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Gene NPC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
479 supporting clones for gene NPC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI458848 testis .a 1 to 506 3 to 517   tiling clone,   515/606
(84 %)
65 diff
(89.3 %id)
DC401176 testis .a 15 to 552 1 to 538       538/538
(100 %)
1 diff
(99.9 %id)
DC401633 testis .a 29 to 566 1 to 538   tiling clone,   538/538
(100 %)
1 diff
(99.9 %id)
DC333251 hippocampus .a 44 to 612 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DC337844 substantia nigra .a 61 to 608 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC323414 brain .a 67 to 639 1 to 573       573/574
(99 %)
1 diff
(99.9 %id)
DR159421 human embryonic stem cells differentiated toan early endodermal cell type .a 78 to 789 1 to 712   tiling clone,   712/712
(100 %)
2 diff
(99.8 %id)
DC335111 hippocampus .a 83 to 674 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
DC317844 amygdala .a 90 to 646 1 to 557       557/557
(100 %)
3 diff
(99.5 %id)
DC320711 brain .a 90 to 658 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
DC342196 thalamus .a 171 to 688 1 to 518       518/518
(100 %)
0 diff
(100 %id)
NM_000271.4   .a 359 to 5170 1 to 4812   RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 4812/4812
(100 %)
0 diff
(100 %id)
DC401088 testis .a 359 to 719 1 to 363       363/363
(100 %)
2 diff
(99.5 %id)
BP217319 corpus callosum .a 470 to 1051 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP278639   .a 470 to 1066 1 to 598       596/598
(99 %)
16 diff
(97.4 %id)
DA102234 cerebellum .a 471 to 1050 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA189128 amygdala .a 471 to 1059 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
DA195629 amygdala .a 471 to 1034 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA215771 brain .a 471 to 1007 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA247008 brain .a 471 to 1056 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA315785 hippocampus .a 471 to 1008 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA324335 hippocampus .a 471 to 1023 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA330589 hippocampus .a 471 to 1028 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA338737 hippocampus .a 471 to 1065 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DB068662 testis .a 471 to 1020 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB095278 testis .a 471 to 1041 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB236729 trachea .a 471 to 1049 2 to 584   capped   583/583
(100 %)
5 diff
(99.2 %id)
DB281906 uterus .a 471 to 1021 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA193809 amygdala .a 473 to 1044 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA319839 hippocampus .a 478 to 1033 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA335121 hippocampus .a 478 to 1045 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA390765 thalamus .a 478 to 1045 14 to 582   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA413995 thalamus .a 478 to 1033 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA313813 hippocampus .a 490 to 1038 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA377982 thalamus .a 490 to 1107 2 to 619   capped   618/618
(100 %)
0 diff
(100 %id)
DA317225 hippocampus .a 494 to 1025 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA184359 amygdala .a 495 to 1049 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA243840 brain .a 495 to 1093 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
DA315739 hippocampus .a 495 to 1059 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA320640 hippocampus .a 495 to 1057 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA325189 hippocampus .a 495 to 977 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DA390336 thalamus .a 495 to 1068 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB222616 trachea .a 495 to 1041 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA409336 thalamus .a 497 to 1046 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA807144 brain .a 501 to 1059 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AF002020   .a 510 to 5170 1 to 4663 M642I tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 4663/4663
(100 %)
5 diff
(99.9 %id)
DB037467 testis .a 513 to 1075 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA112366 cerebellum .a 514 to 1055 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA340121 hippocampus .a 514 to 1107 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
DA402704 thalamus .a 514 to 1039 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA862388 placenta .a 514 to 1071 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DB220856 trachea .a 515 to 977 2 to 464   capped   463/463
(100 %)
2 diff
(99.6 %id)
DB163264 thymus .a 518 to 1110 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
AL701653 human skeletal muscle .a 527 to 1073 1 to 547       547/547
(100 %)
9 diff
(98.4 %id)
DA417634 thalamus .a 530 to 1066 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA316931 hippocampus .a 531 to 885 189 to 543   capped   355/542
(65 %)
6 diff
(98.9 %id)
DB283185 uterus .a 531 to 1059 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
BC063302 Placenta, normal .a 536 to 5170 1 to 4635 S151G M642I available from MGC, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 4635/4635
(100 %)
5 diff
(99.9 %id)
CB987975 Human Placenta, placenta .a 536 to 1248 28 to 749       722/770
(93 %)
21 diff
(97.3 %id)
CA393863 eye, RPE/choroid .a 538 to 1077 1 to 540       540/540
(100 %)
3 diff
(99.5 %id)
BP282809 bone marrow .a 543 to 1126 1 to 585       585/585
(100 %)
7 diff
(98.9 %id)
DA188525 amygdala .a 544 to 1087 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA313178 hippocampus .a 544 to 1097 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA316910 hippocampus .a 544 to 1033 2 to 491   capped   490/490
(100 %)
2 diff
(99.6 %id)
DA758554   .a 544 to 1106 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA852347 placenta .a 544 to 1111 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB229848 trachea .a 544 to 1135 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DB235118 trachea .a 544 to 1094 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB243259 stomach, tumor tissue .a 544 to 1110 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB281243 uterus .a 544 to 1091 2 to 549   capped   548/549
(99 %)
2 diff
(99.7 %id)
DB240246 trachea .a 547 to 1127 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
BX481212   .a 553 to 971 22 to 440       419/440
(95 %)
6 diff
(98.7 %id)
DA106354 cerebellum .a 559 to 1128 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
CN354835 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 567 to 1289 1 to 725       725/726
(99 %)
5 diff
(99.4 %id)
AB209048 brain .a 598 to 5170 1 to 4573 H215R tiling clone,   4573/4573
(100 %)
1 diff
(100.0 %id)
DR005338 Prostate .a 602 to 1302 7 to 707       701/707
(99 %)
6 diff
(99.2 %id)
DA861307 placenta .a 609 to 1207 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
CK000666 mixed .a 712 to 1513 1 to 807       807/808
(99 %)
14 diff
(98.3 %id)
BG992500 head_neck .a 768 to 963 1 to 197       197/197
(100 %)
7 diff
(96.5 %id)
L44516   .a 786 to 1210 427 to 2       426/427
(99 %)
1 diff
(99.8 %id)
DB194619 trachea .a 853 to 1401 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA339361 hippocampus .a 880 to 1451 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA314007 hippocampus .a 939 to 1397 2 to 461   capped   460/460
(100 %)
1 diff
(99.8 %id)
DA236239 brain .a 994 to 1580 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA236258 brain .a 994 to 1590 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA863704 placenta .a 1008 to 1576 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BX479462   .a 1020 to 1526 1 to 507       507/507
(100 %)
0 diff
(100 %id)
DB091428 testis .a 1058 to 1628 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
CK000622 mixed .a 1063 to 1845 1 to 782       782/783
(99 %)
7 diff
(99.2 %id)
DA324990 hippocampus .a 1067 to 1530 2 to 465   capped   464/464
(100 %)
1 diff
(99.8 %id)
DA335400 hippocampus .a 1099 to 1694 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
BP352189   .a 1151 to 1737 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
CK000943 mixed .a 1193 to 1936 17 to 755       739/810
(91 %)
13 diff
(98.4 %id)
CK000480 mixed .a 1306 to 2106 22 to 817       796/817
(97 %)
19 diff
(97.7 %id)
DB241346 trachea .a 1366 to 1944 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BQ892954 dorsal root ganglia .a 1415 to 2278 1 to 870       870/911
(95 %)
16 diff
(98.3 %id)
BX499980 Liver .a 1416 to 1774 1 to 360       360/360
(100 %)
7 diff
(98.1 %id)
DA316618 hippocampus .a 1481 to 2037 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BP240706 Liver .a 1493 to 2054 1 to 562       562/562
(100 %)
4 diff
(99.3 %id)
DA863321 placenta .a 1556 to 2212 2 to 658   capped   657/657
(100 %)
0 diff
(100 %id)
CN354834 embryonic stem cells, DMSO-treated H9 cellline .a 1560 to 2009 9 to 458       450/458
(98 %)
6 diff
(98.7 %id)
DA294778 hippocampus .a 1566 to 2147 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BU542905 carcinoma, cell line, Prostate .a 1578 to 2294 1 to 723   AAA   723/876
(82 %)
11 diff
(98.8 %id)
BG008391 placenta_normal .a 1583 to 1811 15 to 242       228/242
(94 %)
6 diff
(97.6 %id)
BF369754 placenta_normal .a 1586 to 1951 384 to 19       366/404
(90 %)
0 diff
(100 %id)
CF995819 mixed .a 1598 to 2331 1 to 734       734/735
(99 %)
6 diff
(99.2 %id)
BG007930 placenta_normal .a 1680 to 2031 365 to 10       356/382
(93 %)
26 diff
(93.2 %id)
DA233960 brain .a 1698 to 2276 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DA996740   .a 1788 to 2322 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
CF786037 mixed .a 1815 to 2665 1 to 848       848/851
(99 %)
20 diff
(97.7 %id)
DA279596 corpus callosum .a 1883 to 2445 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA489575 brain .a 1890 to 2457 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
EB387377 eye, optic nerve .a 1901 to 2751 1 to 851       851/851
(100 %)
0 diff
(100 %id)
AV728627 hypothalamus .a 1959 to 2513 1 to 555       555/722
(76 %)
2 diff
(99.8 %id)
DA619361   .a 1990 to 2572 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA251420 caudate nucleus .a 2003 to 2581 2 to 580   capped   579/583
(99 %)
2 diff
(99.7 %id)
CN354837 embryonic stem cells, DMSO-treated H9 cellline .a 2035 to 2277 1 to 243       243/243
(100 %)
0 diff
(100 %id)
DA159331 amygdala .a 2191 to 2762 2 to 573   capped   572/576
(99 %)
2 diff
(99.7 %id)
DA218358 brain .a 2202 to 2725 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DA358545 subthalamic nucleus .a 2203 to 2773 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA691431   .a 2290 to 2861 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA956089 Spleen .a 2295 to 2829 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA451194 tongue, tumor tissue .a 2297 to 2855 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
BP359976 thalamus .a 2306 to 2884 1 to 582       582/582
(100 %)
7 diff
(98.8 %id)
BF793945 adrenal cortex carcinoma, cell line, adrenal gland .a 2331 to 3014 1 to 695       695/888
(78 %)
23 diff
(97.5 %id)
DA365733 subthalamic nucleus .a 2336 to 2833 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DA945973 Spleen .a 2346 to 2916 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
CN354836 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2356 to 2894 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
DB063466 testis .a 2357 to 2906 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
FN049386 breast carcinoma .a 2390 to 2464 8 to 82       75/82
(91 %)
6 diff
(92.7 %id)
FN072967 breast carcinoma .a 2390 to 2464 11 to 84       74/84
(88 %)
7 diff
(91.7 %id)
DA475618   .a 2393 to 2966 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
BG168977 hypernephroma, cell line, Kidney .a 2423 to 3147 1 to 744       744/904
(82 %)
42 diff
(95.4 %id)
CO249958 Chondrosarcoma Lung Metastasis cell lines, lung .a 2426 to 3015 1 to 587       587/732
(80 %)
19 diff
(97.5 %id)
BP237467 Liver .a 2428 to 3049 1 to 622       622/622
(100 %)
1 diff
(99.9 %id)
BG403563 bladder, transitional cell papilloma, cell line .a 2434 to 3149 12 to 724       713/994
(71 %)
14 diff
(98.6 %id)
CK000240 mixed .a 2461 to 3237 1 to 773       773/785
(98 %)
11 diff
(98.6 %id)
BE539751 cervix .a 2490 to 3139 1 to 650       650/889
(73 %)
30 diff
(96.7 %id)
DA378840 thalamus .a 2508 to 3110 2 to 604   capped   603/603
(100 %)
1 diff
(99.9 %id)
DA031025   .a 2512 to 3065 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BM786385 Ascites, stomach .a 2536 to 3134 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
CO245250 Chondrosarcoma Lung Metastasis cell lines, lung .a 2541 to 3197 8 to 654       649/782
(82 %)
21 diff
(97.4 %id)
AA047356 colon, tumor .a 2614 to 2790 1 to 178     Submitted on the opposite strand 178/178
(100 %)
4 diff
(97.8 %id)
DB134255 thymus .a 2655 to 3191 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
AU279475   .a 2681 to 3237 1 to 557       557/561
(99 %)
2 diff
(99.7 %id)
BE740381 adenocarcinoma cell line, ovary .a 2750 to 3285 1 to 539       539/539
(100 %)
4 diff
(99.3 %id)
DB457935.
matches multiple genes
testis .a 2752 to 3237 1 to 485     also hits gene C18orf8 485/489
(99 %)
3 diff
(99.4 %id)
BE779266 eye, retinoblastoma .a 2758 to 3214 1 to 458       458/459
(99 %)
3 diff
(99.4 %id)
DB493543.
matches multiple genes
hypothalamus .a 2832 to 3318 1 to 487     also hits gene C18orf8 487/487
(100 %)
2 diff
(99.6 %id)
DA255872 caudate nucleus .a 2836 to 3396 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
CR600440 B cells (Ramos cell line) Cot 25-normalized .a 2885 to 5135 1 to 2251       2251/2251
(100 %)
0 diff
(100 %id)
AL560755 B cells from Burkitt lymphoma .a 2895 to 3877 12 to 993       982/993
(98 %)
9 diff
(99.1 %id)
BP239140 Liver .a 2921 to 3517 1 to 597       597/597
(100 %)
4 diff
(99.4 %id)
BG674583 skin .a 2922 to 3789 1 to 861       861/862
(99 %)
18 diff
(98.0 %id)
CU454980 epidermis .a 2942 to 3667 731 to 6     Submitted on the opposite strand 726/731
(99 %)
1 diff
(99.9 %id)
BE159696 head_neck .a 2983 to 3271 4 to 292       289/292
(98 %)
7 diff
(97.7 %id)
DA890750 rectum .a 3002 to 3472 2 to 472   capped   471/485
(97 %)
3 diff
(99.4 %id)
CF619450 Pooled Chondrosarcoma Tumor cells .a 3004 to 3841 10 to 857       850/859
(98 %)
25 diff
(97.1 %id)
BG314933   .a 3010 to 3213 205 to 1       205/214
(95 %)
6 diff
(97.2 %id)
AA113424   .a 3034 to 3407 1 to 377       377/378
(99 %)
4 diff
(99.0 %id)
BG327450 Kidney, renal cell adenocarcinoma .a 3039 to 3842 1 to 789       791/814
(97 %)
35 diff
(95.8 %id)
BG472643 eye, retinoblastoma .a 3043 to 3870 1 to 835       835/841
(99 %)
32 diff
(96.2 %id)
DR156552 human embryonic stem cells differentiated toan early endodermal cell type .a 3086 to 3769 1 to 683       683/683
(100 %)
1 diff
(99.9 %id)
DA288473 corpus callosum .a 3088 to 3646 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BP294913   .a 3088 to 3667 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DA949897 Spleen .a 3107 to 3671 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA662158   .a 3110 to 3661 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
BG285815 bladder, transitional cell papilloma, cell line .a 3115 to 3824 1 to 702       702/726
(96 %)
20 diff
(97.3 %id)
DA091540 cerebellum .a 3121 to 3671 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
CX761989 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3137 to 3868 1 to 724     Submitted on the opposite strand 724/811
(89 %)
15 diff
(98.2 %id)
BP240675 Liver .a 3143 to 3712 1 to 570       570/570
(100 %)
7 diff
(98.8 %id)
BP302241   .a 3156 to 3737 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AA744422 Prostate, stroma .a 3188 to 3427 259 to 19       241/259
(93 %)
2 diff
(99.3 %id)
CF619387 Pooled Chondrosarcoma Tumor cells .a 3238 to 3843 13 to 630       617/921
(66 %)
27 diff
(97.1 %id)
CD516524 White Matter .a 3255 to 4093 1 to 845       845/878
(96 %)
8 diff
(99.1 %id)
BE876799 large cell carcinoma, undifferentiated, lung .a 3276 to 3918 1 to 643       643/643
(100 %)
2 diff
(99.7 %id)
W38163 Pancreas, pancreatic islet .a 3307 to 3768 1 to 461     Submitted on the opposite strand 461/461
(100 %)
4 diff
(99.2 %id)
W38378 Pancreas, pancreatic islet .a 3307 to 3793 1 to 487     Submitted on the opposite strand 487/488
(99 %)
8 diff
(98.4 %id)
H52322 ovarian tumor, ovary .a 3312 to 3629 1 to 317       317/320
(99 %)
4 diff
(98.8 %id)
BX350604   .a 3345 to 4225 880 to 1       880/880
(100 %)
4 diff
(99.6 %id)
BI032174 marrow .a 3353 to 3682 4 to 334       331/336
(98 %)
13 diff
(96.2 %id)
H54250 liver and spleen .a 3401 to 3828 1 to 433       433/433
(100 %)
15 diff
(96.6 %id)
DB018684 esophageal, tumor tissue .a 3404 to 3982 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
CV569512 cornea, eye .a 3445 to 4062 1 to 618       618/618
(100 %)
0 diff
(100 %id)
DA133868 alzheimer cortex .a 3474 to 4029 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AV708379 adrenal gland .a 3515 to 3959 1 to 445       445/445
(100 %)
0 diff
(100 %id)
AV709111 adrenal gland .a 3515 to 3933 1 to 419       419/419
(100 %)
0 diff
(100 %id)
EC450600 Prostate .a 3584 to 3694 1 to 109       109/109
(100 %)
2 diff
(98.2 %id)
EC552438 Prostate .a 3584 to 3694 1 to 108       108/108
(100 %)
3 diff
(97.3 %id)
CK000836 mixed .a 3592 to 4380 1 to 783       783/799
(97 %)
16 diff
(98.0 %id)
CF786087 mixed .a 3592 to 4363 1 to 765       765/827
(92 %)
21 diff
(97.5 %id)
BM726275 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3596 to 4157 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
BI051785 placenta_normal .a 3601 to 3945 21 to 364       344/364
(94 %)
6 diff
(98.4 %id)
TI_154172734   .a 3672 to 4387 86 to 804       719/1016
(70 %)
31 diff
(97.0 %id)
CF141875 CNCAP(3)T-225 cell line, Prostate .a 3673 to 4220 8 to 555       549/555
(98 %)
6 diff
(99.0 %id)
CB115966 Liver .a 3682 to 3963 1 to 282       282/282
(100 %)
1 diff
(99.7 %id)
BM711457 eye, fetal eyes .a 3729 to 4183 1 to 455     Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 455/455
(100 %)
1 diff
(99.8 %id)
BG990769 head_neck .a 3737 to 4291 1 to 561       561/561
(100 %)
36 diff
(93.6 %id)
R21657 placenta .a 3739 to 4104 1 to 376       376/401
(93 %)
18 diff
(95.6 %id)
EH343896   .a 3746 to 3809 1 to 64       64/64
(100 %)
0 diff
(100 %id)
BG115750 duodenal adenocarcinoma, cell line, small intestine .a 3797 to 4592 1 to 787       787/1068
(73 %)
26 diff
(97.6 %id)
DT216990 brain .a 3866 to 4410 1 to 545       545/556
(98 %)
2 diff
(99.7 %id)
BG542345 lung .a 3885 to 4523 1 to 637       637/641
(99 %)
13 diff
(98.0 %id)
BG253314 adenocarcinoma, cell line, Liver .a 3888 to 4698 1 to 808       808/899
(89 %)
29 diff
(96.8 %id)
EL954473 eyeball .a 3918 to 4405 15 to 502       488/502
(97 %)
7 diff
(98.7 %id)
BG674759 skin .a 3925 to 4918 1 to 994   AAA   994/1017
(97 %)
35 diff
(96.6 %id)
BE073393 breast .a 3946 to 4447 503 to 2     Submitted on the opposite strand 502/503
(99 %)
3 diff
(99.5 %id)
W39482 Pancreas, pancreatic islet .a 3991 to 4367 380 to 3     Submitted on the opposite strand 378/380
(99 %)
5 diff
(98.7 %id)
CA495312   .a 4004 to 4882 1 to 881       881/886
(99 %)
12 diff
(98.7 %id)
AA384990 thyroid gland .a 4034 to 4351 1 to 318       318/318
(100 %)
2 diff
(99.4 %id)
EC575532 Prostate .a 4045 to 4134 89 to 1       89/89
(100 %)
1 diff
(98.9 %id)
BQ000143 Fibrosarcoma .a 4055 to 4798 761 to 17   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 745/747
(99 %)
1 diff
(99.9 %id)
CN354838 embryonic stem cells, DMSO-treated H9 cellline .a 4060 to 4809 7 to 756       750/756
(99 %)
7 diff
(99.1 %id)
BM466560 eye, retinoblastoma .a 4075 to 4551 13 to 489       477/1456
(32 %)
16 diff
(99.0 %id)
CB158050 Liver .a 4089 to 4266 1 to 178       178/178
(100 %)
0 diff
(100 %id)
AW369350 breast_normal .a 4092 to 4622 1 to 531       531/531
(100 %)
0 diff
(100 %id)
AW369355 breast_normal .a 4092 to 4631 1 to 540       540/543
(99 %)
4 diff
(99.3 %id)
AW369358 breast_normal .a 4092 to 4534 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
BQ315489 epid_tumor .a 4109 to 4484 14 to 389       374/389
(96 %)
10 diff
(97.5 %id)
AL582157 B cells from Burkitt lymphoma .a 4109 to 5135 1027 to 1       1027/1027
(100 %)
2 diff
(99.9 %id)
TI_159681691   .a 4117 to 4960 924 to 83       842/1050
(80 %)
26 diff
(97.6 %id)
BF839813 head_neck .a 4124 to 4306 3 to 192       190/193
(98 %)
15 diff
(92.3 %id)
AW382346 head_neck .a 4129 to 4387 1 to 260       260/260
(100 %)
6 diff
(97.7 %id)
BF812534 colon_ins .a 4148 to 4639 513 to 21     Submitted on the opposite strand 493/513
(96 %)
0 diff
(100 %id)
BF772508 epid_tumor .a 4163 to 4628 18 to 483       466/486
(95 %)
11 diff
(97.8 %id)
BF822811 kidney_tumor .a 4179 to 4365 191 to 8     Submitted on the opposite strand 184/206
(89 %)
4 diff
(98.1 %id)
BE815828 breast_normal .a 4222 to 4423 1 to 202       202/205
(98 %)
6 diff
(97.1 %id)
BE815856 breast_normal .a 4222 to 4423 1 to 202       202/205
(98 %)
5 diff
(97.6 %id)
BE763417 nervous_tumor .a 4236 to 4426 215 to 27       189/217
(87 %)
0 diff
(100 %id)
CD607965   .a 4244 to 4886 1 to 644       644/644
(100 %)
7 diff
(99.0 %id)
CD607967   .a 4245 to 5046 1 to 800       800/804
(99 %)
8 diff
(99.1 %id)
DT217243 brain .a 4245 to 4918 1 to 673       673/673
(100 %)
2 diff
(99.8 %id)
BM832227 stomach .a 4249 to 4673 1 to 425       425/425
(100 %)
0 diff
(100 %id)
BM831828 stomach .a 4250 to 4578 1 to 329       329/329
(100 %)
0 diff
(100 %id)
AW369294 breast_normal .a 4264 to 4615 356 to 7       350/356
(98 %)
0 diff
(100 %id)
CA432648 cell lines, Chondrosarcoma .a 4281 to 4947 685 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 667/667
(100 %)
0 diff
(100 %id)
AI857761 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4307 to 4968 687 to 28   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 660/707
(93 %)
10 diff
(98.6 %id)
TI_154034251   .a 4312 to 5170 935 to 84   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 852/963
(88 %)
20 diff
(98.0 %id)
W53013 parathyroid gland, parathyroid tumor .a 4314 to 4733 1 to 426   fully sequenced, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 426/426
(100 %)
1 diff
(99.8 %id)
AI803200 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4317 to 4809 1 to 493     Submitted on the opposite strand 493/493
(100 %)
2 diff
(99.6 %id)
CA428645 Cell Line, Chondrosarcoma .a 4324 to 4937 632 to 17   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 616/616
(100 %)
2 diff
(99.7 %id)
CA749019 cell lines, Chondrosarcoma .a 4337 to 4947 627 to 17   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 611/611
(100 %)
0 diff
(100 %id)
EC538374 Prostate .a 4342 to 4447 1 to 106       106/106
(100 %)
0 diff
(100 %id)
AI001914   .a 4345 to 4951 608 to 1       608/609
(99 %)
5 diff
(99.2 %id)
BG026883 Bone, osteosarcoma, cell line .a 4356 to 5039 1 to 680       680/920
(73 %)
9 diff
(99.1 %id)
W28052 eye, retina .a 4361 to 4853 15 to 507       493/587
(83 %)
14 diff
(97.7 %id)
AA036841 uterus .a 4366 to 4844 1 to 479       479/479
(100 %)
2 diff
(99.6 %id)
EC560651 Prostate .a 4422 to 4512 16 to 107       92/107
(85 %)
6 diff
(94.4 %id)
BF990253 placenta_normal .a 4466 to 4634 1 to 169       169/169
(100 %)
1 diff
(99.5 %id)
BF995333 placenta_normal .a 4466 to 4634 1 to 169       169/169
(100 %)
1 diff
(99.5 %id)
BG001956 placenta_normal .a 4466 to 4634 1 to 169       169/169
(100 %)
1 diff
(99.5 %id)
DB470510.
matches multiple genes
hippocampus .a 4479 to 4940 1 to 459     also hits gene C18orf8 459/459
(100 %)
26 diff
(94.4 %id)
AL046206 testis .a 4485 to 4918 1 to 434       434/434
(100 %)
0 diff
(100 %id)
BF884757 lung_tumor .a 4522 to 4828 15 to 324       310/324
(95 %)
6 diff
(98.2 %id)
BQ323509 colon_ins .a 4545 to 4924 1 to 380       380/380
(100 %)
16 diff
(95.8 %id)
EC444178 Prostate .a 4551 to 4647 20 to 116       97/116
(83 %)
8 diff
(93.2 %id)
EC556623 Prostate .a 4685 to 4765 1 to 81       81/87
(93 %)
4 diff
(95.5 %id)
W53014 parathyroid gland, parathyroid tumor .a 4703 to 5170 477 to 11   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 467/467
(100 %)
2 diff
(99.6 %id)
AA113342   .a 4755 to 5172 423 to 6       418/424
(98 %)
0 diff
(100 %id)
BM670707 eye, fetal eyes .a 4787 to 5170 402 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 384/384
(100 %)
0 diff
(100 %id)
H54251 liver and spleen .a 4906 to 5132 228 to 1       228/230
(99 %)
2 diff
(99.2 %id)
AI928289 2 pooled tumors (clear cell type), Kidney .a 4918 to 5172 259 to 3       257/492
(52 %)
0 diff
(100 %id)
AI565358 Kidney .a 4970 to 5170 233 to 33   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 201/201
(100 %)
3 diff
(98.6 %id)
AI889545 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 5040 to 5174 137 to 3   tiling clone,   135/137
(98 %)
0 diff
(100 %id)
AK293779 cerebellum .b 1 to 3171 1 to 3171 exact tiling clone,   3171/3171
(100 %)
0 diff
(100 %id)
DC307064 cerebellum .b 1 to 511 1 to 511       511/511
(100 %)
0 diff
(100 %id)
AV707605 adrenal gland .b 2932 to 3618 1 to 684       684/708
(96 %)
30 diff
(95.8 %id)
CA438246 lung, Metastatic Chondrosarcoma .b 2945 to 3616 690 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 672/672
(100 %)
0 diff
(100 %id)
DA757079   .b 2949 to 3496 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BM677584 eye, fetal eye .b 2950 to 3616 685 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 667/667
(100 %)
2 diff
(99.8 %id)
CA443474 Fibrosarcoma .b 2966 to 3616 669 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 651/651
(100 %)
0 diff
(100 %id)
AW582271 stomach .b 2981 to 3446 1 to 466       466/478
(97 %)
5 diff
(99.0 %id)
CA430148 Cell Line, Chondrosarcoma .b 2983 to 3616 652 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 634/634
(100 %)
0 diff
(100 %id)
CA417094 Chondrosarcoma Cell line .b 2996 to 3616 639 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 621/621
(100 %)
0 diff
(100 %id)
CA416741 Chondrosarcoma Cell line .b 2996 to 3616 639 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 621/621
(100 %)
0 diff
(100 %id)
BU608420 Human Lung Epithelial cells, lung .b 3004 to 3616 631 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 613/613
(100 %)
2 diff
(99.7 %id)
AA634249 lung .b 3020 to 3618 599 to 1   tiling clone,   599/599
(100 %)
0 diff
(100 %id)
AA953265 2 pooled tumors (clear cell type), Kidney .b 3031 to 3383 353 to 1       353/353
(100 %)
0 diff
(100 %id)
BE672087 pooled germ cell tumors .b 3038 to 3618 574 to 1       574/574
(100 %)
3 diff
(99.5 %id)
BU630755 cell lines, Chondrosarcoma .b 3059 to 3616 576 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 558/558
(100 %)
0 diff
(100 %id)
AW815314 stomach .b 3069 to 3446 105 to 482       378/494
(76 %)
6 diff
(98.8 %id)
AA634267 lung .b 3069 to 3618 551 to 1       551/551
(100 %)
2 diff
(99.7 %id)
AI624732 pooled germ cell tumors .b 3088 to 3616 524 to 1       524/575
(91 %)
11 diff
(98.1 %id)
TI_154196907   .b 3104 to 3409 1 to 306   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 306/306
(100 %)
7 diff
(97.8 %id)
TI_154197291   .b 3105 to 3409 46 to 350   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 305/350
(87 %)
6 diff
(98.3 %id)
AW026669 brain, glioblastoma (pooled) .b 3111 to 3616 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AI801874 carcinoid, lung .b 3117 to 3617 501 to 1       501/501
(100 %)
1 diff
(99.9 %id)
AI950315 2 pooled tumors (clear cell type), Kidney .b 3117 to 3618 508 to 7       502/508
(98 %)
0 diff
(100 %id)
TI_151781796   .b 3120 to 3618 80 to 580       501/1002
(50 %)
35 diff
(96.6 %id)
TI_151758696   .b 3120 to 3616 587 to 90   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 498/910
(54 %)
30 diff
(96.8 %id)
AA631993 breast .b 3122 to 3616 509 to 15   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 495/495
(100 %)
0 diff
(100 %id)
AI302175 2 pooled tumors (clear cell type), Kidney .b 3133 to 3618 489 to 4       486/489
(99 %)
0 diff
(100 %id)
BJ993397 hepatoblastoma .b 3158 to 3581 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AI650423 pooled germ cell tumors .b 3159 to 3616 472 to 15   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 458/458
(100 %)
1 diff
(99.8 %id)
AI765721 2 pooled tumors (clear cell type), Kidney .b 3159 to 3615 468 to 11       458/468
(97 %)
0 diff
(100 %id)
AI653185 pooled germ cell tumors .b 3160 to 3618 460 to 2       459/460
(99 %)
0 diff
(100 %id)
N22348 cochlea, ear .b 3164 to 3618 465 to 7       459/465
(98 %)
0 diff
(100 %id)
AW274969 pooled germ cell tumors .b 3168 to 3616 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AI588943 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3171 to 3616 458 to 13   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 446/446
(100 %)
2 diff
(99.6 %id)
AI627989 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 3171 to 3618 448 to 1       448/448
(100 %)
0 diff
(100 %id)
AI126104 placenta .b 3173 to 3615 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI926875 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3181 to 3617 437 to 1       437/437
(100 %)
0 diff
(100 %id)
AI017116   .b 3185 to 3618 435 to 2       434/435
(99 %)
0 diff
(100 %id)
BF589894 Kidney .b 3194 to 3618 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AI192655 lung .b 3198 to 3618 422 to 2       421/422
(99 %)
0 diff
(100 %id)
N53384 multiple sclerosis lesions .b 3212 to 3616 410 to 1       410/461
(88 %)
6 diff
(98.7 %id)
AI767353 2 pooled tumors (clear cell type), Kidney .b 3216 to 3618 405 to 4       402/405
(99 %)
0 diff
(100 %id)
AI832111 colon, colon tumor, RER+ .b 3220 to 3563 403 to 60       344/403
(85 %)
0 diff
(100 %id)
AA583079 germ cell tumor .b 3232 to 3619 390 to 3       388/390
(99 %)
0 diff
(100 %id)
AV704771 adrenal gland .b 3241 to 3616 1 to 376   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 376/376
(100 %)
0 diff
(100 %id)
BQ430569 embryonal carcinoma, cell line, testis .b 3257 to 3616 1 to 360   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 360/360
(100 %)
0 diff
(100 %id)
AI056380 brain, glioblastoma (pooled) .b 3265 to 3618 360 to 7       354/360
(98 %)
0 diff
(100 %id)
N53373 multiple sclerosis lesions .b 3266 to 3616 351 to 1       351/351
(100 %)
0 diff
(100 %id)
AI282103 2 pooled tumors (clear cell type), Kidney .b 3325 to 3618 299 to 5       295/299
(98 %)
0 diff
(100 %id)
AI435878 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3325 to 3679 377 to 23   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 355/355
(100 %)
0 diff
(100 %id)
AI694677 carcinoid, lung .b 3336 to 3618 283 to 1       283/283
(100 %)
1 diff
(99.7 %id)
N52602 multiple sclerosis lesions .b 3353 to 3616 264 to 1       264/264
(100 %)
0 diff
(100 %id)
AK295715 hippocampus .c 1 to 2789 2 to 2790 H60R L253P M487I I703V tiling clone,   2790/2790
(100 %)
6 diff
(99.8 %id)
DC333892 hippocampus .c 1 to 561 2 to 562       562/562
(100 %)
1 diff
(99.9 %id)
AW029386 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 2518 to 2890 374 to 1       374/379
(98 %)
2 diff
(99.5 %id)
AV703869 adrenal gland .c 2621 to 3290 1 to 673   tiling clone,   673/683
(98 %)
12 diff
(98.3 %id)
DA250718 caudate nucleus .c 2828 to 3395 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB274587 uterus .c 2876 to 3429 2 to 555   tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
CD356899 Blood vessels - aorta, basilar and artery .d 1 to 717 1 to 731 I134M Y161F A162G M172I T173D ... tiling clone,   731/747
(97 %)
46 diff
(93.9 %id)
AI640147 Kidney .d 167 to 883 715 to 1   tiling clone,   715/715
(100 %)
12 diff
(98.4 %id)
AI765289 2 pooled tumors (clear cell type), Kidney .d 303 to 883 597 to 17   AAA   581/633
(91 %)
4 diff
(99.4 %id)
AW973690   .d 337 to 882 547 to 1     Submitted on the opposite strand 547/549
(99 %)
12 diff
(97.9 %id)
AI769437 2 pooled tumors (clear cell type), Kidney .d 368 to 890 526 to 4   tiling clone,   523/526
(99 %)
3 diff
(99.5 %id)
AA553730 breast .d 437 to 884 448 to 1   tiling clone,   448/448
(100 %)
1 diff
(99.8 %id)
TI_151725801   .d 505 to 883 512 to 134   AAA   379/753
(50 %)
4 diff
(99.5 %id)
CA428920 Cell Line, Chondrosarcoma .d 677 to 889 225 to 13   AAA   213/213
(100 %)
10 diff
(95.4 %id)
AA047355 colon, tumor .d 707 to 842 137 to 1     Submitted on the opposite strand 137/137
(100 %)
3 diff
(97.9 %id)
BP272767   .e 1 to 568 7 to 574 W63C L131S F144C R145K tiling clone,   574/577
(99 %)
12 diff
(98.0 %id)
BF358488 lung_normal .f 1 to 503 511 to 4 A6G K11E Y81S F82T Q83S ... tiling clone,   508/511
(99 %)
5 diff
(99.1 %id)
BF358483 lung_normal .f 109 to 523 419 to 5   tiling clone,   415/419
(99 %)
2 diff
(99.6 %id)
BF846149 lung_normal .f 385 to 906 36 to 554   tiling clone,   519/554
(93 %)
6 diff
(99.0 %id)
BF848502 lung_normal .f 389 to 783 1 to 393   tiling clone,   393/393
(100 %)
7 diff
(98.3 %id)
BQ376223 testis_normal .f 504 to 851 346 to 1       346/346
(100 %)
7 diff
(98.0 %id)
TI_154098074   .f 610 to 1590 1035 to 69   tiling clone,   967/1296
(74 %)
0 diff
(100 %id)
BF372790 prostate_tumor .f 757 to 1206 8 to 459   tiling clone,   452/464
(97 %)
13 diff
(97.2 %id)
CA440964 Chondrosarcoma, Left Pubic Bone .f 1004 to 1582 577 to 1   tiling clone,   577/577
(100 %)
2 diff
(99.7 %id)
AI929768 brain, frontal lobe .f 1565 to 2037 473 to 1   tiling clone,   473/483
(97 %)
2 diff
(99.6 %id)
AW157282 brain, frontal lobe .f 1565 to 2037 473 to 1   tiling clone,   473/485
(97 %)
1 diff
(99.8 %id)
BG981558 colon_normal .f 1567 to 1735 1 to 168       168/201
(83 %)
3 diff
(98.6 %id)
BF738114 bladder_tumor .f 1590 to 1787 201 to 2     Submitted on the opposite strand 200/201
(99 %)
0 diff
(100 %id)
DA875995 Prostate .g 1 to 560 2 to 561 exact tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BF846712 lung_normal .h-u 1 to 468 12 to 479   tiling clone,   468/479
(97 %)
6 diff
(98.8 %id)
BI012398 lung_normal .h-u 22 to 481 28 to 492   tiling clone,   465/500
(93 %)
19 diff
(96.2 %id)
BU152680 carcinoma, cell line, Prostate .h-u 456 to 1343 1 to 884   tiling clone,   884/887
(99 %)
15 diff
(98.4 %id)
AW936001 denis_drash .h-u 478 to 897 13 to 433       421/433
(97 %)
6 diff
(98.7 %id)
BI002673 head_normal .h-u 887 to 1355 39 to 503   tiling clone,   465/503
(92 %)
6 diff
(98.9 %id)
AW905542 nervous_normal .h-u 919 to 1153 15 to 249       235/249
(94 %)
8 diff
(96.8 %id)
AW905541 nervous_normal .h-u 921 to 1204 1 to 288       288/338
(85 %)
5 diff
(98.6 %id)
AA190474   .h-u 1170 to 1613 1 to 454   tiling clone,   454/456
(99 %)
11 diff
(97.6 %id)
AA191008   .h-u 1178 to 1604 1 to 429   tiling clone,   429/430
(99 %)
4 diff
(99.1 %id)
BM999412 Fibrosarcoma .h-u 1994 to 2728 753 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 735/735
(100 %)
6 diff
(99.2 %id)
BQ027793 mixed .h-u 2181 to 2728 560 to 14   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 547/547
(100 %)
6 diff
(99.0 %id)
BM710173 eye, optic nerve .h-u 2200 to 2712 1 to 513   tiling clone, fully sequenced,   513/513
(100 %)
0 diff
(100 %id)
R78169 placenta .h-u 2396 to 2721 1 to 330       330/341
(96 %)
7 diff
(98.0 %id)
CK826177 insulinoma, Pancreas .h-u 2497 to 3075 8 to 586   tiling clone,   579/586
(98 %)
6 diff
(99.0 %id)
BM671597 eye, optic nerve .h-u 2682 to 3342 659 to 1   tiling clone, fully sequenced,   659/659
(100 %)
1 diff
(99.9 %id)
BX102160 breast .h-u 2737 to 3324 1 to 600   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 600/600
(100 %)
6 diff
(99.0 %id)
R72346 breast .h-u 2737 to 3159 1 to 427       427/428
(99 %)
10 diff
(97.7 %id)
AA191471   .h-u 2778 to 3271 523 to 28       496/528
(93 %)
0 diff
(100 %id)
BU728517 eye, human retina .h-u 2779 to 3342 576 to 1       576/576
(100 %)
6 diff
(99.0 %id)
BQ477376 insulinoma, Pancreas .h-u 2788 to 3346 572 to 1   tiling clone,   572/572
(100 %)
6 diff
(99.0 %id)
AA121003 uterus .h-u 2798 to 3084 1 to 286   fully sequenced,   286/286
(100 %)
2 diff
(99.4 %id)
CK826176 insulinoma, Pancreas .h-u 2801 to 3346 559 to 1       559/559
(100 %)
6 diff
(99.0 %id)
AA630399   .h-u 2816 to 3326 524 to 1       524/524
(100 %)
7 diff
(98.7 %id)
AA921823 pooled .h-u 2837 to 3329 505 to 1       505/505
(100 %)
6 diff
(98.9 %id)
AA910039 pooled .h-u 2855 to 3329 487 to 1       487/487
(100 %)
6 diff
(98.8 %id)
F37458 pectoral muscle (after mastectomy) .h-u 2873 to 3088 1 to 215       215/215
(100 %)
5 diff
(97.7 %id)
AW293822   .h-u 2954 to 3341 400 to 1       400/400
(100 %)
6 diff
(98.5 %id)
DW413332 Liver .h-u 3009 to 3305 12 to 320       309/320
(96 %)
6 diff
(98.2 %id)
DW428793 Liver .h-u 3009 to 3271 12 to 274       263/274
(95 %)
6 diff
(97.9 %id)
AA191416   .h-u 3025 to 3286 276 to 1       276/276
(100 %)
7 diff
(97.5 %id)
AA115935 uterus .h-u 3054 to 3324 269 to 1   fully sequenced,   269/269
(100 %)
1 diff
(99.7 %id)
AI868930 adenocarcinoma, Pancreas .h-u 3171 to 3331 173 to 1       173/173
(100 %)
6 diff
(96.6 %id)
CD515858 White Matter .i 1 to 769 1 to 779 exact tiling clone,   779/926
(84 %)
14 diff
(98.5 %id)
TI_57165972   .i 136 to 1002 28 to 893   tiling clone,   866/898
(96 %)
21 diff
(97.7 %id)
BI835794 pooled pancreas and spleen .i 141 to 1002 1 to 861   tiling clone,   861/866
(99 %)
15 diff
(98.3 %id)
CN286686 embryonic stem cells, cell lines H1, H7, andH9 .j-u 1 to 631 1 to 631   tiling clone,   631/631
(100 %)
2 diff
(99.7 %id)
BX644809   .j-u 475 to 1237 7 to 769 exact tiling clone,   763/769
(99 %)
6 diff
(99.3 %id)
AI972253 Prostate .k 1 to 439 437 to 1 E10S F11S C12A S13A H14T ... tiling clone,   437/437
(100 %)
4 diff
(99.1 %id)
AI873153 Prostate .k 9 to 361 354 to 1   tiling clone,   354/392
(90 %)
5 diff
(98.8 %id)
DW424645 Liver .k 277 to 548 17 to 288       272/288
(94 %)
6 diff
(98.0 %id)
TI_149280840   .k 288 to 928 719 to 81   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 639/821
(77 %)
5 diff
(99.4 %id)
FN137781 breast carcinoma .k 329 to 437 105 to 4     Submitted on the opposite strand 102/105
(97 %)
0 diff
(100 %id)
BU679425 lung, Primary Lung Epithelial Cells .k 396 to 943 548 to 1   tiling clone,   548/548
(100 %)
0 diff
(100 %id)
BF109596 pooled .k 437 to 927 491 to 1       491/491
(100 %)
0 diff
(100 %id)
AI286308 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .k 641 to 930 290 to 1       290/290
(100 %)
0 diff
(100 %id)
AU185280 skin .k 718 to 924 207 to 1       207/207
(100 %)
0 diff
(100 %id)
CA313184 Human Lung Epithelial cells, lung .k 864 to 1407 561 to 15   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 547/705
(77 %)
1 diff
(99.9 %id)
TI_149308697   .k 922 to 1335 661 to 246       416/1060
(39 %)
0 diff
(100 %id)
BM979867 lung, Primary Lung Epithelial Cells .k 922 to 1335 589 to 174   AAA   416/579
(71 %)
0 diff
(100 %id)
BF978634 melanotic melanoma, high MDR, skin .k 1080 to 1755 1 to 675       675/903
(74 %)
17 diff
(98.2 %id)
EB385694 eye, optic nerve .k 1237 to 2018 1 to 782   tiling clone,   782/782
(100 %)
0 diff
(100 %id)
BG283308 adenocarcinoma, cell line, Prostate .k 1289 to 2113 1 to 828   tiling clone,   828/901
(91 %)
24 diff
(97.4 %id)
AA422019 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 1297 to 1755 1 to 459       459/459
(100 %)
0 diff
(100 %id)
CB270237 adipose .l-u 1 to 540 1 to 540   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
CN294221 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .l-u 150 to 921 7 to 777   tiling clone,   771/777
(99 %)
6 diff
(99.3 %id)
DA043724 bladder .l-u 458 to 1027 2 to 572   tiling clone, to resequence, capped   571/572
(99 %)
2 diff
(99.7 %id)
BF379180 uterus_tumor .l-u 993 to 1130 141 to 5   tiling clone,   137/141
(97 %)
0 diff
(100 %id)
U55987 eye .l-u 1908 to 2629 1 to 722   tiling clone,   722/732
(98 %)
16 diff
(97.9 %id)
H11689 whole brain .l-u 1908 to 2377 1 to 476   tiling clone,   476/476
(100 %)
14 diff
(97.1 %id)
TI_154127394   .l-u 3700 to 4482 863 to 94   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 770/954
(80 %)
13 diff
(98.7 %id)
CD723034 eye, lacrimal gland .l-u 3706 to 4275 1 to 570   tiling clone,   570/570
(100 %)
0 diff
(100 %id)
TI_159698061   .l-u 3716 to 4482 837 to 84   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 754/994
(75 %)
15 diff
(98.5 %id)
U55986 eye .l-u 3722 to 4482 778 to 11       768/778
(98 %)
0 diff
(100 %id)
BF130939 hypernephroma, Kidney .l-u 3724 to 4442 1 to 726       726/878
(82 %)
51 diff
(94.2 %id)
TI_154126660   .l-u 3726 to 4482 833 to 87   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 747/931
(80 %)
14 diff
(98.5 %id)
BU186752 large cell carcinoma, lung .l-u 3733 to 4479 14 to 767       754/944
(79 %)
17 diff
(98.2 %id)
CA310215 Alveolar Macrophage, lung .l-u 3740 to 4482 759 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 741/741
(100 %)
7 diff
(99.1 %id)
BE379537 endometrium, adenocarcinoma cell line, uterus .l-u 3759 to 4482 1 to 723   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 723/723
(100 %)
6 diff
(99.2 %id)
TI_154105130   .l-u 3771 to 4482 789 to 85   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 705/706
(99 %)
9 diff
(98.8 %id)
BU629678 cell lines, Chondrosarcoma .l-u 3780 to 4482 720 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 702/702
(100 %)
1 diff
(99.9 %id)
AA470067   .l-u 3794 to 4264 471 to 1       471/471
(100 %)
0 diff
(100 %id)
CA446413 Chondrosarcoma, Left Pubic Bone .l-u 3794 to 4482 703 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 685/685
(100 %)
5 diff
(99.3 %id)
BM712860 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .l-u 3799 to 4409 1 to 611       611/611
(100 %)
0 diff
(100 %id)
H11600 whole brain .l-u 4024 to 4482 480 to 11       470/480
(97 %)
0 diff
(100 %id)
DB296077 bladder .l-u 4035 to 4482 451 to 1   to resequence,   451/460
(98 %)
4 diff
(99.2 %id)
DA864399 placenta .l-u 4232 to 4821 2 to 592   tiling clone, capped   591/591
(100 %)
1 diff
(99.9 %id)
AI242474 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .l-u 4276 to 4545 292 to 23   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 270/270
(100 %)
1 diff
(99.7 %id)
AI241916 brain, tumor, 5 pooled (see description) .l-u 4276 to 4541 273 to 9       265/273
(97 %)
0 diff
(100 %id)
DW421762 Liver .l-u 4490 to 4769 17 to 296   tiling clone,   280/296
(94 %)
8 diff
(97.3 %id)
DB259777 uterus .m 1 to 573 2 to 574 I25V tiling clone, capped   573/573
(100 %)
2 diff
(99.7 %id)
CU446663 epidermis .n 1 to 755 9 to 764 exact tiling clone,   758/764
(99 %)
7 diff
(99.1 %id)
CD672293 eye, Iris .n 182 to 738 1 to 557       557/557
(100 %)
0 diff
(100 %id)
AI678280 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .n 284 to 621 336 to 1       336/336
(100 %)
3 diff
(99.2 %id)
BM832079 stomach .n 298 to 608 21 to 331       311/331
(93 %)
6 diff
(98.2 %id)
DR980086 placenta .n 332 to 666 334 to 1       334/339
(98 %)
13 diff
(96.2 %id)
AW369071 head_neck .n 660 to 1300 1 to 640   tiling clone,   640/689
(92 %)
6 diff
(99.2 %id)
BF081316 amnion_normal .n 701 to 1034 1 to 334       334/334
(100 %)
10 diff
(97.1 %id)
BM999287 lung, Lung Focal Fibrosis .n 714 to 1376 661 to 1       661/661
(100 %)
8 diff
(98.8 %id)
BX102241 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 728 to 1361 1 to 634       634/634
(100 %)
1 diff
(99.9 %id)
BE065732 breast .n 733 to 1141 1 to 408       408/420
(97 %)
10 diff
(97.7 %id)
AA455616 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 735 to 1092 1 to 357   fully sequenced,   357/357
(100 %)
2 diff
(99.5 %id)
AW372017 breast .n 803 to 1141 1 to 339       339/351
(96 %)
17 diff
(95.2 %id)
CF130042 Chondrosarcoma Lung Metastasis cell lines, lung .n 835 to 1385 11 to 561   tiling clone,   551/563
(97 %)
6 diff
(99.0 %id)
TI_154191952   .n 835 to 1385 61 to 611       551/1034
(53 %)
6 diff
(99.5 %id)
BE742377 adenocarcinoma cell line, ovary .n 841 to 1478 1 to 641       641/641
(100 %)
12 diff
(98.2 %id)
AW195336 Kidney .n 862 to 1375 515 to 1       515/515
(100 %)
1 diff
(99.9 %id)
AW058527 Kidney .n 899 to 1362 464 to 1       464/464
(100 %)
1 diff
(99.8 %id)
AI638065 pooled germ cell tumors .n 906 to 1299 394 to 1       394/394
(100 %)
6 diff
(98.5 %id)
AI498697 Kidney .n 919 to 1363 445 to 1       445/445
(100 %)
1 diff
(99.8 %id)
AI080206 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 931 to 1366 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
AI241344 Kidney .n 934 to 1362 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AI082637 brain, glioblastoma (pooled) .n 961 to 1365 404 to 1       404/404
(100 %)
2 diff
(99.6 %id)
AA456110 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 1062 to 1369 308 to 1   fully sequenced,   308/308
(100 %)
6 diff
(98.1 %id)
AI276564 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 1331 to 1758 427 to 1   tiling clone,   427/427
(100 %)
1 diff
(99.8 %id)
AA636132 invasive tumor (cell line), Prostate .n 1481 to 1760 282 to 3   tiling clone,   280/282
(99 %)
0 diff
(100 %id)
BM693702 eye, lens .o 1 to 114 1 to 117   tiling clone, Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 117/117
(100 %)
1 diff
(99.2 %id)
DA469114   .o 20 to 603 2 to 585   tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
AU279910   .o 66 to 621 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
AA299947 uterus .o 219 to 580 1 to 364     Submitted on the opposite strand 364/368
(98 %)
10 diff
(97.3 %id)
AW369318 breast_normal .o 245 to 862 640 to 24       617/640
(96 %)
0 diff
(100 %id)
AW369271 breast_normal .o 307 to 573 269 to 4       266/269
(98 %)
0 diff
(100 %id)
AV710033 adrenal cortico adenoma for Cushing'ssyndrome .o 407 to 1136 1 to 725       725/742
(97 %)
20 diff
(97.4 %id)
BX118271 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 501 to 1226 1 to 727   tiling clone,   727/727
(100 %)
1 diff
(99.9 %id)
AA456730 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 501 to 973 1 to 473   fully sequenced,   473/473
(100 %)
0 diff
(100 %id)
BQ293285 amnion_normal .o 684 to 1021 340 to 3       338/341
(99 %)
0 diff
(100 %id)
AW470570 colon, moderately-differentiated adenocarcinoma .o 914 to 1131 218 to 1       218/218
(100 %)
2 diff
(99.1 %id)
AA455174 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 951 to 1288 339 to 2   tiling clone, fully sequenced,   338/339
(99 %)
0 diff
(100 %id)
BM670839 eye, lens .o 1335 to 1797 481 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 463/463
(100 %)
0 diff
(100 %id)
BF093279 testis_normal .p 1 to 338 35 to 372 Y2V     345/377
(91 %)
10 diff
(97.4 %id)
BF093286 testis_normal .p 1 to 338 351 to -1 exact tiling clone,   346/366
(94 %)
0 diff
(100 %id)
AK308491   .p 1 to 1414 2 to 1413 exact tiling clone,   1413/1413
(100 %)
7 diff
(99.6 %id)
DA027687   .p 1 to 581 2 to 581 exact capped   580/580
(100 %)
4 diff
(99.4 %id)
BQ224930 epithelioid carcinoma, Pancreas .p 467 to 1269 1 to 817   tiling clone,   817/954
(85 %)
24 diff
(97.5 %id)
AV705532 adrenal gland .p 734 to 916 10 to 192   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 183/192
(95 %)
6 diff
(96.9 %id)
AA191005   .p 980 to 1351 47 to 420       374/386
(96 %)
7 diff
(98.2 %id)
BU634440 cell lines, Chondrosarcoma .q-u 235 to 821 606 to 19 exact tiling clone, AAA   588/588
(100 %)
1 diff
(99.9 %id)
CA395475 eye, RPE/choroid .r-u 1 to 470 1 to 470   tiling clone,   470/470
(100 %)
1 diff
(99.8 %id)
DA203621 brain .r-u 234 to 811 2 to 580 H46Q V48S A49G A50S Q51T ... tiling clone, capped   579/579
(100 %)
1 diff
(99.9 %id)
CV356407 nervous_tumor .r-u 423 to 788 1 to 379       379/386
(98 %)
46 diff
(88.1 %id)
BX115657 liver and spleen .s-u 1 to 703 1 to 703 exact tiling clone,   703/703
(100 %)
0 diff
(100 %id)
AA699706 liver and spleen .s-u 291 to 771 481 to 1 exact tiling clone,   481/481
(100 %)
0 diff
(100 %id)
AI038269 liver and spleen .s-u 295 to 771 477 to 1 exact     477/478
(99 %)
0 diff
(100 %id)
AI081627 liver and spleen .s-u 363 to 771 407 to 1       407/407
(100 %)
8 diff
(98.1 %id)
DA227653 brain .t 1 to 566 2 to 568 exact tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DB070503 testis .t 1 to 525 2 to 528 exact capped   527/527
(100 %)
2 diff
(99.7 %id)
DA333406 hippocampus .t 2 to 591 2 to 591   tiling clone, capped   590/595
(99 %)
1 diff
(99.9 %id)
DA358975 subthalamic nucleus .u-u 1 to 542 2 to 543 exact tiling clone, capped   542/542
(100 %)
1 diff
(99.9 %id)
N47317 multiple sclerosis lesions .va-u 1 to 517 517 to 1 exact tiling clone,   517/517
(100 %)
3 diff
(99.5 %id)
AA683283 schizophrenic brain S-11 frontal lobe .vb-u 1 to 444 442 to 2 C15A C52A V53Y R54G tiling clone,   441/442
(99 %)
0 diff
(100 %id)
AI902775 breast .vc-u 1 to 175 174 to 2 V18G N19I Y20T S21A K22S ... tiling clone,   173/174
(99 %)
0 diff
(100 %id)
AV703991 adrenal gland Gene NPC1, variant not shown         Suspected internal deletion, this clone was ignored    
BG949807 breast_normal Gene NPC1, variant not shown              
DB361013 mammary gland Gene NPC1, variant not shown         This clone was ignored    
AU121807 mammary gland Gene NPC1, variant not shown       capped This clone was ignored    
DW424532 Liver Gene NPC1, variant not shown              
DA334791 hippocampus Gene NPC1, variant not shown       capped Suspected internal deletion, this clone was ignored    
W89127 liver and spleen Gene NPC1, variant not shown         This clone was ignored    
AA633195 colon, colon tumor RER+ Gene NPC1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j-u, .k, .l-u, .m, .n, .o, .p, .q-u, .r-u, .s-u, .t, .u-u, .va-u, .vb-u, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC