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Gene NR2C1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
317 supporting clones for gene NR2C1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN408782 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1 to 576 1 to 576   tiling clone,   576/576
(100 %)
4 diff
(99.4 %id)
NM_003297.2   .a 82 to 4094 1 to 4013 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 4013/4013
(100 %)
0 diff
(100 %id)
DB266298 uterus .a 83 to 657 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BU536968 mixed (pool of 40 RNAs) .a 86 to 540 1 to 455       455/487
(93 %)
5 diff
(99.0 %id)
DA559140   .a 90 to 638 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DB221393 trachea .a 90 to 635 2 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
DB279761 uterus .a 90 to 646 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DB124318 thymus .a 93 to 648 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CN408783 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 95 to 629 1 to 535       535/535
(100 %)
4 diff
(99.3 %id)
CB998151 placenta, pre-eclamptic placenta .a 95 to 824 28 to 753       726/753
(96 %)
9 diff
(98.9 %id)
DA108909 cerebellum .a 96 to 680 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA389772 thalamus .a 96 to 640 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA420658 cervix .a 96 to 640 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
AU127636   .a 96 to 802 2 to 705   capped   704/715
(98 %)
8 diff
(98.9 %id)
AU129837   .a 96 to 801 2 to 717   capped   716/718
(99 %)
17 diff
(97.7 %id)
AU130255   .a 96 to 904 2 to 810   capped   809/809
(100 %)
8 diff
(99.1 %id)
DA746326   .a 96 to 640 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA756379   .a 96 to 637 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA881043   .a 96 to 640 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA908767   .a 96 to 651 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DB148606 thymus .a 96 to 661 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB247215 uterus .a 96 to 860 2 to 766   capped   765/766
(99 %)
3 diff
(99.7 %id)
DA477663   .a 99 to 477 2 to 381   capped   380/380
(100 %)
2 diff
(99.5 %id)
DA527664 brain .a 99 to 665 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA550456   .a 99 to 664 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
DA929316 small intestine .a 99 to 395 2 to 298   capped   297/297
(100 %)
0 diff
(100 %id)
DB163846 thymus .a 99 to 688 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DB242315 stomach, tumor tissue .a 100 to 583 2 to 487   capped   486/486
(100 %)
4 diff
(99.2 %id)
AU128967   .a 104 to 658 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DA929612 small intestine .a 104 to 662 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
AL526806 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 105 to 1121 1 to 1019       1019/1019
(100 %)
39 diff
(96.2 %id)
AL525589 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 108 to 1113 1 to 994       994/1004
(99 %)
9 diff
(99.2 %id)
BX385627 Neuroblastoma Cot 25-normalized .a 108 to 1123 1 to 998       998/998
(100 %)
16 diff
(98.4 %id)
AK291319 tongue .a 118 to 2269 1 to 2152 N291K D304N     2152/2152
(100 %)
2 diff
(100.0 %id)
TI_57146613   .a 124 to 985 32 to 888       859/888
(96 %)
22 diff
(97.6 %id)
BM906147 ovary (pool of 3) .a 129 to 1030 19 to 929       911/1218
(74 %)
30 diff
(97.6 %id)
BI764118 pooled colon, kidney, stomach .a 130 to 985 1 to 851       853/851
(100 %)
16 diff
(98.2 %id)
AL561541 B cells from Burkitt lymphoma .a 173 to 1123 1 to 944       944/944
(100 %)
7 diff
(99.3 %id)
AU138713 placenta .a 174 to 911 2 to 742   capped   741/741
(100 %)
8 diff
(99.0 %id)
AL513888 placenta .a 186 to 1234 1 to 1040     Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 1040/1096
(94 %)
11 diff
(99.0 %id)
AL555839 placenta .a 196 to 1210 1 to 1016       1016/1025
(99 %)
8 diff
(99.3 %id)
M29960   .a 278 to 2483 1 to 2202 Q520L tiling clone,   2202/2202
(100 %)
7 diff
(99.7 %id)
TI_1948156450   .a 337 to 1121 131 to 922       792/1242
(63 %)
30 diff
(97.6 %id)
TI_1948156801   .a 337 to 1121 129 to 914   fully sequenced,   786/914
(85 %)
11 diff
(98.8 %id)
EL733779 mixed .a 338 to 932 1 to 595       595/595
(100 %)
0 diff
(100 %id)
TI_1948156277   .a 338 to 1222 133 to 1023       891/1234
(72 %)
38 diff
(97.0 %id)
TI_1948156624   .a 338 to 1090 135 to 887   fully sequenced,   753/887
(84 %)
12 diff
(98.7 %id)
BM557938 duodenal adenocarcinoma, cell line, small intestine .a 363 to 1121 1 to 763       763/1019
(74 %)
6 diff
(99.5 %id)
BG575075 breast, mammary adenocarcinoma, cell line .a 454 to 945 67 to 571       505/664
(76 %)
30 diff
(95.5 %id)
BG682389 skin, squamous cell carcinoma .a 608 to 1359 1 to 754       752/754
(99 %)
10 diff
(98.7 %id)
BX350761   .a 624 to 1409 811 to 23       789/954
(82 %)
17 diff
(98.3 %id)
CB154735 brain .a 808 to 1334 1 to 527       527/527
(100 %)
0 diff
(100 %id)
BP377538 uterus .a 849 to 1428 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BE883090 leiomyosarcoma, uterus .a 877 to 1585 1 to 716       716/952
(75 %)
19 diff
(98.1 %id)
AA381676   .a 950 to 1245 1 to 297       297/300
(99 %)
2 diff
(99.4 %id)
AA300579 testis .a 991 to 1274 1 to 284       284/284
(100 %)
0 diff
(100 %id)
CN408777 embryonic stem cells, DMSO-treated H9 cellline .a 1017 to 1724 1 to 708       708/708
(100 %)
0 diff
(100 %id)
CD518994 White Matter .a 1046 to 1736 27 to 718       692/1040
(66 %)
10 diff
(99.1 %id)
TI_1948156625   .a 1060 to 1730 805 to 132   fully sequenced,   674/805
(83 %)
3 diff
(99.7 %id)
TI_1948156802   .a 1090 to 1730 795 to 155   fully sequenced,   641/795
(80 %)
3 diff
(99.7 %id)
BX498859 Liver .a 1164 to 1864 1 to 701       701/701
(100 %)
0 diff
(100 %id)
CA397645 eye, RPE/choroid .a 1171 to 1724 1 to 553       553/553
(100 %)
6 diff
(99.0 %id)
AK304597 uterus .a 1197 to 2285 761 to 1849       1089/1849
(58 %)
8 diff
(99.6 %id)
H75390 liver and spleen .a 1233 to 1591 1 to 360       360/436
(82 %)
2 diff
(99.6 %id)
AW021046 cochlea, ear .a 1284 to 1813 8 to 537       530/537
(98 %)
6 diff
(98.9 %id)
BU569062 testis .a 1346 to 1969 1 to 627       627/864
(72 %)
12 diff
(98.7 %id)
FN085754 breast carcinoma .a 1353 to 1404 52 to 1     Submitted on the opposite strand 52/53
(98 %)
0 diff
(100 %id)
AL562529 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1370 to 2455 1076 to 1       1076/1114
(96 %)
20 diff
(98.3 %id)
BU853233 testis .a 1377 to 2147 1 to 779       779/779
(100 %)
11 diff
(98.6 %id)
CB160438 Liver .a 1388 to 1976 1 to 590       590/593
(99 %)
2 diff
(99.7 %id)
AL555838 placenta .a 1468 to 2452 987 to 2       986/987
(99 %)
2 diff
(99.8 %id)
FN049028 breast carcinoma .a 1527 to 1595 1 to 70       70/73
(95 %)
4 diff
(94.6 %id)
AL513887 placenta .a 1590 to 2483 939 to 50   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 890/890
(100 %)
5 diff
(99.5 %id)
BX364457 Neuroblastoma Cot 25-normalized .a 1590 to 2455 867 to 1       867/867
(100 %)
1 diff
(99.9 %id)
AL526777 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1592 to 2454 877 to 1       877/877
(100 %)
69 diff
(92.2 %id)
CA310258 Alveolar Macrophage, lung .a 1757 to 2483 743 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 725/732
(99 %)
1 diff
(99.9 %id)
BF109885 pooled .a 1784 to 2483 697 to 1       697/697
(100 %)
11 diff
(98.5 %id)
BQ432556 testis .a 1792 to 2480 1 to 696       696/709
(98 %)
12 diff
(98.4 %id)
BU622664 cell lines, Chondrosarcoma .a 1820 to 2483 682 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 664/664
(100 %)
1 diff
(99.9 %id)
BM998591 lung, Metastatic Chondrosarcoma .a 1850 to 2483 652 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 634/634
(100 %)
0 diff
(100 %id)
BI491996 cochlea, ear .a 1860 to 2473 637 to 24   AAA   614/624
(98 %)
0 diff
(100 %id)
AI431858 Kidney .a 1863 to 2483 616 to 3       614/618
(99 %)
8 diff
(98.8 %id)
AW073142 brain, glioblastoma (pooled) .a 1866 to 2484 620 to 1       620/740
(83 %)
4 diff
(99.5 %id)
BM313468 Pancreas, Purified pancreatic islet .a 1880 to 2484 605 to 1       605/605
(100 %)
7 diff
(98.9 %id)
DB447805 testis .a 1881 to 2319 1 to 438       438/438
(100 %)
4 diff
(99.1 %id)
BM272208 Pancreas, Purified pancreatic islet .a 1883 to 2484 602 to 1   tiling clone,   602/602
(100 %)
0 diff
(100 %id)
AI983624 adenocarcinoma, Pancreas .a 1892 to 2484 591 to 1       591/591
(100 %)
4 diff
(99.4 %id)
T27625 adipose .a 1893 to 2185 1 to 295       295/295
(100 %)
2 diff
(99.4 %id)
AW272476 pooled .a 1908 to 2485 579 to 2       578/590
(97 %)
8 diff
(98.7 %id)
AI686942 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 1922 to 2485 585 to 24       562/585
(96 %)
3 diff
(99.5 %id)
AW105139 pooled .a 1950 to 2485 549 to 14   tiling clone,   536/549
(97 %)
2 diff
(99.7 %id)
BQ028119 mixed .a 1964 to 2483 538 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 520/528
(98 %)
0 diff
(100 %id)
AU152246   .a 1974 to 2483 508 to 1       508/542
(93 %)
7 diff
(98.8 %id)
AU157715 placenta .a 1976 to 2483 508 to 1       508/555
(91 %)
6 diff
(99.0 %id)
AU151910   .a 1982 to 2483 503 to 1       503/507
(99 %)
2 diff
(99.7 %id)
AU150164   .a 1983 to 2483 505 to 1       505/525
(96 %)
21 diff
(96.0 %id)
H68838 liver and spleen .a 2057 to 2485 443 to 6       438/480
(91 %)
0 diff
(100 %id)
DB350795 uterus .a 2110 to 2483 374 to 1       374/374
(100 %)
0 diff
(100 %id)
NM_001127362.1   .b 1 to 2113 1 to 2113 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 2113/2113
(100 %)
0 diff
(100 %id)
CR590188 B cells (Ramos cell line) Cot 25-normalized .b 92 to 2085 1 to 1994 exact tiling clone,   1994/1994
(100 %)
0 diff
(100 %id)
BX341405   .b 126 to 1030 1 to 902       902/902
(100 %)
4 diff
(99.6 %id)
M21985   .b 136 to 2100 10 to 1970 exact tiling clone,   1961/2029
(96 %)
14 diff
(99.4 %id)
AL582716 B cells from Burkitt lymphoma .b 1120 to 2061 946 to 24       923/983
(93 %)
18 diff
(98.2 %id)
BX374052   .b 1743 to 2108 373 to 4   tiling clone,   370/415
(89 %)
0 diff
(100 %id)
NM_001032287.2   .c 1 to 1869 1 to 1869 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 1869/1869
(100 %)
0 diff
(100 %id)
BC040141 Colon, Kidney, Stomach, adult, whole pooled .c 49 to 1869 1 to 1821 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 1821/1821
(100 %)
0 diff
(100 %id)
M29959   .c 136 to 1856 10 to 1726 exact     1717/1785
(96 %)
14 diff
(99.3 %id)
R52304 whole brain .c 298 to 689 1 to 392     Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 392/393
(99 %)
4 diff
(99.0 %id)
R54467 whole brain .c 1511 to 1869 375 to 14   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 362/379
(95 %)
8 diff
(97.9 %id)
DB448296 testis .d 1 to 433 1 to 435   tiling clone,   435/435
(100 %)
7 diff
(98.4 %id)
AB307707   .d 386 to 1690 1 to 1305 C200S C265R Q415L tiling clone,   1305/1305
(100 %)
3 diff
(99.8 %id)
DT217617 brain .e 1 to 608 1 to 608 R198K tiling clone,   608/614
(99 %)
2 diff
(99.7 %id)
TI_149310393   .f 1 to 838 911 to 82 E2R Y5I I6S R7E K8D ... tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 828/904
(91 %)
23 diff
(97.5 %id)
BU688702 lung, Primary Lung Epithelial Cells .f 249 to 838 608 to 19   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 590/590
(100 %)
0 diff
(100 %id)
DA813401   .g 1 to 556 2 to 557 exact tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
T95992 liver and spleen .h 1 to 332 7 to 339   tiling clone,   333/383
(86 %)
10 diff
(97.4 %id)
T84513 liver and spleen .h 10 to 298 1 to 288   tiling clone,   288/288
(100 %)
6 diff
(98.0 %id)
BU616009 Bone, Subchondral Bone .h 90 to 822 751 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 733/733
(100 %)
2 diff
(99.8 %id)
CK023866 brain/CNS, Human Brain - Cerebellar Cortex .h 112 to 796 1 to 674 exact     674/676
(99 %)
25 diff
(96.4 %id)
BM272414 Pancreas, Purified pancreatic islet .h 114 to 737 11 to 634 exact     624/634
(98 %)
6 diff
(99.1 %id)
T95892 liver and spleen .h 543 to 775 233 to 1       233/233
(100 %)
7 diff
(97.0 %id)
CN408784 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 1 to 758 4 to 763 exact tiling clone,   763/763
(100 %)
4 diff
(99.5 %id)
DB551567 hippocampus .i 338 to 581 1 to 245   AAA Submitted on the opposite strand 245/245
(100 %)
6 diff
(97.6 %id)
W39474 Pancreas, pancreatic islet .j 1 to 379 1 to 382 exact tiling clone,   382/382
(100 %)
3 diff
(99.3 %id)
AU126998   .k 1 to 760 2 to 771   tiling clone, capped   770/829
(92 %)
22 diff
(97.4 %id)
DA031193   .k 2 to 561 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA037363   .k 2 to 770 2 to 770   capped   769/825
(93 %)
4 diff
(99.6 %id)
DA474755   .k 2 to 568 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA551958   .k 2 to 517 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA624633 Kidney .k 2 to 551 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA658246   .k 2 to 567 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA763405 tongue .k 2 to 556 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA876276 Prostate .k 2 to 574 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB036059 testis .k 2 to 545 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB129547 thymus .k 2 to 524 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DB144095 thymus .k 2 to 546 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB263264 uterus .k 2 to 592 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB264695 uterus .k 2 to 598 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA933766 Spleen .k 4 to 579 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
CB054814 brain, glioblastoma (pooled) .k 9 to 614 1 to 606     Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 606/606
(100 %)
7 diff
(98.9 %id)
AA227068 brain, neuroepithelial cells .k 19 to 423 1 to 399       399/399
(100 %)
9 diff
(97.8 %id)
DA072158 cerebellum .k 20 to 609 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
DA099846 cerebellum .k 22 to 590 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA615936   .k 22 to 595 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA205427 brain .k 23 to 507 2 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
BC026074 testis .k 24 to 2518 6 to 2499 T72A tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 2494/2501
(99 %)
9 diff
(99.7 %id)
BG723005 testis .k 24 to 740 6 to 721   available from MGC,   716/721
(99 %)
10 diff
(98.7 %id)
D55230   .k 30 to 527 1 to 494       494/495
(99 %)
7 diff
(98.6 %id)
CD653602 Embryonic Stem cells .k 30 to 759 48 to 769       722/805
(89 %)
19 diff
(97.7 %id)
AU280557   .k 31 to 600 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DA101523 cerebellum .k 32 to 625 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA110430 cerebellum .k 32 to 588 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CN408778 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .k 32 to 297 1 to 266       266/266
(100 %)
0 diff
(100 %id)
DA547263   .k 32 to 592 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA679967   .k 32 to 595 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA956816 Spleen .k 32 to 590 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB136926 thymus .k 32 to 573 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA381862 thalamus .k 34 to 596 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
TI_44348513   .k 40 to 585 120 to 669       550/880
(62 %)
15 diff
(98.3 %id)
TI_44348819   .k 40 to 789 83 to 835 G151R S152T K153Q D154R C155I ...     753/835
(90 %)
15 diff
(98.3 %id)
DA877862 Prostate .k 41 to 339 2 to 300   capped   299/299
(100 %)
1 diff
(99.7 %id)
BI560186 testis .k 43 to 585 1 to 547       547/758
(72 %)
14 diff
(98.2 %id)
BI561141 testis .k 43 to 789 1 to 750 G151R S152T K153Q D154R C155I ...     750/750
(100 %)
14 diff
(98.2 %id)
DB447354 testis .k 48 to 491 1 to 444       444/444
(100 %)
2 diff
(99.6 %id)
DB497678 hypothalamus .k 48 to 553 1 to 506       506/506
(100 %)
0 diff
(100 %id)
DA010860 adrenal gland .k 49 to 632 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA156855 amygdala .k 49 to 598 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA269058 caudate nucleus .k 49 to 581 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA278044 corpus callosum .k 49 to 608 2 to 564   capped   563/563
(100 %)
5 diff
(99.2 %id)
DA530649 brain .k 49 to 623 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA551405   .k 49 to 553 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DA821437 pericardium .k 49 to 611 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA931249 Spleen .k 49 to 769 2 to 722   capped   721/721
(100 %)
0 diff
(100 %id)
DB005594 breast, tumor tissue .k 49 to 594 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB057364 testis .k 49 to 582 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB105201 thymus .k 49 to 600 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB126100 thymus .k 49 to 609 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB127402 thymus .k 49 to 602 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB146655 thymus .k 49 to 545 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DB178707 kidney, tumor tissue .k 49 to 597 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB247927 uterus .k 49 to 559 2 to 512   capped   511/511
(100 %)
1 diff
(99.9 %id)
DB263462 uterus .k 49 to 642 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DB272125 uterus .k 49 to 583 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DB284316 uterus .k 49 to 585 2 to 538   capped   537/539
(99 %)
3 diff
(99.5 %id)
DA361232 subthalamic nucleus .k 51 to 595 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA152077 amygdala .k 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA233988 brain .k 55 to 637 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA262879 caudate nucleus .k 55 to 611 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA276038 corpus callosum .k 55 to 607 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA745466   .k 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA958156 Spleen .k 56 to 599 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA077911 cerebellum .k 57 to 613 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA438350 tongue, tumor tissue .k 57 to 601 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DA941467 Spleen .k 57 to 651 2 to 595   capped   594/602
(98 %)
2 diff
(99.7 %id)
DA283970 corpus callosum .k 58 to 636 2 to 584   capped   583/583
(100 %)
8 diff
(98.7 %id)
DA313788 hippocampus .k 58 to 607 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA395358 thalamus .k 58 to 641 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CN408780 embryonic stem cells, cell lines H1, H7, andH9 .k 58 to 712 1 to 655       655/655
(100 %)
0 diff
(100 %id)
AU076765   .k 58 to 270 1 to 213       213/213
(100 %)
0 diff
(100 %id)
DA685469   .k 58 to 615 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA809861 brain .k 58 to 619 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA823778 pericardium .k 58 to 545 2 to 490   capped   489/489
(100 %)
2 diff
(99.6 %id)
DB109138 thymus .k 58 to 630 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB132848 thymus .k 58 to 599 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB139470 thymus .k 58 to 585 2 to 529   capped   528/531
(99 %)
2 diff
(99.7 %id)
DA110951 cerebellum .k 59 to 653 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DA944813 Spleen .k 59 to 601 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA013992 adrenal gland .k 61 to 624 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA391798 thalamus .k 61 to 627 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
AL121055 melanoma (MeWo cell line) .k 61 to 525 1 to 465       465/465
(100 %)
0 diff
(100 %id)
DA250837 caudate nucleus .k 63 to 641 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB133487 thymus .k 63 to 631 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB137836 thymus .k 63 to 622 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA323591 hippocampus .k 64 to 523 2 to 461   capped   460/460
(100 %)
1 diff
(99.8 %id)
CX869737 embryonic stem .k 68 to 771 1 to 704       704/704
(100 %)
1 diff
(99.9 %id)
DB461431 testis .k 69 to 560 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
DN996785 breast cancer, Mammary gland (cancer tissue) .k 74 to 732 1 to 659       659/659
(100 %)
8 diff
(98.8 %id)
DB482716 hippocampus .k 78 to 573 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
DA241371 brain .k 83 to 650 2 to 569   capped   568/571
(99 %)
1 diff
(99.9 %id)
DA200101 brain .k 84 to 665 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA218351 brain .k 84 to 629 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA298785 hippocampus .k 85 to 657 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA613083   .k 85 to 647 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB115982 thymus .k 85 to 638 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA174989 amygdala .k 86 to 640 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA951649 Spleen .k 86 to 642 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CN408781 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .k 91 to 810 1 to 722 A127S V128S T129N C130L E131*     722/722
(100 %)
4 diff
(99.5 %id)
DB266352 uterus .k 92 to 661 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB054783 testis .k 93 to 657 2 to 567   capped   566/566
(100 %)
6 diff
(99.0 %id)
DA960060 Spleen .k 94 to 647 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BY797171 eye .k 102 to 699 1 to 598       598/598
(100 %)
0 diff
(100 %id)
DA304748 hippocampus .k 108 to 687 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA199038 brain .k 109 to 667 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA264323 caudate nucleus .k 109 to 662 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CN408775 embryonic stem cells, cell lines H1, H7, andH9 .k 116 to 500 42 to 426       385/426
(90 %)
6 diff
(98.6 %id)
CX763106 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .k 120 to 772 1 to 653     Submitted on the opposite strand 653/852
(76 %)
8 diff
(99.1 %id)
DA738687   .k 142 to 695 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB037946 testis .k 147 to 723 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CN408779 embryonic stem cells, cell lines H1, H7, andH9 .k 150 to 843 1 to 694 exact     694/694
(100 %)
0 diff
(100 %id)
AW299455 Kidney .k 226 to 870 683 to 38       646/683
(94 %)
7 diff
(99.0 %id)
DB110901 thymus .k 262 to 828 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
AA411285 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 301 to 764 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
BM786552 Ascites, stomach .k 302 to 859 1 to 558       558/558
(100 %)
0 diff
(100 %id)
FN112002 breast carcinoma .k 371 to 454 84 to 1     Submitted on the opposite strand 84/84
(100 %)
0 diff
(100 %id)
AI379335 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 398 to 762 361 to 1       361/379
(95 %)
12 diff
(96.9 %id)
AI653325 pooled germ cell tumors .k 422 to 898 479 to 3       477/479
(99 %)
0 diff
(100 %id)
AI341113 pooled germ cell tumors .k 424 to 898 477 to 3       475/477
(99 %)
0 diff
(100 %id)
AI203072 pooled germ cell tumors .k 512 to 900 385 to 2       384/389
(98 %)
5 diff
(98.8 %id)
DA071844 cerebellum .k 660 to 1235 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA100084 cerebellum .k 685 to 1222 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
AW866764 stomach_normal .k 714 to 1095 8 to 389       382/389
(98 %)
6 diff
(98.5 %id)
DA045048 bladder .k 803 to 1371 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA096185 cerebellum .k 937 to 1481 2 to 546   capped   545/546
(99 %)
1 diff
(99.9 %id)
AA363919 pineal body .k 962 to 1232 1 to 271       271/274
(98 %)
1 diff
(99.7 %id)
BG621428 placenta .k 1114 to 1782 1 to 671       671/722
(92 %)
5 diff
(99.4 %id)
CB054813 brain, glioblastoma (pooled) .k 1897 to 2520 650 to 27   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 624/624
(100 %)
0 diff
(100 %id)
DB353266   .k 2010 to 2520 513 to 1       513/549
(93 %)
12 diff
(97.9 %id)
DB332449 Spleen .k 2022 to 2520 501 to 1       501/501
(100 %)
9 diff
(98.3 %id)
AA226914 brain, neuroepithelial cells .k 2148 to 2520 373 to 1       373/373
(100 %)
0 diff
(100 %id)
BM722049 eye, fetal eye .k 2562 to 2959 1 to 398   tiling clone, Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 398/399
(99 %)
1 diff
(99.8 %id)
BM678635 eye, fetal eye .k 3477 to 4185 725 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 707/712
(99 %)
3 diff
(99.6 %id)
AU149732   .k 3597 to 4185 594 to 1       594/594
(100 %)
11 diff
(98.2 %id)
AA593861 colon, colon tumor .l 1 to 454 1 to 454   tiling clone, Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
BF825470 head_normal .l 233 to 571 414 to 70 N15Y H34L L35P I36N T37H ... tiling clone, Submitted on the opposite strand 345/414
(83 %)
5 diff
(98.8 %id)
DA695269   .l 521 to 984 2 to 468   tiling clone, capped   467/467
(100 %)
4 diff
(99.2 %id)
DA460770 tongue, tumor tissue .l 738 to 1296 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DB314541 tongue, tumor tissue .l 1962 to 2536 575 to 1   tiling clone,   575/575
(100 %)
0 diff
(100 %id)
C19073 placenta .m-u 1 to 195 15 to 217       203/218
(93 %)
23 diff
(89.5 %id)
D58692   .m-u 1 to 420 1 to 420   tiling clone,   420/421
(99 %)
6 diff
(98.6 %id)
AW179326 stomach .m-u 135 to 348 214 to 1       214/214
(100 %)
2 diff
(99.1 %id)
DB568780 hypothalamus .m-u 225 to 722 1 to 498     Submitted on the opposite strand 498/500
(99 %)
1 diff
(99.8 %id)
AI089445 uterus .m-u 227 to 724 530 to 33   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 498/498
(100 %)
5 diff
(99.0 %id)
AJ710926 heart .m-u 232 to 722 19 to 509       491/520
(94 %)
1 diff
(99.9 %id)
AA454474 ovarian tumor, ovary .m-u 232 to 715 35 to 524       490/533
(91 %)
21 diff
(96.1 %id)
CN408776 embryonic stem cells, DMSO-treated H9 cellline .m-u 236 to 724 1 to 489   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 489/489
(100 %)
0 diff
(100 %id)
AW002180 thymus, pooled .m-u 239 to 726 488 to 3       486/488
(99 %)
0 diff
(100 %id)
AA770397   .m-u 241 to 726 491 to 2       490/508
(96 %)
0 diff
(100 %id)
AI089220 uterus .m-u 245 to 724 512 to 33   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 480/480
(100 %)
4 diff
(99.2 %id)
AI127957 uterus .m-u 248 to 724 504 to 28   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 477/477
(100 %)
6 diff
(98.8 %id)
BG104819 adrenal cortex carcinoma, cell line, adrenal gland .m-u 251 to 724 1 to 468   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 468/468
(100 %)
7 diff
(98.6 %id)
AI370807   .m-u 265 to 726 464 to 3       462/464
(99 %)
0 diff
(100 %id)
BE714394 head_neck .m-u 275 to 672 35 to 433       399/433
(92 %)
6 diff
(98.7 %id)
DB526839 testis .m-u 277 to 722 1 to 446     Submitted on the opposite strand 446/448
(99 %)
1 diff
(99.8 %id)
BP292494 lung .m-u 279 to 858 1 to 581   tiling clone,   581/581
(100 %)
6 diff
(99.0 %id)
BQ325183 colon_ins .m-u 285 to 643 25 to 382       358/382
(93 %)
6 diff
(98.5 %id)
DB513409 testis .m-u 291 to 724 1 to 433     Submitted on the opposite strand 433/433
(100 %)
2 diff
(99.6 %id)
DB512321 testis .m-u 296 to 722 1 to 428     Submitted on the opposite strand 428/430
(99 %)
3 diff
(99.4 %id)
AI242989 pooled .m-u 322 to 723 396 to 1       396/398
(99 %)
12 diff
(97.0 %id)
H68990 liver and spleen .m-u 367 to 724 363 to 1       363/363
(100 %)
7 diff
(98.1 %id)
AI050052   .m-u 403 to 791 401 to 13   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 389/389
(100 %)
0 diff
(100 %id)
AI864325 pooled .m-u 405 to 726 327 to 6       322/352
(91 %)
0 diff
(100 %id)
AA641155 invasive tumor (cell line), Prostate .m-u 434 to 722 297 to 1       297/297
(100 %)
31 diff
(89.6 %id)
D57680   .m-u 451 to 724 1 to 273       273/273
(100 %)
3 diff
(99.0 %id)
FN167166 breast carcinoma .m-u 615 to 720 1 to 102       102/107
(95 %)
5 diff
(95.4 %id)
AA373148 lung .m-u 1504 to 1790 1 to 287   tiling clone,   287/287
(100 %)
0 diff
(100 %id)
BP422227 small intestine .m-u 1692 to 2200 1 to 509 exact tiling clone, Submitted on the opposite strand 509/509
(100 %)
0 diff
(100 %id)
AI659426 Prostate .m-u 1784 to 2337 554 to 1 L29R Q34R K35Q N40S     554/554
(100 %)
6 diff
(99.0 %id)
BE676699 B-cell, chronic lymphotic leukemia .m-u 1796 to 2335 556 to 17 exact AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 540/540
(100 %)
0 diff
(100 %id)
AW008437 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .m-u 1864 to 2338 475 to 1 exact tiling clone,   475/475
(100 %)
0 diff
(100 %id)
AA918905 Kidney .m-u 1892 to 2335 444 to 1 exact     444/444
(100 %)
1 diff
(99.8 %id)
BX093372 serous papillary carcinoma, high grade, 2pooled tumors, uterus .m-u 1905 to 2335 445 to 15 exact AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 431/431
(100 %)
0 diff
(100 %id)
AI291681 placenta .m-u 1922 to 2338 422 to 6 exact     417/422
(98 %)
0 diff
(100 %id)
AI080515 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .m-u 1928 to 2335 408 to 1       408/408
(100 %)
0 diff
(100 %id)
AA953009 pooled .m-u 1941 to 2335 395 to 1       395/395
(100 %)
0 diff
(100 %id)
DB512961 testis .m-u 2058 to 2335 1 to 280     Submitted on the opposite strand 280/280
(100 %)
11 diff
(96.1 %id)
AI289636 serous papillary carcinoma, high grade, 2pooled tumors, uterus .m-u 2078 to 2336 258 to 1       258/260
(99 %)
6 diff
(97.7 %id)
AK130250 Prostate .n-u 1 to 2193 1 to 2189 exact tiling clone, available from FLJ,   2189/2189
(100 %)
7 diff
(99.7 %id)
AW901137 nervous_normal .n-u 17 to 304 1 to 287       287/287
(100 %)
2 diff
(99.4 %id)
BM726895 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n-u 1546 to 2193 1 to 643   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 643/643
(100 %)
5 diff
(99.3 %id)
DB128494 thymus .o 1 to 573 2 to 575   tiling clone, capped   574/574
(100 %)
1 diff
(99.9 %id)
DA717685   .o 24 to 582 2 to 564   tiling clone, capped   563/563
(100 %)
7 diff
(98.8 %id)
BP317813 pericardium .o 542 to 1114 1 to 578   tiling clone,   578/582
(99 %)
10 diff
(98.3 %id)
BX281417 pooled .o 1104 to 1613 2 to 511   tiling clone,   510/511
(99 %)
5 diff
(99.1 %id)
BM746106 stomach .o 1301 to 1899 1 to 598   tiling clone,   598/598
(100 %)
3 diff
(99.5 %id)
BM746948 stomach .o 1301 to 1835 1 to 535   tiling clone,   535/535
(100 %)
1 diff
(99.9 %id)
AI032944 liver and spleen .p 1 to 336 335 to 1 exact tiling clone,   335/346
(96 %)
0 diff
(100 %id)
DA246653 brain .p 10 to 611 2 to 603 exact tiling clone, to resequence, capped   602/602
(100 %)
11 diff
(98.2 %id)
DB306149 brain .p 1280 to 1810 531 to 1   tiling clone, to resequence,   531/531
(100 %)
0 diff
(100 %id)
DB028011 testis .q 1 to 536 10 to 548   tiling clone, capped   547/547
(100 %)
3 diff
(99.5 %id)
AU279608   .q 14 to 584 1 to 571   tiling clone,   571/571
(100 %)
0 diff
(100 %id)
DA220105 brain .q 43 to 607 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA659842   .q 63 to 622 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AA375076 lung .q 94 to 377 1 to 286       286/286
(100 %)
4 diff
(98.7 %id)
AW956192   .q 95 to 742 1 to 642 C102A G104D F106* tiling clone,   642/726
(88 %)
12 diff
(98.4 %id)
CN281649 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .r-u 1 to 711 1 to 712 exact tiling clone,   712/712
(100 %)
2 diff
(99.8 %id)
BU177564 bone marrow, from acute myelogenous leukemia .r-u 72 to 728 1 to 658 N3S tiling clone,   658/692
(95 %)
7 diff
(99.0 %id)
BF243768 bone marrow, from acute myelogenous leukemia .r-u 74 to 723 1 to 648 L2* tiling clone,   648/677
(95 %)
21 diff
(96.9 %id)
BF590142 pooled .r-u 261 to 718 464 to 7 exact     458/464
(98 %)
0 diff
(100 %id)
DB154184 thymus .s 1 to 601 2 to 602 F13L tiling clone, capped   601/601
(100 %)
1 diff
(99.9 %id)
DA242149 brain .t 1 to 585 4 to 588 exact tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
DA796785 brain .u 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
AA558488 germ cell tumor .va-u 1 to 538 542 to -4 exact tiling clone,   542/542
(100 %)
4 diff
(99.3 %id)
AW360955 colon Gene NR2C1, variant not shown         This clone was ignored    
AW604340 colon Gene NR2C1, variant not shown         This clone was ignored    
BX414616 thymus Gene NR2C1, variant not shown         This clone was ignored    
BX414617 thymus Gene NR2C1, variant not shown         This clone was ignored    
GD138279   Gene NR2C1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AA457332   Gene NR2C1, variant not shown         Suspected internal deletion, this clone was ignored    
BE856797 pooled Gene NR2C1, variant not shown         This clone was ignored    
BF223014 pooled germ cell tumors Gene NR2C1, variant not shown         Suspected internal deletion, this clone was ignored    
BU853564.
matches multiple genes
testis Gene gloglo, variant not shown         This clone was ignored, also hits gene gloglo    
BU853564.
matches multiple genes
testis Gene NR2C1, variant not shown         This clone was ignored, also hits gene gloglo    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u, .o, .p, .q, .r-u, .s, .t, .u, .va-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI