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Gene NEDD9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
460 supporting clones for gene NEDD9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA157721 colon, tumor .a -8 to 401 1 to 409       409/409
(100 %)
5 diff
(98.8 %id)
BG475441 melanotic melanoma, skin .a 1 to 685 8 to 699       699/734
(95 %)
21 diff
(97.2 %id)
DB071942 testis .a 1 to 543 9 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
CB266522 adipose .a 1 to 676 6 to 679       679/679
(100 %)
12 diff
(98.3 %id)
DA210280 brain .a 1 to 548 5 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA476874   .a 1 to 551 4 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA386792 thalamus .a 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
DR422170 eye, Pterygium .a 10 to 735 1 to 726       726/726
(100 %)
4 diff
(99.5 %id)
CN370966 embryonic stem cells, DMSO-treated H9 cellline .a 14 to 764 1 to 751       751/751
(100 %)
1 diff
(99.9 %id)
CN370967 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 14 to 704 1 to 691       691/691
(100 %)
3 diff
(99.6 %id)
DA459729 tongue, tumor tissue .a 26 to 586 2 to 564   capped   563/564
(99 %)
4 diff
(99.3 %id)
DA858484 placenta .a 26 to 593 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA335178 hippocampus .a 31 to 616 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA852388 placenta .a 32 to 576 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA791837 brain .a 36 to 539 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
CN370968 embryonic stem cells, DMSO-treated H9 cellline .a 40 to 512 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
DA483028 brain .a 42 to 805 2 to 764   capped   763/763
(100 %)
2 diff
(99.8 %id)
Z43516 brain, total brain .a 65 to 436 1 to 371       371/371
(100 %)
1 diff
(99.8 %id)
T32960 brain .a 65 to 467 1 to 405       405/405
(100 %)
7 diff
(98.3 %id)
R17863 whole brain .a 66 to 435 1 to 376       376/376
(100 %)
9 diff
(97.7 %id)
DB275483 uterus .a 75 to 645 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA020653   .a 136 to 535 166 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
BC040207 Brain, hippocampus .a 136 to 4489 166 to 4517 exact tiling clone, available from MGC, AAA   4517/4517
(100 %)
5 diff
(99.9 %id)
DA144892 amygdala .a 136 to 559 165 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
DA216894 brain .a 136 to 516 169 to 549   capped   548/548
(100 %)
4 diff
(99.3 %id)
DA291501 hippocampus .a 136 to 552 166 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA320461 hippocampus .a 136 to 467 166 to 498   capped   497/497
(100 %)
2 diff
(99.6 %id)
DA333200 hippocampus .a 136 to 542 166 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA378928 thalamus .a 136 to 527 166 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CD622602   .a 136 to 296 153 to 315       315/317
(99 %)
12 diff
(96.3 %id)
CD622603   .a 136 to 296 163 to 2       313/315
(99 %)
0 diff
(100 %id)
CN370969 embryonic stem cells, cell lines H1, H7, andH9 .a 136 to 170 154 to 188       188/188
(100 %)
1 diff
(99.5 %id)
BP218227 caudate nucleus .a 136 to 553 166 to 583       583/583
(100 %)
0 diff
(100 %id)
DA426445 colon .a 136 to 544 167 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA429490 colon .a 136 to 547 167 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
AL546509 placenta, Placenta Cot 25-normalized .a 136 to 1101 155 to 1112       1112/1115
(99 %)
20 diff
(98.3 %id)
AL554406 placenta, Placenta Cot 25-normalized .a 136 to 1108 160 to 1122       1115/1146
(97 %)
31 diff
(97.3 %id)
DA453627 tongue, tumor tissue .a 136 to 556 175 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DA475014   .a 136 to 526 166 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
AL705300 human skeletal muscle .a 136 to 576 164 to 604       604/604
(100 %)
2 diff
(99.7 %id)
BP230762 brain .a 136 to 554 166 to 584       584/584
(100 %)
3 diff
(99.5 %id)
DA498168 brain .a 136 to 326 178 to 369   capped   368/368
(100 %)
1 diff
(99.8 %id)
DA535305 heart .a 136 to 546 167 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA538896 Kidney .a 136 to 549 175 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
BP233026 muscle .a 136 to 554 164 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DB443483.
matches multiple genes
testis .a 136 to 361 167 to 391     also hits gene meejar 391/391
(100 %)
5 diff
(98.8 %id)
DB468955.
matches multiple genes
hippocampus .a 136 to 395 165 to 424     also hits gene meejar 424/424
(100 %)
9 diff
(97.9 %id)
DB479635.
matches multiple genes
hippocampus .a 136 to 462 166 to 492     also hits gene meejar 492/492
(100 %)
3 diff
(99.4 %id)
BP233751 coronary artery .a 136 to 553 166 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP234656 coronary artery .a 136 to 552 166 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA561101 heart .a 136 to 470 165 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DA581394 lung .a 136 to 454 167 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DA581524 lung .a 136 to 535 168 to 567   capped   566/566
(100 %)
4 diff
(99.3 %id)
DA588741 lung .a 136 to 525 166 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA589273 lung .a 136 to 554 166 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BG704686 brain, hippocampus .a 136 to 665 171 to 702       702/702
(100 %)
9 diff
(98.8 %id)
BG704804 brain, hippocampus .a 136 to 586 171 to 619       619/621
(99 %)
11 diff
(98.3 %id)
BM906446 ovary (pool of 3) .a 136 to 510 176 to 557       544/1087
(50 %)
19 diff
(98.3 %id)
CB996327 placenta, pre-eclamptic placenta .a 136 to 788 193 to 856       829/858
(96 %)
18 diff
(98.0 %id)
CD109669 Human Placenta, placenta .a 136 to 685 185 to 741       721/815
(88 %)
18 diff
(97.8 %id)
CB998131 placenta, pre-eclamptic placenta .a 136 to 651 193 to 716       687/800
(85 %)
26 diff
(96.8 %id)
CF994124 Human Placenta, placenta .a 136 to 591 193 to 653       626/872
(71 %)
21 diff
(97.6 %id)
CF593276 Human Placenta, placenta .a 136 to 727 186 to 778       758/779
(97 %)
9 diff
(98.9 %id)
BP270971 small intestine .a 136 to 552 166 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA623217 Kidney .a 136 to 508 170 to 542   capped   541/541
(100 %)
5 diff
(99.1 %id)
L43821   .a 136 to 3766 176 to 3805 exact tiling clone,   3795/3817
(99 %)
50 diff
(98.7 %id)
DA649251   .a 136 to 508 167 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA649320   .a 136 to 511 171 to 546   capped   545/545
(100 %)
6 diff
(98.9 %id)
DA651656   .a 136 to 284 166 to 314   capped   313/551
(56 %)
1 diff
(99.9 %id)
DA660812   .a 136 to 532 181 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
NM_006403.3   .a 136 to 4491 180 to 4535 exact RefSeq, AAA   4535/4535
(100 %)
0 diff
(100 %id)
DA709614   .a 136 to 502 179 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA710326   .a 136 to 520 167 to 551   capped   550/550
(100 %)
4 diff
(99.3 %id)
AU132178   .a 136 to 699 175 to 737   capped   736/740
(99 %)
4 diff
(99.5 %id)
DA754149   .a 136 to 467 168 to 499   capped   498/498
(100 %)
2 diff
(99.6 %id)
DA771179 brain .a 136 to 536 164 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA772617 brain .a 136 to 555 167 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA774972 brain .a 136 to 542 166 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA775033 brain .a 136 to 530 166 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA775560 brain .a 136 to 546 165 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA776249 brain .a 136 to 546 168 to 578   capped   577/578
(99 %)
1 diff
(99.9 %id)
DA776400 brain .a 136 to 553 166 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA778416 brain .a 136 to 527 180 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA778775 brain .a 136 to 421 166 to 451   capped   450/450
(100 %)
1 diff
(99.8 %id)
DA778882 brain .a 136 to 491 166 to 521   capped   520/522
(99 %)
1 diff
(99.9 %id)
DA787398 brain .a 136 to 543 180 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA788411 brain .a 136 to 553 167 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DA802877 brain .a 136 to 515 166 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA804367 brain .a 136 to 517 165 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA804745 brain .a 136 to 537 166 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA809653 brain .a 136 to 512 169 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA811696 brain .a 136 to 537 166 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA823685 pericardium .a 136 to 521 166 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
AU140787 placenta .a 136 to 685 167 to 720   capped   719/725
(99 %)
11 diff
(98.5 %id)
DA852992 placenta .a 136 to 542 166 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA854223 placenta .a 136 to 563 169 to 596   capped   595/595
(100 %)
3 diff
(99.5 %id)
DA854749 placenta .a 136 to 550 166 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA855885 placenta .a 136 to 519 181 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA855908 placenta .a 136 to 523 179 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA863162 placenta .a 136 to 618 166 to 648   capped   647/647
(100 %)
0 diff
(100 %id)
DA880965   .a 136 to 525 166 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA883884   .a 136 to 530 166 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA885113   .a 136 to 540 164 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA886189   .a 136 to 532 166 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA886496   .a 136 to 540 166 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA896215 skeletal muscle .a 136 to 519 166 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DA922548 small intestine .a 136 to 538 166 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DN999987   .a 136 to 700 153 to 717       717/717
(100 %)
6 diff
(99.2 %id)
DR000077 fetal brain .a 136 to 578 158 to 600       600/600
(100 %)
5 diff
(99.2 %id)
DB018157 esophageal, tumor tissue .a 136 to 535 167 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB043464 testis .a 136 to 540 166 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB075523 testis .a 136 to 537 166 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB084238 testis .a 136 to 532 168 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DB094944 testis .a 136 to 548 180 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DB147353 thymus .a 136 to 544 163 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB151892 thymus .a 136 to 569 162 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DB158331 thymus .a 136 to 567 166 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DB163291 thymus .a 136 to 554 166 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB165187 thymus .a 136 to 504 166 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB194564 trachea .a 136 to 526 176 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DB202349 trachea .a 136 to 542 166 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB207029 trachea .a 136 to 454 163 to 481   capped   480/480
(100 %)
1 diff
(99.8 %id)
DB208337 trachea .a 136 to 454 166 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DB215394 trachea .a 136 to 519 166 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB223215 trachea .a 136 to 522 167 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DB232974 trachea .a 136 to 572 165 to 601   capped   600/600
(100 %)
2 diff
(99.7 %id)
DB234916 trachea .a 136 to 547 166 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB237392 trachea .a 136 to 512 166 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB238422 trachea .a 136 to 572 163 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
U64317   .a 136 to 2748 151 to 2763 exact     2763/2765
(99 %)
6 diff
(99.8 %id)
BP372357 umbilical cord .a 136 to 551 167 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DB279178 uterus .a 136 to 512 166 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB282378 uterus .a 136 to 519 166 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DB282875 uterus .a 136 to 525 166 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB283603 uterus .a 136 to 506 181 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB286445 uterus .a 136 to 521 166 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AL577113 placenta, Placenta Cot 25-normalized .a 1770 to 2959 1177 to 1       1177/1187
(99 %)
43 diff
(96.4 %id)
AL571834 placenta, Placenta Cot 25-normalized .a 1816 to 2922 1113 to 21   tiling clone,   1093/1128
(96 %)
17 diff
(98.5 %id)
AU153762   .a 2116 to 2629 515 to 1       515/559
(92 %)
8 diff
(98.6 %id)
AU158680 placenta .a 4089 to 4491 419 to 17   AAA   403/410
(98 %)
4 diff
(99.1 %id)
AK292682 thymus .b 1 to 3210 2 to 3211 Q139R tiling clone,   3211/3211
(100 %)
4 diff
(99.9 %id)
NM_001142393.1   .b 1 to 4729 2 to 4730 exact RefSeq, AAA   4730/4730
(100 %)
0 diff
(100 %id)
DA676780   .b 1 to 566 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB146341 thymus .b 1 to 573 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB135164 thymus .b 20 to 538 2 to 520   capped   519/519
(100 %)
1 diff
(99.9 %id)
AA360891   .b 23 to 167 1 to 145       145/145
(100 %)
0 diff
(100 %id)
CF138047 lymph .b 32 to 383 7 to 358       352/358
(98 %)
6 diff
(98.4 %id)
TI_154167796   .b 32 to 543 79 to 590       512/512
(100 %)
9 diff
(98.3 %id)
DA678079   .b 36 to 575 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA671844   .b 39 to 637 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
DA676874   .b 43 to 633 2 to 592   capped   591/591
(100 %)
4 diff
(99.4 %id)
DA674944   .b 46 to 623 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA935470 Spleen .b 46 to 643 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
DA643594   .b 49 to 584 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
BX342878   .b 54 to 1024 1 to 970       970/1035
(93 %)
6 diff
(99.5 %id)
AW500430 lymph .b 65 to 509 1 to 445       445/445
(100 %)
5 diff
(98.9 %id)
DB136483 thymus .b 70 to 480 2 to 413   capped   412/412
(100 %)
1 diff
(99.8 %id)
TI_154154689   .b 72 to 568 81 to 577       497/497
(100 %)
1 diff
(99.8 %id)
BQ061981 lymph, lymphoma, cell line .b 338 to 1278 1 to 946       946/962
(98 %)
21 diff
(97.9 %id)
BQ883207 lymph, lymphoma, cell line .b 338 to 1180 1 to 845       845/846
(99 %)
9 diff
(99.0 %id)
CF137937 lymph .b 373 to 729 17 to 374       358/374
(95 %)
6 diff
(98.4 %id)
BQ061286 lymph, lymphoma, cell line .b 373 to 1225 37 to 904       868/1057
(82 %)
26 diff
(97.6 %id)
BQ641910 lymph, lymphoma, cell line .b 373 to 1139 56 to 831       776/866
(89 %)
21 diff
(97.6 %id)
CN370965 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 392 to 748 1 to 357       357/357
(100 %)
2 diff
(99.5 %id)
BQ306752 breast .b 449 to 824 1 to 377       377/420
(89 %)
7 diff
(98.4 %id)
BQ304866 breast .b 450 to 1027 1 to 573       573/586
(97 %)
14 diff
(97.7 %id)
CO249330 Chondrosarcoma Lung Metastasis cell lines, lung .b 452 to 1151 34 to 727       694/824
(84 %)
15 diff
(98.2 %id)
AW630081 2 pooled high-grade transitional celltumors, genitourinary tract .b 465 to 824 1 to 360       360/368
(97 %)
6 diff
(98.4 %id)
DA755882   .b 560 to 1131 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ648652 hepatocellular carcinoma, cell line, Liver .b 562 to 1549 13 to 1000       988/1002
(98 %)
15 diff
(98.6 %id)
BQ643743 hepatocellular carcinoma, cell line, Liver .b 563 to 1429 1 to 869       869/874
(99 %)
7 diff
(99.2 %id)
BQ647728 hepatocellular carcinoma, cell line, Liver .b 563 to 1484 1 to 923       923/926
(99 %)
8 diff
(99.2 %id)
BU155983 melanotic melanoma, skin .b 631 to 1473 1 to 850       850/856
(99 %)
12 diff
(98.6 %id)
CF125783 Chondrosarcoma Lung Metastasis cell lines, lung .b 655 to 1317 1 to 662       662/662
(100 %)
4 diff
(99.4 %id)
TI_154186917   .b 655 to 1547 45 to 921       877/1004
(87 %)
36 diff
(96.5 %id)
AA311484   .b 704 to 1094 1 to 391       391/391
(100 %)
1 diff
(99.8 %id)
DA756372   .b 713 to 1258 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
TI_57189320   .b 749 to 1564 90 to 903       814/814
(100 %)
8 diff
(99.1 %id)
BI861396 breast, mammary adenocarcinoma, cell line .b 750 to 1564 1 to 813       813/813
(100 %)
8 diff
(99.1 %id)
BQ898084 dorsal root ganglia .b 753 to 1655 45 to 951   tiling clone,   907/951
(95 %)
23 diff
(97.6 %id)
CO248366 Chondrosarcoma Lung Metastasis cell lines, lung .b 784 to 1518 1 to 727       727/834
(87 %)
22 diff
(97.4 %id)
BQ305221 breast .b 824 to 1269 9 to 453       443/453
(97 %)
9 diff
(98.1 %id)
CN370970 embryonic stem cells, cell lines H1, H7, andH9 .b 849 to 1536 1 to 687       687/687
(100 %)
4 diff
(99.5 %id)
BF038453 adenocarcinoma, ovary .b 903 to 1599 1 to 689       689/700
(98 %)
23 diff
(96.8 %id)
CF136562 lymph .b 1030 to 1488 1 to 459       459/459
(100 %)
5 diff
(99.0 %id)
TI_154165714   .b 1037 to 1507 80 to 550       471/472
(99 %)
1 diff
(99.8 %id)
DB288202 uterus .b 1142 to 1679 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
AA371958 pituitary gland .b 1190 to 1646 1 to 457       457/457
(100 %)
5 diff
(99.0 %id)
AW500483 lymph .b 1197 to 1658 8 to 469       462/469
(98 %)
6 diff
(98.8 %id)
TI_154154673   .b 1197 to 1692 81 to 576       496/497
(99 %)
1 diff
(99.8 %id)
DB218305 trachea .b 1203 to 1750 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
BF846351 lung_normal .b 1560 to 1955 19 to 414       396/414
(95 %)
6 diff
(98.6 %id)
BI858331 breast, mammary adenocarcinoma, cell line .b 1564 to 1888 1 to 326       326/619
(52 %)
6 diff
(99.1 %id)
BF801665 colon_ins .b 1579 to 1972 414 to 21   tiling clone, Submitted on the opposite strand 394/414
(95 %)
0 diff
(100 %id)
BQ016162 lung, Metastatic Chondrosarcoma .b 1628 to 2316 695 to 9   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 687/695
(98 %)
3 diff
(99.6 %id)
AW843732 colon_normal .b 1643 to 1959 317 to 1       317/317
(100 %)
16 diff
(95.0 %id)
AW843734 colon_normal .b 1643 to 1959 320 to 1       320/320
(100 %)
14 diff
(95.7 %id)
BU429974 lymph .b 1659 to 2094 8 to 443       436/443
(98 %)
6 diff
(98.7 %id)
TI_154151145   .b 1659 to 2275 80 to 696       617/660
(93 %)
28 diff
(95.8 %id)
AU309510 neuroblastoma .b 1680 to 2224 1 to 542       542/544
(99 %)
7 diff
(98.8 %id)
AL600202   .b 1761 to 2227 1 to 467       467/467
(100 %)
3 diff
(99.4 %id)
AA633455 breast .b 1787 to 2305 516 to 1       516/516
(100 %)
17 diff
(96.8 %id)
AW367753 head_neck .b 1965 to 2481 520 to 6       515/520
(99 %)
1 diff
(99.9 %id)
BQ304745 breast .b 1998 to 2236 269 to 22       248/269
(92 %)
0 diff
(100 %id)
BF106378 lung .b 2117 to 2751 1 to 634       634/646
(98 %)
16 diff
(97.6 %id)
BE891710 melanotic melanoma, skin .b 2120 to 2645 1 to 529       529/692
(76 %)
8 diff
(98.9 %id)
BQ646725 hepatocellular carcinoma, cell line, Liver .b 2161 to 2922 1 to 766       766/918
(83 %)
12 diff
(98.7 %id)
BQ651531 hepatocellular carcinoma, cell line, Liver .b 2161 to 2556 1 to 399       399/952
(41 %)
4 diff
(99.6 %id)
BQ650762 hepatocellular carcinoma, cell line, Liver .b 2161 to 2886 1 to 738       738/990
(74 %)
32 diff
(96.8 %id)
BQ652817 hepatocellular carcinoma, cell line, Liver .b 2161 to 3055 1 to 906       906/932
(97 %)
36 diff
(96.2 %id)
CR981310 T-Lymphocytes .b 2195 to 2993 1 to 795       795/796
(99 %)
11 diff
(98.7 %id)
AI888130 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 2263 to 2870 609 to 1       609/723
(84 %)
11 diff
(98.5 %id)
AA322558 brain, cerebellum .b 2283 to 2464 1 to 182       182/182
(100 %)
0 diff
(100 %id)
TI_154135201   .b 2287 to 3201 984 to 77   AAA   908/978
(92 %)
19 diff
(98.1 %id)
BP259500 heart .b 2304 to 2884 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA039243 bladder .b 2312 to 2875 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
AA486343 lung .b 2323 to 2796 1 to 472       472/472
(100 %)
2 diff
(99.6 %id)
BE301275 Kidney, renal cell adenocarcinoma .b 2325 to 2870 574 to 32   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 543/547
(99 %)
13 diff
(97.7 %id)
AI925674 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 2354 to 2870 517 to 1       517/523
(98 %)
1 diff
(99.9 %id)
BF034327 adenocarcinoma, ovary .b 2358 to 3001 1 to 648       648/857
(75 %)
15 diff
(98.3 %id)
CD521164 pooled .b 2399 to 3056 1 to 659       659/789
(83 %)
6 diff
(99.3 %id)
AI084816 liver and spleen .b 2406 to 2867 460 to 1       460/461
(99 %)
4 diff
(99.2 %id)
AI859264 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2427 to 3201 775 to 1       775/775
(100 %)
13 diff
(98.4 %id)
AA614658 breast .b 2438 to 2988 551 to 2       550/554
(99 %)
0 diff
(100 %id)
R86115 breast .b 2474 to 2829 1 to 362       362/413
(87 %)
8 diff
(98.1 %id)
AU138571 placenta .b 2491 to 3030 2 to 542   capped   541/541
(100 %)
7 diff
(98.8 %id)
AJ420493   .b 2499 to 4724 4 to 2231   tiling clone, AAA   2228/2231
(99 %)
6 diff
(99.8 %id)
BM991128 lung, Lung Focal Fibrosis .b 2510 to 3194 703 to 19   AAA   685/685
(100 %)
4 diff
(99.5 %id)
BU624428 cell lines, Enchondroma .b 2536 to 3205 685 to 19   AAA   667/667
(100 %)
7 diff
(99.0 %id)
BM998549 lung, Metastatic Chondrosarcoma .b 2550 to 3210 676 to 19   AAA   658/658
(100 %)
7 diff
(99.0 %id)
BE220087 carcinoid, lung .b 2557 to 3215 665 to 5       661/665
(99 %)
0 diff
(100 %id)
AI834268 head_neck .b 2560 to 2777 8 to 223       216/223
(96 %)
6 diff
(97.4 %id)
BE677205 dorsal root ganglia .b 2572 to 3211 636 to 1       636/636
(100 %)
18 diff
(97.2 %id)
N27798 melanocyte .b 2582 to 2844 1 to 265   fully sequenced,   265/265
(100 %)
2 diff
(99.3 %id)
AW007104 colon .b 2585 to 3194 611 to 1   tiling clone,   611/611
(100 %)
1 diff
(99.9 %id)
CA435017 lung, Metastatic Chondrosarcoma .b 2590 to 3201 630 to 19   AAA   612/612
(100 %)
4 diff
(99.4 %id)
BQ003155 Chondrosarcoma, Left Pelvis .b 2591 to 3201 628 to 19   AAA   610/610
(100 %)
2 diff
(99.7 %id)
AA578880   .b 2621 to 2881 9 to 268       260/277
(93 %)
5 diff
(98.2 %id)
AI686498 Prostate .b 2624 to 3213 592 to 1       592/592
(100 %)
3 diff
(99.5 %id)
AI566735 Kidney .b 2627 to 3211 588 to 3       586/588
(99 %)
0 diff
(100 %id)
DA425028 colon .b 2644 to 3191 2 to 550   capped   549/549
(100 %)
4 diff
(99.3 %id)
BM083497 pooled germ cell tumors .b 2672 to 3198 531 to 4       528/531
(99 %)
0 diff
(100 %id)
T39285 lung .b 2706 to 2905 1 to 199       199/199
(100 %)
2 diff
(99.0 %id)
T39304 lung .b 2706 to 2964 1 to 258       258/258
(100 %)
10 diff
(96.2 %id)
T39300 lung .b 2706 to 2942 1 to 236       236/236
(100 %)
7 diff
(97.1 %id)
T39336 lung .b 2706 to 2986 1 to 280       280/280
(100 %)
2 diff
(99.3 %id)
BF512923   .b 2721 to 3201 498 to 18   AAA   481/481
(100 %)
3 diff
(99.4 %id)
AW613847 2 pooled high-grade transitional celltumors, genitourinary tract .b 2740 to 3205 466 to 1       466/468
(99 %)
4 diff
(99.2 %id)
AI968682 pooled germ cell tumors .b 2742 to 3201 460 to 1       460/460
(100 %)
1 diff
(99.8 %id)
AW089138 brain, tumor, 5 pooled (see description) .b 2743 to 2861 119 to 1       119/124
(95 %)
6 diff
(95.2 %id)
BP291633 lung .b 2743 to 3311 1 to 570       570/570
(100 %)
6 diff
(99.0 %id)
AA493210 colon .b 2777 to 3201 426 to 1       426/426
(100 %)
10 diff
(97.7 %id)
BG620747 placenta .b 2782 to 3196 1 to 416       416/867
(47 %)
9 diff
(99.0 %id)
N88590   .b 2786 to 2953 1 to 165       165/168
(98 %)
8 diff
(95.3 %id)
DA830059 placenta .b 2798 to 3524 2 to 736   capped   735/858
(85 %)
16 diff
(98.2 %id)
N20931 melanocyte .b 2814 to 3211 402 to 1   fully sequenced,   402/402
(100 %)
5 diff
(98.8 %id)
BP340191 Spleen .b 2846 to 3423 1 to 580       580/580
(100 %)
17 diff
(97.1 %id)
AI753359 bone marrow stroma .b 2873 to 3210 356 to 19   AAA   338/338
(100 %)
1 diff
(99.8 %id)
Z42849 brain, total brain .b 2884 to 3112 1 to 229       229/229
(100 %)
0 diff
(100 %id)
R61431 whole brain .b 2885 to 3448 1 to 561       561/563
(99 %)
12 diff
(97.9 %id)
N71155 lung .b 2916 to 3210 297 to 1       297/308
(96 %)
2 diff
(99.4 %id)
BM053026 Islets of Langerhans, Pancreas .b 2943 to 3201 1 to 260   AAA   260/260
(100 %)
3 diff
(98.9 %id)
BM053054 Islets of Langerhans, Pancreas .b 2943 to 3201 1 to 260   AAA   260/260
(100 %)
3 diff
(98.9 %id)
BM053106 Islets of Langerhans, Pancreas .b 2945 to 3201 1 to 258   AAA   258/258
(100 %)
3 diff
(98.9 %id)
CB215014 normal endometrium, late proliferativephase, cycle day 13, uterus .b 2952 to 3569 1 to 618   tiling clone,   618/618
(100 %)
0 diff
(100 %id)
BU753694 placenta .b 2955 to 3210 272 to 18   AAA   255/255
(100 %)
4 diff
(98.5 %id)
BG025573 lymph, lymphoma, cell line .b 2962 to 3757 1 to 796       796/843
(94 %)
37 diff
(95.7 %id)
AW516368 lymph node, lymphoma, follicular mixed small and largecell .b 2971 to 3194 234 to 11   AAA   224/224
(100 %)
1 diff
(99.6 %id)
T40508 lung .b 3028 to 3178 151 to 1       151/151
(100 %)
1 diff
(99.4 %id)
AA380175 skin .b 3041 to 3306 1 to 267       267/267
(100 %)
2 diff
(99.3 %id)
AW963532   .b 3052 to 3704 1 to 664       664/665
(99 %)
21 diff
(96.9 %id)
AA064805   .b 3053 to 3203 152 to 2       151/185
(81 %)
0 diff
(100 %id)
Z44251 brain, total brain .b 3092 to 3279 1 to 188       188/189
(99 %)
3 diff
(98.5 %id)
AA488061 lung .b 3108 to 3203 102 to 7       96/102
(94 %)
0 diff
(100 %id)
AU120850 whole embryo, mainly body .b 3109 to 3970 2 to 860   capped   859/861
(99 %)
7 diff
(99.2 %id)
BF037777 adenocarcinoma, ovary .b 3129 to 3827 1 to 687       687/936
(73 %)
24 diff
(97.5 %id)
CN391134 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3134 to 3753 7 to 626       620/626
(99 %)
6 diff
(99.1 %id)
BP339531 Spleen .b 3134 to 3710 1 to 581       581/581
(100 %)
8 diff
(98.7 %id)
BG259949 bladder, transitional cell papilloma, cell line .b 3151 to 3887 15 to 738       724/930
(77 %)
23 diff
(97.6 %id)
DA682523 ovary .b 3153 to 3719 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
BM750675 Ascites, stomach .b 3154 to 3703 1 to 550       550/550
(100 %)
2 diff
(99.7 %id)
BP371528 testis .b 3159 to 3741 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BX281499 breast, mammary adenocarcinoma, cell line .b 3203 to 3694 1 to 493       493/493
(100 %)
5 diff
(99.0 %id)
TI_57187591   .b 3204 to 3973 54 to 841       788/838
(94 %)
20 diff
(97.7 %id)
TI_57187598   .b 3204 to 4077 51 to 926       876/880
(99 %)
13 diff
(98.6 %id)
BI857289 breast, mammary adenocarcinoma, cell line .b 3205 to 3973 1 to 786       786/836
(94 %)
19 diff
(97.8 %id)
BI857294 breast, mammary adenocarcinoma, cell line .b 3205 to 4077 1 to 875       875/879
(99 %)
13 diff
(98.6 %id)
BP288922 lung .b 3221 to 3800 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BF767970 colon_normal .b 3237 to 3480 1 to 244       244/244
(100 %)
4 diff
(98.4 %id)
CD710686 normal nasopharynx .b 3245 to 3686 45 to 486       442/486
(90 %)
8 diff
(98.4 %id)
H09381 whole brain .b 3250 to 3756 1 to 514       514/514
(100 %)
14 diff
(97.3 %id)
AA279249 germinal center B cell .b 3273 to 3589 1 to 315       315/315
(100 %)
6 diff
(98.1 %id)
AU146801 whole embryo, mainly body .b 4177 to 4722 548 to 1       548/553
(99 %)
12 diff
(97.9 %id)
AU309511 neuroblastoma .b 4183 to 4729 598 to 50   AAA   549/549
(100 %)
6 diff
(99.0 %id)
AU156739 placenta .b 4209 to 4729 522 to 1   tiling clone,   522/522
(100 %)
10 diff
(98.1 %id)
DB378424 placenta .b 4209 to 4723 516 to 1       516/516
(100 %)
14 diff
(97.3 %id)
R61386 whole brain .b 4319 to 4729 433 to 12   tiling clone, AAA   422/422
(100 %)
15 diff
(96.5 %id)
AA279215 germinal center B cell .b 4324 to 4729 406 to 1       406/406
(100 %)
2 diff
(99.6 %id)
H09321 whole brain .b 4362 to 4721 380 to 11   AAA   370/445
(83 %)
11 diff
(97.6 %id)
AW576224 lymph .b 4453 to 4729 294 to 18   AAA   277/277
(100 %)
3 diff
(99.0 %id)
F03394 brain, total brain .b 4515 to 4729 215 to 1       215/215
(100 %)
1 diff
(99.6 %id)
BX648041 human uterus endothel primary cell culture .c 1 to 4932 5 to 4931 N377K K378C C379D D381L L382D ... tiling clone, available from DKFZ,   4931/4939
(99 %)
21 diff
(99.6 %id)
BE563810 adenocarcinoma, Pancreas .c 3545 to 4376 40 to 870       831/1009
(82 %)
38 diff
(96.3 %id)
BE812719 amnion_normal .c 3548 to 3950 27 to 428       402/428
(93 %)
6 diff
(98.6 %id)
CR617655 Neuroblastoma Cot 25-normalized .c 3601 to 4900 1 to 1300   tiling clone,   1300/1300
(100 %)
0 diff
(100 %id)
AL523281 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 3601 to 4292 1 to 684   fully sequenced,   684/684
(100 %)
2 diff
(99.8 %id)
AW675199 cervical carcinoma cell line, cervix .c 3608 to 4099 1 to 492       492/492
(100 %)
2 diff
(99.6 %id)
BF985269 placenta_normal .c 3647 to 4218 14 to 583       570/583
(97 %)
6 diff
(99.0 %id)
BF670081 brain, primitive neuroectoderm .c 3668 to 4333 1 to 660       660/900
(73 %)
12 diff
(98.7 %id)
BF700601 brain, primitive neuroectoderm .c 3668 to 4377 1 to 719       719/827
(86 %)
41 diff
(95.1 %id)
BM453244 melanotic melanoma, skin .c 3694 to 4519 1 to 838       838/901
(93 %)
19 diff
(97.9 %id)
BQ346067 nervous_tumor .c 3730 to 4179 15 to 465       451/465
(96 %)
6 diff
(98.8 %id)
AA309822 aorta .c 3768 to 4172 1 to 407       407/407
(100 %)
2 diff
(99.6 %id)
AW960657   .c 3769 to 4398 1 to 629       629/629
(100 %)
2 diff
(99.7 %id)
BG571963 placenta .c 3786 to 4368 1 to 583       583/583
(100 %)
0 diff
(100 %id)
H65178 nose, olfactory epithelium .c 3812 to 4122 1 to 320       320/323
(99 %)
10 diff
(97.0 %id)
BG534410 lung .c 3858 to 4436 1 to 579       579/579
(100 %)
3 diff
(99.5 %id)
BG536197 lung .c 3870 to 4707 1 to 844       844/846
(99 %)
42 diff
(95.1 %id)
BE925194 amnion_normal .c 3940 to 4270 7 to 335       329/335
(98 %)
6 diff
(98.3 %id)
BQ292956 amnion_normal .c 3948 to 4235 1 to 297       297/302
(98 %)
23 diff
(92.4 %id)
BF848942 lung_normal .c 3955 to 4356 7 to 410       404/410
(98 %)
6 diff
(98.6 %id)
AV751623 Pituitary .c 3993 to 4539 1 to 550       550/709
(77 %)
14 diff
(98.1 %id)
TI_154111350   .c 4002 to 4939 1023 to 81   AAA   943/1032
(91 %)
32 diff
(96.9 %id)
BF701619 brain, primitive neuroectoderm .c 4004 to 4760 1 to 756       756/758
(99 %)
38 diff
(95.0 %id)
BF671955 muscle (skeletal) .c 4015 to 4580 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
CD721877 eye, lacrimal gland .c 4034 to 4639 1 to 606       606/606
(100 %)
3 diff
(99.6 %id)
CD721896 eye, lacrimal gland .c 4034 to 4643 1 to 610       610/610
(100 %)
3 diff
(99.6 %id)
TI_154133990   .c 4034 to 4932 998 to 98   AAA   901/901
(100 %)
22 diff
(97.6 %id)
TI_154111351   .c 4035 to 4939 971 to 79   AAA   893/988
(90 %)
20 diff
(98.0 %id)
TI_149285487   .c 4039 to 4939 993 to 97   AAA   897/1118
(80 %)
17 diff
(98.5 %id)
FN137257 breast carcinoma .c 4069 to 4150 1 to 82       82/82
(100 %)
3 diff
(96.4 %id)
T24972   .c 4114 to 4277 23 to 178       156/178
(87 %)
6 diff
(96.7 %id)
BI859389 breast, mammary adenocarcinoma, cell line .c 4124 to 4822 17 to 716       700/717
(97 %)
10 diff
(98.7 %id)
TI_57190683   .c 4124 to 4822 72 to 771       700/717
(97 %)
10 diff
(98.7 %id)
BM997079 Chondrosarcoma, Left Pubic Bone .c 4143 to 4933 807 to 19   AAA   789/789
(100 %)
6 diff
(99.3 %id)
BX374280   .c 4162 to 4904 741 to 1       741/916
(80 %)
23 diff
(97.5 %id)
BF760382 colon .c 4186 to 4504 1 to 314       314/314
(100 %)
9 diff
(97.2 %id)
TI_149297834   .c 4202 to 4933 842 to 121   AAA   722/888
(81 %)
46 diff
(94.9 %id)
R73746 placenta .c 4224 to 4578 1 to 357   fully sequenced,   357/357
(100 %)
8 diff
(97.8 %id)
TI_149307326   .c 4235 to 4932 789 to 92   AAA   698/920
(75 %)
12 diff
(98.7 %id)
CA448383 Chondrosarcoma, Left Pubic Bone .c 4238 to 4939 718 to 17   AAA   702/702
(100 %)
3 diff
(99.6 %id)
BQ016333 lung, Metastatic Chondrosarcoma .c 4243 to 4932 709 to 19   AAA   691/691
(100 %)
4 diff
(99.5 %id)
CA448382 Chondrosarcoma, Left Pubic Bone .c 4246 to 4939 710 to 17   AAA   694/694
(100 %)
4 diff
(99.5 %id)
CA411980 Chondrosarcoma Grade II, Left Pelvis .c 4246 to 4939 711 to 19   AAA   693/693
(100 %)
6 diff
(99.2 %id)
BG026361 Bone, osteosarcoma, cell line .c 4248 to 4926 1 to 678       678/944
(71 %)
10 diff
(99.0 %id)
BM984907 lung .c 4248 to 4939 709 to 17   AAA   693/693
(100 %)
4 diff
(99.5 %id)
AL523280 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .c 4262 to 4886 624 to 15   fully sequenced,   610/624
(97 %)
12 diff
(98.1 %id)
BF807630 colon_ins .c 4314 to 4630 13 to 330       318/330
(96 %)
6 diff
(98.2 %id)
BE827832 lung_tumor .c 4328 to 4655 1 to 327       327/327
(100 %)
4 diff
(98.8 %id)
AW947102 lung_tumor .c 4337 to 4655 1 to 319       319/319
(100 %)
5 diff
(98.5 %id)
BM993910 Bone, Subchondral Bone .c 4339 to 4932 612 to 19   AAA   594/599
(99 %)
5 diff
(99.2 %id)
CN479445 Bone, Subchondral Bone .c 4339 to 4932 612 to 19   AAA   594/599
(99 %)
5 diff
(99.2 %id)
BM979132 lung, Primary Lung Epithelial Cells .c 4345 to 4932 607 to 19   AAA   589/589
(100 %)
7 diff
(98.9 %id)
BF594662 brain, glioblastoma (pooled) .c 4367 to 4939 574 to 1       574/574
(100 %)
6 diff
(99.0 %id)
BG054957 brain, glioblastoma (pooled) .c 4374 to 4930 558 to 1       558/558
(100 %)
5 diff
(99.2 %id)
BF196990 pooled .c 4383 to 4939 557 to 1       557/557
(100 %)
2 diff
(99.7 %id)
N40318 melanocyte .c 4401 to 4783 1 to 388       388/392
(98 %)
12 diff
(97.0 %id)
AA447838 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 4401 to 4898 1 to 499       499/499
(100 %)
3 diff
(99.4 %id)
AA745981 2 pooled tumors (clear cell type), Kidney .c 4402 to 4933 535 to 4       532/535
(99 %)
0 diff
(100 %id)
BE855915 brain, glioblastoma (pooled) .c 4404 to 4939 536 to 1       536/536
(100 %)
3 diff
(99.5 %id)
N35758 melanocyte .c 4450 to 4860 1 to 419       419/501
(83 %)
9 diff
(98.3 %id)
BF197194 brain, glioblastoma (pooled) .c 4456 to 4933 479 to 1       479/479
(100 %)
3 diff
(99.4 %id)
AW190522 adenocarcinoma, Pancreas .c 4459 to 4932 491 to 18   AAA   474/474
(100 %)
10 diff
(97.9 %id)
TI_157612174   .c 4472 to 4933 551 to 90   AAA   462/462
(100 %)
12 diff
(97.5 %id)
AA478437 ovarian tumor, ovary .c 4481 to 4931 451 to 1       451/451
(100 %)
2 diff
(99.6 %id)
AI338165 lung .c 4481 to 4932 452 to 1       452/452
(100 %)
3 diff
(99.4 %id)
AI744191 ovary, tumor, 5 pooled (see description) .c 4481 to 4932 455 to 4       452/455
(99 %)
0 diff
(100 %id)
AI423196 brain, glioblastoma (pooled) .c 4483 to 4932 451 to 1       451/451
(100 %)
3 diff
(99.4 %id)
BF060996 pooled .c 4492 to 4933 443 to 1       443/443
(100 %)
3 diff
(99.4 %id)
BG413364 Kidney .c 4514 to 4932 423 to 4       420/423
(99 %)
0 diff
(100 %id)
AW263144 pooled .c 4521 to 4932 413 to 2       412/413
(99 %)
0 diff
(100 %id)
AI627568 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 4524 to 4933 413 to 4       410/413
(99 %)
0 diff
(100 %id)
AI360799 brain, glioblastoma (pooled) .c 4525 to 4939 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AI360842 brain, glioblastoma (pooled) .c 4525 to 4939 435 to 21   AAA   415/415
(100 %)
1 diff
(99.8 %id)
AW674632 cervical carcinoma cell line, cervix .c 4533 to 4932 403 to 4       400/403
(99 %)
0 diff
(100 %id)
AI084758 senescent fibroblast .c 4537 to 4934 409 to 10       400/409
(97 %)
0 diff
(100 %id)
AW572349 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 4537 to 4940 407 to 4   tiling clone,   404/407
(99 %)
0 diff
(100 %id)
AA910809 carcinoid, lung .c 4541 to 4932 416 to 25   AAA   392/392
(100 %)
0 diff
(100 %id)
AI091525 pooled .c 4546 to 4932 394 to 8       387/394
(98 %)
0 diff
(100 %id)
H65122 nose, olfactory epithelium .c 4550 to 4911 366 to 1       366/367
(99 %)
11 diff
(97.1 %id)
AA765765 germinal center B cell .c 4562 to 4940 387 to 9       379/387
(97 %)
0 diff
(100 %id)
R73663 placenta .c 4576 to 4906 338 to 1   fully sequenced,   338/338
(100 %)
8 diff
(97.7 %id)
AA740549 2 pooled tumors (clear cell type), Kidney .c 4576 to 4932 362 to 6       357/363
(98 %)
0 diff
(100 %id)
AI536885 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 4576 to 4940 365 to 1       365/365
(100 %)
1 diff
(99.8 %id)
BF807673 colon_ins .c 4581 to 4817 276 to 513       443/513
(86 %)
35 diff
(93.2 %id)
AA873412 Kidney .c 4583 to 4939 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
AA122400.
matches multiple genes
  .c 4596 to 4931 359 to 24   AAA also hits gene MYCT1 336/336
(100 %)
1 diff
(99.8 %id)
CA443697 lung, Metastatic Chondrosarcoma .c 4613 to 4931 337 to 19   AAA   319/320
(99 %)
3 diff
(99.1 %id)
AA687921 normal prostate, Prostate .c 4614 to 4932 319 to 1       319/319
(100 %)
0 diff
(100 %id)
AA814628 brain, substantia nigra .c 4618 to 4939 337 to 16   AAA   322/322
(100 %)
1 diff
(99.7 %id)
AW196743 adenocarcinoma, Pancreas .c 4697 to 4932 247 to 12   AAA   236/236
(100 %)
7 diff
(97.1 %id)
Z38985 brain, total brain .c 4717 to 4935 223 to 5       219/223
(98 %)
0 diff
(100 %id)
AI864842 lymph node, lymphoma, follicular mixed small and largecell .c 4747 to 4931 211 to 27   AAA   185/185
(100 %)
1 diff
(99.5 %id)
AI200147 placenta .c 4748 to 4940 193 to 1       193/193
(100 %)
2 diff
(99.0 %id)
CN391135 embryonic stem cells, DMSO-treated H9 cellline .c 4757 to 4932 1 to 176   AAA   176/176
(100 %)
1 diff
(99.5 %id)
EH349438   .c 4857 to 4920 1 to 63       63/63
(100 %)
3 diff
(95.3 %id)
AL549950 placenta, Placenta Cot 25-normalized .d 1 to 1512 1 to 925   tiling clone,   892/963
(92 %)
31 diff
(96.8 %id)
BU150121 dorsal root ganglia .d 421 to 1246 1 to 829   tiling clone,   829/946
(87 %)
23 diff
(97.6 %id)
BG013785 placenta_normal .d 691 to 1025 26 to 358       333/358
(93 %)
6 diff
(98.4 %id)
DW414472 Liver .d 844 to 1143 316 to 17   tiling clone,   300/316
(94 %)
0 diff
(100 %id)
AL573950 placenta, Placenta Cot 25-normalized .d 3268 to 3195 320 to 414   tiling clone,   733/826
(88 %)
27 diff
(96.8 %id)
CN413540 embryonic stem cells, cell lines H1, H7, andH9 .e 1 to 573 1 to 574   tiling clone,   574/574
(100 %)
3 diff
(99.5 %id)
AW500243 lymph .e 452 to 941 1 to 490   tiling clone,   490/490
(100 %)
6 diff
(98.8 %id)
TI_154154374   .e 459 to 1104 80 to 722   tiling clone,   643/644
(99 %)
25 diff
(96.2 %id)
AW576255 lymph .e 3621 to 4233 630 to 18   tiling clone, AAA   613/613
(100 %)
0 diff
(100 %id)
DA509533 brain .f 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
BX349242   .f 121 to 973 1 to 850 G193X H198P I199S N200M E201N ... tiling clone,   850/853
(99 %)
13 diff
(98.5 %id)
BG325473 Kidney, renal cell adenocarcinoma .f 199 to 967 1 to 765   tiling clone,   765/933
(81 %)
18 diff
(98.1 %id)
CD519484 White Matter .g -11 to 807 1 to 825 exact tiling clone,   825/882
(93 %)
9 diff
(99.0 %id)
BG570023 lung .g 57 to 761 1 to 711 N96K T126N E128R Q129T E130R ...     711/728
(97 %)
30 diff
(95.9 %id)
AW953110   .g 65 to 714 11 to 659 exact     649/660
(98 %)
14 diff
(97.9 %id)
EL736662 mixed .g 134 to 647 11 to 524       516/581
(88 %)
7 diff
(98.8 %id)
TI_1948233139   .g 134 to 647 145 to 658   fully sequenced,   516/556
(92 %)
7 diff
(98.8 %id)
TI_1948233290   .g 134 to 647 153 to 666   fully sequenced,   516/555
(92 %)
7 diff
(98.8 %id)
TI_1948233445   .g 134 to 647 143 to 656   fully sequenced,   516/555
(92 %)
7 diff
(98.8 %id)
BG541538 lung .g 136 to 796 167 to 845 K152*     845/845
(100 %)
22 diff
(97.4 %id)
BC020686 lung .g 136 to 1255 151 to 1270 exact tiling clone, available from MGC, AAA   1270/1270
(100 %)
1 diff
(100.0 %id)
BG570534 lung .g 136 to 657 152 to 670 I54M V55S P56Q G57A N58T ... available from MGC,   670/670
(100 %)
4 diff
(99.5 %id)
BC050740 Peripheral Nervous System, sympathetictrunk .g 136 to 1255 156 to 1275 Q93* tiling clone, available from MGC, AAA   1275/1275
(100 %)
2 diff
(99.9 %id)
BQ723558 sympathetic trunk .g 136 to 897 154 to 916 Q93* available from MGC,   916/920
(99 %)
23 diff
(97.5 %id)
NM_182966.3   .g 136 to 1255 180 to 1299 exact RefSeq, AAA   1299/1299
(100 %)
0 diff
(100 %id)
BQ721949 sympathetic trunk .g 199 to 1060 1 to 866       866/871
(99 %)
7 diff
(99.2 %id)
BG541495 lung .g 207 to 929 1 to 742       742/869
(85 %)
36 diff
(95.9 %id)
AI066554 pooled .g 232 to 706 483 to 9       475/483
(98 %)
1 diff
(99.8 %id)
TI_1948233291   .g 291 to 647 489 to 133   fully sequenced,   357/385
(92 %)
0 diff
(100 %id)
AI457601 pooled .g 472 to 1030 573 to 15   AAA   559/562
(99 %)
1 diff
(99.9 %id)
AA369826 Prostate .g 501 to 740 1 to 240       240/240
(100 %)
0 diff
(100 %id)
AA370785 Prostate .g 501 to 767 1 to 267       267/267
(100 %)
0 diff
(100 %id)
AW957103   .g 502 to 1123 1 to 625       625/625
(100 %)
7 diff
(98.9 %id)
TI_1948233446   .g 552 to 647 225 to 127   fully sequenced,   99/225
(44 %)
0 diff
(100 %id)
TI_1948233140   .g 575 to 647 203 to 131   fully sequenced,   73/203
(35 %)
0 diff
(100 %id)
AA903081 leiomyosarcoma, soft tissue .g 638 to 704 75 to 9       67/75
(89 %)
0 diff
(100 %id)
AI927441 normal prostate, Prostate .g 715 to 1252 552 to 14   AAA   539/539
(100 %)
7 diff
(98.8 %id)
H06199 whole brain .g 744 to 1256 515 to 8       508/517
(98 %)
0 diff
(100 %id)
BX092614 whole brain .g 765 to 1255 506 to 15   AAA   492/492
(100 %)
1 diff
(99.8 %id)
AA369825 Prostate .g 900 to 1257 359 to 1       359/361
(99 %)
1 diff
(99.8 %id)
Z39587 brain, total brain .g 950 to 1255 306 to 1       306/306
(100 %)
0 diff
(100 %id)
AA349429 brain .g 1033 to 1255 223 to 1       223/223
(100 %)
0 diff
(100 %id)
AW816129 stomach .h-u 1 to 507 1 to 507   tiling clone,   507/507
(100 %)
13 diff
(97.5 %id)
AW816074 stomach .h-u 5 to 578 15 to 587   tiling clone,   573/587
(97 %)
6 diff
(99.0 %id)
T85086 liver and spleen .h-u 451 to 632 1 to 182       182/182
(100 %)
2 diff
(99.0 %id)
R84874 liver and spleen .h-u 452 to 870 1 to 424   tiling clone,   424/503
(84 %)
13 diff
(97.5 %id)
R85808 liver and spleen .h-u 895 to 1238 351 to 8   tiling clone,   344/351
(98 %)
0 diff
(100 %id)
T85087 liver and spleen .h-u 944 to 1248 307 to 1   tiling clone,   307/314
(97 %)
10 diff
(96.9 %id)
AU099532   .i 136 to 275 161 to 300       300/300
(100 %)
1 diff
(99.7 %id)
BP262776 small intestine .i 136 to 557 161 to 582 V141G tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
BG057400 blood, lymphocyte .j 1 to 521 536 to 4 T4I H8Q Q10K P11A S13F ... tiling clone,   527/536
(98 %)
14 diff
(97.4 %id)
AI696258 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .j 285 to 521 255 to 19   AAA   237/237
(100 %)
6 diff
(97.5 %id)
DA673642   .k 1 to 582 2 to 583 exact tiling clone, capped   582/582
(100 %)
0 diff
(100 %id)
DB149729 thymus .k 43 to 582 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
CB997243 placenta, pre-eclamptic placenta .k 45 to 833 28 to 823   tiling clone,   796/823
(96 %)
29 diff
(96.5 %id)
DA318112 hippocampus .k 50 to 558 2 to 509   capped   508/508
(100 %)
2 diff
(99.7 %id)
BF898225 marrow .k 423 to 789 372 to 5   tiling clone, Submitted on the opposite strand 368/372
(98 %)
0 diff
(100 %id)
TI_57168689   .l 1 to 807 29 to 839 V12A G13R K14E C15M Q17T ... tiling clone,   811/844
(96 %)
15 diff
(98.3 %id)
BI832988 pooled pancreas and spleen .l 3 to 807 1 to 809 V12A G13R K14E C15M Q17T ... tiling clone,   809/814
(99 %)
10 diff
(98.8 %id)
DA673104   .l 32 to 605 2 to 575   tiling clone, capped   574/580
(98 %)
1 diff
(99.9 %id)
CB989886 Human Placenta, placenta .m 1 to 756 29 to 784 exact tiling clone,   756/784
(96 %)
10 diff
(98.8 %id)
CB990526 Human Placenta, placenta .m 1 to 761 29 to 788 exact tiling clone,   760/788
(96 %)
13 diff
(98.4 %id)
BG484094 lung .n 1 to 602 6 to 616 exact tiling clone,   616/841
(73 %)
23 diff
(97.3 %id)
TI_57149617   .o 1 to 600 27 to 625 D2G V3M tiling clone,   599/625
(95 %)
7 diff
(98.9 %id)
BI759596 pooled colon, kidney, stomach .o 9 to 600 1 to 591   tiling clone,   591/591
(100 %)
1 diff
(99.9 %id)
DA862890 placenta .p 1 to 586 2 to 587 exact tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
BE769105 prostate_tumor .q-u 1 to 539 7 to 544 F2* tiling clone,   538/544
(98 %)
6 diff
(98.9 %id)
CD685065 normal nasopharynx .r 1 to 470 1 to 475 R16Q G17Q K18G H19N E20M ... tiling clone,   475/475
(100 %)
11 diff
(97.7 %id)
AL698450 human skeletal muscle .s 1 to 467 8 to 474 exact tiling clone,   474/474
(100 %)
2 diff
(99.6 %id)
BF848654 lung_normal .t-u 1 to 372 22 to 393 exact tiling clone,   372/393
(94 %)
6 diff
(98.5 %id)
BP229307 brain Gene NEDD9, variant not shown         Suspected internal deletion, this clone was ignored    
BP229336 brain Gene NEDD9, variant not shown         Suspected internal deletion, this clone was ignored    
AU105862   Gene NEDD9, variant not shown              
AV654058 corresponding non cancerous liver tissue Gene NEDD9, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand    
AL597699   Gene NEDD9, variant not shown              
BE832520 marrow Gene NEDD9, variant not shown         Suspected internal deletion, this clone was ignored    
AK124210 thymus Gene NEDD9, variant not shown       available from FLJ, This clone was ignored    
DB314718   Gene NEDD9, variant not shown              
DA468999   Gene NEDD9, variant not shown       capped      
DB319537 lung Gene NEDD9, variant not shown         This clone was ignored    
DA589393 lung Gene NEDD9, variant not shown       capped This clone was ignored    
DA592436 lung Gene NEDD9, variant not shown       capped      
DB127396 thymus Gene NEDD9, variant not shown       capped      
DB344362 thymus Gene NEDD9, variant not shown              
CD695225 normal nasopharynx Gene NEDD9, variant not shown         This clone was ignored    
DW412728 Liver Gene NEDD9, variant not shown              
DB308676 hippocampus Gene NEDD9, variant not shown         This clone was ignored    
DA314483 hippocampus Gene NEDD9, variant not shown       capped This clone was ignored    
T39292 lung Gene NEDD9, variant not shown         This clone was ignored    
T40509 lung Gene NEDD9, variant not shown         This clone was ignored    
T94294 lung Gene NEDD9, variant not shown              
T94644 lung Gene NEDD9, variant not shown              
AA769045 germinal center B cell Gene NEDD9, variant not shown         This clone was ignored    
AI570267 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene NEDD9, variant not shown              
AW139722   Gene NEDD9, variant not shown       AAA      
AW614208 Kidney Gene NEDD9, variant not shown         Suspected internal deletion, this clone was ignored    
CA844273 Pancreas, Purified pancreatic islet Gene NEDD9, variant not shown         This clone was ignored    
CA848955 Pancreas, Purified pancreatic islet Gene NEDD9, variant not shown         This clone was ignored    
DB162416 thymus Gene NEDD9, variant not shown       capped This clone was ignored    
DB346949 thymus Gene NEDD9, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l, .m, .n, .o, .p, .q-u, .r, .s, .t-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI