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Gene NR1D2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
267 supporting clones for gene NR1D2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK301925 testis .a 1 to 1981 1 to 1981 L425M tiling clone,   1981/1981
(100 %)
1 diff
(100.0 %id)
NM_001145425.1   .a 1 to 5056 1 to 5056 L425M RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 5056/5056
(100 %)
1 diff
(100.0 %id)
DC396179 testis .a 1 to 573 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DR004486 placenta .b 1 to 659 1 to 659   tiling clone,   659/659
(100 %)
3 diff
(99.6 %id)
NM_005126.4   .b 6 to 5263 1 to 5258 L386M RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 5258/5258
(100 %)
1 diff
(100.0 %id)
D16815   .b 20 to 2166 1 to 2147 L386M     2147/2147
(100 %)
8 diff
(99.7 %id)
CB960493 Human Placenta, placenta .b 35 to 764 28 to 764       737/837
(88 %)
13 diff
(98.5 %id)
CB959946 Human Placenta, placenta .b 36 to 745 29 to 743       715/769
(92 %)
11 diff
(98.6 %id)
CD109840 Human Placenta, placenta .b 36 to 740 29 to 736       708/799
(88 %)
18 diff
(97.8 %id)
DB454759.
matches multiple genes
testis .b 38 to 511 1 to 474     also hits gene chujawbo 474/474
(100 %)
1 diff
(99.8 %id)
BI551531 brain, hippocampus .b 53 to 543 1 to 510       510/744
(68 %)
31 diff
(95.9 %id)
BC045613 Brain, hippocampus .b 61 to 4390 4 to 4333 P21H Q282K P288R L386M tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4330/4330
(100 %)
8 diff
(99.9 %id)
TI_44171121   .b 61 to 543 125 to 626   AAA   502/850
(59 %)
14 diff
(98.4 %id)
CR602304 Neuroblastoma Cot 50-normalized .b 76 to 2151 1 to 2076 exact tiling clone,   2076/2076
(100 %)
0 diff
(100 %id)
AL529953 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 76 to 1135 1 to 1051       1051/1132
(92 %)
19 diff
(98.4 %id)
CV570121 cornea, eye .b 95 to 294 1 to 203       203/203
(100 %)
2 diff
(99.1 %id)
BG037160 testis .b 121 to 820 8 to 710       703/730
(96 %)
24 diff
(96.8 %id)
DA118156 cerebellum .b 272 to 821 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AA428473   .b 306 to 771 6 to 471       466/471
(98 %)
8 diff
(98.4 %id)
DR004087 Liver .b 306 to 995 1 to 690       690/690
(100 %)
5 diff
(99.3 %id)
AA401262   .b 314 to 757 17 to 460       444/460
(96 %)
9 diff
(98.1 %id)
BF802576 colon_ins .b 324 to 736 422 to 10     Submitted on the opposite strand 413/425
(97 %)
0 diff
(100 %id)
TI_1948230882   .b 324 to 1272 134 to 1090       957/1352
(70 %)
51 diff
(96.3 %id)
TI_1948230883   .b 324 to 1219 132 to 1036       905/1275
(70 %)
27 diff
(97.9 %id)
TI_1948231135   .b 324 to 1407 127 to 1212       1086/1450
(74 %)
83 diff
(94.3 %id)
TI_1948231136   .b 324 to 1123 125 to 933       809/1330
(60 %)
30 diff
(97.8 %id)
TI_1948231377   .b 324 to 1152 123 to 948       826/1354
(61 %)
20 diff
(98.6 %id)
TI_1948231378   .b 324 to 1400 129 to 1211       1083/1212
(89 %)
47 diff
(96.2 %id)
TI_1948231628   .b 324 to 1256 130 to 1075       946/1472
(64 %)
45 diff
(97.0 %id)
TI_1948231629   .b 324 to 1219 121 to 1023       903/1258
(71 %)
20 diff
(98.5 %id)
AB307693   .b 325 to 2064 1 to 1740 S89N N332X L386M     1740/1740
(100 %)
3 diff
(99.9 %id)
CR457434   .b 325 to 2064 1 to 1740 T51I L386M     1740/1740
(100 %)
2 diff
(99.9 %id)
EL736924 mixed .b 325 to 971 1 to 644       644/644
(100 %)
3 diff
(99.6 %id)
L31785 peripheral blood lymphocytes .b 327 to 2341 1 to 2017       2014/2017
(99 %)
14 diff
(99.4 %id)
AL708523 human skeletal muscle .b 330 to 942 1 to 613       613/613
(100 %)
0 diff
(100 %id)
BX371468 Neuroblastoma Cot 50-normalized .b 339 to 1286 954 to 1       954/960
(99 %)
52 diff
(94.6 %id)
AA373868 lung .b 426 to 762 1 to 338       338/338
(100 %)
3 diff
(99.2 %id)
DA022352   .b 586 to 1157 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA247815 brain .b 639 to 1232 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
BE886120 leiomyosarcoma, uterus .b 700 to 1353 1 to 653       653/655
(99 %)
17 diff
(97.5 %id)
DA663923   .b 830 to 1395 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA212504 brain .b 860 to 1407 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
CB988505 Human Placenta, placenta .b 866 to 1576 15 to 732       718/800
(89 %)
20 diff
(97.5 %id)
CD109502 Human Placenta, placenta .b 866 to 1472 15 to 624       610/772
(79 %)
7 diff
(99.1 %id)
DA815725   .b 875 to 1450 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BP202388 amygdala .b 878 to 1460 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
AK293273   .b 902 to 2554 1 to 1653       1653/1653
(100 %)
2 diff
(99.9 %id)
DC299724   .b 902 to 1478 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DA120632 cerebellum .b 1034 to 1559 2 to 528   capped   527/527
(100 %)
2 diff
(99.7 %id)
BP245612 Kidney .b 1036 to 1617 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DA109755 cerebellum .b 1041 to 1586 2 to 548   capped   547/551
(99 %)
4 diff
(99.3 %id)
AL563603 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 1050 to 2151 1093 to 1       1093/1136
(96 %)
36 diff
(96.9 %id)
BP249306 Kidney .b 1136 to 1718 2 to 583       582/583
(99 %)
7 diff
(98.8 %id)
DA216717 brain .b 1149 to 1696 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BM479352 eye, retinoblastoma .b 1179 to 2182 1 to 1011       1011/1028
(98 %)
31 diff
(97.0 %id)
DA325235 hippocampus .b 1205 to 1671 2 to 468   capped   467/467
(100 %)
1 diff
(99.8 %id)
EH348509   .b 1324 to 1395 1 to 72       72/72
(100 %)
0 diff
(100 %id)
DA242760 brain .b 1389 to 1952 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
BP197388 adrenal gland .b 1394 to 1975 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BQ320961 colon .b 1398 to 1935 12 to 551       540/551
(98 %)
20 diff
(96.4 %id)
DA324270 hippocampus .b 1429 to 1976 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DA111244 cerebellum .b 1430 to 1986 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA334387 hippocampus .b 1436 to 2010 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DR005705 Prostate .b 1467 to 2078 1 to 610       610/611
(99 %)
7 diff
(98.9 %id)
DB275433 uterus .b 1537 to 2106 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BQ430958 embryonal carcinoma, cell line, testis .b 1608 to 2437 1 to 839       839/902
(93 %)
15 diff
(98.4 %id)
DA274602 corpus callosum .b 1612 to 2182 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
DA216197 brain .b 1620 to 2173 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA216204 brain .b 1620 to 2121 2 to 504   capped   503/503
(100 %)
1 diff
(99.9 %id)
N57167 placenta .b 1621 to 2151 1 to 543       543/546
(99 %)
21 diff
(96.2 %id)
BM723259 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1664 to 2344 1 to 680     Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 680/680
(100 %)
2 diff
(99.8 %id)
ES310727 scalp interfollicular dermis, skin .b 1674 to 2162 1 to 489       489/489
(100 %)
5 diff
(99.0 %id)
DA994978 synovial membrane tissue from rheumatioidarthritis .b 1683 to 2235 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA231525 brain .b 1714 to 2258 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
CB119016 Liver .b 1725 to 2331 1 to 606       606/606
(100 %)
1 diff
(99.9 %id)
BF695369 muscle (skeletal) .b 1737 to 2400 1 to 679       679/932
(72 %)
35 diff
(96.3 %id)
AI935028 pooled .b 1778 to 2206 430 to 2       429/430
(99 %)
0 diff
(100 %id)
BG399756 Kidney .b 1779 to 2486 1 to 699       699/832
(84 %)
12 diff
(98.6 %id)
DA412550 thalamus .b 1782 to 2191 2 to 411   capped   410/410
(100 %)
0 diff
(100 %id)
DA406452 thalamus .b 1790 to 2352 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BQ441272 testis .b 1816 to 2470 1 to 657       657/798
(82 %)
17 diff
(97.9 %id)
N41813 placenta .b 1836 to 2124 1 to 289       289/289
(100 %)
0 diff
(100 %id)
BM460536 leiomyosarcoma, uterus .b 1849 to 2812 1 to 967   tiling clone,   967/1054
(91 %)
32 diff
(97.0 %id)
BG203080   .b 1861 to 2641 1 to 778       778/778
(100 %)
23 diff
(97.1 %id)
H56408 pineal gland .b 1866 to 2248 10 to 405       396/421
(94 %)
14 diff
(96.7 %id)
BQ575954 Chondrosarcoma Grade II, Left Pelvis .b 1870 to 2196 345 to 19   AAA   327/336
(97 %)
0 diff
(100 %id)
W79353 heart .b 1994 to 2443 1 to 459       459/486
(94 %)
11 diff
(97.8 %id)
W76487 heart .b 2101 to 2522 1 to 424       424/424
(100 %)
2 diff
(99.6 %id)
BE778130 eye, retinoblastoma .b 2118 to 2833 1 to 717       717/985
(72 %)
27 diff
(97.3 %id)
BE929354 placenta_normal .b 2153 to 2402 267 to 21       247/267
(92 %)
0 diff
(100 %id)
R58411   .b 2154 to 2303 1 to 150       150/150
(100 %)
2 diff
(98.7 %id)
CK005324 brain/CNS, Human Brain - Frontal Cortex .b 2164 to 2797 1 to 634       634/636
(99 %)
3 diff
(99.6 %id)
N52672 multiple sclerosis lesions .b 2183 to 2366 1 to 184       184/184
(100 %)
1 diff
(99.5 %id)
BM727617 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2194 to 2827 1 to 634   fully sequenced,   634/634
(100 %)
0 diff
(100 %id)
FN142199 breast carcinoma .b 2216 to 2307 1 to 92       92/92
(100 %)
3 diff
(96.8 %id)
TI_159681474   .b 2217 to 3130 979 to 81   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 899/1019
(88 %)
27 diff
(97.4 %id)
EH358350   .b 2268 to 2334 1 to 67       67/67
(100 %)
0 diff
(100 %id)
AV652509 corresponding non cancerous liver tissue .b 2281 to 2694 1 to 414     Submitted on the opposite strand 414/414
(100 %)
2 diff
(99.6 %id)
AV652521 corresponding non cancerous liver tissue .b 2281 to 2639 1 to 359     Submitted on the opposite strand 359/371
(96 %)
15 diff
(96.0 %id)
DW427958 Liver .b 2284 to 2544 17 to 277       261/277
(94 %)
6 diff
(97.9 %id)
TI_154102629   .b 2356 to 3130 846 to 82   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 765/766
(99 %)
16 diff
(98.0 %id)
FN142196 breast carcinoma .b 2362 to 2464 102 to 1     Submitted on the opposite strand 102/111
(91 %)
1 diff
(99.1 %id)
DA302152 hippocampus .b 2404 to 2873 2 to 472   capped   471/471
(100 %)
1 diff
(99.8 %id)
DA137131 alzheimer cortex .b 2425 to 2946 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
BQ189049 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2433 to 3111 1 to 679       679/679
(100 %)
0 diff
(100 %id)
CA842022 Pancreas, Purified pancreatic islet .b 2440 to 2693 1 to 255   fully sequenced,   255/255
(100 %)
3 diff
(98.9 %id)
BQ440257 eye, retinoblastoma .b 2460 to 3352 1 to 897       897/903
(99 %)
10 diff
(98.9 %id)
BM726115 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2494 to 2788 1 to 294   fully sequenced,   294/294
(100 %)
0 diff
(100 %id)
CA445598 Chondrosarcoma, Left Pubic Bone .b 2522 to 3130 625 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 609/609
(100 %)
0 diff
(100 %id)
N32859 placenta .b 2537 to 3130 589 to 1       589/596
(98 %)
13 diff
(97.9 %id)
BX537786 Liver .b 2570 to 5260 1 to 2691   available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2691/2691
(100 %)
2 diff
(100.0 %id)
AW978238   .b 2595 to 3104 510 to 1     Submitted on the opposite strand 510/511
(99 %)
0 diff
(100 %id)
BM682263 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2598 to 3130 550 to 18   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 533/533
(100 %)
0 diff
(100 %id)
W72408 heart .b 2599 to 3131 540 to 1       540/543
(99 %)
9 diff
(98.4 %id)
BM068747 Islets of Langerhans, Pancreas .b 2601 to 3145 1 to 545       545/545
(100 %)
0 diff
(100 %id)
BQ012458 placenta .b 2614 to 3130 533 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 517/517
(100 %)
0 diff
(100 %id)
BE326316 carcinoid, lung .b 2624 to 3133 510 to 1       510/510
(100 %)
0 diff
(100 %id)
BE326398 carcinoid, lung .b 2627 to 3129 503 to 1       503/503
(100 %)
0 diff
(100 %id)
AI018688   .b 2636 to 3133 497 to 1       497/497
(100 %)
2 diff
(99.6 %id)
AI093344 uterus .b 2638 to 3128 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
AI803111 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2641 to 3128 488 to 1       488/488
(100 %)
0 diff
(100 %id)
CA841730 Pancreas, Purified pancreatic islet .b 2663 to 3129 467 to 1   fully sequenced,   467/467
(100 %)
0 diff
(100 %id)
AI203672   .b 2670 to 3133 464 to 1       464/464
(100 %)
0 diff
(100 %id)
AI271517 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2671 to 3128 459 to 1       459/459
(100 %)
2 diff
(99.6 %id)
AI302709 carcinoid, lung .b 2671 to 3133 463 to 1       463/463
(100 %)
3 diff
(99.4 %id)
AI348347 carcinoid, lung .b 2672 to 3133 461 to 1       461/461
(100 %)
2 diff
(99.6 %id)
BE884080 leiomyosarcoma, uterus .b 2672 to 3179 1 to 507       507/724
(70 %)
7 diff
(99.1 %id)
AA404236   .b 2677 to 3134 458 to 1       458/458
(100 %)
0 diff
(100 %id)
AI289033 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2689 to 3128 440 to 1       440/440
(100 %)
0 diff
(100 %id)
BG436480 placenta .b 2690 to 3396 1 to 712       712/713
(99 %)
32 diff
(95.6 %id)
AI288821 2 pooled tumors (clear cell type), Kidney .b 2721 to 3130 410 to 1       410/410
(100 %)
0 diff
(100 %id)
W74060 heart .b 2728 to 3130 409 to 1       409/410
(99 %)
6 diff
(98.6 %id)
N29745 placenta .b 2735 to 3128 395 to 1       395/395
(100 %)
1 diff
(99.8 %id)
AA425685   .b 2737 to 3130 394 to 1       394/394
(100 %)
0 diff
(100 %id)
BG104395 melanotic melanoma, skin .b 2742 to 2945 1 to 204       204/204
(100 %)
1 diff
(99.6 %id)
BP398395 pancreatic islet .b 2744 to 3130 1 to 387     Submitted on the opposite strand 387/387
(100 %)
0 diff
(100 %id)
AA806311 germinal center B cell .b 2745 to 3139 395 to 1       395/395
(100 %)
8 diff
(98.0 %id)
BC015929.
matches multiple genes
leiomyosarcoma, uterus, Uterus, leiomyosarcoma .b 2747 to 5260 1 to 2512   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base), also hits gene NEIL3 2512/2516
(99 %)
3 diff
(99.9 %id)
BF447584 sympathetic trunk .b 2758 to 3131 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
BM682548 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2758 to 3142 388 to 1   fully sequenced,   388/388
(100 %)
3 diff
(99.3 %id)
H56192 pineal gland .b 2764 to 3106 350 to 1       350/361
(96 %)
11 diff
(97.0 %id)
BE886265 leiomyosarcoma, uterus .b 2767 to 3399 1 to 629       629/642
(97 %)
6 diff
(99.1 %id)
N49742 multiple sclerosis lesions .b 2785 to 3131 357 to 1       357/359
(99 %)
18 diff
(95.0 %id)
DA032214   .b 2788 to 3361 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
AW339246 carcinoid, lung .b 2789 to 3130 343 to 1       343/343
(100 %)
3 diff
(99.2 %id)
BM681053 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2797 to 3146 350 to 1   fully sequenced,   350/350
(100 %)
2 diff
(99.5 %id)
DW413334 Liver .b 2799 to 3117 1 to 320       320/320
(100 %)
9 diff
(97.2 %id)
AW190638 adenocarcinoma, Pancreas .b 2805 to 3130 326 to 1       326/326
(100 %)
0 diff
(100 %id)
DB531161 hippocampus .b 2839 to 3130 1 to 293     Submitted on the opposite strand 293/293
(100 %)
15 diff
(94.9 %id)
FN113657 breast carcinoma .b 2853 to 2942 1 to 91       91/91
(100 %)
1 diff
(99.0 %id)
AW205422   .b 2854 to 3130 292 to 16   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 277/277
(100 %)
2 diff
(99.3 %id)
BM728378 eye, fetal eye .b 2896 to 3430 1 to 535       535/535
(100 %)
4 diff
(99.3 %id)
DB268994 uterus .b 2901 to 3471 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
FN077541 breast carcinoma .b 2928 to 3004 1 to 76       76/77
(98 %)
2 diff
(97.5 %id)
BX332726 Neuroblastoma Cot 25-normalized .b 2929 to 3896 1 to 961       961/961
(100 %)
14 diff
(98.6 %id)
Z21077   .b 2931 to 3121 191 to 1       191/191
(100 %)
2 diff
(99.0 %id)
DA714794   .b 2956 to 3493 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA142386 alzheimer cortex .b 3061 to 3608 2 to 547   capped   546/546
(100 %)
3 diff
(99.5 %id)
AA013283 eye, retina .b 3144 to 3395 1 to 255       255/279
(91 %)
6 diff
(97.9 %id)
BF352469 head_neck .b 3180 to 3360 186 to 6       181/186
(97 %)
0 diff
(100 %id)
CN371678 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 3213 to 3754 1 to 542       542/542
(100 %)
0 diff
(100 %id)
DA067156 cerebellum .b 3298 to 3876 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
BG571863 placenta .b 3298 to 3996 1 to 694       694/696
(99 %)
16 diff
(97.8 %id)
DA180102 amygdala .b 3306 to 3865 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BQ223808 melanotic melanoma, skin .b 3315 to 4165 1 to 857       857/862
(99 %)
10 diff
(98.9 %id)
DA356256 subthalamic nucleus .b 3323 to 3878 2 to 559   capped   558/558
(100 %)
3 diff
(99.5 %id)
DA163649 amygdala .b 3329 to 3890 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB185327 liver, tumor tissue .b 3330 to 3916 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DB165858 thyroid gland .b 3331 to 3979 46 to 695   capped   650/700
(92 %)
2 diff
(99.8 %id)
DA569492 whole embryo, mainly head .b 3426 to 4270 2 to 844   capped   843/854
(98 %)
5 diff
(99.5 %id)
BQ214939 melanotic melanoma, skin .b 3465 to 4331 1 to 866       866/866
(100 %)
4 diff
(99.6 %id)
BX507713   .b 3542 to 4137 1 to 596       596/596
(100 %)
1 diff
(99.9 %id)
BM723090 eye, fetal eye .b 3569 to 4140 1 to 572     Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 572/572
(100 %)
1 diff
(99.9 %id)
DA812058 ovary, tumor tissue .b 3581 to 4352 2 to 776   capped   775/775
(100 %)
7 diff
(99.1 %id)
BG287917 bladder, transitional cell papilloma, cell line .b 3617 to 4262 1 to 641       641/934
(68 %)
11 diff
(98.9 %id)
BX332725 Neuroblastoma Cot 25-normalized .b 4203 to 5207 1007 to 1       1007/1007
(100 %)
7 diff
(99.4 %id)
BM677622 eye, fetal eye .b 4550 to 5260 729 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 711/711
(100 %)
0 diff
(100 %id)
BU742899 eye, fetal eye .b 4576 to 5261 706 to 21       686/706
(97 %)
0 diff
(100 %id)
DB356135 whole embryo, mainly head .b 4703 to 5260 551 to 1       551/551
(100 %)
11 diff
(98.1 %id)
DB381686 thyroid gland .b 4715 to 5260 538 to 1       538/538
(100 %)
20 diff
(96.3 %id)
DB295816   .b 4730 to 5260 531 to 1       531/531
(100 %)
0 diff
(100 %id)
DB371342 ovary, tumor tissue .b 4800 to 5260 461 to 1       461/462
(99 %)
7 diff
(98.5 %id)
AA013256 eye, retina .b 4882 to 5261 388 to 1   tiling clone,   388/393
(98 %)
7 diff
(98.3 %id)
BX354204 Neuroblastoma Cot 25-normalized .c 1 to 951 1 to 950   tiling clone,   950/950
(100 %)
7 diff
(99.3 %id)
BC070035 testis .c 72 to 4446 1 to 4373 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 4373/4373
(100 %)
8 diff
(99.9 %id)
TI_1948231379   .c 383 to 1503 1258 to 128       971/1371
(70 %)
48 diff
(96.5 %id)
TI_1948231137   .c 561 to 1503 1068 to 128       941/1320
(71 %)
28 diff
(97.9 %id)
TI_1948230884   .c 645 to 1503 988 to 128       861/1300
(66 %)
15 diff
(98.9 %id)
TI_1948231630   .c 648 to 1503 988 to 127       862/1426
(60 %)
19 diff
(98.7 %id)
FN081698 breast carcinoma .c 3721 to 3828 109 to 1     Submitted on the opposite strand 109/110
(99 %)
1 diff
(99.1 %id)
DA512277 brain .c 3728 to 4268 2 to 538   capped   537/537
(100 %)
2 diff
(99.7 %id)
BG111416 Bone, osteosarcoma, cell line .c 3804 to 4500 1 to 697       697/746
(93 %)
39 diff
(94.8 %id)
BF038493 adenocarcinoma, ovary .c 3810 to 4573 1 to 757       757/936
(80 %)
30 diff
(96.8 %id)
BF671078 muscle (skeletal) .c 3846 to 4531 1 to 676       676/843
(80 %)
24 diff
(97.2 %id)
BF239679 bone marrow, from chronic myelogenous leukemia .c 3855 to 4534 1 to 680       680/742
(91 %)
64 diff
(91.4 %id)
CD244153 testis .c 3907 to 4532 27 to 660       634/971
(65 %)
6 diff
(99.4 %id)
BG286768 bladder, transitional cell papilloma, cell line .c 3942 to 4597 59 to 709       651/930
(70 %)
19 diff
(98.0 %id)
CA389812 eye, RPE/choroid .c 3995 to 4620 1 to 626       626/626
(100 %)
2 diff
(99.7 %id)
BG113352 Bone, osteosarcoma, cell line .c 4003 to 4707 1 to 698       698/959
(72 %)
38 diff
(96.1 %id)
BG401105 Kidney .c 4019 to 4702 1 to 682       682/858
(79 %)
10 diff
(98.9 %id)
BF381598 brain, primitive neuroectoderm .c 4026 to 4600 1 to 586       586/604
(97 %)
30 diff
(95.1 %id)
BG620156 placenta .c 4100 to 4773 1 to 679   tiling clone,   679/790
(85 %)
5 diff
(99.4 %id)
BG112138 Bone, osteosarcoma, cell line .c 4108 to 4779 1 to 671       671/882
(76 %)
21 diff
(97.7 %id)
BG104542 adrenal cortex carcinoma, cell line, adrenal gland .c 4128 to 4821 1 to 687       687/968
(70 %)
19 diff
(98.1 %id)
BM478460 eye, retinoblastoma .c 4132 to 5052 13 to 936       924/1093
(84 %)
46 diff
(95.8 %id)
AW968436   .c 4141 to 4751 1 to 610       610/610
(100 %)
3 diff
(99.6 %id)
BE566517 bladder, carcinoma, cell line .c 4150 to 4812 1 to 680       680/798
(85 %)
42 diff
(94.8 %id)
BF977580 melanotic melanoma, high MDR, skin .c 4165 to 4761 1 to 599       599/599
(100 %)
13 diff
(97.9 %id)
AA299283 uterus .c 4182 to 4513 1 to 336       336/337
(99 %)
7 diff
(98.0 %id)
AA374069 lung .c 4186 to 4410 1 to 225       225/225
(100 %)
0 diff
(100 %id)
AW963678   .c 4187 to 4767 1 to 589       589/589
(100 %)
14 diff
(97.7 %id)
CV570541 cornea, eye .c 4210 to 4730 1 to 521       521/521
(100 %)
0 diff
(100 %id)
DA511953 brain .c 4239 to 4782 2 to 545   fully sequenced, capped   544/544
(100 %)
1 diff
(99.9 %id)
D60581   .c 4243 to 4524 1 to 281       281/281
(100 %)
14 diff
(95.1 %id)
D61135   .c 4243 to 4560 1 to 315       315/315
(100 %)
3 diff
(99.1 %id)
BF243929 bone marrow, from acute myelogenous leukemia .c 4243 to 4799 1 to 567       567/816
(69 %)
22 diff
(97.4 %id)
BX354203 Neuroblastoma Cot 25-normalized .c 4281 to 5290 1008 to 1       1008/1008
(100 %)
10 diff
(99.1 %id)
BF208803 bladder, carcinoma, cell line .c 4295 to 4773 1 to 482       482/483
(99 %)
12 diff
(97.6 %id)
AW379368 head_neck .c 4328 to 4784 30 to 484       455/502
(90 %)
6 diff
(98.9 %id)
BF691975 melanotic melanoma, high MDR, skin .c 4375 to 5122 1 to 757       757/874
(86 %)
55 diff
(93.8 %id)
DR422538 eye, Pterygium .c 4433 to 5108 13 to 688       676/688
(98 %)
6 diff
(99.2 %id)
AV727239 hypothalamus .c 4505 to 5115 13 to 619       607/619
(98 %)
6 diff
(99.1 %id)
FN165240 breast carcinoma .c 4508 to 4599 1 to 92       92/92
(100 %)
2 diff
(97.9 %id)
BI493576 cochlea, ear .c 4541 to 4851 1 to 311   fully sequenced, Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 311/311
(100 %)
5 diff
(98.4 %id)
CB124794 Liver .c 4550 to 5059 1 to 510       510/510
(100 %)
1 diff
(99.9 %id)
CB133582 Liver .c 4550 to 4997 1 to 448       448/448
(100 %)
2 diff
(99.6 %id)
CB137091 Liver .c 4550 to 5045 1 to 496       496/496
(100 %)
1 diff
(99.8 %id)
CB134032 Liver .c 4550 to 5058 1 to 509       509/509
(100 %)
1 diff
(99.9 %id)
CB133245 Liver .c 4550 to 4976 1 to 428       428/428
(100 %)
1 diff
(99.8 %id)
CB133671 Liver .c 4550 to 4906 1 to 357       357/357
(100 %)
0 diff
(100 %id)
CB137232 Liver .c 4550 to 4904 1 to 355       355/355
(100 %)
0 diff
(100 %id)
CA312643 Human Lung Epithelial cells, lung .c 4569 to 5323 769 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 754/754
(100 %)
3 diff
(99.7 %id)
AV753009 Pituitary .c 4579 to 5088 1 to 507   tiling clone,   507/518
(97 %)
5 diff
(99.1 %id)
H45879 breast .c 4583 to 4945 1 to 366       366/366
(100 %)
3 diff
(99.2 %id)
CB133285 Liver .c 4600 to 5010 1 to 411       411/411
(100 %)
1 diff
(99.8 %id)
CA412377 Chondrosarcoma Grade II, Left Pelvis .c 4619 to 5323 723 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 705/705
(100 %)
1 diff
(99.9 %id)
BM992280 Bone, Subchondral Bone .c 4693 to 5320 646 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 628/632
(99 %)
4 diff
(99.4 %id)
AI761621 pooled .c 4725 to 5323 610 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 599/599
(100 %)
1 diff
(99.9 %id)
AW849831 colon .c 4732 to 4930 1 to 199       199/203
(98 %)
1 diff
(99.6 %id)
DB316370 brain .c 4746 to 5320 575 to 1       575/586
(98 %)
0 diff
(100 %id)
DB316351 brain .c 4752 to 5320 570 to 1   fully sequenced,   570/570
(100 %)
1 diff
(99.9 %id)
CK904599 Islets of Langerhans, Pancreas .c 4757 to 5322 573 to 8       566/573
(98 %)
0 diff
(100 %id)
AW382132 head_neck .c 4763 to 5259 27 to 523       497/530
(93 %)
12 diff
(97.8 %id)
CN371679 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 4806 to 5084 1 to 279       279/279
(100 %)
0 diff
(100 %id)
AA948097 pooled .c 4819 to 5323 516 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 505/505
(100 %)
0 diff
(100 %id)
BI493575 cochlea, ear .c 4821 to 5320 517 to 18   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 500/500
(100 %)
2 diff
(99.6 %id)
BE501571 malignant melanoma, metastatic to lymphnode, skin .c 4824 to 5321 498 to 1       498/498
(100 %)
0 diff
(100 %id)
BE217729 carcinoid, lung .c 4827 to 5323 497 to 1       497/497
(100 %)
0 diff
(100 %id)
BM054735 Islets of Langerhans, Pancreas .c 4841 to 5322 489 to 8       482/489
(98 %)
0 diff
(100 %id)
CB240982 Human Lung Epithelial cells, lung .c 4843 to 5320 496 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 478/487
(98 %)
1 diff
(99.8 %id)
AA176142   .c 4851 to 5320 1 to 479   fully sequenced,   479/479
(100 %)
17 diff
(96.5 %id)
D60580   .c 4852 to 5320 468 to 1       468/468
(100 %)
2 diff
(99.6 %id)
AI498705 Kidney .c 4852 to 5323 494 to 23   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 472/472
(100 %)
1 diff
(99.8 %id)
AW780263 colon, moderately-differentiated adenocarcinoma .c 4860 to 5323 467 to 4       464/467
(99 %)
0 diff
(100 %id)
AI610455 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 4861 to 5320 460 to 1       460/460
(100 %)
0 diff
(100 %id)
BE501581 malignant melanoma, metastatic to lymphnode, skin .c 4867 to 5321 455 to 1       455/455
(100 %)
0 diff
(100 %id)
BX113865 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 4874 to 5320 461 to 15   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 447/447
(100 %)
0 diff
(100 %id)
AI375425 brain, glioblastoma (pooled) .c 4886 to 5316 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AW026327 brain, glioblastoma (pooled) .c 4886 to 5316 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AA708458 uterus .c 4916 to 5322 411 to 5       407/411
(99 %)
0 diff
(100 %id)
AI862186 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 4930 to 5322 393 to 1       393/393
(100 %)
0 diff
(100 %id)
AI418049 brain, glioblastoma (pooled) .c 4949 to 5316 368 to 1       368/368
(100 %)
0 diff
(100 %id)
AI249324 adenocarcinoma, Pancreas .c 4961 to 5320 375 to 16   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 360/360
(100 %)
7 diff
(98.1 %id)
AI952370 brain, three pooled meningiomas .c 4962 to 5323 362 to 1       362/362
(100 %)
0 diff
(100 %id)
AW473152 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 4972 to 5323 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AI123056 pooled .c 4974 to 5322 353 to 5       349/353
(98 %)
0 diff
(100 %id)
AI868527 pooled .c 5015 to 5323 316 to 8       309/319
(96 %)
0 diff
(100 %id)
AW885388 ovary .c 5026 to 5255 1 to 231       231/236
(97 %)
6 diff
(97.5 %id)
AA458841 germinal center B cell .c 5037 to 5320 295 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 284/284
(100 %)
0 diff
(100 %id)
AW016051   .c 5039 to 5315 301 to 23   AAA   279/285
(97 %)
0 diff
(100 %id)
BQ330020 lung_tumor .c 5049 to 5227 1 to 180       180/180
(100 %)
5 diff
(97.3 %id)
AA176241   .c 5057 to 5321 266 to 1   fully sequenced,   266/266
(100 %)
1 diff
(99.7 %id)
C20597   .c 5110 to 5321 1 to 212       212/214
(99 %)
1 diff
(99.6 %id)
AB209091 brain .d 1 to 5084 1 to 5083 exact tiling clone,   5083/5083
(100 %)
4 diff
(100.0 %id)
AI366003 brain, oligodendroglioma .d 3212 to 3657 1 to 446     Submitted on the opposite strand 446/446
(100 %)
4 diff
(99.2 %id)
BU146846 dorsal root ganglia .e 1 to 521 1 to 520 N10I S11A S12L N13I S14L ... tiling clone,   883/890
(99 %)
24 diff
(97.4 %id)
CB994391 placenta, pre-eclamptic placenta .f 1 to 784 20 to 817 exact tiling clone,   798/848
(94 %)
32 diff
(96.3 %id)
AW950510   .g 1 to 635 9 to 645 exact tiling clone,   637/699
(91 %)
14 diff
(98.0 %id)
T28309 colon, embryo .g 3 to 275 12 to 284       273/284
(96 %)
11 diff
(96.2 %id)
CF139138 CNCAP(3)T-225 cell line, Prostate .g 384 to 860 8 to 484       477/484
(98 %)
6 diff
(98.8 %id)
TI_154169325   .g 384 to 880 80 to 576   tiling clone,   497/497
(100 %)
0 diff
(100 %id)
AW375779 colon .h-u 1 to 561 7 to 570 S2F C3P H4T S5V E6R ... tiling clone,   564/573
(98 %)
6 diff
(99.0 %id)
AW375775 colon .h-u 74 to 550 59 to 535   tiling clone,   477/535
(89 %)
8 diff
(98.6 %id)
DW466831 Liver .h-u 209 to 542 16 to 349   tiling clone,   334/349
(95 %)
6 diff
(98.3 %id)
DW431530 Liver .i-u 1 to 261 10 to 269   tiling clone,   260/269
(96 %)
6 diff
(97.8 %id)
DW428113 Liver .i-u 9 to 268 17 to 276 exact tiling clone,   260/276
(94 %)
4 diff
(98.6 %id)
CB270366 adipose Gene NR1D2, variant not shown         This clone was ignored    
CV572450 cornea, eye Gene NR1D2, variant not shown         Suspected internal deletion, this clone was ignored    
AK313464 hippocampus Gene NR1D2, variant not shown         Suspected internal deletion, this clone was ignored    
DC323455 brain Gene NR1D2, variant not shown         Suspected internal deletion, this clone was ignored    
DC332563 hippocampus Gene NR1D2, variant not shown         Suspected internal deletion, this clone was ignored    
DB309040 hippocampus Gene NR1D2, variant not shown              
DA319986 hippocampus Gene NR1D2, variant not shown       capped      
DB131706 thymus Gene NR1D2, variant not shown       capped      
DB344661 thymus Gene NR1D2, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI