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Gene NR6A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
121 supporting clones for gene NR6A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_033334.2   .a 1 to 1902 1 to 1902 exact RefSeq, AAA   1902/1902
(100 %)
0 diff
(100 %id)
X99975 testis .a 12 to 4199 56 to 4242 A129T tiling clone,   4187/4243
(98 %)
13 diff
(99.7 %id)
U80802 testis .a 22 to 1899 1 to 1878 exact AAA   1878/1878
(100 %)
0 diff
(100 %id)
U64876 testis .a 104 to 1766 125 to 1788 N90K     1664/1791
(92 %)
12 diff
(99.4 %id)
CD630774   .a 121 to 839 1 to 724       724/724
(100 %)
7 diff
(99.1 %id)
AF004291   .a 333 to 1911 263 to 1841   tiling clone,   1579/1842
(85 %)
5 diff
(99.8 %id)
BX390656   .a 853 to 1771 1 to 912       912/912
(100 %)
16 diff
(98.3 %id)
BQ278164 ovary, teratocarcinoma, cell line .a 1280 to 2079 1 to 806       806/1073
(75 %)
6 diff
(99.5 %id)
BU553662 ovary, teratocarcinoma, cell line .a 1280 to 1896 1 to 633       633/842
(75 %)
30 diff
(96.5 %id)
BQ775067 Bone, Human Chondrosarcoma Cell Line .a 1303 to 1752 465 to 16   AAA   450/450
(100 %)
1 diff
(99.8 %id)
BX113756   .a 1484 to 1896 1 to 413   AAA   413/413
(100 %)
2 diff
(99.6 %id)
AI028611   .a 1517 to 1898 385 to 4       382/385
(99 %)
0 diff
(100 %id)
AI476409 pooled .a 1518 to 1898 384 to 4       381/384
(99 %)
0 diff
(100 %id)
BI094028 cervix .a 1984 to 2743 1 to 764   tiling clone,   764/775
(98 %)
26 diff
(96.7 %id)
BQ368213 placenta_normal .a 2313 to 2649 1 to 336       336/336
(100 %)
1 diff
(99.8 %id)
BU846219 ovary, teratocarcinoma, cell line .a 2316 to 3267 37 to 994       958/994
(96 %)
6 diff
(99.4 %id)
BQ278173 ovary, teratocarcinoma, cell line .a 2317 to 3252 1 to 949       949/1058
(89 %)
24 diff
(97.8 %id)
BU849660 ovary, teratocarcinoma, cell line .a 2317 to 3131 1 to 826       826/857
(96 %)
12 diff
(98.6 %id)
BU859477 ovary, teratocarcinoma, cell line .a 2318 to 3111 1 to 808       808/945
(85 %)
42 diff
(95.6 %id)
TI_149312006   .a 2743 to 3516 855 to 88   AAA   768/946
(81 %)
5 diff
(99.5 %id)
BX485266   .a 2771 to 3329 1 to 560       560/560
(100 %)
6 diff
(99.0 %id)
BM977734 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2821 to 3516 714 to 19   AAA   696/696
(100 %)
1 diff
(99.9 %id)
AA330672 embryo .a 3221 to 3603 1 to 383       383/383
(100 %)
10 diff
(97.4 %id)
AW950466   .a 3222 to 3901 1 to 685       685/702
(97 %)
12 diff
(98.3 %id)
AW950468   .a 3222 to 3654 1 to 432       432/432
(100 %)
7 diff
(98.4 %id)
AI075907   .a 3300 to 3784 488 to 4       485/488
(99 %)
0 diff
(100 %id)
BX509410   .a 3306 to 3800 1 to 495       495/495
(100 %)
0 diff
(100 %id)
AU124060   .a 3601 to 4237 2 to 638   tiling clone, capped   637/637
(100 %)
5 diff
(99.3 %id)
BF375991 testis_normal .a 3653 to 3977 326 to 5       322/340
(94 %)
0 diff
(100 %id)
BG720552 testis .a 3981 to 4440 1 to 456   tiling clone,   456/482
(94 %)
14 diff
(97.1 %id)
DR158283 human embryonic stem cells differentiated toan early endodermal cell type .a 4400 to 4981 7 to 588       582/588
(98 %)
6 diff
(99.0 %id)
DA734640   .a 4401 to 4926 2 to 527   tiling clone, capped   526/526
(100 %)
3 diff
(99.5 %id)
BC027988 Placenta, choriocarcinoma .a 4508 to 6354 11 to 1857   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1847/1847
(100 %)
2 diff
(99.9 %id)
BI087700 cervix .a 4509 to 5223 1 to 713   available from MGC,   713/714
(99 %)
7 diff
(99.1 %id)
BM012149 brain, neuroblastoma, cell line .a 4587 to 5420 902 to 76     Submitted on the opposite strand 827/902
(91 %)
0 diff
(100 %id)
TI_59381350   .a 4587 to 5420 1001 to 175     Submitted on the opposite strand 827/901
(91 %)
0 diff
(100 %id)
BE407934 choriocarcinoma, placenta .a 4813 to 5420 662 to 56     Submitted on the opposite strand 607/797
(76 %)
0 diff
(100 %id)
BF902181 marrow .a 4853 to 5360 508 to 1     Submitted on the opposite strand 508/508
(100 %)
12 diff
(97.7 %id)
AW972270   .a 4886 to 5553 669 to 1     Submitted on the opposite strand 669/669
(100 %)
12 diff
(98.3 %id)
DB187773 liver, tumor tissue .a 4892 to 5463 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
AA176388   .a 4964 to 5395 1 to 439       439/439
(100 %)
10 diff
(97.8 %id)
AW972267   .a 5008 to 5553 546 to 1     Submitted on the opposite strand 546/547
(99 %)
9 diff
(98.4 %id)
CX759937 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 5062 to 5833 1 to 772     Submitted on the opposite strand 772/807
(95 %)
18 diff
(97.8 %id)
AW732909 choriocarcinoma, placenta .a 5065 to 5554 520 to 31   AAA Submitted on the opposite strand 490/490
(100 %)
0 diff
(100 %id)
BX116009   .a 5094 to 5555 1 to 462       462/462
(100 %)
0 diff
(100 %id)
CV802455 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 5099 to 5825 1 to 719       719/843
(85 %)
14 diff
(98.4 %id)
AI337208 pooled germ cell tumors .a 5104 to 5554 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AA991937 pooled germ cell tumors .a 5114 to 5554 441 to 1       441/441
(100 %)
0 diff
(100 %id)
BE018500 cervix .a 5118 to 5561 445 to 1     Submitted on the opposite strand 445/445
(100 %)
1 diff
(99.8 %id)
AI191939   .a 5125 to 5556 432 to 1       432/432
(100 %)
0 diff
(100 %id)
AI972860 Prostate .a 5125 to 5548 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
AW305372 brain, three pooled meningiomas .a 5137 to 5572 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
CR748619 pooled .a 5159 to 5554 1 to 396   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
CX785726 human embryonic stem cells .a 5160 to 5927 1 to 768       768/768
(100 %)
0 diff
(100 %id)
AW002379 pooled germ cell tumors .a 5186 to 5554 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
AI807046 pooled .a 5198 to 5558 361 to 1       361/361
(100 %)
6 diff
(98.4 %id)
AW135235   .a 5274 to 5571 1 to 297     Submitted on the opposite strand 297/305
(97 %)
4 diff
(98.7 %id)
AA991979 pooled germ cell tumors .a 5280 to 5554 275 to 1       275/275
(100 %)
1 diff
(99.7 %id)
BF224098 carcinoid, lung .a 5281 to 5529 1 to 249     Submitted on the opposite strand 249/249
(100 %)
0 diff
(100 %id)
AA563667 colon .a 5286 to 5555 270 to 1       270/270
(100 %)
0 diff
(100 %id)
AI693165 carcinoid, lung .a 5287 to 5530 1 to 244     Submitted on the opposite strand 244/244
(100 %)
0 diff
(100 %id)
BF805797 colon_ins .a 5329 to 5620 1 to 291       291/292
(99 %)
11 diff
(96.3 %id)
DN604416   .a 5450 to 5642 194 to 1       194/196
(98 %)
1 diff
(99.5 %id)
CX788721 human embryonic stem cells .a 5471 to 6301 1 to 831       831/831
(100 %)
0 diff
(100 %id)
CX163389 human embryonic stem cells differentiated toan early endodermal cell type .a 5531 to 6321 1 to 791       791/791
(100 %)
0 diff
(100 %id)
BM728274 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5534 to 5955 1 to 422       422/422
(100 %)
0 diff
(100 %id)
DA570711 whole embryo, mainly head .a 5579 to 6372 2 to 794   capped   793/795
(99 %)
5 diff
(99.4 %id)
BF373095 prostate_tumor .a 5645 to 6033 1 to 389       389/389
(100 %)
0 diff
(100 %id)
BI093487 cervix .a 5651 to 6423 1 to 776       776/776
(100 %)
8 diff
(99.0 %id)
BI093583 cervix .a 5651 to 6312 1 to 664       664/664
(100 %)
2 diff
(99.7 %id)
CX752796 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 5718 to 6423 1 to 697     Submitted on the opposite strand 697/755
(92 %)
10 diff
(98.7 %id)
CX760864 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 5726 to 6475 1 to 738     Submitted on the opposite strand 738/832
(88 %)
18 diff
(97.9 %id)
BE541244 cervix .a 5744 to 6455 1 to 717       717/767
(93 %)
31 diff
(96.0 %id)
AA176289   .a 5761 to 6347 586 to 1       586/587
(99 %)
8 diff
(98.7 %id)
CK822093 Pancreas, Purified pancreatic islet .a 5789 to 6354 577 to 12   AAA Submitted on the opposite strand 566/583
(97 %)
0 diff
(100 %id)
BM312527 Pancreas, Purified pancreatic islet .a 5807 to 6267 1 to 461       461/461
(100 %)
0 diff
(100 %id)
BI712988 Pancreas, Purified pancreatic islet .a 5807 to 6082 1 to 276   fully sequenced,   276/276
(100 %)
0 diff
(100 %id)
AI341253 pooled germ cell tumors .a 5825 to 6357 534 to 1       534/534
(100 %)
14 diff
(97.4 %id)
BF059563 pooled germ cell tumors .a 5826 to 6354 529 to 1       529/529
(100 %)
0 diff
(100 %id)
BE549861 pooled germ cell tumors .a 5854 to 6354 501 to 1       501/501
(100 %)
0 diff
(100 %id)
AI476272 Kidney .a 5857 to 6356 499 to 1       499/502
(99 %)
1 diff
(99.9 %id)
BM353106 Pancreas, Purified pancreatic islet .a 5877 to 6354 478 to 1       478/478
(100 %)
0 diff
(100 %id)
AI631533 pooled germ cell tumors .a 5886 to 6346 469 to 9       461/469
(98 %)
0 diff
(100 %id)
CK822092 Pancreas, Purified pancreatic islet .a 5905 to 6354 1 to 450   AAA Submitted on the opposite strand 450/450
(100 %)
0 diff
(100 %id)
AA609460   .a 5936 to 6357 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AA503370 colon .a 6041 to 6355 314 to 1       314/314
(100 %)
2 diff
(99.4 %id)
BI791578 Pancreas, Purified pancreatic islet .a 6052 to 6354 303 to 1   fully sequenced,   303/303
(100 %)
0 diff
(100 %id)
CX783306 human embryonic stem cells .a 6085 to 6924 1 to 840   tiling clone,   840/840
(100 %)
0 diff
(100 %id)
AI797388 pooled .a 6125 to 6354 230 to 1       230/230
(100 %)
0 diff
(100 %id)
CN369187 embryonic stem cells, DMSO-treated H9 cellline .a 6163 to 6585 1 to 423       423/423
(100 %)
2 diff
(99.6 %id)
AA421578   .a 6195 to 6348 1 to 153       153/168
(91 %)
3 diff
(98.3 %id)
AA310749   .a 6254 to 6743 1 to 490       490/491
(99 %)
6 diff
(98.8 %id)
AW965745   .a 6255 to 6753 1 to 497       497/558
(89 %)
8 diff
(98.6 %id)
BE279239 choriocarcinoma, placenta .a 6319 to 6850 1 to 532       532/532
(100 %)
7 diff
(98.7 %id)
BI334648 cervical carcinoma cell line, cervix .a 6328 to 7045 1 to 716   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 716/716
(100 %)
3 diff
(99.6 %id)
BF509290   .a 6351 to 6830 480 to 1       480/483
(99 %)
3 diff
(99.4 %id)
N40774 placenta .a 6357 to 6679 1 to 327   fully sequenced,   327/327
(100 %)
2 diff
(99.4 %id)
BU622921 cell lines, Chondrosarcoma .a 6377 to 7045 687 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 669/669
(100 %)
0 diff
(100 %id)
BE540373 cervix .a 6397 to 7041 1 to 640       640/640
(100 %)
8 diff
(98.8 %id)
DB366764   .a 6516 to 7052 532 to 1   tiling clone,   532/537
(99 %)
7 diff
(98.7 %id)
AI419976 pooled .a 6564 to 7050 492 to 6       487/492
(98 %)
0 diff
(100 %id)
AA494200 thyroid .a 6567 to 6999 39 to 472       434/472
(91 %)
6 diff
(98.8 %id)
BQ013360 placenta .a 6597 to 7045 467 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 449/449
(100 %)
0 diff
(100 %id)
AI708781 aorta .a 6604 to 7051 451 to 4       448/451
(99 %)
0 diff
(100 %id)
AW148861 brain, tumor, 5 pooled (see description) .a 6616 to 7047 445 to 14   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 432/432
(100 %)
3 diff
(99.4 %id)
AA760925 pooled germ cell tumors .a 6622 to 7045 434 to 12   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 423/423
(100 %)
1 diff
(99.8 %id)
BQ013408 placenta .a 6637 to 7045 427 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 409/409
(100 %)
0 diff
(100 %id)
N30069 placenta .a 6649 to 7047 400 to 1   fully sequenced,   400/400
(100 %)
3 diff
(99.3 %id)
DB357500 whole embryo, mainly head .a 6661 to 7051 391 to 1       391/391
(100 %)
1 diff
(99.8 %id)
AW081764 pooled .a 6670 to 7046 383 to 3       381/426
(89 %)
0 diff
(100 %id)
AA467752   .a 6682 to 7051 1 to 369   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 369/369
(100 %)
9 diff
(97.6 %id)
AW628978 pooled .a 6692 to 7046 358 to 3       356/358
(99 %)
0 diff
(100 %id)
AW613132 colon, moderately-differentiated adenocarcinoma .a 6705 to 7046 359 to 18       342/359
(95 %)
0 diff
(100 %id)
AA935140 pooled .a 6711 to 7046 338 to 3       336/338
(99 %)
0 diff
(100 %id)
BE899143 adenocarcinoma cell line, ovary .a 6717 to 7043 1 to 327       327/327
(100 %)
0 diff
(100 %id)
AW452427   .a 6831 to 7045 232 to 18   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 215/215
(100 %)
0 diff
(100 %id)
AA467934   .a 6880 to 7051 177 to 5       173/177
(97 %)
0 diff
(100 %id)
S83309   .b 1 to 1890 9 to 1898 exact tiling clone, AAA   1890/1898
(99 %)
6 diff
(99.7 %id)
BM787010 Ascites, stomach .c 1 to 248 7 to 254   tiling clone,   248/254
(97 %)
6 diff
(97.7 %id)
BC042406.
matches multiple genes
testis .c 32 to 1934 1 to 1903   available from MGC, AAA also hits gene floywubo 1903/1903
(100 %)
5 diff
(99.8 %id)
BC042395.
matches multiple genes
testis .c 32 to 1934 1 to 1903 exact tiling clone, available from MGC, AAA Submitted on the opposite strand, also hits gene ARSJ 1903/1903
(100 %)
5 diff
(99.8 %id)
BC030600 testis .c 35 to 1934 8 to 1907 exact tiling clone, available from MGC, AAA   1900/1907
(99 %)
7 diff
(99.7 %id)
NM_001489.3   .c 48 to 1934 1 to 1887 exact RefSeq, AAA   1887/1887
(100 %)
0 diff
(100 %id)
BE731749 choriocarcinoma, placenta .d 1 to 742 1 to 734 C21V D23T R24A A25L T26Q ... tiling clone,   734/776
(94 %)
11 diff
(98.6 %id)
BX340753   .e 1 to 694 1 to 690   tiling clone,   690/690
(100 %)
6 diff
(99.2 %id)
AW237089 pooled germ cell tumors Gene NR6A1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI