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Gene NR3C2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
133 supporting clones for gene NR3C2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_000901.4   .a 1 to 5897 1 to 5897 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 5897/5897
(100 %)
0 diff
(100 %id)
M16801   .a 148 to 5893 1 to 5749 V180I V241A tiling clone,   5749/5749
(100 %)
11 diff
(99.9 %id)
AB209056 brain .a 755 to 3383 1 to 2629   tiling clone,   2629/2629
(100 %)
2 diff
(100.0 %id)
CB159499 Liver .a 2099 to 2678 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BX479275   .a 2101 to 2452 1 to 352       352/352
(100 %)
1 diff
(99.8 %id)
AA886743 carcinoid, lung .a 2119 to 2568 536 to 87   AAA   450/536
(83 %)
7 diff
(98.7 %id)
CR979406 T-Lymphocytes .a 2188 to 2523 1 to 335       335/335
(100 %)
1 diff
(99.8 %id)
AA149749 colon, tumor .a 2456 to 3015 1 to 551     Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 551/603
(91 %)
16 diff
(97.4 %id)
AA151766 colon, tumor .a 3198 to 3768 576 to 13   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 564/570
(98 %)
9 diff
(98.5 %id)
DB232659 trachea .b 1 to 537 2 to 538   tiling clone, capped   537/537
(100 %)
1 diff
(99.9 %id)
NM_001166104.1   .b 2 to 5547 1 to 5546 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 5546/5546
(100 %)
0 diff
(100 %id)
DB061545 testis .b 31 to 606 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB442126 testis .b 55 to 482 1 to 428       428/428
(100 %)
10 diff
(97.7 %id)
DA328554 hippocampus .b 109 to 654 2 to 548   capped   547/547
(100 %)
3 diff
(99.5 %id)
CT001398 T-Lymphocytes .b 137 to 954 1 to 820       820/820
(100 %)
3 diff
(99.7 %id)
AL708971 human skeletal muscle .b 147 to 827 1 to 677       677/677
(100 %)
5 diff
(99.3 %id)
DA241830 brain .b 190 to 776 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
BC111758 PCR rescued clones .b 298 to 4119 1 to 3822 V180I F829I tiling clone,   3822/3822
(100 %)
3 diff
(100.0 %id)
AW384843 head_neck .b 490 to 1096 1 to 608       608/673
(90 %)
39 diff
(94.3 %id)
BE841241 stomach_normal .b 686 to 1044 11 to 369       359/369
(97 %)
6 diff
(98.4 %id)
BI035336 nervous_normal .b 829 to 1380 574 to 19       556/575
(96 %)
0 diff
(100 %id)
CK429233 eye, lacrimal gland .b 852 to 1496 1 to 645   tiling clone,   645/645
(100 %)
0 diff
(100 %id)
DA856268 placenta .b 852 to 1441 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
D57171   .b 1389 to 1781 1 to 392       392/400
(98 %)
8 diff
(98.0 %id)
AL041328 testis .b 1393 to 1809 1 to 417       417/418
(99 %)
2 diff
(99.6 %id)
BP198835 brain .b 1563 to 2121 1 to 559       559/581
(96 %)
2 diff
(99.7 %id)
DA405715 thalamus .b 1617 to 2121 2 to 506   capped   505/558
(90 %)
2 diff
(99.7 %id)
AJ315515   .b 2278 to 2615 1 to 338       338/338
(100 %)
0 diff
(100 %id)
DA800781 brain .b 2383 to 2929 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BM714773 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2426 to 3057 1 to 632   fully sequenced,   632/632
(100 %)
4 diff
(99.4 %id)
BM714196 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2427 to 3008 1 to 582       582/582
(100 %)
0 diff
(100 %id)
TI_154117932   .b 2524 to 3388 946 to 83   AAA   864/1001
(86 %)
32 diff
(96.9 %id)
CB162776 Liver .b 2572 to 3151 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
BQ892596 dorsal root ganglia .b 2683 to 3573 1 to 898       898/898
(100 %)
11 diff
(98.8 %id)
AI201179   .b 2686 to 3455 787 to 17   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 771/771
(100 %)
23 diff
(97.1 %id)
CD370581 Alveolar Macrophage, lung .b 2692 to 3456 771 to 16   tiling clone,   756/781
(96 %)
10 diff
(98.8 %id)
TI_149277209   .b 2735 to 3457 805 to 84   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 722/723
(99 %)
3 diff
(99.6 %id)
BM676581 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2739 to 3428 705 to 17   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 689/689
(100 %)
3 diff
(99.6 %id)
BM968064 lung, Primary Lung Epithelial Cells .b 2756 to 3457 717 to 17   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 701/701
(100 %)
3 diff
(99.6 %id)
BP391639 pancreatic islet .b 2922 to 3421 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
DB467636 hippocampus .b 2925 to 3348 1 to 425       425/425
(100 %)
6 diff
(98.6 %id)
AA568349 colon, colon tumor RER+ .b 2925 to 3428 504 to 1       504/504
(100 %)
3 diff
(99.5 %id)
AI698649 pooled .b 2970 to 3428 458 to 1       458/458
(100 %)
21 diff
(95.5 %id)
DB208787 trachea .b 2988 to 3536 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BU739020 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3027 to 3435 410 to 2       409/410
(99 %)
0 diff
(100 %id)
BU739698 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3027 to 3422 421 to 26   fully sequenced, AAA   396/403
(98 %)
0 diff
(100 %id)
DB508137 testis .b 3035 to 3455 1 to 421     Submitted on the opposite strand 421/421
(100 %)
1 diff
(99.8 %id)
BX951992   .b 3052 to 3625 1 to 572       572/572
(100 %)
5 diff
(99.2 %id)
AI692765 carcinoid, lung .b 3263 to 3405 1 to 142     Submitted on the opposite strand 142/142
(100 %)
5 diff
(96.5 %id)
BE327401 carcinoid, lung .b 3265 to 3405 1 to 141     Submitted on the opposite strand 141/141
(100 %)
0 diff
(100 %id)
AA744953 breast .b 3360 to 3996 643 to 1       643/654
(98 %)
22 diff
(96.7 %id)
BP219973 colon .b 3409 to 4007 1 to 598       598/598
(100 %)
12 diff
(98.0 %id)
BP220450 colon .b 3424 to 3991 1 to 567       567/567
(100 %)
5 diff
(99.2 %id)
DA934468 Spleen .b 3437 to 3923 2 to 488   capped   487/487
(100 %)
2 diff
(99.6 %id)
AA744951 breast .b 3446 to 3970 527 to 1       527/527
(100 %)
19 diff
(96.4 %id)
AA447384   .b 3469 to 3564 1 to 97       97/97
(100 %)
16 diff
(83.6 %id)
AW361986 colon .b 3551 to 4140 1 to 590       590/590
(100 %)
11 diff
(98.2 %id)
AU121371 whole embryo, mainly body .b 3816 to 4603 2 to 785   capped   784/784
(100 %)
11 diff
(98.6 %id)
DA057219 cerebellum .b 3881 to 4479 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
W28534 eye, retina .b 4023 to 4578 26 to 579   tiling clone,   554/604
(91 %)
10 diff
(98.4 %id)
DA085901 cerebellum .b 4044 to 4593 2 to 551   tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
AV651840 corresponding non cancerous liver tissue .b 4070 to 4543 1 to 474     Submitted on the opposite strand 474/474
(100 %)
2 diff
(99.6 %id)
R23550 whole brain .b 4207 to 4644 1 to 446     Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 446/446
(100 %)
12 diff
(97.4 %id)
BQ320504 colon .b 4253 to 4415 169 to 4       166/186
(89 %)
0 diff
(100 %id)
T29894 thyroid gland .b 4455 to 4703 1 to 250       250/253
(98 %)
3 diff
(98.9 %id)
AW945145   .b 4456 to 5122 1 to 670       670/673
(99 %)
13 diff
(98.1 %id)
AW945146   .b 4456 to 5089 1 to 641       641/648
(98 %)
16 diff
(97.6 %id)
BU187996 testis .b 4489 to 5269 1 to 784   tiling clone,   784/789
(99 %)
7 diff
(99.2 %id)
W24096 lung .b 4640 to 4889 1 to 250       250/257
(97 %)
1 diff
(99.7 %id)
AI183952   .b 4749 to 5545 812 to 6       807/812
(99 %)
0 diff
(100 %id)
BQ083864 stomach .b 4767 to 5333 1 to 567       567/567
(100 %)
0 diff
(100 %id)
BM819064 stomach .b 4767 to 4975 1 to 209       209/209
(100 %)
0 diff
(100 %id)
BM823641 stomach .b 4767 to 5277 1 to 511       511/511
(100 %)
0 diff
(100 %id)
BM823335 stomach .b 4767 to 5205 1 to 439       439/439
(100 %)
3 diff
(99.4 %id)
BM823518 stomach .b 4767 to 5345 1 to 579       579/579
(100 %)
10 diff
(98.3 %id)
BM823553 stomach .b 4767 to 5339 1 to 573       573/573
(100 %)
8 diff
(98.7 %id)
BM830782 stomach .b 4767 to 5482 1 to 716       716/716
(100 %)
1 diff
(99.9 %id)
BM830693 stomach .b 4767 to 5390 1 to 624       624/624
(100 %)
0 diff
(100 %id)
BU608557 Human Lung Epithelial cells, lung .b 4777 to 5547 786 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 768/771
(99 %)
5 diff
(99.4 %id)
BQ187633 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 4786 to 5391 1 to 606       606/606
(100 %)
0 diff
(100 %id)
AI458972 carcinoid, lung .b 4798 to 5222 429 to 1       429/429
(100 %)
15 diff
(96.6 %id)
BM823490 stomach .b 4806 to 5339 1 to 533       533/533
(100 %)
9 diff
(98.4 %id)
BM819087 stomach .b 4809 to 5232 1 to 423       423/423
(100 %)
2 diff
(99.6 %id)
AW190993 adenocarcinoma, Pancreas .b 4832 to 5548 723 to 3       721/723
(99 %)
0 diff
(100 %id)
AI634663 Kidney .b 4870 to 5547 695 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 677/677
(100 %)
5 diff
(99.3 %id)
AI765359 2 pooled tumors (clear cell type), Kidney .b 4870 to 5545 677 to 2       676/677
(99 %)
0 diff
(100 %id)
BQ187746 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 4874 to 5547 1 to 674   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 674/674
(100 %)
3 diff
(99.6 %id)
AI741201 pooled .b 4892 to 5538 649 to 4       646/649
(99 %)
0 diff
(100 %id)
AW418944 2 pooled tumors (clear cell type), Kidney .b 4909 to 5548 644 to 5       640/644
(99 %)
0 diff
(100 %id)
CB242112 Human Lung Epithelial cells, lung .b 4928 to 5543 634 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 616/625
(98 %)
1 diff
(99.9 %id)
AI767551 Kidney .b 4951 to 5535 597 to 15       583/597
(97 %)
0 diff
(100 %id)
AA679687   .b 4960 to 5434 477 to 1       477/477
(100 %)
10 diff
(98.0 %id)
AW772342 Kidney .b 4970 to 5550 581 to 1   tiling clone,   581/581
(100 %)
10 diff
(98.3 %id)
AW629508 pooled .b 4971 to 5547 588 to 12   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 577/577
(100 %)
7 diff
(98.8 %id)
BE504300 carcinoid, lung .b 4976 to 5544 569 to 1       569/569
(100 %)
1 diff
(99.9 %id)
AI251790 brain, tumor, 5 pooled (see description) .b 4984 to 5545 561 to 1       561/561
(100 %)
23 diff
(96.0 %id)
CA449982 Human Lung Epithelial cells, lung .b 4986 to 5460 119 to 593     Submitted on the opposite strand 475/602
(78 %)
2 diff
(99.7 %id)
DB360394 whole embryo, mainly body .b 4994 to 5545 551 to 3       549/551
(99 %)
0 diff
(100 %id)
FN075155 breast carcinoma .b 4999 to 5079 1 to 81       81/81
(100 %)
0 diff
(100 %id)
AI522294 Kidney .b 5000 to 5545 548 to 3       546/551
(99 %)
0 diff
(100 %id)
BF433882 carcinoid, lung .b 5005 to 5545 544 to 4       541/544
(99 %)
0 diff
(100 %id)
AA724341 parathyroid gland, parathyroid tumor .b 5043 to 5475 443 to 3       441/443
(99 %)
0 diff
(100 %id)
AW615402 Kidney .b 5044 to 5547 503 to 1       503/503
(100 %)
1 diff
(99.9 %id)
DB507025 testis .b 5066 to 5543 1 to 472     Submitted on the opposite strand 472/472
(100 %)
14 diff
(97.1 %id)
DB527512 testis .b 5077 to 5547 1 to 471     Submitted on the opposite strand 471/472
(99 %)
1 diff
(99.8 %id)
AA470665 colon .b 5078 to 5547 470 to 1       470/478
(98 %)
25 diff
(94.8 %id)
AI537570 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 5107 to 5548 443 to 3       441/486
(90 %)
0 diff
(100 %id)
AI458375 carcinoid, lung .b 5126 to 5538 410 to 4       407/433
(93 %)
0 diff
(100 %id)
CK826531 Pancreas, Purified pancreatic islet .b 5141 to 5548 420 to 13   tiling clone, Submitted on the opposite strand 408/420
(97 %)
0 diff
(100 %id)
BU532527 mixed (pool of 40 RNAs) .b 5141 to 5543 1 to 403       403/407
(99 %)
3 diff
(99.3 %id)
BX108549 whole brain .b 5144 to 5547 418 to 15   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 404/404
(100 %)
1 diff
(99.8 %id)
AW768901 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 5146 to 5547 406 to 1       406/409
(99 %)
5 diff
(98.8 %id)
AA447079   .b 5184 to 5543 359 to 1       359/366
(98 %)
0 diff
(100 %id)
T23537   .b 5217 to 5550 339 to 5       335/339
(98 %)
0 diff
(100 %id)
BF437655 Prostate .b 5227 to 5546 320 to 1       320/320
(100 %)
4 diff
(98.8 %id)
AI783744 Prostate .b 5236 to 5543 318 to 11       308/318
(96 %)
0 diff
(100 %id)
R44301 whole brain .b 5265 to 5547 299 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 287/290
(98 %)
8 diff
(97.3 %id)
D56621   .b 5287 to 5547 1 to 259       259/259
(100 %)
4 diff
(98.5 %id)
N91919 lung .b 5334 to 5543 210 to 1       210/210
(100 %)
1 diff
(99.6 %id)
CA952486 Pancreas, Purified pancreatic islet .b 5359 to 5548 193 to 4     Submitted on the opposite strand 190/193
(98 %)
0 diff
(100 %id)
FN130282 breast carcinoma .b 5453 to 5545 1 to 93       93/96
(96 %)
2 diff
(98.0 %id)
AJ315514   .c 1 to 3123 1 to 3125 exact tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 3125/3125
(100 %)
3 diff
(100.0 %id)
DA189088 amygdala .d 1 to 550 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
DA189095 amygdala .d 1 to 548 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA326612 hippocampus .d 16 to 565 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DR006394 Prostate .d 122 to 823 1 to 702   tiling clone,   702/702
(100 %)
4 diff
(99.5 %id)
AU137019 placenta .d 346 to 1038 2 to 697   tiling clone, capped   696/710
(98 %)
11 diff
(98.5 %id)
DB462081 testis .e 1 to 489 1 to 489   tiling clone,   489/489
(100 %)
3 diff
(99.4 %id)
AA725764   .e 367 to 868 504 to 2   tiling clone,   503/504
(99 %)
5 diff
(99.1 %id)
AI352592 pooled germ cell tumors .e 421 to 877 461 to 4   tiling clone,   458/547
(83 %)
10 diff
(98.2 %id)
AA682777   .f 1 to 491 493 to 3 exact tiling clone,   491/493
(99 %)
0 diff
(100 %id)
AK123047 small intestine .g-u 1 to 2580 2 to 2592   tiling clone, available from FLJ,   2592/2592
(100 %)
34 diff
(98.7 %id)
DA921067 small intestine .g-u 1 to 560 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DB331920 small intestine .g-u 2025 to 2580 556 to 1   tiling clone,   556/556
(100 %)
1 diff
(99.9 %id)
AW025027 Kidney .g-u 2139 to 2581 443 to 1       443/443
(100 %)
2 diff
(99.6 %id)
BX473629   Gene NR3C2, variant not shown         This clone was ignored    
BM682109 eye, fetal eye Gene NR3C2, variant not shown       AAA This clone was ignored    
BM729184 eye, fetal eye Gene NR3C2, variant not shown         This clone was ignored    
DB312243 thalamus Gene NR3C2, variant not shown         This clone was ignored    
DA402885 thalamus Gene NR3C2, variant not shown       capped This clone was ignored    
DB448988 testis Gene NR3C2, variant not shown         This clone was ignored    
AK304318 trachea Gene NR3C2, variant not shown         Suspected internal deletion, this clone was ignored    
R97953 liver and spleen Gene NR3C2, variant not shown         This clone was ignored    
R97954 liver and spleen Gene NR3C2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI