To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene NHLRC2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
259 supporting clones for gene NHLRC2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AI167460 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1 to 305 304 to 1   tiling clone,   304/304
(100 %)
5 diff
(98.4 %id)
DR003391 fetal brain .a 138 to 700 1 to 562       562/562
(100 %)
6 diff
(99.0 %id)
DA821295 pericardium .a 150 to 721 2 to 573   capped   572/573
(99 %)
0 diff
(100 %id)
DA815766   .a 153 to 723 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AK090631   .a 179 to 2728 1 to 2550 exact tiling clone, available from FLJ,   2550/2550
(100 %)
1 diff
(100.0 %id)
AX746547   .a 179 to 2728 1 to 2550 exact     2550/2550
(100 %)
1 diff
(100.0 %id)
DA385370 thalamus .a 179 to 681 2 to 503   capped   502/502
(100 %)
2 diff
(99.7 %id)
NM_198514.2   .a 179 to 2728 1 to 2550 exact RefSeq,   2550/2550
(100 %)
1 diff
(100.0 %id)
DA051253   .a 180 to 747 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA499295 brain .a 180 to 769 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA660099   .a 180 to 743 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA737022   .a 180 to 1052 2 to 874   capped   873/873
(100 %)
11 diff
(98.8 %id)
DB097774 testis .a 180 to 753 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB134210 thymus .a 180 to 723 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB152230 thymus .a 180 to 772 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DB210102 trachea .a 180 to 728 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB216940 trachea .a 180 to 734 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BP425584 small intestine .a 191 to 405 1 to 218     Submitted on the opposite strand 218/219
(99 %)
5 diff
(97.8 %id)
DN997181 breast cancer, Mammary gland (cancer tissue) .a 283 to 857 8 to 582       575/582
(98 %)
6 diff
(99.0 %id)
AW968226   .a 357 to 834 1 to 474       474/474
(100 %)
9 diff
(98.2 %id)
AA017303 eye, retina .a 363 to 861 1 to 495     Submitted on the opposite strand 495/496
(99 %)
13 diff
(97.4 %id)
AI139249 heart .a 363 to 874 1 to 512     Submitted on the opposite strand 512/512
(100 %)
0 diff
(100 %id)
AI701692 pooled .a 363 to 715 1 to 354     Submitted on the opposite strand 354/354
(100 %)
2 diff
(99.5 %id)
DA543267   .a 387 to 928 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA648030   .a 387 to 913 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
CR593205 B cells (Ramos cell line) Cot 25-normalized .a 391 to 2726 1 to 2336 exact     2336/2336
(100 %)
0 diff
(100 %id)
BX363962   .a 391 to 1431 1 to 1040       1040/1040
(100 %)
5 diff
(99.6 %id)
AW469622 pooled .a 399 to 852 1 to 453     Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
AA259148 germinal center B cell .a 427 to 763 1 to 336     Submitted on the opposite strand 336/336
(100 %)
2 diff
(99.5 %id)
AA811690 germinal center B cell .a 429 to 588 1 to 161     Submitted on the opposite strand 161/161
(100 %)
1 diff
(99.4 %id)
AA807996 germinal center B cell .a 435 to 1126 1 to 688     Submitted on the opposite strand 688/708
(97 %)
18 diff
(97.5 %id)
AA744260 germinal center B cell .a 437 to 937 1 to 501     Submitted on the opposite strand 501/501
(100 %)
3 diff
(99.5 %id)
AA824494 germinal center B cell .a 449 to 805 1 to 356       356/356
(100 %)
1 diff
(99.8 %id)
AA731710 germinal center B cell .a 460 to 920 1 to 459     Submitted on the opposite strand 459/459
(100 %)
2 diff
(99.6 %id)
T25332   .a 493 to 740 1 to 249       249/249
(100 %)
3 diff
(98.8 %id)
CN278816 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 690 to 1408 1 to 720       720/720
(100 %)
5 diff
(99.4 %id)
BX647641 human skeletal muscle .a 779 to 6533 1 to 5755   available from DKFZ, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 5755/5755
(100 %)
10 diff
(99.9 %id)
AA258101 germinal center B cell .a 848 to 1178 335 to 5     Submitted on the opposite strand 331/335
(98 %)
0 diff
(100 %id)
BF805888 colon_ins .a 885 to 1172 1 to 289       289/289
(100 %)
10 diff
(96.6 %id)
CV403218 breast .a 886 to 1118 1 to 224       224/224
(100 %)
11 diff
(95.1 %id)
CV403248 breast .a 904 to 1038 1 to 133       133/133
(100 %)
5 diff
(96.3 %id)
CV403211 breast .a 905 to 1118 1 to 214       214/214
(100 %)
6 diff
(97.2 %id)
AA970687 pooled .a 920 to 1094 1 to 175     Submitted on the opposite strand 175/175
(100 %)
0 diff
(100 %id)
AK098487 stomach mucosa .a 1036 to 3480 1 to 2445   available from FLJ,   2445/2445
(100 %)
1 diff
(100.0 %id)
CD689618 normal nasopharynx .a 1104 to 1700 21 to 617       597/617
(96 %)
7 diff
(98.9 %id)
CN278817 embryonic stem cells, cell lines H1, H7, andH9 .a 1175 to 1843 1 to 668       668/668
(100 %)
3 diff
(99.6 %id)
BX328292   .a 1246 to 2094 1 to 847       847/977
(86 %)
14 diff
(98.6 %id)
CB105353 Liver .a 1274 to 1882 1 to 609       609/609
(100 %)
0 diff
(100 %id)
AA992932   .a 1344 to 1832 489 to 1       489/489
(100 %)
3 diff
(99.4 %id)
BC032598 Uterus, leiomyosarcoma .a 1397 to 4167 12 to 2782   available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 2771/2771
(100 %)
0 diff
(100 %id)
BM453028 leiomyosarcoma, uterus .a 1398 to 2313 1 to 924       924/1014
(91 %)
14 diff
(98.7 %id)
AI368834   .a 1404 to 1842 439 to 1       439/439
(100 %)
7 diff
(98.5 %id)
CF552927 Pooled muscle (cardiac and skeletal) .a 1428 to 2304 42 to 920       879/920
(95 %)
9 diff
(99.1 %id)
TI_1948123345   .a 1467 to 2004 131 to 669   fully sequenced,   539/639
(84 %)
9 diff
(98.6 %id)
TI_1948123521   .a 1467 to 1998 121 to 654   fully sequenced,   534/625
(85 %)
0 diff
(100 %id)
CV030820 mixed .a 1468 to 2165 1 to 698       698/698
(100 %)
0 diff
(100 %id)
TI_1948123695   .a 1468 to 1998 134 to 669   fully sequenced,   536/606
(88 %)
9 diff
(98.6 %id)
TI_1948123857   .a 1468 to 2006 133 to 672   fully sequenced,   540/632
(85 %)
1 diff
(99.9 %id)
T25333   .a 1573 to 1839 19 to 279     Submitted on the opposite strand 261/279
(93 %)
7 diff
(97.5 %id)
N25855 melanocyte .a 1628 to 2100 475 to 1     Submitted on the opposite strand 475/478
(99 %)
2 diff
(99.6 %id)
AA017571 eye, retina .a 1761 to 2249 500 to 7     Submitted on the opposite strand 494/518
(95 %)
7 diff
(98.7 %id)
CD644151 Embryonic Stem cells .a 1941 to 2752 12 to 813       802/833
(96 %)
18 diff
(97.9 %id)
TI_1948123522   .a 1968 to 2581 728 to 111   fully sequenced,   618/728
(84 %)
0 diff
(100 %id)
TI_1948123696   .a 1968 to 2570 669 to 63   fully sequenced,   607/669
(90 %)
2 diff
(99.8 %id)
BX352611   .a 1971 to 2726 758 to 1       758/950
(79 %)
29 diff
(97.0 %id)
TI_1948123346   .a 1974 to 2581 723 to 114   fully sequenced,   610/723
(84 %)
0 diff
(100 %id)
TI_1948123858   .a 1976 to 2574 737 to 127   fully sequenced,   611/737
(82 %)
11 diff
(98.6 %id)
TI_149275881   .a 2011 to 2746 822 to 87   AAA   736/1039
(70 %)
1 diff
(100.0 %id)
BU676899 lung, Primary Lung Epithelial Cells .a 2062 to 2746 703 to 19   AAA   685/685
(100 %)
0 diff
(100 %id)
BQ776056 Bone, Human Chondrosarcoma Cell Line .a 2143 to 2732 607 to 19   AAA   589/589
(100 %)
1 diff
(99.9 %id)
AL832090 human heart .a 2179 to 5619 1 to 3441   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 3441/3441
(100 %)
0 diff
(100 %id)
DB369588   .a 2189 to 2732 544 to 1       544/544
(100 %)
0 diff
(100 %id)
AW818565 stomach .a 2254 to 2705 463 to 15       449/472
(95 %)
1 diff
(99.8 %id)
AW818609 stomach .a 2254 to 2705 8 to 457       450/471
(95 %)
7 diff
(98.6 %id)
BE937406 stomach .a 2254 to 2705 471 to 23       449/480
(93 %)
1 diff
(99.8 %id)
BG497790 adenocarcinoma, Prostate .a 2262 to 2908 1 to 647       647/968
(66 %)
12 diff
(98.8 %id)
DB296237   .a 2303 to 2728 426 to 1       426/426
(100 %)
0 diff
(100 %id)
FN075338 breast carcinoma .a 2493 to 2575 83 to 1     Submitted on the opposite strand 83/84
(98 %)
0 diff
(100 %id)
AW105072 pooled .a 2615 to 3058 446 to 1       446/446
(100 %)
2 diff
(99.6 %id)
BE787404 large cell carcinoma, lung .a 2668 to 3391 1 to 716       716/919
(77 %)
50 diff
(94.6 %id)
BX119297 pooled .a 2749 to 3368 1 to 620       620/620
(100 %)
0 diff
(100 %id)
AI678304 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2856 to 3058 223 to 21   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 203/203
(100 %)
1 diff
(99.6 %id)
DA377323 thalamus .a 2921 to 3483 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
AL042780 testis .a 2956 to 3385 1 to 430       430/430
(100 %)
0 diff
(100 %id)
BE720805 head_neck .a 3053 to 3521 493 to 20       474/493
(96 %)
0 diff
(100 %id)
AW978786   .a 3107 to 3705 600 to 1     Submitted on the opposite strand 600/600
(100 %)
17 diff
(97.2 %id)
TI_157600164   .a 3220 to 3706 569 to 86   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 484/812
(59 %)
8 diff
(99.1 %id)
AW297204   .a 3225 to 3706 500 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 483/483
(100 %)
1 diff
(99.8 %id)
AW169943 pooled .a 3257 to 3706 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AA994063 pooled .a 3326 to 3706 382 to 1       382/382
(100 %)
4 diff
(99.0 %id)
AA810251 germinal center B cell .a 3380 to 3705 327 to 1       327/327
(100 %)
2 diff
(99.4 %id)
AI423825 pooled .a 3446 to 3706 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
DA883475   .a 3577 to 4135 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
AV760107 bone marrow .a 3662 to 4330 1 to 657       657/657
(100 %)
11 diff
(98.4 %id)
BE739115 hypernephroma, Kidney .a 4045 to 4472 1 to 440       440/440
(100 %)
17 diff
(96.2 %id)
BF212228 bone marrow, from chronic myelogenous leukemia .a 4283 to 4955 1 to 671       671/728
(92 %)
15 diff
(98.0 %id)
N94050 liver and spleen .a 4419 to 4664 1 to 248       248/248
(100 %)
3 diff
(98.8 %id)
N85919   .a 4467 to 4676 1 to 209       209/210
(99 %)
3 diff
(98.6 %id)
EH338475   .a 4505 to 4587 1 to 83       83/83
(100 %)
2 diff
(97.6 %id)
BE739452 hypernephroma, Kidney .a 4617 to 5163 548 to 2       547/548
(99 %)
0 diff
(100 %id)
BX491696   .a 4618 to 5177 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
BX491744   .a 4618 to 5152 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
CK822180 Pancreas, Purified pancreatic islet .a 4841 to 5428 1 to 589     Submitted on the opposite strand 589/589
(100 %)
2 diff
(99.7 %id)
BQ353645 head_neck .a 4873 to 5174 32 to 326       295/326
(90 %)
6 diff
(98.2 %id)
AK055215   .a 4892 to 7400 1 to 2509   tiling clone, available from FLJ,   2509/2509
(100 %)
1 diff
(100.0 %id)
DA472296   .a 4893 to 5449 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AA332237 Embryo, 8 weeks .a 4903 to 5212 1 to 311       311/316
(98 %)
3 diff
(99.1 %id)
BX471296   .a 4958 to 5443 1 to 486       486/486
(100 %)
3 diff
(99.4 %id)
AA318720 Spleen .a 5074 to 5392 1 to 319       319/319
(100 %)
3 diff
(99.1 %id)
AW961481   .a 5091 to 5627 1 to 538       538/538
(100 %)
17 diff
(96.9 %id)
N69559 liver and spleen .a 5100 to 5510 422 to 4       419/424
(98 %)
0 diff
(100 %id)
CK822181 Pancreas, Purified pancreatic islet .a 5113 to 5690 597 to 19   AAA Submitted on the opposite strand 579/579
(100 %)
1 diff
(99.9 %id)
BX953760   .a 5145 to 5545 1 to 401       401/401
(100 %)
2 diff
(99.6 %id)
BM312431 Pancreas, Purified pancreatic islet .a 5252 to 5691 450 to 9       442/450
(98 %)
0 diff
(100 %id)
BE245693 leukopheresis .a 5306 to 5696 393 to 2       392/393
(99 %)
0 diff
(100 %id)
DA137135 alzheimer cortex .a 5448 to 5968 2 to 525   capped   524/524
(100 %)
4 diff
(99.3 %id)
BX953394   .a 5555 to 6043 1 to 489       489/489
(100 %)
0 diff
(100 %id)
CN415407 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 5620 to 6297 1 to 679       679/679
(100 %)
3 diff
(99.6 %id)
C04046 heart .a 5768 to 6130 1 to 361       361/361
(100 %)
14 diff
(96.2 %id)
AK094313 cerebellum .a 5791 to 7727 1 to 1936   tiling clone, available from FLJ,   1936/1936
(100 %)
4 diff
(99.8 %id)
DA059026 cerebellum .a 5792 to 6351 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
AW402805 lymph .a 5889 to 6393 8 to 512       505/512
(98 %)
6 diff
(98.9 %id)
TI_154139250   .a 5889 to 6550 80 to 741       662/663
(99 %)
4 diff
(99.4 %id)
BG182401   .a 5941 to 6525 50 to 639       590/886
(66 %)
44 diff
(95.1 %id)
CN415408 embryonic stem cells, cell lines H1, H7, andH9 .a 6024 to 6756 1 to 733       733/733
(100 %)
3 diff
(99.6 %id)
AW305365 brain, three pooled meningiomas .a 6083 to 6531 449 to 1       449/449
(100 %)
0 diff
(100 %id)
BG399235 Kidney .a 6123 to 6716 1 to 594       594/594
(100 %)
0 diff
(100 %id)
CB069793 Pancreas, Purified pancreatic islet .a 6312 to 6872 1 to 561       561/561
(100 %)
3 diff
(99.5 %id)
TI_159722114   .a 6517 to 7400 950 to 84   AAA   867/957
(90 %)
21 diff
(97.9 %id)
CA944475 Human Lung Epithelial cells, lung .a 6647 to 7400 767 to 17   AAA   751/751
(100 %)
6 diff
(99.3 %id)
BG183942   .a 6669 to 6994 326 to 1     Submitted on the opposite strand 326/326
(100 %)
3 diff
(99.1 %id)
BX644192   .a 6742 to 7361 1 to 620       620/620
(100 %)
0 diff
(100 %id)
BQ021086 lung, Metastatic Chondrosarcoma .a 6804 to 7400 614 to 17   AAA   598/598
(100 %)
1 diff
(99.9 %id)
DB314782   .a 6868 to 7400 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
CB068517 Pancreas, Purified pancreatic islet .a 6902 to 7399 498 to 1       498/498
(100 %)
0 diff
(100 %id)
DA214356 brain .a 6903 to 7421 2 to 520   capped   519/519
(100 %)
2 diff
(99.7 %id)
BM670596 eye, fetal eyes .a 6936 to 7400 481 to 17   AAA   465/465
(100 %)
0 diff
(100 %id)
AI057072 liver and spleen .a 6952 to 7401 450 to 1       450/450
(100 %)
0 diff
(100 %id)
BU156138 eye, retinoblastoma .a 7003 to 7400 1 to 398   AAA   398/398
(100 %)
0 diff
(100 %id)
AI760198 pooled .a 7013 to 7558 558 to 13   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 546/546
(100 %)
0 diff
(100 %id)
BM987242 mixed .a 7021 to 7400 396 to 17   AAA   380/380
(100 %)
0 diff
(100 %id)
AW439984 2 pooled tumors (clear cell type), Kidney .a 7031 to 7401 374 to 3       372/374
(99 %)
0 diff
(100 %id)
G36661   .a 7070 to 7401 334 to 2     Submitted on the opposite strand 333/334
(99 %)
0 diff
(100 %id)
N63178 multiple sclerosis lesions .a 7070 to 7401 334 to 2       333/334
(99 %)
0 diff
(100 %id)
DA316291 hippocampus .a 7093 to 7626 2 to 535   tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
DB296835 cerebellum .a 7183 to 7727 546 to 1       546/546
(100 %)
2 diff
(99.7 %id)
BE046449 colon, juvenile granulosa tumor .a 7199 to 7720 522 to 1       522/522
(100 %)
0 diff
(100 %id)
TI_157614364   .a 7203 to 7719 606 to 90   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 517/517
(100 %)
2 diff
(99.7 %id)
BX647663 fetal skin .a 7254 to 11225 1 to 3971   tiling clone, available from DKFZ, AAA   3971/3971
(100 %)
8 diff
(99.8 %id)
AL598348   .a 7254 to 7862 1 to 609       609/609
(100 %)
0 diff
(100 %id)
CF528389 placenta .a 7277 to 7719 461 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 443/443
(100 %)
0 diff
(100 %id)
DB161113 thymus .a 7307 to 7889 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BX474771   .a 7420 to 7981 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
DB276384 uterus .a 7580 to 8119 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB146751 thymus .a 7695 to 8223 2 to 528   capped   527/527
(100 %)
5 diff
(99.1 %id)
AK126751 cerebellum .a 7759 to 11225 1 to 3467   tiling clone, available from FLJ,   3467/3467
(100 %)
2 diff
(100.0 %id)
DA120204 cerebellum .a 7760 to 8207 2 to 449   capped   448/448
(100 %)
0 diff
(100 %id)
CN263615 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 7761 to 8356 1 to 596       596/596
(100 %)
2 diff
(99.7 %id)
BX484217   .a 7856 to 8374 34 to 550       517/550
(94 %)
12 diff
(97.9 %id)
CN482162 eye .a 8138 to 8648 1 to 511       511/511
(100 %)
4 diff
(99.3 %id)
BG980666 colon_normal .a 8306 to 8585 281 to 4       278/284
(97 %)
0 diff
(100 %id)
BC013743 Kidney, hypernephroma .a 8342 to 11225 1 to 2884   tiling clone, available from MGC, AAA   2884/2884
(100 %)
1 diff
(100.0 %id)
BG168163 hypernephroma, cell line, Kidney .a 8343 to 9076 1 to 726   available from MGC,   726/763
(95 %)
21 diff
(97.3 %id)
BQ380236 uterus_tumor .a 8433 to 8786 4 to 357       354/357
(99 %)
6 diff
(98.4 %id)
BQ380234 uterus_tumor .a 8446 to 8667 1 to 223       223/223
(100 %)
10 diff
(95.6 %id)
DA495928 brain .a 8518 to 9090 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BF839360 head_neck .a 8540 to 8810 26 to 296       271/310
(87 %)
6 diff
(98.1 %id)
DA510769 brain .a 8570 to 9145 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA146227 amygdala .a 8591 to 9160 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA927281 small intestine .a 8602 to 9186 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
BX477544   .a 8633 to 8983 1 to 351       351/351
(100 %)
2 diff
(99.5 %id)
DA300293 hippocampus .a 8652 to 9224 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AW901804 nervous_normal .a 8703 to 9067 1 to 365       365/365
(100 %)
7 diff
(98.1 %id)
DN994012 brain, whole brain .a 8717 to 9356 2 to 641       640/641
(99 %)
6 diff
(99.1 %id)
DA159866 amygdala .a 8742 to 9234 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
AK000154 colon .a 8806 to 11225 1 to 2420   available from FLJ, AAA   2420/2420
(100 %)
3 diff
(99.9 %id)
BP221235 colon .a 8806 to 9365 1 to 562       562/563
(99 %)
24 diff
(95.8 %id)
DA780077 brain .a 8812 to 9384 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA933030 Spleen .a 8886 to 9448 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA180512 amygdala .a 8925 to 9485 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BF329593 breast_normal .a 8994 to 9322 330 to 3       328/332
(98 %)
0 diff
(100 %id)
BF329589 breast_normal .a 8999 to 9323 326 to 3       324/336
(96 %)
0 diff
(100 %id)
BF329592 breast_normal .a 8999 to 9323 33 to 357       325/364
(89 %)
12 diff
(96.8 %id)
BF370578 prostate_normal .a 9013 to 9168 1 to 153       153/153
(100 %)
4 diff
(97.4 %id)
AA488312   .a 9073 to 9251 33 to 210       178/210
(84 %)
6 diff
(97.2 %id)
BX415935 thymus .a 9094 to 9951 1 to 860       860/860
(100 %)
41 diff
(95.3 %id)
CN427094 embryonic stem cells, DMSO-treated H9 cellline .a 9224 to 9687 1 to 464       464/464
(100 %)
1 diff
(99.8 %id)
DA134385 alzheimer cortex .a 9270 to 9819 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
BU852173 testis .a 9311 to 9959 651 to 1     Submitted on the opposite strand 651/833
(78 %)
7 diff
(99.2 %id)
DB201393 trachea .a 9398 to 9981 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
CB106243 Liver .a 9415 to 9877 1 to 463       463/463
(100 %)
4 diff
(99.2 %id)
CB045450 colon, juvenile granulosa tumor .a 9478 to 9733 12 to 267       256/430
(59 %)
1 diff
(99.8 %id)
BF245596 brain, glioblastoma .a 9543 to 10139 1 to 599       599/890
(67 %)
25 diff
(97.2 %id)
CK430427 eye, lacrimal gland .a 9583 to 10193 1 to 611       611/611
(100 %)
0 diff
(100 %id)
N78059 liver and spleen .a 9694 to 9956 1 to 264       264/264
(100 %)
3 diff
(98.9 %id)
DA567994 whole embryo, mainly head .a 9704 to 10181 2 to 480   capped   479/480
(99 %)
6 diff
(98.8 %id)
BG675218 skin .a 9775 to 10593 1 to 824       824/1012
(81 %)
11 diff
(99.0 %id)
BG616197 embryonal carcinoma, testis .a 9816 to 10560 1 to 758       758/922
(82 %)
22 diff
(97.7 %id)
AI378384 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9858 to 10325 1 to 468     Submitted on the opposite strand 468/468
(100 %)
0 diff
(100 %id)
BG573582 placenta .a 9979 to 10553 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
BG569235 Liver .a 10018 to 10287 1 to 278       278/278
(100 %)
16 diff
(94.3 %id)
AA339138 brain .a 10169 to 10394 1 to 226       226/226
(100 %)
4 diff
(98.3 %id)
CD678757 eye, Trabecular meshwork .a 10230 to 10769 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
CB963973 Blood vessels - aorta, basilar and artery .a 10246 to 10983 1 to 743       743/744
(99 %)
7 diff
(99.1 %id)
CA776549 Pancreas, Purified pancreatic islet .a 10252 to 10776 1 to 525       525/525
(100 %)
3 diff
(99.5 %id)
CB070165 Pancreas, Purified pancreatic islet .a 10255 to 10725 10 to 480       471/480
(98 %)
6 diff
(98.8 %id)
EB388098 eye, optic nerve .a 10269 to 11039 1 to 771       771/771
(100 %)
0 diff
(100 %id)
BG573526 placenta .a 10289 to 10970 1 to 682       682/682
(100 %)
8 diff
(98.9 %id)
BX457471 thymus .a 10314 to 11198 878 to 1       878/895
(98 %)
20 diff
(97.8 %id)
TI_149294788   .a 10343 to 11225 954 to 86   AAA   869/977
(88 %)
14 diff
(98.6 %id)
R25942 placenta .a 10384 to 10681 1 to 301       301/304
(99 %)
9 diff
(97.1 %id)
BM747100 Ascites, stomach .a 10421 to 11054 1 to 630       630/630
(100 %)
3 diff
(99.6 %id)
DR422121 eye, Pterygium .a 10422 to 11198 1 to 777       777/777
(100 %)
2 diff
(99.8 %id)
TI_149295231   .a 10438 to 11225 846 to 65   AAA   782/932
(83 %)
12 diff
(98.8 %id)
R66221 placenta .a 10444 to 10834 1 to 407       407/410
(99 %)
21 diff
(94.9 %id)
R65940 placenta .a 10445 to 10735 1 to 297       297/298
(99 %)
9 diff
(97.0 %id)
R81066 placenta .a 10445 to 10788 1 to 347       347/352
(98 %)
13 diff
(96.4 %id)
BF994043 placenta_normal .a 10483 to 10967 1 to 484       484/485
(99 %)
13 diff
(97.4 %id)
FN101770 breast carcinoma .a 10497 to 10619 123 to 1     Submitted on the opposite strand 123/123
(100 %)
2 diff
(98.4 %id)
BM985340 lung .a 10534 to 11225 710 to 19   AAA   692/692
(100 %)
0 diff
(100 %id)
BU619718 Cell Line, Chondrosarcoma .a 10543 to 11225 701 to 19   AAA   683/683
(100 %)
0 diff
(100 %id)
BG034195 breast, mammary adenocarcinoma, cell line .a 10553 to 11229 1 to 680       680/955
(71 %)
12 diff
(98.8 %id)
CA314224 Human Lung Epithelial cells, lung .a 10563 to 11225 681 to 19   AAA   663/678
(97 %)
3 diff
(99.6 %id)
TI_149306287   .a 10570 to 11225 746 to 93   AAA   654/987
(66 %)
6 diff
(99.4 %id)
BU686341 lung, Primary Lung Epithelial Cells .a 10570 to 11225 672 to 19   AAA   654/686
(95 %)
6 diff
(99.2 %id)
BU683416 lung .a 10584 to 11225 660 to 19   AAA   642/642
(100 %)
0 diff
(100 %id)
BE857566 brain, glioblastoma (pooled) .a 10605 to 11214 610 to 1       610/610
(100 %)
0 diff
(100 %id)
BY798676 eye .a 10658 to 11162 12 to 516       505/516
(97 %)
6 diff
(98.9 %id)
BQ027580 mixed .a 10666 to 11225 578 to 19   AAA   560/560
(100 %)
0 diff
(100 %id)
DB300443 cerebellum .a 10679 to 11225 550 to 1       550/550
(100 %)
3 diff
(99.5 %id)
DB354448 whole embryo, mainly head .a 10681 to 11225 543 to 1       543/547
(99 %)
22 diff
(96.0 %id)
BE219610 carcinoid, lung .a 10686 to 11229 546 to 3       544/546
(99 %)
0 diff
(100 %id)
R78274 placenta .a 10721 to 11199 1 to 483   fully sequenced,   483/483
(100 %)
26 diff
(94.7 %id)
BU754214 placenta .a 10722 to 11223 520 to 19   AAA   502/510
(98 %)
3 diff
(99.5 %id)
BQ025078 placenta .a 10722 to 11225 522 to 19   AAA   504/512
(98 %)
1 diff
(99.9 %id)
AI371686 brain, glioblastoma (pooled) .a 10746 to 11216 471 to 1       471/471
(100 %)
0 diff
(100 %id)
BP398580 pancreatic islet .a 10780 to 11225 1 to 446     Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
BF593046 Kidney .a 10782 to 11225 456 to 13   AAA   444/444
(100 %)
0 diff
(100 %id)
AI051862   .a 10788 to 11225 438 to 1       438/438
(100 %)
0 diff
(100 %id)
CA776239 Pancreas, Purified pancreatic islet .a 10789 to 11224 436 to 1       436/436
(100 %)
0 diff
(100 %id)
AI167515 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 10792 to 11225 434 to 1       434/434
(100 %)
0 diff
(100 %id)
AI499182 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 10812 to 11225 414 to 1       414/414
(100 %)
0 diff
(100 %id)
FN066587 breast carcinoma .a 10813 to 10916 104 to 1     Submitted on the opposite strand 104/104
(100 %)
0 diff
(100 %id)
AI744414 ovary, tumor, 5 pooled (see description) .a 10813 to 11231 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AI566511 adenocarcinoma, Pancreas .a 10813 to 11226 414 to 1       414/414
(100 %)
4 diff
(99.1 %id)
CB069674 Pancreas, Purified pancreatic islet .a 10813 to 11225 413 to 1       413/413
(100 %)
0 diff
(100 %id)
N58469 liver and spleen .a 10815 to 11227 414 to 1       414/414
(100 %)
4 diff
(99.1 %id)
R72974 placenta .a 10817 to 11157 1 to 351       351/357
(98 %)
15 diff
(95.8 %id)
BP395704 pancreatic islet .a 10822 to 11197 1 to 376     Submitted on the opposite strand 376/376
(100 %)
0 diff
(100 %id)
AI167517 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 10826 to 11225 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AI337606 brain, tumor, 5 pooled (see description) .a 10826 to 11229 404 to 1       404/404
(100 %)
1 diff
(99.8 %id)
BQ023284 placenta .a 10834 to 11225 410 to 19   AAA   392/392
(100 %)
1 diff
(99.8 %id)
BQ022443 placenta .a 10839 to 11225 404 to 18   AAA   387/387
(100 %)
4 diff
(99.0 %id)
BQ025711 placenta .a 10859 to 11225 385 to 19   AAA   367/367
(100 %)
4 diff
(99.0 %id)
AI520856 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 10886 to 11232 348 to 2       347/348
(99 %)
0 diff
(100 %id)
BG388957 embryonal carcinoma, cell line, testis .a 10901 to 11225 1 to 321   AAA   321/321
(100 %)
4 diff
(98.8 %id)
R66693.
matches multiple genes
placenta .a 10905 to 11231 328 to 1     also hits gene goyshaw 328/330
(99 %)
3 diff
(99.1 %id)
R67570 placenta .a 10907 to 11219 327 to 12       316/327
(96 %)
0 diff
(100 %id)
R26752 placenta .a 10910 to 11228 324 to 1       324/331
(97 %)
10 diff
(97.0 %id)
R80957 placenta .a 10910 to 11213 309 to 1       309/313
(98 %)
5 diff
(98.5 %id)
EC543483 Prostate .a 10924 to 11031 1 to 107       107/107
(100 %)
1 diff
(99.1 %id)
R65837 placenta .a 10924 to 11219 298 to 1       298/298
(100 %)
2 diff
(99.4 %id)
AI290178 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 10942 to 11225 284 to 1       284/284
(100 %)
0 diff
(100 %id)
R78275 placenta .a 10970 to 11215 247 to 1   fully sequenced,   247/247
(100 %)
0 diff
(100 %id)
AA488287   .a 11008 to 11226 219 to 1       219/219
(100 %)
0 diff
(100 %id)
FN079757 breast carcinoma .a 11097 to 11179 84 to 5     Submitted on the opposite strand 80/85
(94 %)
0 diff
(100 %id)
AI910619 ovary, tumor, 5 pooled (see description) .a 11198 to 11548 351 to 1   tiling clone,   351/351
(100 %)
0 diff
(100 %id)
BX538287 Liver .b 1 to 5185 1 to 5185 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 5185/5185
(100 %)
2 diff
(100.0 %id)
TI_154052707   .c-u 1 to 946 1035 to 91 exact tiling clone, AAA   945/1002
(94 %)
24 diff
(97.7 %id)
CA415420 Chondrosarcoma Grade II, Left Pelvis .c-u 262 to 946 704 to 19 exact AAA   686/686
(100 %)
1 diff
(99.9 %id)
BU958726 mixed (pool of 40 RNAs) .c-u 510 to 948 1 to 439   tiling clone,   439/866
(50 %)
2 diff
(99.8 %id)
DR000552 fetal brain .d 1 to 657 1 to 657 exact tiling clone,   657/657
(100 %)
6 diff
(99.1 %id)
BF111904 pooled .d 174 to 699 1 to 526 exact   Submitted on the opposite strand 526/526
(100 %)
0 diff
(100 %id)
AI219810 pooled .d 230 to 704 1 to 475   tiling clone, Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
DB064622 testis .e-u 1 to 524 2 to 525 exact tiling clone, capped   524/524
(100 %)
0 diff
(100 %id)
AW089734 ovary, tumor, 5 pooled (see description) .f-u 1 to 409 409 to 1 exact tiling clone,   409/409
(100 %)
6 diff
(98.6 %id)
BF916844 uterus_tumor Gene NHLRC2, variant not shown         Suspected internal deletion, this clone was ignored    
W78923 liver and spleen Gene NHLRC2, variant not shown              
W85908 liver and spleen Gene NHLRC2, variant not shown              
AA705400 liver and spleen Gene NHLRC2, variant not shown              
AW662726 colon, moderately-differentiated adenocarcinoma Gene NHLRC2, variant not shown       AAA This clone was ignored    
BQ448326 Knee, Osteoarthritic Cartilage Gene NHLRC2, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e-u, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C