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Gene NPAS2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
243 supporting clones for gene NPAS2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_002518.3   .a 1 to 4004 1 to 4004 exact RefSeq,   4004/4004
(100 %)
0 diff
(100 %id)
U77970   .a 1 to 2880 1 to 2880 K403T T489A S566L tiling clone,   2880/2880
(100 %)
6 diff
(99.8 %id)
DB461957 testis .a 28 to 486 1 to 465       465/465
(100 %)
3 diff
(99.4 %id)
DN999584   .a 31 to 657 1 to 627       627/627
(100 %)
5 diff
(99.3 %id)
BC072383 Lung, large cell carcinoma .a 34 to 3231 1 to 3198   tiling clone, available from MGC, AAA   3198/3198
(100 %)
2 diff
(100.0 %id)
BQ919534 large cell carcinoma, lung .a 35 to 769 1 to 742       742/962
(77 %)
12 diff
(98.8 %id)
BC051351 Lung, epidermoid carcinoma .a 37 to 3951 1 to 3915   tiling clone, available from MGC, AAA   3915/3915
(100 %)
5 diff
(99.9 %id)
BU528385 epidermoid carcinoma, cell line, lung .a 38 to 885 1 to 856       856/891
(96 %)
14 diff
(98.5 %id)
BF109415 pooled .a 68 to 641 1 to 579     Submitted on the opposite strand 579/579
(100 %)
4 diff
(99.4 %id)
U51625   .a 255 to 2163 4 to 1912       1909/1912
(99 %)
9 diff
(99.6 %id)
BC028107 Brain, fetal, whole pooled .a 258 to 2153 1 to 1896   available from MGC,   1896/1896
(100 %)
1 diff
(100.0 %id)
BX477073   .a 264 to 781 1 to 519       519/519
(100 %)
6 diff
(98.9 %id)
DA222371 brain .a 283 to 946 2 to 665   capped   664/664
(100 %)
1 diff
(99.9 %id)
BF589412 pooled .a 289 to 649 1 to 361     Submitted on the opposite strand 361/376
(96 %)
12 diff
(96.9 %id)
R58054   .a 495 to 669 1 to 175       175/175
(100 %)
0 diff
(100 %id)
CN267237 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 502 to 1208 1 to 706       706/706
(100 %)
1 diff
(99.9 %id)
BI060579 uterus_tumor .a 522 to 1146 652 to 28       625/652
(95 %)
11 diff
(98.4 %id)
BF911581 uterus_tumor .a 539 to 1071 533 to 1     Submitted on the opposite strand 533/533
(100 %)
12 diff
(97.8 %id)
CN267236 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 573 to 770 1 to 198       198/202
(98 %)
1 diff
(99.6 %id)
AK226093   .a 673 to 2918 1 to 2246   tiling clone,   2246/2246
(100 %)
1 diff
(100.0 %id)
BQ379872 uterus_tumor .a 771 to 1050 302 to 21       282/337
(83 %)
15 diff
(95.6 %id)
BI753646 brain .a 777 to 1611 1 to 826       831/860
(96 %)
18 diff
(98.0 %id)
TI_57216051   .a 777 to 1611 29 to 854       831/888
(93 %)
23 diff
(97.5 %id)
DA797679 brain .a 855 to 1423 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BM724652 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 906 to 1592 1 to 687       687/687
(100 %)
1 diff
(99.9 %id)
BQ955071 large cell carcinoma, lung .a 1032 to 1915 1 to 883       883/883
(100 %)
6 diff
(99.4 %id)
BG765324 melanotic melanoma, high MDR (cell line), skin .a 1036 to 1931 1 to 892       894/895
(99 %)
31 diff
(96.6 %id)
BG768972 melanotic melanoma, high MDR (cell line), skin .a 1036 to 1736 1 to 700       700/700
(100 %)
6 diff
(99.2 %id)
BE939053 testis_normal .a 1084 to 1478 459 to 69       391/463
(84 %)
10 diff
(97.9 %id)
DA141991 alzheimer cortex .a 1102 to 1657 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
BG118329 adenocarcinoma, cell line, Liver .a 1105 to 1902 1 to 795       795/797
(99 %)
26 diff
(96.8 %id)
BE933234 head_neck .a 1119 to 1558 1 to 435       435/439
(99 %)
17 diff
(96.2 %id)
DB243986 stomach, tumor tissue .a 1145 to 1541 165 to 561   capped   397/560
(70 %)
7 diff
(98.8 %id)
BF689775 melanotic melanoma, high MDR (cell line), skin .a 1223 to 1921 1 to 698       698/922
(75 %)
5 diff
(99.5 %id)
BG770495 melanotic melanoma, high MDR (cell line), skin .a 1223 to 2003 1 to 783       783/783
(100 %)
6 diff
(99.3 %id)
BG764052 melanotic melanoma, high MDR (cell line), skin .a 1223 to 1617 1 to 394       394/394
(100 %)
5 diff
(98.8 %id)
BE938265 testis_normal .a 1251 to 1522 35 to 305       271/305
(88 %)
11 diff
(96.4 %id)
BG489099 large cell carcinoma, lung .a 1251 to 2060 1 to 831       831/833
(99 %)
38 diff
(95.5 %id)
BM050276 epithelioid carcinoma cell line, Pancreas .a 1295 to 1832 1 to 570       497/571
(87 %)
39 diff
(93.2 %id)
DA280593 corpus callosum .a 1317 to 1890 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
CN267239 embryonic stem cells, DMSO-treated H9 cellline .a 1352 to 1971 1 to 621   tiling clone,   621/621
(100 %)
1 diff
(99.9 %id)
BF689961 melanotic melanoma, high MDR (cell line), skin .a 1425 to 2114 16 to 727       706/1212
(58 %)
40 diff
(96.7 %id)
TI_151729007   .a 1425 to 2161 777 to 44       734/1012
(72 %)
21 diff
(98.0 %id)
BF792167 adrenal cortex carcinoma, cell line, adrenal gland .a 1448 to 2148 1 to 699       699/699
(100 %)
3 diff
(99.6 %id)
BG767201 melanotic melanoma, high MDR (cell line), skin .a 1458 to 2144 1 to 724       674/724
(93 %)
8 diff
(98.9 %id)
R79423 placenta .a 1510 to 1778 1 to 272       272/328
(82 %)
15 diff
(95.5 %id)
R78961 placenta .a 1511 to 1803 1 to 297   fully sequenced,   295/295
(100 %)
10 diff
(96.7 %id)
BG763288 melanotic melanoma, high MDR (cell line), skin .a 1522 to 2221 1 to 700       700/702
(99 %)
2 diff
(99.8 %id)
AW263509 pooled .a 1562 to 2143 582 to 1       582/657
(88 %)
13 diff
(98.1 %id)
AI017409 Kidney .a 1565 to 2089 524 to 1       524/541
(96 %)
7 diff
(98.8 %id)
AW263520 pooled .a 1565 to 2089 525 to 1       525/528
(99 %)
7 diff
(98.7 %id)
AW081193 colon, moderately differentiated adenocarcinoma .a 1572 to 2155 585 to 1       585/631
(92 %)
10 diff
(98.5 %id)
AI889777 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1596 to 1898 301 to 1       301/301
(100 %)
5 diff
(98.4 %id)
T03422   .a 1678 to 2161 494 to 5       490/554
(88 %)
10 diff
(98.2 %id)
AI806017 pooled .a 1727 to 2161 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AA932899 Kidney .a 1728 to 2089 360 to 1       360/360
(100 %)
8 diff
(97.8 %id)
AI910525 pooled .a 1731 to 2143 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
R69843 placenta .a 1766 to 2085 323 to 1       323/365
(88 %)
10 diff
(97.3 %id)
R79424 placenta .a 1766 to 2089 333 to 1       333/358
(93 %)
14 diff
(96.1 %id)
R78870 placenta .a 1773 to 2089 324 to 1   fully sequenced,   324/324
(100 %)
11 diff
(96.7 %id)
CN267235 embryonic stem cells, cell lines H1, H7, andH9 .a 1814 to 2541 1 to 728       728/728
(100 %)
1 diff
(99.9 %id)
AW195441 Kidney .a 1921 to 2089 169 to 1       169/169
(100 %)
0 diff
(100 %id)
AI985153 Kidney .a 1951 to 2119 169 to 1       169/169
(100 %)
0 diff
(100 %id)
AI989735 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 2154 to 2575 1 to 422     Submitted on the opposite strand 422/422
(100 %)
0 diff
(100 %id)
AA885180 pooled .a 2155 to 2389 1 to 235     Submitted on the opposite strand 235/235
(100 %)
3 diff
(98.8 %id)
N81092 lung .a 2177 to 2362 1 to 186     Submitted on the opposite strand 186/214
(86 %)
5 diff
(97.7 %id)
AA885624 carcinoid, lung .a 2177 to 2461 1 to 286     Submitted on the opposite strand 286/286
(100 %)
1 diff
(99.7 %id)
T15961   .a 2177 to 2540 13 to 377     Submitted on the opposite strand 365/377
(96 %)
5 diff
(98.7 %id)
CD674280 eye, lens .a 2179 to 2709 1 to 531       531/531
(100 %)
0 diff
(100 %id)
BF941848 fibrotheoma, ovary .a 2185 to 2544 1 to 360     Submitted on the opposite strand 360/364
(98 %)
3 diff
(99.2 %id)
BE140366 head_neck .a 2214 to 2450 245 to 9     Submitted on the opposite strand 237/245
(96 %)
1 diff
(99.6 %id)
BF690034 melanotic melanoma, high MDR (cell line), skin .a 2392 to 3189 803 to 1       803/952
(84 %)
19 diff
(98.1 %id)
T27439   .a 2491 to 2746 1 to 258       258/258
(100 %)
6 diff
(97.7 %id)
T27444   .a 2491 to 2856 1 to 368       368/368
(100 %)
15 diff
(96.0 %id)
CA426824 cell lines, Chondrosarcoma .a 2521 to 3231 729 to 19   AAA   711/711
(100 %)
2 diff
(99.8 %id)
BG180991 adenocarcinoma, cell line, Prostate .a 2569 to 2948 105 to 488       384/488
(78 %)
11 diff
(97.8 %id)
BE829280 lung_tumor .a 2673 to 3086 1 to 416       416/416
(100 %)
9 diff
(97.9 %id)
AA361974   .a 2677 to 2954 1 to 279       279/282
(98 %)
10 diff
(96.5 %id)
AW959161   .a 2678 to 3099 1 to 432       432/524
(82 %)
30 diff
(94.3 %id)
BE829326 lung_tumor .a 2698 to 3082 1 to 385       385/389
(98 %)
4 diff
(99.0 %id)
BF359131 lung_tumor .a 2704 to 3076 34 to 406       373/406
(91 %)
6 diff
(98.6 %id)
BE829291 lung_tumor .a 2710 to 2975 1 to 273       273/279
(97 %)
5 diff
(98.3 %id)
AA402173   .a 2719 to 2962 1 to 243   fully sequenced,   243/243
(100 %)
3 diff
(98.8 %id)
CB159056 Liver .a 2722 to 3144 1 to 423       423/423
(100 %)
4 diff
(99.1 %id)
BE829265 lung_tumor .a 2751 to 3179 434 to 6       429/434
(98 %)
0 diff
(100 %id)
AV646311 corresponding non cancerous liver tissue .a 2770 to 3201 1 to 432     Submitted on the opposite strand 432/432
(100 %)
1 diff
(99.8 %id)
BE770762 prostate_tumor .a 2774 to 3181 415 to 10       406/415
(97 %)
0 diff
(100 %id)
T10707   .a 2774 to 3231 472 to 1       472/484
(97 %)
21 diff
(95.7 %id)
BE770736 prostate_tumor .a 2778 to 3183 410 to 5       406/410
(99 %)
0 diff
(100 %id)
BE829275 lung_tumor .a 2778 to 3179 410 to 11       400/410
(97 %)
0 diff
(100 %id)
BQ644172 hepatocellular carcinoma, cell line, Liver .a 2786 to 3358 1 to 579       579/1110
(52 %)
10 diff
(99.1 %id)
BE829309 lung_tumor .a 2806 to 3170 369 to 2       368/369
(99 %)
0 diff
(100 %id)
W16520 lung .a 2840 to 3325 1 to 479       479/479
(100 %)
9 diff
(98.2 %id)
BX103555 lung .a 2868 to 3231 379 to 15   AAA   365/365
(100 %)
1 diff
(99.8 %id)
H05993 whole brain .a 2881 to 3314 1 to 437       437/584
(74 %)
11 diff
(98.2 %id)
CK430900 eye, lacrimal gland .a 2908 to 3446 1 to 539       539/539
(100 %)
3 diff
(99.5 %id)
BG538577 lung .a 2927 to 3751 1 to 825       825/887
(93 %)
41 diff
(95.4 %id)
AA411982   .a 2932 to 3231 300 to 1   fully sequenced,   300/300
(100 %)
0 diff
(100 %id)
BG211096   .a 2986 to 3763 1 to 780       780/782
(99 %)
23 diff
(97.1 %id)
BF336927 colon .a 3023 to 3225 205 to 2       204/212
(96 %)
0 diff
(100 %id)
AA455445 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3033 to 3498 1 to 465       465/465
(100 %)
6 diff
(98.8 %id)
AA247562   .a 3038 to 3274 1 to 236       236/238
(99 %)
5 diff
(97.9 %id)
W07453 lung .a 3057 to 3231 196 to 19   AAA Submitted on the opposite strand 178/181
(98 %)
7 diff
(96.2 %id)
BM352365 Pancreas, Purified pancreatic islet .a 3073 to 3524 1 to 452       452/452
(100 %)
2 diff
(99.6 %id)
BF690315 melanotic melanoma, high MDR (cell line), skin .a 3143 to 3841 708 to 1       708/708
(100 %)
20 diff
(97.2 %id)
BE005418 breast_normal .a 3178 to 3389 217 to 6     Submitted on the opposite strand 212/217
(97 %)
0 diff
(100 %id)
BQ185772 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3193 to 3910 1 to 718       718/718
(100 %)
5 diff
(99.4 %id)
TI_151763911   .a 3193 to 3951 843 to 91   AAA   753/936
(80 %)
14 diff
(98.6 %id)
CA422348 Bone, Enchondroma cell line .a 3208 to 3893 704 to 19   AAA   686/686
(100 %)
3 diff
(99.6 %id)
CK005248 brain/CNS, Human Brain - Frontal Cortex .a 3210 to 3885 1 to 674       674/674
(100 %)
8 diff
(98.9 %id)
BE327689 carcinoid, lung .a 3257 to 3730 1 to 474     Submitted on the opposite strand 474/474
(100 %)
3 diff
(99.4 %id)
N47195 multiple sclerosis lesions .a 3258 to 3445 1 to 188   tiling clone,   188/188
(100 %)
0 diff
(100 %id)
AI904575 breast .a 3335 to 3546 1 to 212       212/212
(100 %)
3 diff
(98.6 %id)
BE907303 epithelioid carcinoma, Pancreas .a 3344 to 3894 578 to 19   AAA Submitted on the opposite strand 560/851
(65 %)
24 diff
(97.2 %id)
AA503290 ovary .a 3358 to 3670 1 to 314       314/314
(100 %)
6 diff
(98.1 %id)
BE005427 breast_normal .a 3377 to 3582 208 to 5     Submitted on the opposite strand 204/208
(98 %)
0 diff
(100 %id)
AI420598 Prostate .a 3534 to 3786 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AI682451 Prostate .a 3534 to 3786 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AW006693 Prostate .a 3534 to 3786 253 to 1       253/253
(100 %)
0 diff
(100 %id)
AI686953 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 3542 to 3669 128 to 1       128/128
(100 %)
0 diff
(100 %id)
N79986 lung .a 3649 to 4004 363 to 1       363/426
(85 %)
7 diff
(98.4 %id)
AA455967 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3778 to 4006 233 to 5       229/233
(98 %)
0 diff
(100 %id)
AK294733 brain .b 1 to 2724 2 to 2725 I133N T459A tiling clone,   2725/2725
(100 %)
3 diff
(99.9 %id)
DA214279 brain .b 1 to 539 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
BP199428 brain .b 38 to 624 1 to 587   tiling clone,   587/587
(100 %)
4 diff
(99.4 %id)
AU122689 mammary gland .c 1 to 825 2 to 826   tiling clone, capped   825/825
(100 %)
2 diff
(99.8 %id)
BG681567 skin, squamous cell carcinoma .c 732 to 1626 1 to 902   tiling clone,   902/903
(99 %)
20 diff
(97.8 %id)
DB362165 mammary gland .c 1583 to 2121 538 to 1   tiling clone,   538/565
(95 %)
13 diff
(97.7 %id)
BM751882 Ascites, stomach .d 1 to 550 1 to 550   tiling clone,   550/550
(100 %)
2 diff
(99.7 %id)
BM715533 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 123 to 893 1 to 765   tiling clone,   765/765
(100 %)
7 diff
(99.1 %id)
BG769520 melanotic melanoma, high MDR (cell line), skin .d 476 to 1305 1 to 834   tiling clone,   834/834
(100 %)
18 diff
(97.9 %id)
AA516418 colon .d 838 to 1335 1 to 498     Submitted on the opposite strand 498/498
(100 %)
5 diff
(99.0 %id)
AI457979 pooled .d 838 to 1304 1 to 467     Submitted on the opposite strand 467/467
(100 %)
3 diff
(99.4 %id)
TI_154003098   .d 838 to 1455 77 to 694     Submitted on the opposite strand 618/1058
(58 %)
12 diff
(98.9 %id)
CB854396 lung, Primary Lung Epithelial Cells .d 838 to 1508 1 to 670     Submitted on the opposite strand 670/671
(99 %)
5 diff
(99.3 %id)
BF055009 pooled .d 856 to 1379 1 to 524     Submitted on the opposite strand 524/524
(100 %)
1 diff
(99.9 %id)
BF477900 carcinoid, lung .d 860 to 1313 1 to 454     Submitted on the opposite strand 454/454
(100 %)
4 diff
(99.2 %id)
N30194 placenta .d 861 to 1414 1 to 556     Submitted on the opposite strand 556/556
(100 %)
15 diff
(97.4 %id)
AI310356 adenocarcinoma, colon .d 861 to 1310 1 to 450     Submitted on the opposite strand 450/450
(100 %)
0 diff
(100 %id)
AA401966 ovarian tumor, ovary .d 872 to 1307 1 to 436     Submitted on the opposite strand 436/436
(100 %)
1 diff
(99.8 %id)
AI242839 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 872 to 1277 1 to 406     Submitted on the opposite strand 406/406
(100 %)
1 diff
(99.8 %id)
AW008867 colon .d 872 to 1387 1 to 516     Submitted on the opposite strand 516/516
(100 %)
1 diff
(99.9 %id)
BI713762 Pancreas, Purified pancreatic islet .d 873 to 1516 664 to 21   AAA Submitted on the opposite strand 644/644
(100 %)
4 diff
(99.4 %id)
BI713498 Pancreas, Purified pancreatic islet .d 904 to 1342 1 to 440     Submitted on the opposite strand 440/440
(100 %)
4 diff
(99.1 %id)
BM673994 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 935 to 1519 603 to 19   tiling clone, AAA   585/585
(100 %)
0 diff
(100 %id)
AW513428 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e 1 to 173 173 to 1   tiling clone,   173/173
(100 %)
0 diff
(100 %id)
AW662905 pooled .e 3 to 436 434 to 1       434/434
(100 %)
0 diff
(100 %id)
ES313616 beard hair, skin .e 89 to 530 1 to 441   tiling clone,   441/562
(78 %)
8 diff
(98.6 %id)
TI_149278829   .e 429 to 1266 44 to 871   tiling clone, Submitted on the opposite strand 828/1219
(67 %)
28 diff
(97.8 %id)
AA476894 ovarian tumor, ovary .e 593 to 1111 518 to 1     Submitted on the opposite strand 518/518
(100 %)
3 diff
(99.5 %id)
AA580415 colon, colon tumor .e 647 to 1077 431 to 1       431/431
(100 %)
0 diff
(100 %id)
TI_154101488   .e 670 to 1110 527 to 87   AAA   441/798
(55 %)
1 diff
(99.9 %id)
CA441937 Chondrosarcoma, Left Pubic Bone .e 670 to 1110 459 to 19   tiling clone, AAA   441/460
(95 %)
1 diff
(99.8 %id)
AA580352 colon, colon tumor .e 699 to 1105 415 to 9       407/415
(98 %)
1 diff
(99.8 %id)
AA402086 ovarian tumor, ovary .e 772 to 1113 342 to 1   tiling clone, Submitted on the opposite strand 342/342
(100 %)
0 diff
(100 %id)
BX640699 human testis .f 1 to 7980 1 to 7980 T70A E101G tiling clone, available from DKFZ, AAA   7980/7980
(100 %)
21 diff
(99.8 %id)
BX507516   .f 1 to 561 1 to 561       561/561
(100 %)
2 diff
(99.7 %id)
BM927068 brain .f 5127 to 6095 1 to 991       991/1061
(93 %)
27 diff
(97.5 %id)
BF822266 kidney_tumor .f 5661 to 6126 475 to 4     Submitted on the opposite strand 472/475
(99 %)
0 diff
(100 %id)
BF738861 bladder_tumor .f 6490 to 6779 294 to 4     Submitted on the opposite strand 291/294
(98 %)
0 diff
(100 %id)
BX507517   .f 7375 to 7983 609 to 1       609/609
(100 %)
1 diff
(99.9 %id)
BF809634 colon_ins .g 1 to 481 1 to 481   tiling clone,   481/481
(100 %)
9 diff
(98.2 %id)
BF809625 colon_ins .g 21 to 484 12 to 475   tiling clone,   464/475
(97 %)
7 diff
(98.6 %id)
BF809602 colon_ins .g 56 to 434 14 to 393       380/393
(96 %)
11 diff
(97.3 %id)
BM928450 brain .g 228 to 1193 1 to 985       985/1029
(95 %)
35 diff
(96.6 %id)
AK128586 trachea .g 293 to 4126 1 to 3834 exact tiling clone, available from FLJ,   3834/3834
(100 %)
0 diff
(100 %id)
DB228912 trachea .g 294 to 878 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
CV335936 colon_ins .g 308 to 641 1 to 336       336/336
(100 %)
29 diff
(91.4 %id)
BQ325858 colon_ins .g 346 to 648 15 to 318       304/318
(95 %)
6 diff
(98.2 %id)
BF809441 colon_ins .g 367 to 740 394 to 21     Submitted on the opposite strand 374/396
(94 %)
0 diff
(100 %id)
CV335941 colon_ins .g 456 to 740 309 to 25     Submitted on the opposite strand 285/309
(92 %)
0 diff
(100 %id)
CN292862 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 920 to 1284 8 to 372       365/372
(98 %)
6 diff
(98.4 %id)
BI768980 pooled lung and spleen .g 980 to 1821 1 to 844       844/845
(99 %)
12 diff
(98.6 %id)
TI_57181800   .g 980 to 1821 37 to 880       844/881
(95 %)
12 diff
(98.7 %id)
BE467728 carcinoid, lung .g 1192 to 1672 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AK091939 Kidney .g 1483 to 4129 1 to 2648 exact available from FLJ,   2648/2648
(100 %)
3 diff
(99.9 %id)
DA633108 Kidney .g 1484 to 2079 2 to 603   capped   602/602
(100 %)
6 diff
(99.1 %id)
AW603171 colon_normal .g 2167 to 2298 1 to 132       132/132
(100 %)
4 diff
(97.0 %id)
BQ434781 melanotic melanoma, skin .g 3352 to 4076 758 to 20   AAA Submitted on the opposite strand 739/778
(94 %)
20 diff
(97.5 %id)
H26181 breast .g 3356 to 3785 1 to 434   fully sequenced, Submitted on the opposite strand 434/434
(100 %)
13 diff
(97.1 %id)
BU689687 Human Lung Epithelial cells, lung .g 3382 to 4129 764 to 17   AAA   748/748
(100 %)
2 diff
(99.8 %id)
BU689848 Human Lung Epithelial cells, lung .g 3387 to 4133 765 to 19   tiling clone, AAA   747/747
(100 %)
0 diff
(100 %id)
BU623549 cell lines, Enchondroma .g 3411 to 4129 737 to 19   AAA   719/735
(97 %)
0 diff
(100 %id)
BU623817 cell lines, Enchondroma .g 3411 to 4129 737 to 19   AAA   719/732
(98 %)
0 diff
(100 %id)
TI_149314548   .g 3416 to 4133 805 to 90   AAA   716/950
(75 %)
8 diff
(99.2 %id)
CB306173 lung, Primary Lung Cystic Fibrosis EpithelialCells .g 3428 to 4133 722 to 19   AAA   704/704
(100 %)
4 diff
(99.5 %id)
AW770698 carcinoid, lung .g 3485 to 4129 645 to 1       645/648
(99 %)
20 diff
(97.0 %id)
CK822364 Pancreas, Purified pancreatic islet .g 3549 to 4131 589 to 7     Submitted on the opposite strand 583/589
(98 %)
0 diff
(100 %id)
DB349887 trachea .g 3561 to 4126 566 to 1       566/566
(100 %)
0 diff
(100 %id)
AW000928 Kidney .g 3572 to 4076 506 to 1       506/506
(100 %)
1 diff
(99.9 %id)
DB320921 Kidney .g 3573 to 4127 557 to 3       555/557
(99 %)
0 diff
(100 %id)
BF433835 carcinoid, lung .g 3590 to 4129 546 to 5       542/546
(99 %)
0 diff
(100 %id)
AI743090 pooled .g 3594 to 4129 547 to 12   AAA   536/536
(100 %)
2 diff
(99.7 %id)
N48578 multiple sclerosis lesions .g 3604 to 4076 477 to 2       476/477
(99 %)
0 diff
(100 %id)
AI453552 pooled .g 3620 to 4076 456 to 1       456/456
(100 %)
2 diff
(99.6 %id)
AI417835 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 3648 to 4129 482 to 1       482/482
(100 %)
0 diff
(100 %id)
DB527379 testis .g 3655 to 4129 1 to 475     Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
BE048665 Kidney .g 3659 to 4076 426 to 9       418/426
(98 %)
0 diff
(100 %id)
BE048672 Kidney .g 3659 to 4076 424 to 7       418/424
(98 %)
0 diff
(100 %id)
DB541932 hippocampus .g 3662 to 4129 1 to 469     Submitted on the opposite strand 469/469
(100 %)
2 diff
(99.6 %id)
AI742263 pooled .g 3669 to 4132 465 to 1       465/465
(100 %)
2 diff
(99.6 %id)
AA931180 Kidney .g 3671 to 4076 405 to 1       405/405
(100 %)
3 diff
(99.3 %id)
AI590353 Kidney .g 3674 to 4075 418 to 16   AAA   403/403
(100 %)
2 diff
(99.6 %id)
AI363340 brain, glioblastoma (pooled) .g 3689 to 4129 441 to 1       441/441
(100 %)
0 diff
(100 %id)
BM352050 Pancreas, Purified pancreatic islet .g 3705 to 4128 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AW611843 Kidney .g 3706 to 4076 372 to 2       371/372
(99 %)
0 diff
(100 %id)
H20116 brain .g 3714 to 4089 8 to 387       380/402
(94 %)
16 diff
(96.1 %id)
H22640 brain .g 3714 to 4127 7 to 421       415/421
(98 %)
6 diff
(98.6 %id)
H26182 breast .g 3755 to 4122 377 to 8   fully sequenced, Submitted on the opposite strand 370/377
(98 %)
4 diff
(99.0 %id)
AI168775 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 3907 to 4129 241 to 19   AAA   223/223
(100 %)
0 diff
(100 %id)
BG717372 testis .h 1 to 775 1 to 774 G50E K51V E52S V53A S54Q ... tiling clone,   774/777
(99 %)
12 diff
(98.5 %id)
AW973590   .h 14 to 337 139 to 462   tiling clone,   324/650
(49 %)
7 diff
(99.0 %id)
AA553904 colon, tumor .h 14 to 240 209 to 435     Submitted on the opposite strand 227/435
(52 %)
6 diff
(98.7 %id)
BF827084 head_normal .i 1 to 513 28 to 539   tiling clone,   514/541
(95 %)
9 diff
(98.4 %id)
BM721660 eye, fetal eye .i 39 to 465 1 to 427   tiling clone,   427/427
(100 %)
1 diff
(99.8 %id)
BM677263 eye, fetal eye .i 572 to 931 378 to 19   tiling clone, AAA   360/360
(100 %)
0 diff
(100 %id)
AK095806 brain .j 1 to 2032 2 to 2033 F77S R128C I164V C169R tiling clone, available from FLJ,   2033/2033
(100 %)
9 diff
(99.6 %id)
DA530406 brain .j 1 to 617 2 to 618   capped   617/617
(100 %)
4 diff
(99.4 %id)
DB317662 brain .j 1477 to 2032 556 to 1       556/556
(100 %)
1 diff
(99.9 %id)
AW043721 pooled .k 1 to 542 1 to 542 Q2R P3R L165X tiling clone, Submitted on the opposite strand 542/542
(100 %)
3 diff
(99.5 %id)
DA187683 amygdala .l 1 to 551 2 to 553 H24R R93W tiling clone, capped   552/552
(100 %)
5 diff
(99.1 %id)
AA314507 colon .m-u 1 to 311 1 to 311   tiling clone,   311/311
(100 %)
4 diff
(98.8 %id)
R73925 breast .m-u 2202 to 2583 397 to 14   tiling clone, Submitted on the opposite strand 384/398
(96 %)
0 diff
(100 %id)
BM727776 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 2333 to 2774 1 to 442   fully sequenced,   442/442
(100 %)
0 diff
(100 %id)
AW612649 carcinoid, lung .m-u 2474 to 3015 1 to 542   tiling clone, Submitted on the opposite strand 542/542
(100 %)
0 diff
(100 %id)
BM681420 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .m-u 2773 to 3466 712 to 19   tiling clone, fully sequenced, AAA   694/694
(100 %)
1 diff
(99.9 %id)
AK026791 Human lung .n-u 1 to 1889 1 to 1889 S85I C97Y tiling clone, available from FLJ, AAA   1889/1889
(100 %)
6 diff
(99.7 %id)
CA391606 eye, RPE/choroid .n-u 383 to 1057 21 to 695   tiling clone,   675/695
(97 %)
6 diff
(99.2 %id)
CN267238 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .o 1 to 476 1 to 476 exact tiling clone,   476/476
(100 %)
0 diff
(100 %id)
DB083889 testis .p 1 to 541 2 to 543 E33G I34N C35L D36* tiling clone, capped   542/542
(100 %)
2 diff
(99.7 %id)
AA609301   .q 1 to 393 398 to 6 exact tiling clone,   393/398
(98 %)
0 diff
(100 %id)
BE182756 head_neck .r 1 to 290 319 to 16 L3A I4H K5T E6K L7S ... tiling clone, Submitted on the opposite strand 302/340
(88 %)
11 diff
(96.8 %id)
R76969 placenta .r 179 to 728 1 to 561   tiling clone,   561/561
(100 %)
24 diff
(95.8 %id)
R66025 placenta .r 192 to 633 1 to 456   tiling clone,   456/460
(99 %)
22 diff
(95.3 %id)
BC084565 Lung, epidermoid carcinoma .s-u 1 to 2258 3463 to 1211   tiling clone, available from MGC, AAA Submitted on the opposite strand 2253/4257
(52 %)
0 diff
(100 %id)
DA832801 placenta .s-u 1145 to 1873 2 to 738   to resequence, capped   737/740
(99 %)
13 diff
(98.3 %id)
BQ082190 stomach .s-u 1196 to 1793 1 to 598       598/598
(100 %)
1 diff
(99.9 %id)
BF920565 nervous_tumor .s-u 1213 to 1681 469 to 3     Submitted on the opposite strand 467/469
(99 %)
0 diff
(100 %id)
BI050255 placenta_normal .s-u 1237 to 1694 1 to 464       464/464
(100 %)
27 diff
(94.2 %id)
BX095454 placenta .s-u 1629 to 2256 29 to 656   AAA   628/656
(95 %)
6 diff
(99.1 %id)
R81604 placenta .s-u 1638 to 1998 1 to 376   fully sequenced,   376/376
(100 %)
10 diff
(97.4 %id)
TI_57170790   .s-u 1652 to 2246 28 to 623       596/825
(72 %)
7 diff
(99.2 %id)
BI830101 brain, medulla .s-u 1653 to 2246 1 to 595   tiling clone,   595/797
(74 %)
7 diff
(99.2 %id)
AI928098 2 pooled tumors (clear cell type), Kidney .s-u 1721 to 2258 541 to 4       538/541
(99 %)
0 diff
(100 %id)
AI347338 colon, colon tumor, RER+ .s-u 1868 to 2256 409 to 21   AAA   389/389
(100 %)
1 diff
(99.8 %id)
R81348 placenta .s-u 1968 to 2229 262 to 1   fully sequenced,   262/262
(100 %)
1 diff
(99.7 %id)
DB379176 placenta .s-u 2587 to 3086 503 to 5 L3X S5X L17X M77W V78* tiling clone, to resequence,   499/503
(99 %)
0 diff
(100 %id)
BX957038   .t-u 1 to 691 1 to 690 M77W V78* tiling clone,   690/690
(100 %)
5 diff
(99.3 %id)
DA364787 subthalamic nucleus .u-u 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DA378751 thalamus .va-u 1 to 563 2 to 562 exact tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
BX952805   .vb-u 1 to 360 1 to 360 exact tiling clone,   360/360
(100 %)
1 diff
(99.8 %id)
AV706247 adrenal gland Gene NPAS2, variant not shown         Suspected internal deletion, this clone was ignored    
AK091665 brain Gene NPAS2, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB317206 brain Gene NPAS2, variant not shown         Suspected internal deletion, this clone was ignored    
DA520814 brain Gene NPAS2, variant not shown       capped Suspected internal deletion, this clone was ignored    
BE615706 adenocarcinoma, Pancreas Gene NPAS2, variant not shown         Suspected internal deletion, this clone was ignored    
BE615373 adenocarcinoma, Pancreas Gene NPAS2, variant not shown         Suspected internal deletion, this clone was ignored    
BQ941752 large cell carcinoma, lung Gene NPAS2, variant not shown         Suspected internal deletion, this clone was ignored    
DB378737 placenta Gene NPAS2, variant not shown         This clone was ignored    
AU138774 placenta Gene NPAS2, variant not shown       capped This clone was ignored    
DB044987 testis Gene NPAS2, variant not shown       capped This clone was ignored    
DB338131 testis Gene NPAS2, variant not shown         This clone was ignored    
TI_149284482   Gene NPAS2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BM984445 lung, Primary Lung Epithelial Cells Gene NPAS2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u, .o, .p, .q, .r, .s-u, .t-u, .u-u, .va-u, .vb-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI