064 brain .b 2938 to 3280 348 to 6       343/516
(66 %)
0 diff
(100 %id)
FN076324 breast carcinoma .b 2943 to 3045 104 to 1     Submitted on the opposite strand 104/105
(99 %)
1 diff
(99.1 %id)
CB117211 Liver .b 2946 to 3348 1 to 403   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 403/403
(100 %)
0 diff
(100 %id)
T66168 whole brain .b 2948 to 3341 415 to 21   AAA   395/411
(96 %)
0 diff
(100 %id)
AI089618 uterus .b 2963 to 3347 385 to 1       385/385
(100 %)
0 diff
(100 %id)
T67175 liver and spleen .b 2979 to 3355 394 to 16       379/394
(96 %)
0 diff
(100 %id)
F11032 brain, total brain .b 3062 to 3348 288 to 1       288/288
(100 %)
1 diff
(99.7 %id)
F03739 brain, total brain .b 3074 to 3348 275 to 1       275/275
(100 %)
0 diff
(100 %id)
F35055 pectoral muscle (after mastectomy) .b 3121 to 3288 1 to 168       168/168
(100 %)
0 diff
(100 %id)
ES316131 pool of melanoma cell lines .c 1 to 447 27 to 473   tiling clone,   447/473
(94 %)
6 diff
(98.8 %id)
AJ011812 cervix .c 66 to 3798 1 to 3718 R71G C378S R379S V380S F381V ... AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3718/3718
(100 %)
21 diff
(99.5 %id)
EF158333   .c 66 to 1053 1 to 988       988/988
(100 %)
2 diff
(99.8 %id)
EF216688   .c 66 to 2858 1 to 2793 R71G AAA   2793/2793
(100 %)
1 diff
(100.0 %id)
EF216689   .c 66 to 3799 1 to 3732 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3732/3732
(100 %)
1 diff
(100.0 %id)
NM_001173488.1   .c 66 to 3812 1 to 3747 exact RefSeq,   3747/3747
(100 %)
6 diff
(99.9 %id)
EF165093 placenta .c 176 to 1201 1 to 1026       1026/1026
(100 %)
1 diff
(100.0 %id)
DR002872 fetal brain .c 209 to 955 9 to 756       748/756
(98 %)
6 diff
(99.3 %id)
EF165091   .c 247 to 1015 1 to 769       769/769
(100 %)
1 diff
(99.9 %id)
EF165090   .c 326 to 995 1 to 670       670/670
(100 %)
1 diff
(99.9 %id)
AI400966 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene NKRF, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI