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Gene NKX3-1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene NKX3-1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF247704   .a 1 to 3259 1 to 3266 exact tiling clone,   3209/3266
(98 %)
76 diff
(97.7 %id)
NM_006167.3   .a 1 to 3281 1 to 3281 exact RefSeq,   3281/3281
(100 %)
0 diff
(100 %id)
EC573868 Prostate .a 10 to 136 1 to 128       128/128
(100 %)
2 diff
(98.5 %id)
BC074863 Lung, PCR rescued clones .a 17 to 775 1 to 759 exact available from MGC,   759/759
(100 %)
0 diff
(100 %id)
BC074864 Lung, PCR rescued clones .a 17 to 775 1 to 759 exact available from MGC,   759/759
(100 %)
0 diff
(100 %id)
U80669 Prostate .a 20 to 1451 1 to 1428 E85D S196F Y224H tiling clone,   1428/1428
(100 %)
13 diff
(99.1 %id)
DR005328 Prostate .a 28 to 626 1 to 600       600/600
(100 %)
2 diff
(99.7 %id)
U91540   .a 49 to 747 1 to 699       699/705
(99 %)
1 diff
(99.9 %id)
BF514063   .a 177 to 705 1 to 529     Submitted on the opposite strand 529/529
(100 %)
1 diff
(99.9 %id)
AF249670 Prostate .a 208 to 909 23 to 725   tiling clone,   703/725
(96 %)
8 diff
(98.9 %id)
EC534730 Prostate .a 220 to 319 1 to 100       100/102
(98 %)
2 diff
(98.1 %id)
EC450391 Prostate .a 225 to 328 1 to 103       103/103
(100 %)
1 diff
(99.1 %id)
AA492170 Prostate .a 472 to 887 415 to 5       411/415
(99 %)
0 diff
(100 %id)
AF249672 primary prostate tumor xenograft .b 1 to 720 4 to 724 G2S Q62R tiling clone,   721/724
(99 %)
8 diff
(98.9 %id)
BX641277   .b 585 to 1095 1 to 507   tiling clone,   507/507
(100 %)
4 diff
(99.3 %id)
AI989272   .b 800 to 1338 1 to 537   tiling clone,   537/537
(100 %)
4 diff
(99.3 %id)
BG604246 acute monocytic leukemia .b 891 to 1526 9 to 646       638/663
(96 %)
16 diff
(97.6 %id)
BF370053 prostate_normal .b 1216 to 1553 1 to 338   tiling clone,   338/348
(97 %)
3 diff
(99.2 %id)
BF372292 prostate_tumor .b 1248 to 1543 32 to 328       297/337
(88 %)
5 diff
(98.6 %id)
BQ372979 prostate_tumor .b 1257 to 1649 1 to 388       388/399
(97 %)
31 diff
(92.3 %id)
BF371234 prostate_normal .b 1281 to 1615 1 to 329       329/329
(100 %)
13 diff
(96.1 %id)
BQ372870 prostate_tumor .b 1284 to 1639 24 to 374       351/431
(81 %)
8 diff
(98.2 %id)
BP326960 prostata .b 1293 to 1879 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BF373215 prostate_tumor .b 1295 to 1566 6 to 279       274/280
(97 %)
20 diff
(92.9 %id)
CF140491 CNCAP(3)T-225 cell line, Prostate .b 1314 to 1802 1 to 486   tiling clone,   486/486
(100 %)
5 diff
(99.0 %id)
CF140563 CNCAP(3)T-225 cell line, Prostate .b 1314 to 1745 1 to 429       429/429
(100 %)
6 diff
(98.7 %id)
TI_154171006   .b 1318 to 1911 87 to 680       594/935
(63 %)
21 diff
(97.8 %id)
TI_154171067   .b 1318 to 1903 88 to 678       591/1265
(46 %)
27 diff
(97.9 %id)
BQ372868 prostate_tumor .b 1457 to 1701 1 to 244       244/249
(97 %)
33 diff
(86.8 %id)
AA604968   .b 1471 to 1576 8 to 113       106/114
(92 %)
1 diff
(99.2 %id)
BE772885 prostate_tumor .b 1545 to 1906 362 to 2   tiling clone,   361/364
(99 %)
0 diff
(100 %id)
BF373221 prostate_tumor .b 1562 to 1886 339 to 8       332/352
(94 %)
6 diff
(98.3 %id)
CF140015 CNCAP(3)T-225 cell line, Prostate .b 1565 to 1811 20 to 266       247/266
(92 %)
6 diff
(97.8 %id)
TI_154170417   .b 1565 to 2206 90 to 732       643/860
(74 %)
61 diff
(93.0 %id)
AI914133 carcinoid, lung .b 1583 to 2040 1 to 454     Submitted on the opposite strand 454/454
(100 %)
9 diff
(98.1 %id)
BQ373064 prostate_tumor .b 1636 to 2017 386 to 1       386/386
(100 %)
23 diff
(94.1 %id)
BE772782 prostate_tumor .b 1682 to 2139 488 to 32       457/488
(93 %)
0 diff
(100 %id)
AI989273   .b 1692 to 2254 1 to 563       563/563
(100 %)
2 diff
(99.7 %id)
AA640716   .b 1694 to 2039 26 to 371       346/371
(93 %)
6 diff
(98.4 %id)
BX102941   .b 1709 to 2450 1 to 742   tiling clone,   742/742
(100 %)
1 diff
(99.9 %id)
AA442287   .b 1709 to 2164 1 to 456       456/456
(100 %)
0 diff
(100 %id)
CF141065 CNCAP(3)T-225 cell line, Prostate .b 1716 to 2049 1 to 334       334/334
(100 %)
4 diff
(98.9 %id)
CF145380 CNCAP(3)T-225 cell line, Prostate .b 1716 to 2435 1 to 720       720/725
(99 %)
7 diff
(99.1 %id)
CF122460 CNCAP(3)T-225 cell line, Prostate .b 1717 to 2452 8 to 743       736/743
(99 %)
6 diff
(99.2 %id)
TI_154182043   .b 1717 to 2503 70 to 856       787/788
(99 %)
5 diff
(99.4 %id)
TI_154171759   .b 1723 to 2298 80 to 666       587/918
(63 %)
33 diff
(96.5 %id)
TI_154177589   .b 1723 to 2523 68 to 867       800/805
(99 %)
7 diff
(99.2 %id)
BE839122 prostate_normal .b 1764 to 2152 398 to 9       390/398
(97 %)
0 diff
(100 %id)
TI_159722897   .b 1846 to 2645 867 to 83   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 785/956
(82 %)
39 diff
(96.0 %id)
CB853124 Human Lung Epithelial cells, lung .b 1846 to 2645 803 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 785/795
(98 %)
39 diff
(95.1 %id)
BF679599 Prostate .b 1859 to 2425 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
AA516531 Prostate .b 1869 to 2360 1 to 494       494/496
(99 %)
12 diff
(97.6 %id)
BF856120 prostate_normal .b 1873 to 2245 9 to 382       374/382
(97 %)
3 diff
(99.3 %id)
AW886523 ovary .b 1888 to 2572 1 to 678       678/678
(100 %)
14 diff
(98.0 %id)
CF138789 CNCAP(3)T-225 cell line, Prostate .b 1888 to 2328 8 to 448       441/448
(98 %)
6 diff
(98.7 %id)
TI_154168902   .b 1888 to 2394 80 to 586       507/508
(99 %)
2 diff
(99.7 %id)
AI557413 Prostate .b 1918 to 2453 40 to 578     Submitted on the opposite strand 539/630
(85 %)
24 diff
(96.2 %id)
BU601144 mixed (pool of 40 RNAs) .b 1933 to 2753 1 to 830       830/851
(97 %)
32 diff
(96.3 %id)
BE973555 Prostate .b 1956 to 2608 1 to 644       644/681
(94 %)
16 diff
(97.7 %id)
BU622196 Cell Line, Chondrosarcoma .b 1964 to 2645 700 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 682/682
(100 %)
1 diff
(99.9 %id)
CF145540 CNCAP(3)T-225 cell line, Prostate .b 2002 to 2731 8 to 734       727/734
(99 %)
7 diff
(99.1 %id)
CF146489 CNCAP(3)T-225 cell line, Prostate .b 2002 to 2739 8 to 741       734/741
(99 %)
6 diff
(99.2 %id)
TI_154178947   .b 2006 to 2944 68 to 1003       936/937
(99 %)
43 diff
(95.5 %id)
TI_154177777   .b 2009 to 2907 69 to 955   AAA   887/939
(94 %)
24 diff
(97.5 %id)
W47379 senescent fibroblast .b 2053 to 2419 1 to 370       370/375
(98 %)
5 diff
(98.7 %id)
AI791607   .b 2055 to 2472 1 to 418       418/418
(100 %)
4 diff
(99.1 %id)
BU619261 Cell Line, Chondrosarcoma .b 2056 to 2645 608 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 590/590
(100 %)
0 diff
(100 %id)
AA228940   .b 2057 to 2417 1 to 361       361/361
(100 %)
3 diff
(99.2 %id)
BF858333 prostate_tumor .b 2087 to 2381 1 to 295       295/295
(100 %)
5 diff
(98.4 %id)
BQ230696 leiomyosarcoma, uterus .b 2090 to 2645 617 to 53   AAA Submitted on the opposite strand 565/1418
(39 %)
22 diff
(98.5 %id)
AA528104 normal prostate, Prostate .b 2102 to 2645 543 to 1       543/543
(100 %)
10 diff
(98.2 %id)
AA400417   .b 2110 to 2489 1 to 376       376/376
(100 %)
9 diff
(97.7 %id)
AA531255 normal prostate, Prostate .b 2142 to 2645 503 to 1       503/504
(99 %)
1 diff
(99.9 %id)
BF965018 muscle (skeletal) .b 2158 to 2643 1 to 490       490/987
(49 %)
8 diff
(99.2 %id)
BF084872 prostate_tumor .b 2188 to 2452 267 to 6       262/267
(98 %)
0 diff
(100 %id)
AA573974   .b 2204 to 2562 1 to 359       359/359
(100 %)
0 diff
(100 %id)
BF855203 prostate_normal .b 2206 to 2642 445 to 10     Submitted on the opposite strand 436/445
(97 %)
0 diff
(100 %id)
BF855210 prostate_normal .b 2217 to 2642 431 to 10     Submitted on the opposite strand 422/431
(97 %)
0 diff
(100 %id)
BF855199 prostate_normal .b 2222 to 2630 409 to 2     Submitted on the opposite strand 408/409
(99 %)
0 diff
(100 %id)
AA707108 liver and spleen .b 2227 to 2642 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AI052805 liver and spleen .b 2232 to 2646 415 to 1       415/415
(100 %)
1 diff
(99.8 %id)
AI139031 uterus .b 2232 to 2645 414 to 1       414/414
(100 %)
0 diff
(100 %id)
AA503268 Prostate .b 2234 to 2583 8 to 358       351/378
(92 %)
24 diff
(93.7 %id)
AI571633 adenocarcinoma, Pancreas .b 2237 to 2645 409 to 1       409/409
(100 %)
0 diff
(100 %id)
BE770764 prostate_tumor .b 2248 to 2565 325 to 6       320/332
(96 %)
0 diff
(100 %id)
AA677355 liver and spleen .b 2269 to 2645 376 to 1       376/376
(100 %)
1 diff
(99.8 %id)
TI_149282656   .b 2300 to 3005 778 to 77   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 702/703
(99 %)
6 diff
(99.2 %id)
AA229663   .b 2327 to 2502 1 to 175       175/175
(100 %)
1 diff
(99.5 %id)
AI423843 pooled .b 2327 to 2648 324 to 1       324/324
(100 %)
5 diff
(98.5 %id)
AA917791 pooled .b 2336 to 2675 339 to 1       339/339
(100 %)
1 diff
(99.8 %id)
AA640241   .b 2338 to 2800 9 to 472       464/472
(98 %)
6 diff
(98.8 %id)
BM983868 lung, Primary Lung Epithelial Cells .b 2348 to 3005 674 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 656/656
(100 %)
2 diff
(99.7 %id)
BF856115 prostate_normal .b 2354 to 2646 295 to 4     Submitted on the opposite strand 292/295
(98 %)
0 diff
(100 %id)
AI695410 pooled .b 2356 to 2647 292 to 1       292/292
(100 %)
1 diff
(99.7 %id)
BQ018482 lung, Metastatic Chondrosarcoma .b 2364 to 3014 663 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 645/645
(100 %)
8 diff
(98.8 %id)
BQ020946 lung, Metastatic Chondrosarcoma .b 2368 to 3014 661 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 643/643
(100 %)
2 diff
(99.7 %id)
AI424769 Prostate .b 2369 to 2645 277 to 1       277/277
(100 %)
0 diff
(100 %id)
AA578295 bone marrow, stem cells .b 2385 to 2648 265 to 1       265/268
(98 %)
2 diff
(99.3 %id)
CA430903 cell lines, Chondrosarcoma .b 2395 to 3010 631 to 19   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 613/613
(100 %)
3 diff
(99.6 %id)
AA813266   .b 2414 to 3011 599 to 4       596/599
(99 %)
0 diff
(100 %id)
AA622798   .b 2414 to 2650 1 to 237       237/245
(96 %)
1 diff
(99.6 %id)
CD365288 Alveolar Macrophage, lung .b 2425 to 2660 236 to 1   tiling clone,   236/236
(100 %)
0 diff
(100 %id)
AI201254   .b 2455 to 2645 215 to 25   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 191/191
(100 %)
0 diff
(100 %id)
AA493522 Prostate .b 2465 to 2861 8 to 403       396/403
(98 %)
6 diff
(98.6 %id)
AI620178 Prostate .b 2471 to 3011 538 to 1       538/538
(100 %)
1 diff
(99.9 %id)
AI218326 pooled .b 2492 to 2648 157 to 1       157/157
(100 %)
0 diff
(100 %id)
AA650104   .b 2518 to 2850 10 to 339       330/339
(97 %)
6 diff
(98.3 %id)
AA437224   .b 2522 to 3009 490 to 3       488/490
(99 %)
0 diff
(100 %id)
AA809587 normal prostatic epithelial cells, Prostate .b 2539 to 2976 1 to 435       435/435
(100 %)
4 diff
(99.1 %id)
BI855676 breast, mammary adenocarcinoma, cell line .b 2541 to 3011 467 to 2     Submitted on the opposite strand 466/607
(76 %)
0 diff
(100 %id)
TI_57186315   .b 2541 to 3011 524 to 59     Submitted on the opposite strand 466/820
(56 %)
0 diff
(100 %id)
AA972883 pooled .b 2557 to 3011 455 to 4       452/455
(99 %)
0 diff
(100 %id)
AI989275   .b 2559 to 2657 1 to 99       99/99
(100 %)
0 diff
(100 %id)
AI989281   .b 2559 to 2995 1 to 434       434/434
(100 %)
1 diff
(99.8 %id)
AA533772 normal prostatic epithelial cells, Prostate .b 2577 to 3010 443 to 16   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 428/430
(99 %)
8 diff
(98.2 %id)
AI685682 Prostate .b 2582 to 3006 423 to 2       422/423
(99 %)
0 diff
(100 %id)
AA229495   .b 2599 to 3011 419 to 8       412/419
(98 %)
0 diff
(100 %id)
AA640928   .b 2603 to 3011 1 to 407       407/411
(99 %)
5 diff
(98.8 %id)
AA531606 invasive prostate tumor, Prostate .b 2604 to 3008 421 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 404/406
(99 %)
6 diff
(98.6 %id)
AI672753 thymus, pooled .b 2625 to 3010 383 to 1       383/383
(100 %)
1 diff
(99.8 %id)
BF095382 uterus_tumor .b 2627 to 2941 313 to 3       311/331
(93 %)
0 diff
(100 %id)
AI669511 Prostate .b 2632 to 3008 377 to 3       375/377
(99 %)
0 diff
(100 %id)
AI701376 Prostate .b 2632 to 2889 346 to 85       262/346
(75 %)
0 diff
(100 %id)
W47380 senescent fibroblast .b 2633 to 3008 374 to 1       374/374
(100 %)
1 diff
(99.8 %id)
AI027196   .b 2638 to 3010 386 to 13   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 374/374
(100 %)
1 diff
(99.8 %id)
AA758204   .b 2646 to 3011 371 to 6       366/371
(98 %)
0 diff
(100 %id)
AA507804 Prostate .b 2647 to 3002 1 to 356       356/356
(100 %)
3 diff
(99.2 %id)
AI424280 Prostate .b 2649 to 3009 365 to 5       361/366
(98 %)
0 diff
(100 %id)
AW135064   .b 2651 to 3005 372 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 355/365
(97 %)
0 diff
(100 %id)
BF511129   .b 2651 to 3014 381 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 364/374
(97 %)
0 diff
(100 %id)
AI692186 pooled .b 2652 to 3010 382 to 24   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 359/359
(100 %)
7 diff
(98.1 %id)
AA833543   .b 2654 to 3011 380 to 23       358/380
(94 %)
0 diff
(100 %id)
AA508806 Prostate .b 2661 to 3006 350 to 5       346/353
(98 %)
0 diff
(100 %id)
AA603372   .b 2671 to 3010 354 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 340/340
(100 %)
2 diff
(99.5 %id)
AI748915 aorta .b 2672 to 3008 337 to 1       337/337
(100 %)
3 diff
(99.2 %id)
AW006550 Prostate .b 2673 to 3011 340 to 1       340/340
(100 %)
7 diff
(98.0 %id)
AA400418   .b 2674 to 3010 337 to 1       337/337
(100 %)
2 diff
(99.5 %id)
AA654919   .b 2676 to 2945 9 to 277       269/282
(95 %)
3 diff
(99.0 %id)
BE698848 nervous_normal .b 2681 to 2838 161 to 4       158/161
(98 %)
0 diff
(100 %id)
AA228941   .b 2684 to 3010 342 to 15   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 328/328
(100 %)
7 diff
(97.9 %id)
BF856737 prostate_tumor .b 2685 to 2855 171 to 1     Submitted on the opposite strand 171/184
(92 %)
1 diff
(99.5 %id)
AA650230   .b 2689 to 2949 1 to 261       261/261
(100 %)
8 diff
(97.0 %id)
AA527743 Prostate .b 2724 to 3005 7 to 288   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 282/288
(97 %)
6 diff
(98.0 %id)
AA652376 normal prostate, Prostate .b 2733 to 3011 279 to 1       279/283
(98 %)
7 diff
(97.6 %id)
BF508160   .b 2733 to 3010 296 to 18   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 279/315
(88 %)
6 diff
(98.1 %id)
AA572913 Prostate, prostatic intraepithelial neoplasia - highgrade .b 2768 to 3008 8 to 248   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 241/248
(97 %)
6 diff
(97.6 %id)
BE645962 Prostate .b 2780 to 2865 98 to 13   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 86/86
(100 %)
0 diff
(100 %id)
BF003027 Prostate .b 2791 to 3008 242 to 25   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 218/218
(100 %)
0 diff
(100 %id)
AA579219   .b 2827 to 3010 196 to 13   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 184/184
(100 %)
3 diff
(98.4 %id)
BC111569 PCR rescued clones .c 1 to 740 1 to 736 exact tiling clone,   736/736
(100 %)
5 diff
(99.4 %id)
BC111574 PCR rescued clones .c 1 to 740 1 to 736 exact     736/736
(100 %)
5 diff
(99.4 %id)
AF249669 Prostate Gene NKX3-1, variant not shown         Suspected internal deletion, this clone was ignored    
AF249671 primary prostate tumor xenograft Gene NKX3-1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI