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Gene NLGN4YTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
104 supporting clones for gene NLGN4Y back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AX773941   .a 1 to 5331 8 to 5338 exact tiling clone,   5331/5331
(100 %)
0 diff
(100 %id)
AK295117 brain .b 1 to 3003 1 to 3003 exact tiling clone,   3003/3003
(100 %)
0 diff
(100 %id)
DC324669 brain .b 1 to 594 1 to 594       594/594
(100 %)
0 diff
(100 %id)
DA712674   .b 2940 to 3517 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BF592125 Kidney .b 3100 to 3337 238 to 1       238/239
(99 %)
0 diff
(100 %id)
TI_153955590   .b 3214 to 3737 81 to 604   tiling clone,   524/528
(99 %)
7 diff
(98.7 %id)
CX786068 human embryonic stem cells .b 3526 to 4314 1 to 788   tiling clone,   788/788
(100 %)
1 diff
(99.9 %id)
BF060948 pooled .b 3605 to 4123 534 to 16   AAA   519/519
(100 %)
0 diff
(100 %id)
CD108831 brain, Pituitary .b 3669 to 3986 1 to 318   AAA   318/318
(100 %)
0 diff
(100 %id)
BU727218 eye, eye anterior segment .b 3674 to 4069 414 to 19   AAA   396/396
(100 %)
0 diff
(100 %id)
TI_149287533   .b 4443 to 5380 1015 to 84   tiling clone, AAA   932/1124
(82 %)
17 diff
(98.5 %id)
DB571650 hypothalamus .b 4652 to 5380 1 to 729   tiling clone, Submitted on the opposite strand 729/729
(100 %)
1 diff
(99.9 %id)
BM972838 lung .b 4666 to 5380 734 to 19   AAA   716/716
(100 %)
2 diff
(99.8 %id)
BE857978 pooled .b 4698 to 5167 470 to 1       470/470
(100 %)
0 diff
(100 %id)
BQ006611 Chondrosarcoma, Left Pelvis .b 4756 to 5380 641 to 19   AAA   623/623
(100 %)
2 diff
(99.7 %id)
AI807783 pooled .b 4843 to 5156 314 to 1       314/314
(100 %)
0 diff
(100 %id)
EC550952 Prostate .b 4855 to 4946 1 to 92       92/92
(100 %)
5 diff
(94.6 %id)
BM722570 eye, fetal eye .b 4948 to 5549 1 to 602   tiling clone,   602/602
(100 %)
0 diff
(100 %id)
EC468650 Prostate .b 4951 to 5043 1 to 93       93/97
(95 %)
1 diff
(99.0 %id)
BM679221 eye, fetal eye .b 6127 to 6733 621 to 14   tiling clone,   608/621
(97 %)
0 diff
(100 %id)
DA331293 hippocampus .c 1 to 571 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
BX537428 fetal kidney .c 461 to 5770 1 to 5310 Y203C available from DKFZ, AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base) 5310/5310
(100 %)
3 diff
(100.0 %id)
NR_028319.1   .c 462 to 6092 1 to 5631 exact RefSeq, tiling clone,   5631/5631
(100 %)
0 diff
(100 %id)
AF376804   .d 1 to 5160 8 to 5167 exact tiling clone,   5160/5160
(100 %)
0 diff
(100 %id)
NM_014893.4   .d 1 to 5402 8 to 5409 exact RefSeq,   5402/5402
(100 %)
0 diff
(100 %id)
TI_1243017595   .d 142 to 871 27 to 756     Submitted on the opposite strand 730/1248
(58 %)
7 diff
(99.5 %id)
TI_1243017597   .d 142 to 1245 37 to 1132     Submitted on the opposite strand 1096/1254
(87 %)
14 diff
(98.9 %id)
TI_1243022009   .d 142 to 680 105 to 644     Submitted on the opposite strand 540/644
(83 %)
6 diff
(99.1 %id)
TI_1243023419   .d 142 to 1300 37 to 1181     Submitted on the opposite strand 1145/1248
(91 %)
22 diff
(98.3 %id)
TI_1243021995   .d 142 to 681 102 to 640     Submitted on the opposite strand 539/640
(84 %)
6 diff
(99.1 %id)
TI_1243023445   .d 142 to 871 41 to 770     Submitted on the opposite strand 730/1291
(56 %)
7 diff
(99.5 %id)
BC113525 Brain, cerebellum, PCR rescued clones .d 167 to 2725 1 to 2559 exact     2559/2559
(100 %)
0 diff
(100 %id)
BC113551 Brain, cerebellum, PCR rescued clones .d 167 to 2730 1 to 2564 exact     2564/2564
(100 %)
0 diff
(100 %id)
TI_1243021999   .d 293 to 1058 800 to 36       765/800
(95 %)
13 diff
(98.4 %id)
AA578623   .d 336 to 578 1 to 243       243/243
(100 %)
1 diff
(99.6 %id)
DB500493 hypothalamus .d 470 to 871 1 to 402       402/727
(55 %)
1 diff
(99.9 %id)
TI_1243021987   .d 493 to 1058 600 to 35       566/600
(94 %)
5 diff
(99.2 %id)
TI_1243017755   .d 619 to 1830 4 to 1212       1209/1261
(95 %)
33 diff
(97.4 %id)
TI_1243017749   .d 627 to 1825 8 to 1191       1184/1252
(94 %)
29 diff
(97.7 %id)
NR_028318.1   .e 1 to 5079 1 to 5079 exact RefSeq, tiling clone,   5079/5079
(100 %)
0 diff
(100 %id)
AB023168 brain .e 145 to 5079 1 to 4935 exact available from KIAA,   4935/4935
(100 %)
1 diff
(100.0 %id)
TI_1243022011   .e 563 to 1155 601 to 7       595/602
(98 %)
0 diff
(100 %id)
TI_1243021989   .e 681 to 1155 478 to 5       474/478
(99 %)
1 diff
(99.8 %id)
AL120487 amygdala .e 827 to 1328 1 to 502       502/502
(100 %)
0 diff
(100 %id)
TI_1243022007   .e 961 to 1547 598 to 13       586/600
(97 %)
0 diff
(100 %id)
TI_1243022015   .e 998 to 1554 560 to 5       556/560
(99 %)
3 diff
(99.5 %id)
CD652389 Embryonic Stem cells .e 1166 to 1936 12 to 780       769/845
(91 %)
17 diff
(98.0 %id)
TI_1243017751   .e 1184 to 2346 14 to 1164       1151/1274
(90 %)
18 diff
(98.6 %id)
TI_1243017745   .e 1186 to 2251 18 to 1082       1065/1254
(84 %)
10 diff
(99.3 %id)
TI_1243023035   .e 1243 to 2407 1208 to 53     Submitted on the opposite strand 1156/1261
(91 %)
13 diff
(99.0 %id)
TI_1243023061   .e 1243 to 2416 1214 to 51     Submitted on the opposite strand 1164/1286
(90 %)
29 diff
(97.8 %id)
TI_1243017591   .e 1297 to 2407 1156 to 50     Submitted on the opposite strand 1107/1266
(87 %)
9 diff
(99.3 %id)
TI_1243017593   .e 1367 to 2407 1081 to 50     Submitted on the opposite strand 1032/1235
(83 %)
13 diff
(99.0 %id)
TI_1243022003   .e 1395 to 2073 681 to 4       678/681
(99 %)
4 diff
(99.5 %id)
TI_1243021983   .e 1522 to 2075 557 to 3       555/606
(91 %)
0 diff
(100 %id)
AA187847   .e 1541 to 2113 1 to 573       573/573
(100 %)
5 diff
(99.2 %id)
DA205955 brain .e 1726 to 2300 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA300828 hippocampus .e 1918 to 2497 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
TI_1243017747   .e 1966 to 2407 11 to 452       442/1269
(34 %)
1 diff
(100.0 %id)
TI_1243017753   .e 1966 to 2416 7 to 458       452/1260
(35 %)
7 diff
(99.5 %id)
AA558153 bone marrow, stem cells .e 2433 to 2729 1 to 297       297/303
(98 %)
7 diff
(97.7 %id)
AA181935   .e 4594 to 5077 489 to 1       489/489
(100 %)
10 diff
(98.0 %id)
AX773943   .f 1 to 5453 8 to 5460 exact tiling clone,   5453/5453
(100 %)
0 diff
(100 %id)
BX280378 pooled pancreas and spleen .f 344 to 833 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
DC372575   .g 1 to 525 1 to 525   tiling clone,   525/525
(100 %)
0 diff
(100 %id)
DC360504   .g 5 to 480 12 to 487       476/476
(100 %)
0 diff
(100 %id)
DC334014 hippocampus .g 10 to 483 1 to 474       474/474
(100 %)
0 diff
(100 %id)
DC343342 thalamus .g 10 to 676 1 to 668       668/668
(100 %)
1 diff
(99.9 %id)
DC333937 hippocampus .g 16 to 480 1 to 465       465/465
(100 %)
0 diff
(100 %id)
DC328576 corpus callosum .g 17 to 557 13 to 553       541/541
(100 %)
0 diff
(100 %id)
DR000354 fetal brain .g 18 to 635 9 to 625       617/625
(98 %)
9 diff
(98.6 %id)
CD654789 Embryonic Stem cells .g 30 to 822 9 to 801   tiling clone,   793/802
(98 %)
20 diff
(97.6 %id)
DN990672 brain, whole brain .g 44 to 663 9 to 628       620/628
(98 %)
6 diff
(99.1 %id)
DC320627 brain .g 146 to 689 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
NM_001164238.1   .g 346 to 1227 1 to 882 exact RefSeq,   882/882
(100 %)
0 diff
(100 %id)
BF222878 pooled germ cell tumors .g 506 to 1227 726 to 5   tiling clone,   722/727
(99 %)
19 diff
(97.4 %id)
BC032567 Pancreas, Spleen, adult pooled .g 543 to 1221 1 to 679   tiling clone, available from MGC, AAA   679/679
(100 %)
1 diff
(99.9 %id)
BI833967 pooled pancreas and spleen .g 543 to 1222 1 to 686   available from MGC,   686/721
(95 %)
12 diff
(98.4 %id)
BI834043 pooled pancreas and spleen .g 543 to 1221 1 to 676   AAA   676/676
(100 %)
4 diff
(99.5 %id)
TI_57164367   .g 543 to 1221 35 to 710   AAA   676/710
(95 %)
7 diff
(99.1 %id)
TI_57164441   .g 543 to 1222 64 to 749       686/888
(77 %)
16 diff
(98.2 %id)
BE465446 Kidney .g 664 to 1227 565 to 2       564/565
(99 %)
0 diff
(100 %id)
CV030746 mixed .g 811 to 1214 1 to 404       404/575
(70 %)
1 diff
(99.9 %id)
DC416246 trachea .h 1 to 571 1 to 571 exact tiling clone,   571/571
(100 %)
0 diff
(100 %id)
DC418600 trachea .h 169 to 687 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
BX510263   .h 174 to 714 1 to 541       541/541
(100 %)
5 diff
(99.1 %id)
BX492169   .h 175 to 696 9 to 530       522/530
(98 %)
3 diff
(99.5 %id)
DC349521   .h 190 to 738 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC339438 thalamus .h 282 to 842 1 to 561   tiling clone,   561/561
(100 %)
0 diff
(100 %id)
BQ002163 Chondrosarcoma, Left Pelvis .i-u 1 to 563 580 to 18   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 563/580
(97 %)
0 diff
(100 %id)
BX105854 Prostate .i-u 533 to 1034 1 to 502   tiling clone,   502/502
(100 %)
0 diff
(100 %id)
AI597685 Prostate .i-u 780 to 1269 490 to 1   tiling clone,   490/490
(100 %)
1 diff
(99.8 %id)
BG431346 Kidney .j-u 1 to 632 1 to 633 exact tiling clone,   633/779
(81 %)
7 diff
(99.2 %id)
DC334595 hippocampus .k 1 to 530 1 to 531 exact tiling clone,   531/531
(100 %)
1 diff
(99.9 %id)
DN989904 brain, whole brain .l-u 1 to 558 1 to 558 G75X tiling clone,   558/558
(100 %)
5 diff
(99.2 %id)
DC321125 brain .m 1 to 525 1 to 525 exact tiling clone,   525/525
(100 %)
0 diff
(100 %id)
DC368716   .n 1 to 561 1 to 561 exact tiling clone,   561/561
(100 %)
0 diff
(100 %id)
CK001495 brain/CNS, Bulk tissue from Human Spinal cord .o-u 1 to 632 1 to 632 exact tiling clone,   632/633
(99 %)
6 diff
(99.1 %id)
DA709709   .p 1 to 541 2 to 542 exact tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
AI953632 Kidney .q-u 1 to 538 556 to 19 N43H tiling clone,   538/556
(96 %)
0 diff
(100 %id)
AL119223 amygdala Gene NLGN4Y, variant not shown              
BF835374 head_neck Gene NLGN4Y, variant not shown              
AU311451 neuroblastoma Gene NLGN4Y, variant not shown              
AU311450 neuroblastoma Gene NLGN4Y, variant not shown              
AW304721 brain, three pooled meningiomas Gene NLGN4Y, variant not shown              
BE968415 heart Gene NLGN4Y, variant not shown       AAA Possibly primed on the genome, locally A rich (33/34 A in genome downstream of last aligned base)    
BE969234 heart Gene NLGN4Y, variant not shown         Possibly primed on the genome, locally A rich (33/34 A in genome downstream of last aligned base)    
BQ924832 sciatic nerve Gene NLGN4Y, variant not shown       AAA Possibly primed on the genome, locally A rich (19/22 A in genome downstream of last aligned base)    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u, .k, .l-u, .m, .n, .o-u, .p, .q-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C