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Gene NPATTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
171 supporting clones for gene NPAT back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR977030 T-Lymphocytes .a 1 to 911 1 to 910   tiling clone,   910/926
(98 %)
2 diff
(99.8 %id)
AK290020 hippocampus .a 5 to 4703 1 to 4699 L540F E785G Q1145R     4699/4699
(100 %)
6 diff
(99.9 %id)
BP228542 brain .a 5 to 585 1 to 582       582/582
(100 %)
14 diff
(97.6 %id)
NM_002519.2   .a 5 to 5938 1 to 5934 exact RefSeq, AAA   5934/5934
(100 %)
0 diff
(100 %id)
DA086322 cerebellum .a 6 to 556 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA217668 brain .a 6 to 544 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DA332291 hippocampus .a 6 to 599 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA338219 hippocampus .a 6 to 600 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA449407 tongue, tumor tissue .a 6 to 538 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA708261   .a 6 to 576 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
AU133314   .a 6 to 748 2 to 744   capped   743/779
(95 %)
11 diff
(98.6 %id)
DA856614 placenta .a 6 to 561 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA856632 placenta .a 6 to 562 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA858103 placenta .a 6 to 552 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA989171 synovial membrane tissue from rheumatioidarthritis .a 6 to 562 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB090886 testis .a 6 to 584 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BC040356 Testis, embryonal carcinoma .a 14 to 4206 1 to 4193   available from MGC, AAA   4193/4193
(100 %)
2 diff
(100.0 %id)
BG258685 embryonal carcinoma, cell line, testis .a 14 to 748 1 to 732   available from MGC,   732/815
(89 %)
27 diff
(96.7 %id)
CD655125 Embryonic Stem cells .a 15 to 742 12 to 732       721/771
(93 %)
19 diff
(97.6 %id)
DB066494 testis .a 15 to 556 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
BX489978   .a 16 to 667 1 to 651       651/651
(100 %)
2 diff
(99.7 %id)
CD699672 normal nasopharynx .a 23 to 568 22 to 564       543/564
(96 %)
9 diff
(98.5 %id)
DA801043 brain .a 24 to 538 2 to 517   capped   516/516
(100 %)
1 diff
(99.9 %id)
BG942835 blood .a 26 to 383 1 to 358       358/358
(100 %)
1 diff
(99.8 %id)
BP233156 muscle .a 26 to 605 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA103917 cerebellum .a 27 to 581 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA109931 cerebellum .a 27 to 575 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA194576 amygdala .a 27 to 612 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA318450 hippocampus .a 27 to 587 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA804539 brain .a 27 to 538 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA807590 brain .a 27 to 568 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA992802 synovial membrane tissue from rheumatioidarthritis .a 27 to 600 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB064456 testis .a 27 to 593 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB066970 testis .a 27 to 577 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB226992 trachea .a 27 to 608 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DB227574 trachea .a 27 to 595 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA339638 hippocampus .a 28 to 601 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB212599 trachea .a 28 to 595 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BC050561 Lymph, lymphoma .a 32 to 3750 13 to 3731   available from MGC, AAA   3719/3719
(100 %)
2 diff
(100.0 %id)
BM476474 lymph, lymphoma, cell line .a 32 to 1073 25 to 1072   available from MGC,   1048/1072
(97 %)
36 diff
(96.7 %id)
D83243 placenta, testis .a 41 to 5939 1 to 5900 V575I tiling clone,   5900/5900
(100 %)
6 diff
(99.9 %id)
DA241466 brain .a 45 to 560 2 to 517   capped   516/516
(100 %)
1 diff
(99.9 %id)
X97186   .a 73 to 5938 1 to 5867 I295L L399M Y471N V575I V621I ... tiling clone, AAA   5867/5867
(100 %)
11 diff
(99.9 %id)
AK291687 placenta .a 81 to 3451 1 to 3371       3371/3371
(100 %)
6 diff
(99.9 %id)
DA855567 placenta .a 82 to 641 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BC136270 Testicle, PCR rescued clones .a 84 to 5194 1 to 5112 V575I N999K     5112/5112
(100 %)
3 diff
(100.0 %id)
U58852   .a 107 to 3614 1 to 3508   tiling clone,   3508/3840
(91 %)
5 diff
(99.9 %id)
BG392669 embryonal carcinoma, cell line, testis .a 241 to 1015 1 to 773       773/879
(87 %)
21 diff
(97.7 %id)
BX484956   .a 362 to 918 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DA212052 brain .a 483 to 998 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
DN914826   .a 516 to 1032 1 to 517       517/517
(100 %)
4 diff
(99.3 %id)
BI047526 stomach .a 580 to 848 24 to 292       269/292
(92 %)
13 diff
(95.6 %id)
BI013519 lung_tumor .a 595 to 848 1 to 257       255/257
(99 %)
11 diff
(95.8 %id)
DA238387 brain .a 692 to 1271 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
AU128962   .a 784 to 1526 2 to 750   capped   749/873
(85 %)
22 diff
(97.5 %id)
DA029604   .a 899 to 1478 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA786630 brain .a 1252 to 1825 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CD642621 Embryonic Stem cells .a 1322 to 2129 12 to 809       798/840
(95 %)
13 diff
(98.5 %id)
CN267248 embryonic stem cells, cell lines H1, H7, andH9 .a 1379 to 1547 1 to 169       169/169
(100 %)
0 diff
(100 %id)
DA932470 Spleen .a 1636 to 2210 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CN267249 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1760 to 2481 1 to 722       722/722
(100 %)
1 diff
(99.9 %id)
DA808684 brain .a 1786 to 2347 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
EH348891   .a 1825 to 1899 1 to 75       75/75
(100 %)
0 diff
(100 %id)
DN912471   .a 1849 to 1943 1 to 95       95/95
(100 %)
3 diff
(96.9 %id)
BG165136 hypernephroma, cell line, Kidney .a 1873 to 2610 1 to 728       728/949
(76 %)
27 diff
(97.2 %id)
BX476055   .a 1919 to 2477 1 to 556       556/556
(100 %)
7 diff
(98.8 %id)
DA097139 cerebellum .a 2001 to 2560 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BE613969 leiomyosarcoma, uterus .a 2143 to 2798 1 to 655       655/764
(85 %)
8 diff
(99.0 %id)
AW502413 lymph .a 2146 to 2594 1 to 449       449/449
(100 %)
8 diff
(98.3 %id)
TI_154157764   .a 2153 to 2768 78 to 693       616/617
(99 %)
32 diff
(94.9 %id)
CN267997 embryonic stem cells, cell lines H1, H7, andH9 .a 2165 to 2306 10 to 151       142/151
(94 %)
8 diff
(94.8 %id)
BF969080 adrenal cortex carcinoma, cell line, adrenal gland .a 2180 to 2892 1 to 714       714/719
(99 %)
13 diff
(98.2 %id)
TI_1971559265   .a 2225 to 3122 14 to 909       896/1124
(79 %)
14 diff
(98.8 %id)
DA034448   .a 2374 to 2909 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA076430 cerebellum .a 2392 to 2943 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DN914825   .a 2488 to 3217 723 to 1       723/728
(99 %)
10 diff
(98.7 %id)
AW505141 lymph .a 2504 to 3047 1 to 544       544/544
(100 %)
5 diff
(99.1 %id)
CF138343 lymph .a 2504 to 2780 1 to 277       277/277
(100 %)
8 diff
(97.2 %id)
TI_154161594   .a 2510 to 3080 75 to 645       571/571
(100 %)
1 diff
(99.9 %id)
TI_154168247   .a 2510 to 2966 76 to 535       460/505
(91 %)
15 diff
(97.1 %id)
TI_1971559267   .a 2645 to 3792 10 to 1156       1147/1201
(95 %)
45 diff
(96.3 %id)
CD689574 normal nasopharynx .a 2890 to 3499 40 to 649       611/649
(94 %)
6 diff
(99.1 %id)
TI_57164669   .a 2912 to 3652 61 to 805       745/907
(82 %)
28 diff
(97.0 %id)
TI_57164535   .a 2919 to 3705 28 to 808       781/808
(96 %)
19 diff
(97.7 %id)
BI834063 pooled pancreas and spleen .a 2920 to 3705 1 to 780       780/780
(100 %)
14 diff
(98.3 %id)
BI835955 pooled pancreas and spleen .a 2921 to 3652 1 to 736       736/838
(87 %)
23 diff
(97.3 %id)
AA704220 liver and spleen .a 2948 to 3451 504 to 1       504/504
(100 %)
5 diff
(99.1 %id)
R80096 placenta .a 3027 to 3464 1 to 447       447/450
(99 %)
16 diff
(96.5 %id)
TI_1971559261   .a 3074 to 4176 1 to 1100       1100/1210
(90 %)
23 diff
(98.1 %id)
R57983   .a 3091 to 3312 1 to 222       222/222
(100 %)
1 diff
(99.6 %id)
BU663369 blood .a 3212 to 3837 12 to 635       624/635
(98 %)
6 diff
(99.1 %id)
AA316491 colon .a 3263 to 3765 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
AA305136 colon .a 3284 to 3579 1 to 296       296/296
(100 %)
0 diff
(100 %id)
AW960183   .a 3285 to 3910 1 to 624       624/634
(98 %)
20 diff
(96.9 %id)
BM799764 eye, retinoblastoma .a 3340 to 4316 34 to 1021       988/1122
(88 %)
36 diff
(96.8 %id)
TI_1971559259   .a 3550 to 4648 1 to 1089       1089/1203
(90 %)
25 diff
(98.0 %id)
FN065662 breast carcinoma .a 3595 to 3666 1 to 75       75/75
(100 %)
6 diff
(92.0 %id)
AW009438 colon .a 3690 to 4302 614 to 2       613/615
(99 %)
0 diff
(100 %id)
AU154681   .a 3744 to 4294 554 to 1       554/554
(100 %)
17 diff
(97.0 %id)
BP292111 lung .a 3750 to 4316 1 to 567       567/568
(99 %)
8 diff
(98.6 %id)
AU151172   .a 3761 to 4311 550 to 3       548/576
(95 %)
0 diff
(100 %id)
AA702253 liver and spleen .a 3791 to 4294 504 to 1       504/509
(99 %)
1 diff
(99.9 %id)
CR736963   .a 3793 to 4298 1 to 506       506/506
(100 %)
0 diff
(100 %id)
BF224010 pooled germ cell tumors .a 3802 to 4294 493 to 1       493/495
(99 %)
2 diff
(99.6 %id)
W86252 liver and spleen .a 3819 to 4294 477 to 1       477/478
(99 %)
6 diff
(98.8 %id)
AA677402 liver and spleen .a 3836 to 4290 453 to 1       453/453
(100 %)
2 diff
(99.6 %id)
AA700181 liver and spleen .a 3840 to 4205 367 to 1       367/368
(99 %)
5 diff
(98.7 %id)
BE550089 carcinoid, lung .a 3842 to 4205 364 to 1       364/364
(100 %)
1 diff
(99.8 %id)
DA545341   .a 3849 to 4403 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CT000974 T-Lymphocytes .a 3881 to 4761 1 to 883       883/883
(100 %)
3 diff
(99.7 %id)
BE614200 leiomyosarcoma, uterus .a 3927 to 4649 730 to 1       730/733
(99 %)
20 diff
(97.3 %id)
TI_149274383   .a 3973 to 4703 843 to 119   AAA   725/934
(77 %)
8 diff
(99.2 %id)
TI_1971559263   .a 4025 to 5098 1 to 1064       1064/1172
(90 %)
37 diff
(96.9 %id)
AU120202 whole embryo, mainly body .a 4083 to 4901 2 to 821   capped   820/820
(100 %)
11 diff
(98.7 %id)
BE966161 leiomyosarcoma, uterus .a 4089 to 4703 633 to 21   AAA   613/861
(71 %)
23 diff
(97.4 %id)
FN078631 breast carcinoma .a 4093 to 4146 1 to 54       54/54
(100 %)
0 diff
(100 %id)
BM968537 lung, Primary Lung Epithelial Cells .a 4114 to 4703 608 to 19   AAA   590/590
(100 %)
1 diff
(99.9 %id)
BE383899 melanotic melanoma, skin .a 4125 to 4888 14 to 781       768/784
(97 %)
18 diff
(97.8 %id)
FN088617 breast carcinoma .a 4133 to 4212 84 to 6     Submitted on the opposite strand 79/84
(94 %)
0 diff
(100 %id)
AI635648 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4175 to 4705 531 to 1       531/531
(100 %)
1 diff
(99.9 %id)
AJ706049 bone marrow .a 4186 to 4544 1 to 359       359/359
(100 %)
6 diff
(98.4 %id)
BP378752 uterus .a 4204 to 4784 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AW043585 pooled .a 4275 to 5061 781 to 1       781/782
(99 %)
15 diff
(98.1 %id)
AI961122 pooled germ cell tumors .a 4292 to 4703 425 to 14   AAA   412/412
(100 %)
0 diff
(100 %id)
CN267250 embryonic stem cells, DMSO-treated H9 cellline .a 4313 to 4766 1 to 453       453/453
(100 %)
2 diff
(99.6 %id)
AU146333 whole embryo, mainly body .a 5088 to 5647 552 to 1       552/552
(100 %)
21 diff
(96.2 %id)
AK301256 Spleen .b 1 to 1806 1 to 1806 D123N T264A tiling clone,   1806/1806
(100 %)
2 diff
(99.9 %id)
DC391749 Spleen .b 1 to 466 1 to 466       466/466
(100 %)
0 diff
(100 %id)
BX955787   .b 43 to 690 1 to 648       648/648
(100 %)
2 diff
(99.7 %id)
BX955802   .b 43 to 728 1 to 686   tiling clone,   686/686
(100 %)
2 diff
(99.8 %id)
AA292597 germinal center B cell .b 1624 to 2021 1 to 398       398/398
(100 %)
0 diff
(100 %id)
DA073319 cerebellum .b 1627 to 2168 2 to 543   tiling clone, capped   542/542
(100 %)
1 diff
(99.9 %id)
BG290456 bladder, transitional cell papilloma, cell line .b 1694 to 2305 1 to 613   tiling clone,   613/944
(64 %)
8 diff
(99.2 %id)
AI572283 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1708 to 1972 265 to 1       265/265
(100 %)
0 diff
(100 %id)
FN114962 breast carcinoma .b 1883 to 1951 70 to 1     Submitted on the opposite strand 70/71
(98 %)
1 diff
(98.6 %id)
AI769133 pooled .b 1901 to 2329 434 to 5       430/434
(99 %)
0 diff
(100 %id)
AI499564 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 1914 to 2324 412 to 1   tiling clone,   412/412
(100 %)
1 diff
(99.8 %id)
BQ023030 placenta .b 1933 to 2328 416 to 19   AAA   398/398
(100 %)
5 diff
(98.8 %id)
BF701700 brain, primitive neuroectoderm .b 1985 to 2371 1 to 388       388/388
(100 %)
1 diff
(99.8 %id)
FN175235 breast carcinoma .b 2108 to 2216 1 to 108       108/111
(97 %)
5 diff
(95.5 %id)
TI_1971559257   .b 2143 to 2461 1 to 319       319/1229
(25 %)
5 diff
(99.6 %id)
BG778097 adenocarcinoma, Prostate .b 2222 to 2850 33 to 668   tiling clone,   636/668
(95 %)
6 diff
(99.2 %id)
AU153461   .b 2507 to 3017 507 to 1   tiling clone,   507/580
(87 %)
10 diff
(98.3 %id)
AW118709 pooled .b 2528 to 3014 487 to 1       487/487
(100 %)
0 diff
(100 %id)
AV655688 corresponding non cancerous liver tissue .b 2529 to 3014 1 to 486   AAA Submitted on the opposite strand 486/486
(100 %)
1 diff
(99.8 %id)
AA969959 pooled .b 2563 to 3014 452 to 1       452/452
(100 %)
0 diff
(100 %id)
BX495500 Liver .b 2578 to 3141 1 to 564   tiling clone,   564/564
(100 %)
9 diff
(98.5 %id)
BF109016 pooled .b 2580 to 2987 408 to 1       408/408
(100 %)
0 diff
(100 %id)
AA419560 germinal center B cell .b 2629 to 2783 1 to 155       155/155
(100 %)
0 diff
(100 %id)
AA284172 germinal center B cell .b 2639 to 3014 376 to 1       376/376
(100 %)
0 diff
(100 %id)
FN100406 breast carcinoma .b 2649 to 2753 1 to 106       106/106
(100 %)
1 diff
(99.1 %id)
FN108335 breast carcinoma .b 2738 to 2804 1 to 66       66/67
(98 %)
2 diff
(97.1 %id)
AW769994 lymph node, lymphoma, follicular mixed small and largecell .b 2752 to 3034 285 to 3       283/285
(99 %)
0 diff
(100 %id)
FN146529 breast carcinoma .b 2765 to 2875 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
AV733504 pheochromocytoma .b 2767 to 3015 1 to 250       250/474
(52 %)
3 diff
(99.4 %id)
BE856744 pooled .b 2776 to 3205 442 to 13   AAA   430/430
(100 %)
1 diff
(99.8 %id)
FN161530 breast carcinoma .b 2868 to 2991 1 to 122       122/127
(96 %)
12 diff
(90.6 %id)
AW974020   .b 2929 to 3383 455 to 1     Submitted on the opposite strand 455/485
(93 %)
4 diff
(99.2 %id)
CR742052 breast .b 2931 to 3384 1 to 454   tiling clone, AAA   454/454
(100 %)
0 diff
(100 %id)
BQ232286 melanotic melanoma, skin .c 1 to 890 40 to 933 K36R S38A K86I E87* tiling clone,   894/942
(94 %)
29 diff
(97.0 %id)
CR993760 T-Lymphocytes .d 1 to 745 1 to 745 exact tiling clone,   745/745
(100 %)
0 diff
(100 %id)
DA938481 Spleen .e 1 to 597 2 to 598 C6R E73G tiling clone, capped   597/597
(100 %)
3 diff
(99.5 %id)
AI825878 colon, colon tumor, RER+ .f-u 1 to 634 633 to 1 exact tiling clone,   633/633
(100 %)
6 diff
(99.1 %id)
DB220284 trachea .f-u 18 to 577 2 to 561 exact tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
AA542999 ovary .f-u 290 to 536 1 to 247       247/281
(87 %)
6 diff
(97.9 %id)
BU657676 blood .g-u 1 to 610 7 to 616 exact tiling clone,   610/616
(99 %)
6 diff
(99.1 %id)
BU657468 blood .g-u 4 to 472 1 to 469       469/469
(100 %)
0 diff
(100 %id)
CD701789 normal nasopharynx .h-u 1 to 551 37 to 589 G24W D26* tiling clone,   561/589
(95 %)
6 diff
(99.0 %id)
DA931656 Spleen .h-u 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
AL698677 human skeletal muscle .h-u 6 to 531 1 to 526 R3C tiling clone,   526/526
(100 %)
1 diff
(99.9 %id)
BP349246 brain Gene NPAT, variant not shown         This clone was ignored    
DB356743 whole embryo, mainly head Gene NPAT, variant not shown              
AU118596 whole embryo, mainly head Gene NPAT, variant not shown       capped      
BC094769 Placenta, normal Gene NPAT, variant not shown       AAA Suspected internal deletion, this clone was ignored    
CF994137 Human Placenta, placenta Gene NPAT, variant not shown         Suspected internal deletion, this clone was ignored    
DB215009 trachea Gene NPAT, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI