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Gene NEDD8_TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
1130 representative clones for gene NEDD8_ back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK300118 placenta .a 1 to 2739 2 to 2740   tiling clone,   2740/2740
(100 %)
1 diff
(100.0 %id)
DA547692   .a 657 to 1221 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BU624905 cell lines, Enchondroma .a 684 to 1380 714 to 19   AAA   696/696
(100 %)
1 diff
(99.9 %id)
CR614922 Placenta Cot 25-normalized .a 888 to 2693 1 to 1806       1806/1806
(100 %)
0 diff
(100 %id)
BQ221987 epithelioid carcinoma, Pancreas .a 904 to 1782 1 to 880       880/882
(99 %)
9 diff
(99.0 %id)
CN484799 eye .a 959 to 1587 1 to 629       629/629
(100 %)
0 diff
(100 %id)
AI638805 pooled germ cell tumors .a 994 to 1565 589 to 18   AAA   572/572
(100 %)
0 diff
(100 %id)
BX367924 Placenta Cot 25-normalized .a 997 to 1814 1 to 812       812/861
(94 %)
20 diff
(97.7 %id)
BX347165 Placenta Cot 25-normalized .a 1095 to 1935 843 to 1       843/847
(99 %)
7 diff
(99.2 %id)
BP300148   .a 1185 to 1767 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DB094306 testis .a 1371 to 1933 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CD243164 brain, Pituitary .a 1374 to 2090 1 to 719       719/932
(77 %)
9 diff
(99.1 %id)
BX326236 Placenta Cot 25-normalized .a 1386 to 2260 1 to 879       879/879
(100 %)
12 diff
(98.7 %id)
CA489196   .a 1413 to 2260 1 to 857       857/892
(96 %)
13 diff
(98.6 %id)
BM726091 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1589 to 2170 1 to 582   fully sequenced,   582/582
(100 %)
0 diff
(100 %id)
AB209476 brain .a 2051 to 6401 1 to 4351 A655V P722A P895S tiling clone,   4351/4351
(100 %)
4 diff
(100.0 %id)
CA424205 cell lines, Chondrosarcoma .a 2098 to 2748 663 to 13   AAA   651/651
(100 %)
0 diff
(100 %id)
BM682525 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2140 to 2737 598 to 1   fully sequenced,   598/598
(100 %)
4 diff
(99.4 %id)
AW296244   .a 2186 to 2748 574 to 12   AAA   563/563
(100 %)
0 diff
(100 %id)
BM193489 leukopheresis .a 2344 to 2750 422 to 16       407/423
(96 %)
0 diff
(100 %id)
DB097528 testis .a 2933 to 3512 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
NM_024658.3   .a 2978 to 6583 1 to 3606   RefSeq,   3606/3606
(100 %)
6 diff
(99.9 %id)
BC136759 Brain, cerebellum, PCR rescued clones .a 3027 to 6491 1 to 3465       3465/3465
(100 %)
0 diff
(100 %id)
DA462179 tongue, tumor tissue .a 3044 to 3620 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB096986 testis .a 3044 to 3614 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB099704 testis .a 3044 to 3613 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BP200435 amygdala .a 3052 to 3633 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA403924 thalamus .a 3053 to 3606 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA503340 brain .a 3053 to 3625 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB077176 testis .a 3053 to 3606 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB077378 testis .a 3053 to 3613 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB083292 testis .a 3053 to 3603 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB086165 testis .a 3053 to 3615 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB087102 testis .a 3053 to 3626 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB092404 testis .a 3053 to 3608 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB099991 testis .a 3053 to 3636 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB098064 testis .a 3055 to 3627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB228757 trachea .a 3057 to 3627 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BP350922   .a 3072 to 3654 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DB162797 thymus .a 3072 to 3654 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
AK057277 testis .a 3074 to 6570 1 to 3497   available from FLJ,   3497/3497
(100 %)
2 diff
(100.0 %id)
DB060853 testis .a 3074 to 3635 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA027482   .a 3075 to 3638 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA442359 tongue, tumor tissue .a 3075 to 3665 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA741911   .a 3075 to 3627 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA783160 brain .a 3075 to 3649 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA858972 placenta .a 3075 to 3623 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB067359 testis .a 3075 to 3625 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB067671 testis .a 3075 to 3641 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB078230 testis .a 3075 to 3646 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB080280 testis .a 3075 to 3631 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB091212 testis .a 3075 to 3630 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB094594 testis .a 3075 to 3624 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB097334 testis .a 3075 to 3665 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB099432 testis .a 3075 to 3646 8 to 579   capped   572/572
(100 %)
0 diff
(100 %id)
DB135326 thymus .a 3075 to 3628 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB286606 uterus .a 3075 to 3634 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BC110804 Skin, melanotic melanoma. .a 3076 to 6576 1 to 3501   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 3501/3501
(100 %)
0 diff
(100 %id)
DA458323 tongue, tumor tissue .a 3077 to 3632 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB088059 testis .a 3081 to 3634 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA408816 thalamus .a 3086 to 3733 2 to 649   capped   648/648
(100 %)
0 diff
(100 %id)
DA725643   .a 3086 to 3642 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB065748 testis .a 3086 to 3658 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB085339 testis .a 3086 to 3637 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB090966 testis .a 3086 to 3670 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB091317 testis .a 3086 to 3641 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB096927 testis .a 3086 to 3653 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB099757 testis .a 3086 to 3659 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
AB208897 brain .a 3088 to 6576 1 to 3488       3488/3488
(100 %)
3 diff
(100.0 %id)
DA854269 placenta .a 3088 to 3679 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
BU164787 eye, retinoblastoma .a 3089 to 3949 1 to 861       861/863
(99 %)
4 diff
(99.6 %id)
BQ220620 melanotic melanoma, skin .a 3091 to 3949 1 to 863       863/891
(96 %)
14 diff
(98.5 %id)
BX248267 neuroblastoma .a 3096 to 6539 1 to 3444       3444/3444
(100 %)
0 diff
(100 %id)
BX354066 Neuroblastoma Cot 25-normalized .a 3096 to 4037 1 to 940       940/940
(100 %)
2 diff
(99.8 %id)
BP222913   .a 3097 to 3678 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BQ070636 brain, neuroblastoma, cell line .a 3098 to 4049 1 to 963       963/1014
(94 %)
24 diff
(97.7 %id)
BQ889862 brain, neuroblastoma, cell line .a 3098 to 3949 1 to 859       859/892
(96 %)
13 diff
(98.6 %id)
DA719852   .a 3098 to 3656 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BP236341 coronary artery .a 3099 to 3686 1 to 588       588/588
(100 %)
0 diff
(100 %id)
BP247528 Kidney .a 3099 to 3687 1 to 589       589/589
(100 %)
0 diff
(100 %id)
BP313671 mammary gland .a 3099 to 3680 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP314192 mammary gland .a 3099 to 3680 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP314423 mammary gland .a 3099 to 3680 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP315032 mammary gland .a 3099 to 3680 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP315426 mammary gland .a 3099 to 3680 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BM788542 stomach .a 3099 to 3755 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BP356964 mammary gland .a 3099 to 3680 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA024218   .a 3100 to 3662 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA043792 bladder .a 3100 to 3672 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA114537 cerebellum .a 3100 to 3650 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA128187 cerebellum .a 3100 to 3665 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA317232 hippocampus .a 3100 to 3651 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA395911 thalamus .a 3100 to 3694 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA439898 tongue, tumor tissue .a 3100 to 3673 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA447138 tongue, tumor tissue .a 3100 to 3685 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA460184 tongue, tumor tissue .a 3100 to 3658 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA725132   .a 3100 to 3651 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA725504   .a 3100 to 3660 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA740613   .a 3100 to 3651 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP315603 mammary gland .a 3100 to 3681 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA834718 placenta .a 3100 to 3655 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA851303 placenta .a 3100 to 3659 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA859942 placenta .a 3100 to 3653 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA906020   .a 3100 to 3668 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA909480   .a 3100 to 3657 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA945916 Spleen .a 3100 to 3666 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB019715 testis .a 3100 to 3660 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB031598 testis .a 3100 to 3702 2 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
DB076642 testis .a 3100 to 3676 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB077955 testis .a 3100 to 3666 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB078222 testis .a 3100 to 3656 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB082733 testis .a 3100 to 3663 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB083465 testis .a 3100 to 3657 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB084622 testis .a 3100 to 3660 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB084735 testis .a 3100 to 3660 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB087414 testis .a 3100 to 3666 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB090137 testis .a 3100 to 3657 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB091023 testis .a 3100 to 3659 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB094227 testis .a 3100 to 3657 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB094472 testis .a 3100 to 3662 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB096768 testis .a 3100 to 3683 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB098805 testis .a 3100 to 3683 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB099043 testis .a 3100 to 3686 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB099446 testis .a 3100 to 3672 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB100473 testis .a 3100 to 3674 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB224846 trachea .a 3100 to 3661 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB225494 trachea .a 3100 to 3675 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB227187 trachea .a 3100 to 3680 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB230486 trachea .a 3100 to 3695 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DB231139 trachea .a 3100 to 3658 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB233323 trachea .a 3100 to 3693 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DB235538 trachea .a 3100 to 3680 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB239397 trachea .a 3100 to 3678 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB286900 uterus .a 3100 to 3654 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BU146689 brain, neuroblastoma, cell line .a 3101 to 4006 1 to 912       912/922
(98 %)
15 diff
(98.4 %id)
DA713042   .a 3101 to 3650 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BP313422 mammary gland .a 3101 to 3682 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA910978   .a 3101 to 3651 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB087053 testis .a 3101 to 3676 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BP363190 lung .a 3101 to 3682 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB222160 trachea .a 3101 to 3678 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AF411122   .a 3107 to 6396 1 to 3290       3290/3290
(100 %)
2 diff
(100.0 %id)
BM463405 embryonal carcinoma, cell line, testis .a 3108 to 4034 1 to 929       929/929
(100 %)
2 diff
(99.8 %id)
CR592033 HeLa cells Cot 25-normalized .a 3111 to 6547 1 to 3437       3437/3437
(100 %)
0 diff
(100 %id)
BQ059426 lymph, lymphoma, cell line .a 3115 to 4076 1 to 965       965/967
(99 %)
9 diff
(99.1 %id)
BU147467 brain, neuroblastoma, cell line .a 3115 to 3947 1 to 845       845/862
(98 %)
13 diff
(98.5 %id)
BQ434853 melanotic melanoma, skin .a 3116 to 3760 1 to 647       647/834
(77 %)
3 diff
(99.7 %id)
BU186741 embryonal carcinoma, cell line, testis .a 3118 to 3949 1 to 844       844/885
(95 %)
13 diff
(98.6 %id)
CR983594 T-Lymphocytes .a 3120 to 3798 1 to 679       679/680
(99 %)
1 diff
(99.9 %id)
CN402947 embryonic stem cells, cell lines H1, H7, andH9 .a 3137 to 3728 1 to 592       592/592
(100 %)
0 diff
(100 %id)
CN402956 embryonic stem cells, cell lines H1, H7, andH9 .a 3154 to 3862 1 to 710       710/710
(100 %)
1 diff
(99.9 %id)
DB097385 testis .a 3193 to 3790 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
BU170173 embryonal carcinoma, cell line, testis .a 3268 to 4078 1 to 822       822/888
(92 %)
10 diff
(98.9 %id)
BX408058 neuroblastoma .a 3343 to 3949 1 to 607       607/824
(73 %)
1 diff
(99.9 %id)
CX787050 human embryonic stem cells .a 3440 to 4195 1 to 756       756/756
(100 %)
0 diff
(100 %id)
CX784799 human embryonic stem cells .a 3444 to 4250 1 to 807       807/807
(100 %)
0 diff
(100 %id)
DB075695 testis .a 3729 to 4320 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
BI087419 cervix .a 3747 to 4513 1 to 762       762/764
(99 %)
7 diff
(99.1 %id)
DA911957   .a 3757 to 4332 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
AK026991   .a 3804 to 6574 1 to 2773   available from FLJ, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 2773/2774
(99 %)
11 diff
(99.7 %id)
BU845619 ovary, teratocarcinoma, cell line .a 3945 to 4748 1 to 805       805/925
(87 %)
16 diff
(98.3 %id)
DB047911 testis .a 3953 to 4507 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA837101 placenta .a 3957 to 4513 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BC003690 Placenta, choriocarcinoma .a 3991 to 6570 1 to 2580   available from MGC, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 2580/2580
(100 %)
0 diff
(100 %id)
DA816852   .a 4032 to 4603 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
CR457367   .a 4081 to 6353 1 to 2273       2273/2274
(99 %)
4 diff
(99.9 %id)
CV024438 mixed .a 4081 to 4724 1 to 644       644/644
(100 %)
0 diff
(100 %id)
BQ962842 leiomyosarcoma, uterus .a 4092 to 4980 1 to 899       899/903
(99 %)
24 diff
(97.4 %id)
BM453288 melanotic melanoma, skin .a 4512 to 5377 1 to 875       873/882
(98 %)
13 diff
(98.6 %id)
CB137824 Liver .a 4599 to 5207 1 to 609       609/609
(100 %)
0 diff
(100 %id)
BU542566 carcinoma, cell line, Prostate .a 4643 to 5510 1 to 877       877/878
(99 %)
18 diff
(98.0 %id)
BU552639 carcinoma, cell line, Prostate .a 4643 to 5546 1 to 904       904/905
(99 %)
4 diff
(99.6 %id)
BU857759 adenocarcinoma, cell line, breast .a 4706 to 5489 1 to 795       795/898
(88 %)
14 diff
(98.5 %id)
BX368293 Neuroblastoma Cot 25-normalized .a 4827 to 5706 881 to 1       881/881
(100 %)
9 diff
(99.0 %id)
BQ431862 melanotic melanoma, skin .a 4973 to 5748 1 to 780       780/809
(96 %)
5 diff
(99.4 %id)
BU857892 adenocarcinoma, cell line, breast .a 5000 to 5883 890 to 1     Submitted on the opposite strand 890/916
(97 %)
14 diff
(98.5 %id)
AK027871   .a 5010 to 6578 1 to 1569   available from FLJ,   1569/1569
(100 %)
1 diff
(100.0 %id)
DA900747   .a 5011 to 5755 2 to 745   capped   744/745
(99 %)
6 diff
(99.2 %id)
BE408797 choriocarcinoma, placenta .a 5017 to 5570 1 to 554       554/554
(100 %)
0 diff
(100 %id)
CK821452 Pancreas, Purified pancreatic islet .a 5018 to 5577 1 to 560     Submitted on the opposite strand 560/560
(100 %)
0 diff
(100 %id)
BU857166 adenocarcinoma, cell line, breast .a 5088 to 5883 798 to 1     Submitted on the opposite strand 798/936
(85 %)
3 diff
(99.7 %id)
BU158214 epidermoid carcinoma, cell line, salivary gland .a 5135 to 5849 1 to 720       720/949
(75 %)
12 diff
(98.8 %id)
BQ673573 epidermoid carcinoma, cell line, salivary gland .a 5135 to 5891 1 to 760       760/993
(76 %)
12 diff
(98.8 %id)
DA475932   .a 5164 to 5761 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
CR598877 Neuroblastoma Cot 10-normalized .a 5240 to 6510 1 to 1271       1271/1271
(100 %)
0 diff
(100 %id)
DA089532 cerebellum .a 5322 to 5884 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CX869881 embryonic stem .a 5325 to 6061 1 to 737       737/737
(100 %)
0 diff
(100 %id)
CR625105 B cells (Ramos cell line) .a 5336 to 6575 1 to 1241       1241/1241
(100 %)
1 diff
(100.0 %id)
BM808852 amelanotic melanoma, cell line, skin .a 5358 to 6221 1 to 865       865/1033
(83 %)
12 diff
(98.9 %id)
BC150146 PCR rescued clones, C list .a 5402 to 6037 636 to 1     Submitted on the opposite strand 636/639
(99 %)
8 diff
(98.8 %id)
BX362864   .a 5409 to 6547 1130 to 1       1130/1138
(99 %)
19 diff
(98.4 %id)
BX428734 neuroblastoma .a 5450 to 6547 1092 to 1       1092/1122
(97 %)
21 diff
(98.2 %id)
BQ962927 epithelioid carcinoma cell line, Pancreas .a 5559 to 6430 1 to 876       876/887
(98 %)
8 diff
(99.1 %id)
BQ682093 melanotic melanoma, cell line, skin .a 5569 to 6420 1 to 858       858/898
(95 %)
11 diff
(98.8 %id)
TI_154127374   .a 5701 to 6570 939 to 80   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 860/1000
(86 %)
19 diff
(98.1 %id)
BQ678865 melanotic melanoma, cell line, skin .a 5738 to 6571 1 to 837   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 837/837
(100 %)
10 diff
(98.9 %id)
TI_149314680   .a 5759 to 6576 888 to 80   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 809/952
(84 %)
37 diff
(96.2 %id)
CA417079 Chondrosarcoma Cell line .a 5815 to 6570 773 to 19   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 755/755
(100 %)
2 diff
(99.8 %id)
BQ009867 Chondrosarcoma, Left Pubic Bone .a 5876 to 6576 715 to 16   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 700/700
(100 %)
1 diff
(99.9 %id)
BQ771815 Chondrosarcoma Grade II, Left Pelvis .a 5921 to 6576 673 to 19   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 655/655
(100 %)
1 diff
(99.9 %id)
BI766548 pooled lung and spleen .a 5950 to 6663 1 to 713   tiling clone,   713/713
(100 %)
1 diff
(99.9 %id)
DB228947 trachea .b 1 to 593 2 to 594   tiling clone, capped   593/593
(100 %)
1 diff
(99.9 %id)
AK094897 corpus callosum .b 25 to 3631 1 to 3607 D676G H851R tiling clone, available from FLJ,   3607/3614
(99 %)
3 diff
(100.0 %id)
DA276665 corpus callosum .b 26 to 603 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB307214 corpus callosum .b 3084 to 3631 557 to 8       550/557
(98 %)
1 diff
(99.9 %id)
AK056702 placenta .c 1 to 3440 1 to 3440 P444A tiling clone, available from FLJ,   3440/3440
(100 %)
2 diff
(100.0 %id)
DA834492 placenta .c 2 to 727 2 to 730   capped   729/729
(100 %)
7 diff
(99.1 %id)
DB328033 placenta .c 3085 to 3440 356 to 1       356/419
(84 %)
7 diff
(98.4 %id)
BC144399 Brain, cerebellum, PCR rescued clones .d 1 to 3485 1 to 3485 exact tiling clone,   3485/3485
(100 %)
0 diff
(100 %id)
AK056527   .e 1 to 3540 1 to 3540 E546G E682K tiling clone, available from FLJ,   3540/3540
(100 %)
2 diff
(100.0 %id)
DA743561   .e 2 to 504 2 to 504   capped   503/503
(100 %)
0 diff
(100 %id)
TI_2194694697   .e 2299 to 3456 1215 to 67   tiling clone,   1149/1286
(89 %)
18 diff
(98.7 %id)
TI_2194699495   .e 2367 to 3456 1153 to 68       1086/1284
(84 %)
9 diff
(99.3 %id)
BM824834 Ascites, stomach .e 2524 to 3084 1 to 561       561/561
(100 %)
4 diff
(99.3 %id)
DB324861   .e 3004 to 3540 537 to 1       537/537
(100 %)
0 diff
(100 %id)
AK057044   .f 1 to 3580 1 to 3580 L651P tiling clone, available from FLJ,   3580/3580
(100 %)
1 diff
(100.0 %id)
DB084594 testis .f 62 to 618 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB449483 testis .f 75 to 512 1 to 438       438/438
(100 %)
32 diff
(92.7 %id)
TI_2194694686   .g 1 to 1080 50 to 1128       1077/1236
(87 %)
14 diff
(98.9 %id)
TI_2194699119   .g 1 to 1255 45 to 1261       1117/1262
(88 %)
21 diff
(98.4 %id)
BC144400 Brain, cerebellum, PCR rescued clones .g 1 to 3537 1 to 3537   tiling clone,   3537/3537
(100 %)
0 diff
(100 %id)
DA774857 brain .g 46 to 609 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
BP315698 mammary gland .g 59 to 639 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA016653 adrenal gland .g 60 to 561 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
BP315844 mammary gland .g 73 to 653 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA901717   .g 75 to 558 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
DB331152   .g 3081 to 3622 542 to 1   tiling clone,   542/542
(100 %)
1 diff
(99.9 %id)
AK314305 cerebellum .h 1 to 3249 1 to 3249 F594L tiling clone,   3249/3249
(100 %)
1 diff
(100.0 %id)
BJ993676 hepatoblastoma .h 92 to 571 1 to 480       480/480
(100 %)
1 diff
(99.8 %id)
BJ993677 hepatoblastoma .h 2837 to 3435 600 to 1   tiling clone,   600/600
(100 %)
10 diff
(98.4 %id)
DA390662 thalamus .i 1 to 585 2 to 586   tiling clone, capped   585/585
(100 %)
0 diff
(100 %id)
DB459212 testis .i 16 to 502 1 to 487       487/487
(100 %)
2 diff
(99.6 %id)
BP326003 prostata .i 37 to 609 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DA914081   .i 40 to 587 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BM919828 pooled pancreas and spleen .i 41 to 844 1 to 811       811/1063
(76 %)
19 diff
(98.3 %id)
TI_57152454   .i 43 to 879 53 to 892       840/892
(94 %)
23 diff
(97.5 %id)
NM_006405.5   .i 48 to 2477 1 to 2430 exact RefSeq, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 2430/2430
(100 %)
0 diff
(100 %id)
BI765299 pooled colon, kidney, stomach .i 52 to 879 1 to 831       831/831
(100 %)
17 diff
(98.0 %id)
CB960948 Human Placenta, placenta .i 52 to 784 28 to 761       734/762
(96 %)
10 diff
(98.7 %id)
CD109375 Human Placenta, placenta .i 52 to 767 28 to 743       716/743
(96 %)
8 diff
(99.0 %id)
DA761764 tongue .i 53 to 587 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
TI_57179499   .i 54 to 822 88 to 857       770/858
(89 %)
12 diff
(98.7 %id)
BI769800 pooled lung and spleen .i 55 to 822 1 to 770       770/771
(99 %)
9 diff
(98.9 %id)
BI829089 brain, medulla .i 56 to 743 1 to 688       688/688
(100 %)
1 diff
(99.9 %id)
TI_57175820   .i 56 to 743 70 to 757       688/757
(90 %)
6 diff
(99.3 %id)
BI457830 brain, hypothalamus .i 61 to 829 1 to 774       774/774
(100 %)
12 diff
(98.5 %id)
CV809904 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .i 62 to 736 1 to 677       677/869
(77 %)
28 diff
(96.8 %id)
BQ437298 melanotic melanoma, skin .i 64 to 891 1 to 838       838/880
(95 %)
13 diff
(98.6 %id)
BX161390 neuroblastoma .i 68 to 2421 1 to 2354 exact     2354/2354
(100 %)
0 diff
(100 %id)
BX398908 Placenta Cot 25-normalized .i 68 to 1133 1 to 1059       1059/1099
(96 %)
28 diff
(97.5 %id)
DC353700 brain .i 87 to 695 1 to 609       609/609
(100 %)
2 diff
(99.7 %id)
DA204791 brain .i 88 to 655 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA488563 brain .i 88 to 651 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA705320   .i 88 to 562 2 to 477   capped   476/476
(100 %)
1 diff
(99.8 %id)
DA169708 amygdala .i 89 to 655 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
AA442622   .i 90 to 534 1 to 436       436/436
(100 %)
10 diff
(97.8 %id)
BX103990   .i 92 to 832 1 to 741       741/743
(99 %)
2 diff
(99.8 %id)
BM926944 brain .i 92 to 782 8 to 700       691/1091
(63 %)
12 diff
(99.0 %id)
AL037237 brain .i 94 to 667 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
DC299599   .i 98 to 666 1 to 569       569/569
(100 %)
5 diff
(99.2 %id)
BP423654 small intestine .i 99 to 659 1 to 561     Submitted on the opposite strand 561/561
(100 %)
1 diff
(99.9 %id)
DC428029   .i 102 to 692 1 to 591       591/591
(100 %)
0 diff
(100 %id)
BG913854 anaplastic oligodendroglioma with 1p/19qloss, brain .i 105 to 722 1 to 619       619/619
(100 %)
5 diff
(99.2 %id)
BX362270   .i 106 to 1181 1 to 1064       1064/1123
(94 %)
22 diff
(98.1 %id)
DC368410   .i 107 to 671 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DA596713   .i 109 to 644 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
CX758755 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .i 115 to 843 16 to 745     Submitted on the opposite strand 730/745
(97 %)
10 diff
(98.7 %id)
AU103483   .i 126 to 175 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP253539 Kidney .i 126 to 707 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC388551 small intestine .i 126 to 705 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DC392888 breast, tumor tissue .i 126 to 686 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC393273 breast, tumor tissue .i 126 to 703 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC300978 bladder .i 127 to 684 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
DC313081 amygdala .i 127 to 690 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DC351813 brain .i 127 to 694 1 to 569       569/572
(99 %)
2 diff
(99.7 %id)
DA604098   .i 127 to 635 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DC383462 Prostate .i 127 to 699 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DA919970 small intestine .i 128 to 632 2 to 506   capped   505/505
(100 %)
2 diff
(99.7 %id)
DC295129 synovial membrane tissue from rheumatioidarthritis .i 128 to 689 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC350830 brain .i 144 to 721 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC355392   .i 144 to 722 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DC360509   .i 144 to 705 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
DC371278   .i 144 to 701 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DC371819   .i 144 to 708 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DC383836 Prostate .i 146 to 727 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BU164600 epithelioid carcinoma, Pancreas .i 151 to 942 1 to 805       805/886
(90 %)
15 diff
(98.4 %id)
BG327948 Kidney, renal cell adenocarcinoma .i 154 to 774 1 to 621       621/621
(100 %)
8 diff
(98.8 %id)
DC359518   .i 173 to 676 1 to 504       504/504
(100 %)
2 diff
(99.7 %id)
DC299742   .i 182 to 758 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
CN407362 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i 182 to 605 1 to 424       424/424
(100 %)
0 diff
(100 %id)
BP265173 thyroid .i 182 to 765 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
CB164645 Liver .i 183 to 786 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
CB164732 Liver .i 183 to 766 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DA658936   .i 183 to 631 2 to 450   capped   449/449
(100 %)
0 diff
(100 %id)
CN407364 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i 205 to 889 1 to 686       686/686
(100 %)
1 diff
(99.9 %id)
BP343056 stomach mucosa .i 223 to 802 1 to 580       580/581
(99 %)
1 diff
(99.9 %id)
BI826650 brain, medulla .i 235 to 1121 1 to 885       885/885
(100 %)
7 diff
(99.3 %id)
TI_57174510   .i 235 to 1121 38 to 922       885/922
(95 %)
12 diff
(98.7 %id)
CB988769 Human Placenta, placenta .i 236 to 942 9 to 723       715/737
(97 %)
13 diff
(98.3 %id)
CB960778 Human Placenta, placenta .i 236 to 933 9 to 714       706/818
(86 %)
15 diff
(98.2 %id)
BP243067 Liver .i 241 to 820 1 to 580       580/580
(100 %)
9 diff
(98.5 %id)
DC339707 thalamus .i 245 to 869 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
DC385106   .i 245 to 729 1 to 490       490/490
(100 %)
9 diff
(98.2 %id)
DC337305 substantia nigra .i 246 to 819 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
AU103484   .i 247 to 296 1 to 50       50/50
(100 %)
0 diff
(100 %id)
BP257067 Kidney .i 247 to 827 1 to 581       581/581
(100 %)
0 diff
(100 %id)
TI_45209734   .i 247 to 957 119 to 827       709/827
(85 %)
11 diff
(98.7 %id)
DC388541 small intestine .i 247 to 828 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BI601991 brain, hypothalamus .i 249 to 957 1 to 707       707/707
(100 %)
12 diff
(98.4 %id)
DB448153 testis .i 250 to 477 1 to 228       228/231
(98 %)
3 diff
(98.8 %id)
DB496515 hypothalamus .i 254 to 752 1 to 499       499/499
(100 %)
6 diff
(98.8 %id)
CN407359 embryonic stem cells, DMSO-treated H9 cellline .i 255 to 986 1 to 730       730/730
(100 %)
5 diff
(99.4 %id)
CF122418 CNCAP(3)T-225 cell line, Prostate .i 258 to 1024 1 to 766       766/766
(100 %)
11 diff
(98.6 %id)
DC298230 adrenal gland .i 261 to 812 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
DC328137 corpus callosum .i 261 to 815 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
DC346016 tongue, tumor tissue .i 261 to 848 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
DC346099 tongue, tumor tissue .i 261 to 827 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
BI770689 pooled lung and spleen .i 261 to 1009 1 to 750       750/750
(100 %)
4 diff
(99.5 %id)
CA487757   .i 261 to 1125 1 to 876       876/894
(97 %)
12 diff
(98.7 %id)
TI_57184053   .i 261 to 1009 32 to 781       750/781
(96 %)
9 diff
(98.9 %id)
DC406575 thymus .i 261 to 811 1 to 551       551/551
(100 %)
0 diff
(100 %id)
DC328666 corpus callosum .i 263 to 836 1 to 574       574/574
(100 %)
4 diff
(99.4 %id)
TI_154181998   .i 265 to 1092 64 to 889       826/826
(100 %)
11 diff
(98.7 %id)
DC313703 amygdala .i 266 to 810 1 to 546       546/546
(100 %)
2 diff
(99.7 %id)
DC378554   .i 266 to 825 1 to 560       560/560
(100 %)
0 diff
(100 %id)
BX395173 Neuroblastoma Cot 50-normalized .i 267 to 1087 1 to 821       821/821
(100 %)
0 diff
(100 %id)
TI_57197480   .i 267 to 879 35 to 646       612/646
(94 %)
7 diff
(99.0 %id)
BI820652 pooled brain, lung, testis .i 268 to 879 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
CB128737 Liver .i 269 to 785 1 to 517       517/517
(100 %)
1 diff
(99.9 %id)
DC299329   .i 271 to 834 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DC340776 thalamus .i 272 to 848 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
BP213450 cerebrum .i 272 to 842 1 to 571       571/571
(100 %)
3 diff
(99.5 %id)
DC357976   .i 272 to 810 1 to 539       539/539
(100 %)
0 diff
(100 %id)
BX448281 fetal liver, Liver .i 276 to 1257 1 to 975       975/984
(99 %)
18 diff
(98.2 %id)
CR606704 Placenta Cot 25-normalized .i 277 to 2443 1 to 2167 exact     2167/2167
(100 %)
0 diff
(100 %id)
BX381586 Placenta Cot 25-normalized .i 277 to 1245 1 to 968       968/968
(100 %)
3 diff
(99.7 %id)
BX346657 Placenta Cot 25-normalized .i 278 to 1255 23 to 998       976/998
(97 %)
10 diff
(99.0 %id)
BX396160 Placenta Cot 25-normalized .i 278 to 1261 23 to 1001       979/1004
(97 %)
16 diff
(98.5 %id)
BX363127   .i 278 to 1016 23 to 786       738/1073
(68 %)
59 diff
(94.6 %id)
BX388485   .i 278 to 1197 23 to 942       920/942
(97 %)
6 diff
(99.4 %id)
DC346086 tongue, tumor tissue .i 278 to 865 1 to 588       588/588
(100 %)
7 diff
(98.9 %id)
BM755434 stomach .i 282 to 692 1 to 411       411/411
(100 %)
3 diff
(99.3 %id)
DC300947 bladder .i 283 to 819 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
DC331434 hippocampus .i 283 to 871 1 to 589       589/589
(100 %)
0 diff
(100 %id)
DC348876   .i 283 to 810 1 to 530       530/530
(100 %)
2 diff
(99.7 %id)
BJ993609 hepatoblastoma .i 283 to 882 1 to 600       600/600
(100 %)
0 diff
(100 %id)
DC388487 small intestine .i 283 to 851 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BP335584 coronary artery .i 283 to 865 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DC394097 esophageal, tumor tissue .i 283 to 831 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC414107 trachea .i 283 to 858 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
AU140435 placenta .i 290 to 1082 2 to 794   capped   793/793
(100 %)
6 diff
(99.3 %id)
DC338170 subthalamic nucleus .i 291 to 847 1 to 557       557/557
(100 %)
2 diff
(99.7 %id)
BX393958 Neuroblastoma Cot 25-normalized .i 295 to 1307 1 to 1006       1006/1050
(95 %)
15 diff
(98.6 %id)
BX377558 Placenta Cot 25-normalized .i 295 to 1321 1 to 1026       1026/1026
(100 %)
1 diff
(100.0 %id)
BX339718 Placenta Cot 25-normalized .i 295 to 1339 1 to 1035       1035/1049
(98 %)
12 diff
(98.9 %id)
BX446577 neuroblastoma .i 298 to 1314 1 to 1012       1012/1047
(96 %)
15 diff
(98.6 %id)
DC361698 Kidney .i 298 to 848 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC383572 Prostate .i 298 to 873 1 to 576       576/576
(100 %)
0 diff
(100 %id)
AK292110 synovial membrane tissue from rheumatoidarthritis .i 299 to 2477 1 to 2179 E94K K461E     2179/2179
(100 %)
2 diff
(100.0 %id)
DC314947 amygdala .i 299 to 863 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
DC347938 tongue, tumor tissue .i 299 to 858 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DC295435 synovial membrane tissue from rheumatioidarthritis .i 299 to 844 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
BM048425 carcinoma, cell line, Prostate .i 301 to 991 1 to 692       692/692
(100 %)
6 diff
(99.2 %id)
BM827837 stomach .i 303 to 967 1 to 665       665/665
(100 %)
2 diff
(99.7 %id)
BU195363 melanotic melanoma, skin .i 304 to 1147 12 to 866       855/873
(97 %)
39 diff
(95.6 %id)
DC419495 uterus, tumor tissue .i 308 to 866 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
BQ439592 embryonal carcinoma, cell line, testis .i 325 to 968 1 to 651       651/999
(65 %)
21 diff
(97.9 %id)
CR604869 neuroblastoma .i 334 to 2469 1 to 2136 exact     2136/2136
(100 %)
0 diff
(100 %id)
BX416070 neuroblastoma .i 334 to 1356 1 to 1020       1020/1024
(99 %)
44 diff
(95.8 %id)
AU098818   .i 337 to 638 1 to 300       300/300
(100 %)
4 diff
(98.7 %id)
CN407363 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 351 to 905 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DN994692 brain, whole brain .i 353 to 972 1 to 620       620/620
(100 %)
5 diff
(99.2 %id)
BP237944 Liver .i 365 to 948 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BC010856 Pancreas, epithelioid carcinoma .i 379 to 2477 1 to 2099 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 2099/2099
(100 %)
0 diff
(100 %id)
U94831 melanoma .i 381 to 2477 1 to 2095 P455N V464D C514S AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 2095/2095
(100 %)
10 diff
(99.6 %id)
AW673452 cervix .i 664 to 1214 1 to 551       551/551
(100 %)
8 diff
(98.6 %id)
AA436865   .i 1060 to 1300 254 to 14   AAA   241/241
(100 %)
0 diff
(100 %id)
BX448280 fetal liver, Liver .i 1471 to 2457 974 to 1       978/1038
(94 %)
22 diff
(97.9 %id)
TI_154034225   .i 1573 to 2484 992 to 94   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 899/946
(95 %)
19 diff
(98.0 %id)
N26442 melanocyte .i 1629 to 2061 1 to 436       436/437
(99 %)
7 diff
(98.4 %id)
BF984481 duodenal adenocarcinoma, cell line, small intestine .i 1641 to 2332 13 to 706       694/921
(75 %)
11 diff
(98.9 %id)
TI_151752155   .i 1649 to 2442 785 to 1       784/802
(97 %)
21 diff
(97.4 %id)
BP431963   .i 1657 to 2006 1 to 351       351/351
(100 %)
5 diff
(98.6 %id)
CN407358 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 1695 to 2449 12 to 766       755/766
(98 %)
6 diff
(99.3 %id)
BE003856 breast_normal .i 1698 to 2011 318 to 6     Submitted on the opposite strand 313/318
(98 %)
0 diff
(100 %id)
BM727764 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 1716 to 2158 1 to 443   fully sequenced, Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 443/443
(100 %)
0 diff
(100 %id)
AI609706 brain, glioblastoma (pooled) .i 1734 to 2477 745 to 1       745/745
(100 %)
7 diff
(99.1 %id)
AI554814 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .i 1734 to 2477 747 to 6       742/747
(99 %)
8 diff
(99.0 %id)
BF946032 nervous_normal .i 1755 to 2175 434 to 14       421/434
(97 %)
0 diff
(100 %id)
BX339717 Placenta Cot 25-normalized .i 1763 to 2441 679 to 1       746/804
(92 %)
21 diff
(97.4 %id)
AW675774 cervix .i 1938 to 2481 544 to 1       544/544
(100 %)
0 diff
(100 %id)
BM681409 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 2128 to 2483 368 to 13   fully sequenced, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 356/356
(100 %)
4 diff
(98.9 %id)
AK074743   .j 1 to 1864 1 to 1864 exact tiling clone, available from FLJ,   1864/1864
(100 %)
0 diff
(100 %id)
DA730796   .j 1 to 624 2 to 625   capped   624/624
(100 %)
2 diff
(99.7 %id)
DB362768   .j 1325 to 1864 537 to 1       537/553
(97 %)
14 diff
(97.5 %id)
CF124703 CNCAP(3)T-225 cell line, Prostate .j 1466 to 1862 37 to 434       398/434
(91 %)
6 diff
(98.7 %id)
AK304642 uterus .k 1 to 1937 2 to 1938 I88M tiling clone,   1938/1938
(100 %)
1 diff
(100.0 %id)
DC421527 uterus .k 1 to 562 2 to 564       564/564
(100 %)
1 diff
(99.9 %id)
H72494 liver and spleen .k 121 to 535 1 to 413       413/413
(100 %)
15 diff
(96.4 %id)
NM_001014842.1   .l 1 to 2124 1 to 2124 exact RefSeq,   2124/2124
(100 %)
4 diff
(99.9 %id)
BJ995111 hepatoblastoma .l 40 to 639 1 to 600   tiling clone,   600/600
(100 %)
0 diff
(100 %id)
BX161494 T cells (Jurkat cell line) .l 59 to 2060 1 to 2002 exact     2002/2002
(100 %)
0 diff
(100 %id)
CR621520 Placenta Cot 25-normalized .l 211 to 2113 1 to 1903 exact tiling clone,   1903/1903
(100 %)
0 diff
(100 %id)
BX347271 Placenta Cot 25-normalized .l 965 to 1858 1 to 891       891/895
(99 %)
22 diff
(97.6 %id)
BX346656 Placenta Cot 25-normalized .l 1061 to 2087 1025 to 1       1025/1025
(100 %)
13 diff
(98.8 %id)
BX362269   .l 1087 to 2056 968 to 1       968/1014
(95 %)
16 diff
(98.5 %id)
AW001226 colon, colonic mucosa from 3 patients with Crohn'sdisease .l 1201 to 1922 722 to 1       722/722
(100 %)
23 diff
(96.9 %id)
BX373120 Placenta Cot 25-normalized .l 1315 to 2113 802 to 1       802/925
(86 %)
34 diff
(96.4 %id)
BX352487   .l 1317 to 2113 801 to 1       801/913
(87 %)
20 diff
(97.9 %id)
AA975074 Kidney .l 1498 to 1924 427 to 2       426/427
(99 %)
0 diff
(100 %id)
BX388484   .l 1501 to 2061 559 to 1       559/594
(94 %)
7 diff
(98.9 %id)
AI424232 Prostate .l 1529 to 1922 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
BJ995112 hepatoblastoma .l 1531 to 1893 363 to 1       363/363
(100 %)
0 diff
(100 %id)
BE301258 Kidney, renal cell adenocarcinoma .l 1561 to 2120 558 to 1       558/564
(98 %)
70 diff
(87.6 %id)
AA732924 heart .l 1566 to 1923 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
BE301248 Kidney, renal cell adenocarcinoma .l 1645 to 2120 474 to 1       474/474
(100 %)
26 diff
(94.6 %id)
AI086470 anaplastic oligodendroglioma, brain .l 1656 to 2116 459 to 1       459/459
(100 %)
3 diff
(99.4 %id)
DB524698 testis .l 1683 to 2116 1 to 432   tiling clone, Submitted on the opposite strand 432/432
(100 %)
2 diff
(99.6 %id)
AW015727   .l 1823 to 2116 310 to 18   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 293/293
(100 %)
6 diff
(98.0 %id)
AA834491 Kidney, kidney tumor .l 1832 to 2078 247 to 1       247/247
(100 %)
0 diff
(100 %id)
CR618221 Neuroblastoma Cot 25-normalized .m 1 to 2107 1 to 2107 exact tiling clone,   2107/2107
(100 %)
0 diff
(100 %id)
BX347049 Neuroblastoma Cot 25-normalized .m 643 to 1476 829 to 1       829/852
(97 %)
14 diff
(98.4 %id)
BX393957 Neuroblastoma Cot 25-normalized .m 1195 to 2127 924 to 1   tiling clone,   924/1016
(90 %)
17 diff
(98.4 %id)
DC301118 bladder .n 1 to 569 4 to 572   tiling clone,   572/572
(100 %)
0 diff
(100 %id)
BI916120 brain .n 11 to 879 1 to 872   tiling clone,   872/872
(100 %)
8 diff
(99.1 %id)
TI_57239019   .n 11 to 879 32 to 903       872/903
(96 %)
13 diff
(98.6 %id)
CR614007 Neuroblastoma Cot 10-normalized .n 654 to 1742 1 to 1089   tiling clone,   1089/1089
(100 %)
0 diff
(100 %id)
BX331391 Neuroblastoma Cot 10-normalized .n 687 to 1736 1050 to 7       1044/1058
(98 %)
9 diff
(99.2 %id)
BG398091 B-cells, primary B-cells from tonsils (cell line) .n 779 to 1635 1 to 849       849/849
(100 %)
19 diff
(97.8 %id)
BF316720 brain, neuroblastoma .n 873 to 1492 1 to 615       615/882
(69 %)
12 diff
(98.7 %id)
BM353671 Pancreas, Purified pancreatic islet .n 1014 to 1647 634 to 1       634/634
(100 %)
1 diff
(99.9 %id)
CN407365 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .n 1131 to 1356 9 to 235       227/235
(96 %)
6 diff
(97.5 %id)
BU527086 epidermoid carcinoma, cell line, lung .n 1163 to 1648 1 to 486   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 486/486
(100 %)
0 diff
(100 %id)
AI086839 senescent fibroblast .n 1222 to 1660 439 to 1       439/439
(100 %)
0 diff
(100 %id)
AI073610 senescent fibroblast .n 1327 to 1676 355 to 5       351/355
(98 %)
0 diff
(100 %id)
DC354958   .o 1 to 560 1 to 560   tiling clone,   560/560
(100 %)
1 diff
(99.9 %id)
TI_159707740   .o 201 to 1147 1034 to 93   AAA   942/1084
(86 %)
15 diff
(98.7 %id)
BQ682946 melanotic melanoma, cell line, skin .o 300 to 1109 1 to 812       812/936
(86 %)
27 diff
(97.2 %id)
AA447921   .o 514 to 1015 1 to 502   tiling clone,   502/502
(100 %)
0 diff
(100 %id)
BP223634 colon mucosa .o 770 to 1452 1 to 689       689/693
(99 %)
10 diff
(98.6 %id)
BY795644 eye .o 871 to 1467 8 to 604   tiling clone,   597/604
(98 %)
6 diff
(99.1 %id)
BU180488 epidermoid carcinoma, cell line, salivary gland .o 1229 to 2100 14 to 898   tiling clone,   885/942
(93 %)
6 diff
(99.4 %id)
BP307066   .o 1256 to 1805 1 to 550       550/550
(100 %)
4 diff
(99.3 %id)
BG116091 duodenal adenocarcinoma, cell line, small intestine .o 1332 to 1935 1 to 606       606/1076
(56 %)
7 diff
(99.4 %id)
R09272 liver and spleen .o 1347 to 1722 1 to 395       395/395
(100 %)
20 diff
(95.0 %id)
H53943 liver and spleen .o 1347 to 1737 1 to 400   fully sequenced,   400/400
(100 %)
4 diff
(99.0 %id)
BY994404   .o 1350 to 2003 28 to 682       655/682
(96 %)
6 diff
(99.2 %id)
BG951732 colon .o 1356 to 1487 1 to 129       129/129
(100 %)
5 diff
(96.2 %id)
H53944 liver and spleen .o 1707 to 2006 301 to 1   tiling clone, fully sequenced,   301/301
(100 %)
4 diff
(98.7 %id)
R09169 liver and spleen .o 1722 to 1983 264 to 1       264/267
(98 %)
3 diff
(98.9 %id)
AI601220 colon .o 1956 to 2207 263 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 252/252
(100 %)
2 diff
(99.3 %id)
BF511137   .o 2067 to 2601 579 to 45   tiling clone,   535/579
(92 %)
0 diff
(100 %id)
BF791422 adrenal cortex carcinoma, cell line, adrenal gland .o 2099 to 2818 1 to 727   tiling clone,   727/1093
(66 %)
26 diff
(97.7 %id)
BF508043   .o 2288 to 2601 358 to 45       314/358
(87 %)
0 diff
(100 %id)
AW408161 lymph .o 2307 to 2805 8 to 506       499/506
(98 %)
6 diff
(98.9 %id)
TI_154147557   .o 2307 to 2875 81 to 649       569/811
(70 %)
8 diff
(99.1 %id)
AA658846   .o 2400 to 2833 1 to 436   tiling clone,   436/436
(100 %)
15 diff
(96.6 %id)
DA542818   .o 2403 to 2882 2 to 481   tiling clone, capped   480/480
(100 %)
3 diff
(99.4 %id)
AA657533   .o 2404 to 2809 1 to 406   tiling clone,   406/406
(100 %)
5 diff
(98.8 %id)
AV744428 cord Blood .o 2419 to 2723 37 to 352       316/378
(83 %)
20 diff
(94.8 %id)
DA447772 tongue, tumor tissue .o 2435 to 2876 2 to 443   capped, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 442/442
(100 %)
3 diff
(99.4 %id)
AA448858   .o 2481 to 2876 395 to 1       395/395
(100 %)
4 diff
(99.0 %id)
BQ276472 carcinoma, cell line, Prostate .p -8 to 937 1 to 957 N2H D90Y Q149H G184W S234I ... tiling clone,   959/1046
(91 %)
35 diff
(96.7 %id)
BG427372 Kidney .q 1 to 726 1 to 736   tiling clone,   736/736
(100 %)
24 diff
(96.8 %id)
BX450245 placenta .q 583 to 1428 1 to 846   tiling clone,   846/846
(100 %)
2 diff
(99.8 %id)
Z45392 brain, total brain .r 1 to 284 1 to 284   tiling clone,   284/284
(100 %)
0 diff
(100 %id)
Z41108 brain, total brain .r 1905 to 2138 234 to 1   tiling clone,   234/234
(100 %)
0 diff
(100 %id)
BX161512 B cells (Ramos cell line) .s 1 to 2108 1 to 2108 exact tiling clone,   2108/2108
(100 %)
0 diff
(100 %id)
CN368533 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .s 51 to 587 1 to 536       534/536
(99 %)
4 diff
(99.3 %id)
AW779901 Kidney .s 56 to 657 607 to 6       602/607
(99 %)
0 diff
(100 %id)
BP395830 pancreatic islet .s 105 to 642 539 to 1       539/539
(100 %)
1 diff
(99.9 %id)
AA768332 germinal center B cell .s 648 to 1139 9 to 499     Submitted on the opposite strand 491/499
(98 %)
6 diff
(98.8 %id)
AA635185   .s 649 to 840 1 to 192     Submitted on the opposite strand 192/192
(100 %)
2 diff
(99.0 %id)
DB297083 cerebellum .s 652 to 1194 1 to 544     Submitted on the opposite strand 544/545
(99 %)
2 diff
(99.7 %id)
BM040968 Kidney, Wilms' tumor, cell line .s 668 to 1042 1 to 376       376/565
(66 %)
4 diff
(99.3 %id)
NM_014169.2   .s 669 to 2173 1 to 1505 exact RefSeq,   1505/1505
(100 %)
0 diff
(100 %id)
BX326387   .s 778 to 1681 1 to 914       914/920
(99 %)
19 diff
(98.0 %id)
BX349177   .s 779 to 1681 1 to 904       904/987
(91 %)
22 diff
(97.8 %id)
BC113533 Brain, cerebral cortex, PCR rescued clones .s 818 to 2079 1 to 1262 exact     1262/1262
(100 %)
1 diff
(100.0 %id)
BC113535 Brain, cerebral cortex, PCR rescued clones .s 818 to 2079 1 to 1262 exact     1262/1262
(100 %)
1 diff
(100.0 %id)
TI_1243020835   .s 818 to 1816 134 to 1129     Submitted on the opposite strand 996/1303
(76 %)
22 diff
(98.4 %id)
TI_1243021305   .s 818 to 1683 136 to 1002     Submitted on the opposite strand 867/1015
(85 %)
10 diff
(99.1 %id)
TI_1243023427   .s 818 to 1075 64 to 321     Submitted on the opposite strand 258/321
(80 %)
6 diff
(98.2 %id)
TI_1243021297   .s 818 to 1806 131 to 1114     Submitted on the opposite strand 984/1257
(78 %)
14 diff
(98.9 %id)
TI_1243022355   .s 818 to 1770 964 to 7       958/1098
(87 %)
11 diff
(99.0 %id)
TI_1243023429   .s 818 to 1355 65 to 605     Submitted on the opposite strand 541/605
(89 %)
8 diff
(98.7 %id)
TI_1243023043   .s 869 to 2079 1266 to 59 S2R R3G R4G R5A P6*   Submitted on the opposite strand 1208/1279
(94 %)
37 diff
(97.2 %id)
TI_1243023045   .s 957 to 2087 1198 to 54 G9E K12Q A13R G14L P15V ...   Submitted on the opposite strand 1145/1313
(87 %)
31 diff
(97.7 %id)
BX342427   .s 1088 to 2108 1020 to 1       1020/1114
(91 %)
10 diff
(99.2 %id)
DA643490   .s 1142 to 1686 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
AV737201 cord Blood .s 1152 to 1689 40 to 574       535/582
(91 %)
28 diff
(95.2 %id)
BI545905 brain, hippocampus .s 1155 to 1985 1 to 824       824/824
(100 %)
17 diff
(98.0 %id)
BC107699 Pooled, 40 cell lines .s 1156 to 1894 1 to 739   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 739/743
(99 %)
3 diff
(99.6 %id)
DB262182 uterus .s 1156 to 1728 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
CD688238 normal nasopharynx .s 1157 to 1603 40 to 488       449/488
(92 %)
6 diff
(98.8 %id)
BU598380 mixed (pool of 40 RNAs) .s 1157 to 1783 1 to 629       629/865
(72 %)
8 diff
(99.1 %id)
BU595418 mixed (pool of 40 RNAs) .s 1160 to 1921 1 to 763       763/768
(99 %)
8 diff
(99.0 %id)
TI_44166063   .s 1160 to 1985 124 to 942       819/942
(86 %)
20 diff
(97.9 %id)
DB142071 thymus .s 1161 to 1681 2 to 523   capped   522/522
(100 %)
2 diff
(99.7 %id)
AF161483 blood .s 1163 to 2137 1 to 977   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 977/977
(100 %)
6 diff
(99.4 %id)
BF795492 lymph, lymphoma, cell line .s 1166 to 2007 1 to 832       832/1036
(80 %)
24 diff
(97.7 %id)
BF795414 lymph, lymphoma, cell line .s 1166 to 1818 1 to 664       664/1125
(59 %)
15 diff
(98.7 %id)
DB486073 hypothalamus .s 1167 to 1592 1 to 425       425/425
(100 %)
3 diff
(99.3 %id)
BE792992 lung, small cell carcinoma .s 1167 to 1977 1 to 812       812/813
(99 %)
24 diff
(97.1 %id)
CD690642 normal nasopharynx .s 1168 to 1728 22 to 582       561/582
(96 %)
6 diff
(99.0 %id)
CF455540 peripheral nervous system .s 1168 to 1946 30 to 803       774/804
(96 %)
15 diff
(98.2 %id)
CN306879 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .s 1169 to 1818 1 to 649       649/649
(100 %)
3 diff
(99.6 %id)
CB128181 Liver .s 1170 to 1618 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
BP305341   .s 1170 to 1688 1 to 521       521/581
(89 %)
5 diff
(99.2 %id)
BM825413 Ascites, stomach .s 1170 to 1661 1 to 492       492/492
(100 %)
0 diff
(100 %id)
CN306875 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .s 1171 to 1861 10 to 701       692/701
(98 %)
10 diff
(98.6 %id)
CD671413 eye, Iris .s 1171 to 1615 1 to 445       445/445
(100 %)
0 diff
(100 %id)
BF795912 lymph, lymphoma, cell line .s 1171 to 1972 1 to 797       797/1095
(72 %)
18 diff
(98.4 %id)
TI_154194146   .s 1171 to 2022 50 to 898       849/998
(85 %)
14 diff
(98.6 %id)
CF128292 Chondrosarcoma Lung Metastasis cell lines, lung .s 1172 to 1922 1 to 751       751/752
(99 %)
7 diff
(99.1 %id)
BX280109 lymph, lymphoma, cell line .s 1174 to 1653 3 to 482       480/482
(99 %)
3 diff
(99.4 %id)
BF131581 hypernephroma, Kidney .s 1174 to 1813 1 to 634       634/693
(91 %)
18 diff
(97.5 %id)
BG256103 adenocarcinoma, cell line, Prostate .s 1174 to 1826 1 to 654       654/1072
(61 %)
12 diff
(98.9 %id)
BG822491 adenocarcinoma cell line, colon .s 1174 to 2007 1 to 837       837/854
(98 %)
24 diff
(97.2 %id)
DA830748 placenta .s 1176 to 1633 2 to 459   capped   458/458
(100 %)
1 diff
(99.8 %id)
BM548041 brain, hippocampus .s 1177 to 2130 20 to 980       966/1099
(87 %)
43 diff
(96.1 %id)
CA942361 Pancreas, Purified pancreatic islet .s 1177 to 1606 1 to 430   fully sequenced,   430/430
(100 %)
0 diff
(100 %id)
BU658800 blood .s 1178 to 1798 1 to 621       621/621
(100 %)
4 diff
(99.4 %id)
BG681309 skin, squamous cell carcinoma .s 1178 to 2022 1 to 846       846/849
(99 %)
7 diff
(99.2 %id)
CD685143 normal nasopharynx .s 1180 to 1723 32 to 576       545/576
(94 %)
9 diff
(98.5 %id)
CD699682 normal nasopharynx .s 1180 to 1804 19 to 643       625/643
(97 %)
8 diff
(98.8 %id)
CD709377 normal nasopharynx .s 1180 to 1642 23 to 486       464/486
(95 %)
7 diff
(98.6 %id)
CD688473 normal nasopharynx .s 1181 to 1733 15 to 565       551/565
(97 %)
8 diff
(98.6 %id)
BC010893 Prostate .s 1181 to 2135 1 to 955   available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 955/957
(99 %)
3 diff
(99.7 %id)
BQ881918 brain, neuroblastoma, cell line .s 1181 to 2067 12 to 906       895/906
(98 %)
24 diff
(97.4 %id)
BM458809 lymph, lymphoma, cell line .s 1182 to 2105 1 to 939   AAA   939/971
(96 %)
15 diff
(98.5 %id)
AB100262   .s 1183 to 1930 1 to 748       748/748
(100 %)
0 diff
(100 %id)
BE735729 adenocarcinoma, Pancreas .s 1183 to 1888 1 to 706       706/706
(100 %)
4 diff
(99.5 %id)
BG747497 adenocarcinoma cell line, colon .s 1183 to 2049 1 to 869       869/870
(99 %)
26 diff
(97.1 %id)
BI837590 pooled pancreas and spleen .s 1183 to 2026 1 to 852       852/853
(99 %)
24 diff
(97.2 %id)
TI_57165671   .s 1183 to 2026 39 to 890       852/891
(95 %)
30 diff
(96.7 %id)
CR976037 T-Lymphocytes .s 1184 to 2124 1 to 936       936/938
(99 %)
11 diff
(98.9 %id)
BI161092 epithelioid carcinoma cell line, Pancreas .s 1187 to 2012 1 to 829       829/829
(100 %)
20 diff
(97.6 %id)
AF212243 pheochromocytoma .s 1188 to 2137 1 to 950   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 950/950
(100 %)
2 diff
(99.8 %id)
BG249047 hypernephroma, cell line, Kidney .s 1188 to 2002 1 to 785       790/936
(84 %)
38 diff
(96.0 %id)
BG403473 bladder, transitional cell papilloma, cell line .s 1188 to 1906 1 to 722       722/1096
(65 %)
14 diff
(98.8 %id)
BG535874 lung .s 1188 to 1874 1 to 699       697/699
(99 %)
42 diff
(94.0 %id)
TI_1243019323   .s 1189 to 2079 947 to 60     Submitted on the opposite strand 888/1210
(73 %)
3 diff
(99.8 %id)
BF675230 Prostate .s 1190 to 1894 1 to 696       699/871
(80 %)
23 diff
(97.4 %id)
BQ055484 lymph, lymphoma, cell line .s 1190 to 1985 1 to 809       809/1078
(75 %)
17 diff
(98.5 %id)
BE790683 lung, small cell carcinoma .s 1191 to 1940 1 to 744       744/1000
(74 %)
19 diff
(98.1 %id)
BQ949724 sciatic nerve .s 1191 to 2049 1 to 858       858/934
(91 %)
15 diff
(98.4 %id)
BG332729 large cell carcinoma, lung .s 1192 to 1923 1 to 734       734/921
(79 %)
32 diff
(96.6 %id)
BU540684 large cell carcinoma, lung .s 1194 to 2097 1 to 908       908/912
(99 %)
17 diff
(98.2 %id)
CN306874 embryonic stem cells, cell lines H1, H7, andH9 .s 1197 to 1911 12 to 726       715/730
(97 %)
7 diff
(99.1 %id)
BG326790 Kidney, renal cell adenocarcinoma .s 1197 to 1962 1 to 759       759/912
(83 %)
20 diff
(97.9 %id)
TI_1243022363   .s 1198 to 2032 13 to 849       837/849
(98 %)
10 diff
(98.9 %id)
BU185044 large cell carcinoma, lung .s 1207 to 2053 1 to 861       861/907
(94 %)
16 diff
(98.3 %id)
AY329084 squamous cell carcinoma .s 1209 to 1877 1 to 669       669/669
(100 %)
1 diff
(99.9 %id)
BE788986 large cell carcinoma, lung .s 1210 to 1924 1 to 707       709/887
(79 %)
21 diff
(97.7 %id)
BG489673 large cell carcinoma, lung .s 1212 to 1869 1 to 665       665/869
(76 %)
11 diff
(98.8 %id)
BE797110 lung, small cell carcinoma .s 1216 to 1983 1 to 768       768/1022
(75 %)
7 diff
(99.4 %id)
BE796760 lung, small cell carcinoma .s 1216 to 1998 1 to 783       783/784
(99 %)
9 diff
(98.9 %id)
CR624796 Placenta Cot 25-normalized .s 1217 to 1900 1 to 684       684/684
(100 %)
0 diff
(100 %id)
BX381208 Placenta Cot 25-normalized .s 1217 to 1900 1 to 685       685/685
(100 %)
2 diff
(99.8 %id)
BM083440 endometrium, adenocarcinoma cell line, uterus .s 1238 to 1880 25 to 666       642/666
(96 %)
8 diff
(98.8 %id)
BQ671305 epidermoid carcinoma, cell line, salivary gland .s 1238 to 2137 953 to 50   AAA Submitted on the opposite strand 904/941
(96 %)
35 diff
(96.3 %id)
BE378247 endometrium, adenocarcinoma cell line, uterus .s 1240 to 1925 1 to 684       684/684
(100 %)
4 diff
(99.5 %id)
BE207635 adenocarcinoma cell line, ovary .s 1251 to 1640 1 to 391   fully sequenced,   391/391
(100 %)
3 diff
(99.3 %id)
TI_151772219   .s 1266 to 2136 80 to 947       868/1148
(75 %)
40 diff
(96.6 %id)
BM842036 lymph node, stomach .s 1277 to 1910 1 to 634       634/634
(100 %)
0 diff
(100 %id)
BI114869 muscle, rhabdomyosarcoma .s 1278 to 1962 1 to 708       708/925
(76 %)
20 diff
(97.9 %id)
BE781853 eye, retinoblastoma .s 1283 to 1892 1 to 610   AAA   610/616
(99 %)
2 diff
(99.7 %id)
CR983024 T-Lymphocytes .s 1287 to 1890 1 to 604       604/604
(100 %)
0 diff
(100 %id)
BG757461 B-cells, primary B-cells from tonsils (cell line) .s 1304 to 2173 1 to 878       878/896
(97 %)
17 diff
(98.2 %id)
CF130330 Chondrosarcoma Lung Metastasis cell lines, lung .s 1313 to 2116 1 to 799       799/799
(100 %)
7 diff
(99.2 %id)
TI_154192289   .s 1313 to 2139 51 to 869       819/1013
(80 %)
11 diff
(99.0 %id)
BF878458 lung_tumor .s 1343 to 1959 613 to 4     Submitted on the opposite strand 610/632
(96 %)
7 diff
(98.9 %id)
BQ669014 epidermoid carcinoma, cell line, salivary gland .s 1352 to 2137 1 to 787       787/932
(84 %)
1 diff
(99.9 %id)
CF130126 Chondrosarcoma Lung Metastasis cell lines, lung .s 1353 to 2037 1 to 684       684/684
(100 %)
1 diff
(99.9 %id)
TI_154192149   .s 1353 to 2138 51 to 828       778/977
(79 %)
9 diff
(99.1 %id)
T59964 ovary .s 1360 to 1708 1 to 352       352/393
(89 %)
7 diff
(98.3 %id)
AI718321 colon .s 1374 to 2130 764 to 8       757/764
(99 %)
13 diff
(98.3 %id)
TI_2194630315   .s 1388 to 2084 744 to 52     Submitted on the opposite strand 689/1045
(65 %)
8 diff
(99.3 %id)
TI_149314573   .s 1391 to 2137 831 to 85   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 747/977
(76 %)
13 diff
(98.7 %id)
CD675587 eye, lens .s 1401 to 1908 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
AA770645 carcinoid, lung .s 1425 to 1872 448 to 1       448/448
(100 %)
6 diff
(98.7 %id)
BM824039 Ascites, stomach .s 1449 to 2008 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
AW270706 endometrioid ovarian metastasis, ovary .s 1455 to 1872 418 to 1       418/418
(100 %)
7 diff
(98.4 %id)
BQ306141 breast .s 1460 to 2026 10 to 564       555/568
(97 %)
29 diff
(94.9 %id)
BQ305910 breast .s 1461 to 2011 39 to 584       546/595
(91 %)
13 diff
(97.9 %id)
BQ305909 breast .s 1464 to 2054 1 to 586       586/597
(98 %)
24 diff
(96.0 %id)
BQ306140 breast .s 1465 to 2034 1 to 566       566/601
(94 %)
8 diff
(98.7 %id)
BQ305786 breast .s 1467 to 2052 1 to 581       581/588
(98 %)
13 diff
(97.8 %id)
BU070496 insulinoma, Pancreas .s 1470 to 1973 503 to 1       503/503
(100 %)
7 diff
(98.7 %id)
BP297633   .s 1475 to 2056 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
TI_149309000   .s 1478 to 2137 746 to 87   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 660/941
(70 %)
17 diff
(98.2 %id)
CB241867 Human Lung Epithelial cells, lung .s 1495 to 2171 694 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 676/677
(99 %)
2 diff
(99.8 %id)
BU734292 eye, RPE and Choroid .s 1499 to 2137 657 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 639/639
(100 %)
1 diff
(99.9 %id)
CA429639 Cell Line, Chondrosarcoma .s 1499 to 2137 657 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 639/639
(100 %)
5 diff
(99.3 %id)
BU620260 Cell Line, Chondrosarcoma .s 1536 to 2137 620 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 602/602
(100 %)
3 diff
(99.6 %id)
BE221673 malignant melanoma, metastatic to lymphnode, skin .s 1548 to 1872 325 to 1       325/325
(100 %)
2 diff
(99.4 %id)
BG768640 melanotic melanoma, high MDR (cell line), skin .s 1553 to 2066 1 to 519       517/739
(69 %)
20 diff
(97.3 %id)
BG770097 melanotic melanoma, high MDR (cell line), skin .s 1553 to 2125 1 to 572       572/573
(99 %)
2 diff
(99.7 %id)
CA424163 cell lines, Chondrosarcoma .s 1568 to 2137 589 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 571/573
(99 %)
17 diff
(97.1 %id)
AW515127 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .s 1569 to 1872 295 to 1       295/301
(98 %)
12 diff
(96.1 %id)
CA867065 Pancreas, Purified pancreatic islet .s 1576 to 2138 563 to 1   fully sequenced,   563/563
(100 %)
0 diff
(100 %id)
CD519487 White Matter .s 1588 to 2137 1 to 550   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 550/550
(100 %)
0 diff
(100 %id)
BE208233 adenocarcinoma cell line, ovary .s 1610 to 1900 298 to 7   fully sequenced,   292/298
(97 %)
5 diff
(98.4 %id)
BF922766 nervous_tumor .s 1611 to 1925 316 to 3     Submitted on the opposite strand 314/316
(99 %)
3 diff
(99.1 %id)
AI668921 Prostate .s 1620 to 2137 545 to 28   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 518/518
(100 %)
19 diff
(96.4 %id)
AA603135 breast .s 1632 to 2137 505 to 1       505/505
(100 %)
4 diff
(99.3 %id)
AW732226 lung, small cell carcinoma .s 1638 to 2173 536 to 1   tiling clone,   536/536
(100 %)
2 diff
(99.7 %id)
BM692127 eye, human retina .s 1643 to 1849 2 to 208   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 207/208
(99 %)
6 diff
(97.2 %id)
AI740590 pooled .s 1644 to 2171 551 to 24   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 528/528
(100 %)
18 diff
(96.6 %id)
CB321698 lung, Primary Lung Cystic Fibrosis EpithelialCells .s 1650 to 2137 506 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 488/488
(100 %)
0 diff
(100 %id)
BU687351 lung .s 1652 to 2137 504 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 486/486
(100 %)
5 diff
(99.0 %id)
BQ030010 lung, Metastatic Chondrosarcoma .s 1666 to 2137 490 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 472/472
(100 %)
0 diff
(100 %id)
DB566324 hypothalamus .s 1671 to 2135 1 to 465     Submitted on the opposite strand 465/467
(99 %)
2 diff
(99.6 %id)
BE001212 breast_normal .s 1676 to 1989 11 to 323       315/326
(96 %)
8 diff
(97.6 %id)
BE001152 breast_normal .s 1677 to 1989 11 to 333       332/336
(98 %)
58 diff
(82.8 %id)
BG897121 cartilage .s 1681 to 2032 112 to 463       352/395
(89 %)
10 diff
(97.5 %id)
DB556176 hypothalamus .s 1683 to 2135 1 to 455     Submitted on the opposite strand 455/457
(99 %)
8 diff
(98.3 %id)
BM688088 eye, human retina .s 1695 to 2137 1 to 442   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 442/442
(100 %)
1 diff
(99.8 %id)
DB555066 hypothalamus .s 1699 to 2137 1 to 439     Submitted on the opposite strand 439/439
(100 %)
1 diff
(99.8 %id)
DB564256 hypothalamus .s 1699 to 2135 1 to 439     Submitted on the opposite strand 439/441
(99 %)
4 diff
(99.1 %id)
BP424259 small intestine .s 1710 to 2138 1 to 428     Submitted on the opposite strand 428/428
(100 %)
1 diff
(99.8 %id)
BE838548 prostate_normal .s 1720 to 1998 281 to 2       280/281
(99 %)
0 diff
(100 %id)
BF835249 head_neck .s 1721 to 2072 11 to 362       352/362
(97 %)
6 diff
(98.4 %id)
BF380580 uterus_tumor .s 1724 to 1933 1 to 210       210/210
(100 %)
6 diff
(97.2 %id)
BQ378302 uterus_tumor .s 1724 to 1933 1 to 210       210/210
(100 %)
6 diff
(97.2 %id)
T59873 ovary .s 1742 to 2110 369 to 1       369/373
(98 %)
4 diff
(99.0 %id)
FN104376 breast carcinoma .s 1746 to 1847 103 to 1     Submitted on the opposite strand 103/103
(100 %)
2 diff
(98.1 %id)
BF477792 Prostate .s 1754 to 2139 386 to 1       386/386
(100 %)
2 diff
(99.5 %id)
FN095494 breast carcinoma .s 1772 to 1861 1 to 89       89/89
(100 %)
1 diff
(98.9 %id)
FN056028 breast carcinoma .s 1773 to 1868 96 to 1     Submitted on the opposite strand 96/96
(100 %)
0 diff
(100 %id)
FN086200 breast carcinoma .s 1773 to 1871 1 to 100       100/100
(100 %)
1 diff
(99.0 %id)
AA143329   .s 1774 to 2139 386 to 2       385/400
(96 %)
13 diff
(96.8 %id)
FN055221 breast carcinoma .s 1776 to 1873 98 to 1     Submitted on the opposite strand 98/99
(98 %)
0 diff
(100 %id)
BI090081 cervix .s 1788 to 2137 1 to 350   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 350/350
(100 %)
0 diff
(100 %id)
BU728532 eye, human retina .s 1788 to 2137 368 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 350/350
(100 %)
0 diff
(100 %id)
AA642576 normal prostate, Prostate .s 1802 to 2137 357 to 22   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 336/336
(100 %)
1 diff
(99.8 %id)
F29417 pectoral muscle (after mastectomy) .s 1809 to 2137 1 to 329   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 329/329
(100 %)
1 diff
(99.7 %id)
DB532114 hippocampus .s 1812 to 2137 76 to 401     Submitted on the opposite strand 326/401
(81 %)
0 diff
(100 %id)
BG500929 adenocarcinoma, Prostate .s 1813 to 2130 1 to 319       319/368
(86 %)
5 diff
(98.7 %id)
FN148792 breast carcinoma .s 1822 to 1921 1 to 97       97/100
(97 %)
8 diff
(92.0 %id)
CB105434 Liver .s 1823 to 2139 1 to 317       317/320
(99 %)
3 diff
(99.1 %id)
AW969755   .s 1850 to 2137 111 to 398   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 288/398
(72 %)
6 diff
(98.5 %id)
AA483887 Ewing's sarcoma .s 1850 to 2137 8 to 292   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 285/292
(97 %)
6 diff
(98.0 %id)
AW731800   .s 1873 to 2170 308 to 11   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 298/298
(100 %)
5 diff
(98.4 %id)
AI094043 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .s 1875 to 2138 264 to 1       264/264
(100 %)
4 diff
(98.5 %id)
AI285708 esophagus, squamous cell carcinoma .s 1887 to 2171 285 to 1       285/285
(100 %)
0 diff
(100 %id)
AI590010 adenocarcinoma, Pancreas .s 1887 to 2139 259 to 7       253/259
(97 %)
0 diff
(100 %id)
AW264807 lung, two pooled squamous cell carcinomas .s 1887 to 2138 252 to 1       252/252
(100 %)
0 diff
(100 %id)
AA159703   .s 1888 to 2139 1 to 253       253/253
(100 %)
4 diff
(98.5 %id)
FN161548 breast carcinoma .s 1906 to 2027 1 to 119       119/119
(100 %)
5 diff
(95.8 %id)
FN049350 breast carcinoma .s 1909 to 2005 1 to 99       99/100
(99 %)
3 diff
(97.0 %id)
FN146980 breast carcinoma .s 1925 to 2038 1 to 119       119/119
(100 %)
5 diff
(95.8 %id)
AA873117 pooled germ cell tumors .s 1951 to 2173 224 to 3       222/224
(99 %)
0 diff
(100 %id)
AI354437 ovary, tumor, 5 pooled (see description) .s 1960 to 2138 179 to 1       179/179
(100 %)
0 diff
(100 %id)
EC481417 Prostate .s 1961 to 2068 12 to 120       109/120
(90 %)
6 diff
(95.0 %id)
EC497183 Prostate .s 1996 to 2105 1 to 109       109/109
(100 %)
6 diff
(94.5 %id)
T52426 fetal spleen, Spleen .s 1996 to 2172 1 to 177   fully sequenced,   177/177
(100 %)
5 diff
(97.2 %id)
FN099892 breast carcinoma .s 2057 to 2117 61 to 1     Submitted on the opposite strand 61/62
(98 %)
0 diff
(100 %id)
T52353 fetal spleen, Spleen .s 2061 to 2142 82 to 1   fully sequenced,   82/82
(100 %)
2 diff
(97.6 %id)
BE501663 malignant melanoma, metastatic to lymphnode, skin .s 2083 to 2171 89 to 1       89/89
(100 %)
0 diff
(100 %id)
FN058593 breast carcinoma .s 2099 to 2170 75 to 4     Submitted on the opposite strand 72/75
(96 %)
0 diff
(100 %id)
DB093605 testis .t 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
BE908982 epithelioid carcinoma, Pancreas .t 421 to 1173 1 to 751 E190G T191D P192S K193Q H194A ... tiling clone,   751/1052
(71 %)
15 diff
(98.6 %id)
BQ929719 leiomyosarcoma, uterus .u 1 to 858 1 to 858 K19I L20R G21E K22E K23G ... tiling clone,   858/858
(100 %)
13 diff
(98.5 %id)
DC383513 Prostate .va 1 to 573 1 to 573   tiling clone,   573/573
(100 %)
2 diff
(99.7 %id)
DC429406   .va 5 to 597 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BM545877 ovary (pool of 3) .va 11 to 958 15 to 964 E146X E147G S148E G149W L151P ... tiling clone,   950/1159
(81 %)
23 diff
(98.1 %id)
DC348951   .va 108 to 678 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DC428184   .va 110 to 679 1 to 570       570/570
(100 %)
0 diff
(100 %id)
BP197795 adrenal gland .va 144 to 725 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BI561945 testis .va 234 to 920 1 to 689       689/1120
(61 %)
19 diff
(98.4 %id)
DC359599   .va 235 to 753 1 to 519       519/519
(100 %)
1 diff
(99.9 %id)
TI_44349774   .va 235 to 920 118 to 805       688/1236
(55 %)
23 diff
(98.2 %id)
CX759487 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .va 245 to 950 1 to 706   tiling clone, Submitted on the opposite strand 706/706
(100 %)
0 diff
(100 %id)
TI_149314450   .vb 1 to 731 813 to 87 T3P G4K K5G E6D I7E ... tiling clone, AAA   726/920
(78 %)
17 diff
(98.2 %id)
BU568474 testis .vb 152 to 731 1 to 579   tiling clone,   579/583
(99 %)
7 diff
(98.8 %id)
AW418493 2 pooled tumors (clear cell type), Kidney .vb 169 to 595 427 to 1       427/442
(96 %)
10 diff
(97.8 %id)
BG490486 large cell carcinoma, lung .vb 212 to 727 1 to 519       519/835
(62 %)
61 diff
(92.7 %id)
BQ949712 large cell carcinoma, lung .vb 214 to 706 1 to 494       494/1233
(40 %)
13 diff
(99.0 %id)
DB450306 testis .vc 1 to 457 1 to 456   tiling clone,   456/456
(100 %)
2 diff
(99.6 %id)
BM353954 Pancreas, Purified pancreatic islet .vc 8 to 645 1 to 638   tiling clone,   638/638
(100 %)
2 diff
(99.7 %id)
DB481103 hippocampus .vd 1 to 480 6 to 491   tiling clone,   487/491
(99 %)
8 diff
(98.4 %id)
DB549922 hippocampus .vd 394 to 871 1 to 477   tiling clone, Submitted on the opposite strand 477/477
(100 %)
3 diff
(99.4 %id)
CB047073 2 pooled tumors (clear cell type), Kidney .ve 1 to 437 10 to 446   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 437/446
(97 %)
6 diff
(98.7 %id)
BX335530 Placenta Cot 25-normalized .ve 163 to 839 688 to 1       688/688
(100 %)
23 diff
(96.7 %id)
AA303616 aorta .ve 180 to 330 1 to 151       151/151
(100 %)
0 diff
(100 %id)
TI_154105173   .ve 183 to 888 792 to 86   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 707/711
(99 %)
4 diff
(99.5 %id)
CB241575 Human Lung Epithelial cells, lung .ve 183 to 888 720 to 16   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 705/705
(100 %)
1 diff
(99.9 %id)
BU631911 cell lines, Chondrosarcoma .ve 193 to 888 709 to 16   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 694/694
(100 %)
3 diff
(99.6 %id)
AA127785 uterus .ve 199 to 609 1 to 411   fully sequenced,   411/411
(100 %)
0 diff
(100 %id)
CA446452 Chondrosarcoma, Left Pubic Bone .ve 199 to 888 705 to 16   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 690/690
(100 %)
0 diff
(100 %id)
BE828508 lung_tumor .ve 201 to 498 20 to 319       300/319
(94 %)
8 diff
(97.5 %id)
AI690830 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .ve 214 to 894 703 to 23   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 681/681
(100 %)
13 diff
(98.1 %id)
AA905576 pooled .ve 218 to 666 450 to 1       450/453
(99 %)
1 diff
(99.8 %id)
CB047072 2 pooled tumors (clear cell type), Kidney .ve 407 to 894 528 to 41   fully sequenced, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 488/488
(100 %)
11 diff
(97.8 %id)
AA127685 uterus .ve 579 to 885 296 to 1   fully sequenced,   296/296
(100 %)
1 diff
(99.7 %id)
DC299096   .vf 1 to 570 2 to 571   tiling clone,   571/571
(100 %)
0 diff
(100 %id)
CN407361 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .vf 6 to 737 1 to 731       731/731
(100 %)
4 diff
(99.5 %id)
DC301566   .vf 18 to 576 1 to 559       559/560
(99 %)
1 diff
(99.9 %id)
DC349098   .vf 129 to 693 1 to 565       565/565
(100 %)
0 diff
(100 %id)
BI518795 leukocyte .vf 196 to 889 1 to 697 E124D E146D E147G S148E G149W ... tiling clone,   697/698
(99 %)
5 diff
(99.3 %id)
TI_44459744   .vf 196 to 889 103 to 799 E124D E146D E147G S148E G149W ...     697/800
(87 %)
11 diff
(98.7 %id)
DC329540 corpus callosum .vf 200 to 750 29 to 579   tiling clone,   551/551
(100 %)
0 diff
(100 %id)
DA405260 thalamus .vg 1 to 541 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
DB071489 testis .vg 26 to 568 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB071535 testis .vg 26 to 578 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
AW136303   .vh 1 to 459 3 to 461   tiling clone, Submitted on the opposite strand 461/461
(100 %)
5 diff
(99.0 %id)
BU930406 Prostate .vh 1 to 726 1 to 728 exact     728/733
(99 %)
6 diff
(99.2 %id)
BU602348 mixed (pool of 40 RNAs) .vh 12 to 725 1 to 716 S168Q L169P E170*     716/727
(98 %)
9 diff
(98.8 %id)
BF433624 carcinoid, lung .vh 13 to 495 1 to 482     Submitted on the opposite strand 482/482
(100 %)
4 diff
(99.2 %id)
AA099448 uterus .vh 14 to 442 1 to 431   fully sequenced,   431/431
(100 %)
7 diff
(98.4 %id)
BX111053 uterus .vh 15 to 667 1 to 653 exact     653/656
(99 %)
1 diff
(99.9 %id)
BM710198 eye, optic nerve .vh 17 to 354 1 to 338   fully sequenced,   338/338
(100 %)
0 diff
(100 %id)
BQ631952 Pancreas, Purified pancreatic islet .vh 18 to 354 1 to 337   fully sequenced,   337/337
(100 %)
2 diff
(99.5 %id)
AW342089 carcinoid, lung .vh 19 to 363 1 to 345     Submitted on the opposite strand 345/345
(100 %)
1 diff
(99.8 %id)
BC051382 Liver, hepatocellular carcinoma .vh 35 to 715 1 to 681 exact tiling clone, available from MGC, AAA   681/681
(100 %)
0 diff
(100 %id)
NM_138476.2   .vh 35 to 715 1 to 681 exact RefSeq, AAA   681/681
(100 %)
0 diff
(100 %id)
BQ645023 hepatocellular carcinoma, cell line, Liver .vh 37 to 619 1 to 584       584/948
(61 %)
7 diff
(99.3 %id)
AA258086 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vh 53 to 462 1 to 405   fully sequenced,   405/405
(100 %)
8 diff
(98.1 %id)
AK312038 pericardium .vh 63 to 645 1 to 583 exact     583/583
(100 %)
0 diff
(100 %id)
DA820988 pericardium .vh 64 to 649 2 to 587 exact capped   586/586
(100 %)
0 diff
(100 %id)
DR005606 Prostate .vh 68 to 667 1 to 599 exact     599/599
(100 %)
7 diff
(98.9 %id)
BM271809 Pancreas, Purified pancreatic islet .vh 70 to 579 16 to 525       510/525
(97 %)
6 diff
(98.9 %id)
AA326791 brain, cerebellum .vh 73 to 333 1 to 263       263/321
(81 %)
8 diff
(97.6 %id)
BM727580 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vh 89 to 354 1 to 266   fully sequenced,   266/266
(100 %)
0 diff
(100 %id)
BU954646 mixed (pool of 40 RNAs) .vh 107 to 711 1 to 604 S168A E170X E171R S172A P173H ...     604/610
(99 %)
4 diff
(99.4 %id)
AI948475 2 pooled tumors (clear cell type), Kidney .vh 108 to 717 612 to 3 exact     610/613
(99 %)
0 diff
(100 %id)
BQ774333 Chondrosarcoma Grade II, Left Pelvis .vh 109 to 725 635 to 19 exact AAA   617/617
(100 %)
0 diff
(100 %id)
TI_1948223388   .vh 114 to 518 137 to 542       406/1479
(27 %)
18 diff
(98.8 %id)
TI_1948223622   .vh 114 to 644 130 to 665       536/637
(84 %)
21 diff
(96.8 %id)
TI_1948223888   .vh 114 to 517 134 to 537       404/1454
(27 %)
11 diff
(99.3 %id)
TI_1948223889   .vh 114 to 644 131 to 665       535/625
(85 %)
23 diff
(96.4 %id)
TI_1948224170   .vh 114 to 644 127 to 658       532/1426
(37 %)
11 diff
(99.3 %id)
EL736113 mixed .vh 115 to 643 1 to 529       529/604
(87 %)
1 diff
(99.9 %id)
AI767657 Kidney .vh 115 to 715 610 to 11 H103T F104L E105K R106G L107C ... AAA   600/600
(100 %)
7 diff
(98.9 %id)
AI813313 2 pooled tumors (clear cell type), Kidney .vh 115 to 726 616 to 4 R3G P114S S116L Q117P M118D ...     613/616
(99 %)
2 diff
(99.7 %id)
BM264449 Pancreas, Purified pancreatic islet .vh 139 to 715 577 to 1       577/577
(100 %)
1 diff
(99.9 %id)
BM511413 insulinoma, Pancreas .vh 142 to 354 8 to 220   fully sequenced,   213/220
(96 %)
0 diff
(100 %id)
BF223834 carcinoid, lung .vh 154 to 726 577 to 4       574/594
(96 %)
9 diff
(98.5 %id)
BU954053 mixed (pool of 40 RNAs) .vh 171 to 719 1 to 548       548/578
(94 %)
5 diff
(99.2 %id)
BQ013583 placenta .vh 171 to 725 572 to 18   AAA   555/555
(100 %)
2 diff
(99.7 %id)
CB306090 lung, Primary Lung Cystic Fibrosis EpithelialCells .vh 175 to 713 555 to 17   AAA   539/539
(100 %)
0 diff
(100 %id)
AI949162 2 pooled tumors (clear cell type), Kidney .vh 197 to 726 536 to 7       530/536
(98 %)
0 diff
(100 %id)
BF312811 brain, neuroblastoma .vh 206 to 729 94 to 618   AAA   525/618
(84 %)
3 diff
(99.6 %id)
BM510589 insulinoma, Pancreas .vh 293 to 715 447 to 26   fully sequenced, AAA   422/422
(100 %)
1 diff
(99.8 %id)
BQ632245 Pancreas, Purified pancreatic islet .vh 293 to 716 424 to 1   fully sequenced,   424/424
(100 %)
0 diff
(100 %id)
BM671619 eye, optic nerve .vh 293 to 725 451 to 19   fully sequenced, AAA   433/433
(100 %)
0 diff
(100 %id)
BM681800 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vh 293 to 718 443 to 16   fully sequenced, AAA   428/428
(100 %)
2 diff
(99.6 %id)
AA099300 uterus .vh 401 to 726 329 to 3   fully sequenced,   327/329
(99 %)
0 diff
(100 %id)
AA256616 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vh 401 to 718 316 to 1   fully sequenced,   316/316
(100 %)
2 diff
(99.4 %id)
DN993851 brain, whole brain .vi 1 to 600 1 to 602 V146X D147R V148R S149Q K150Q ... tiling clone,   602/602
(100 %)
7 diff
(98.9 %id)
AA095687   .vi 2 to 188 1 to 184   tiling clone,   184/187
(98 %)
13 diff
(93.1 %id)
T25805   .vi 9 to 173 1 to 161       162/161
(100 %)
11 diff
(93.2 %id)
AA090984   .vi 15 to 108 1 to 92       92/112
(82 %)
5 diff
(95.6 %id)
FN153465 breast carcinoma .vi 89 to 183 95 to 1     Submitted on the opposite strand 95/100
(95 %)
0 diff
(100 %id)
T07614   .vj-u 1 to 352 1 to 353   tiling clone,   353/354
(99 %)
3 diff
(99.2 %id)
BF663442 B-cells, primary B-cells from tonsils (cell line) .vj-u 9 to 764 1 to 749       749/1035
(72 %)
31 diff
(97.1 %id)
CA454734   .vj-u 25 to 906 1 to 890   tiling clone,   890/893
(99 %)
19 diff
(97.9 %id)
W78796 liver and spleen .vj-u 32 to 428 1 to 395   fully sequenced,   395/395
(100 %)
7 diff
(98.3 %id)
CF147020 CNCAP(3)T-225 cell line, Prostate .vj-u 143 to 868 7 to 731       725/731
(99 %)
6 diff
(99.2 %id)
TI_154179573   .vj-u 143 to 961 69 to 874       806/809
(99 %)
18 diff
(97.8 %id)
W94113 liver and spleen .vj-u 408 to 822 416 to 1   fully sequenced,   416/416
(100 %)
2 diff
(99.6 %id)
BI057277 placenta_normal .vj-u 547 to 1097 561 to 11       551/561
(98 %)
0 diff
(100 %id)
BM756963 Ascites, stomach .vj-u 690 to 1015 1 to 326       326/326
(100 %)
1 diff
(99.7 %id)
BM783926 Ascites, stomach .vj-u 690 to 1372 1 to 683   tiling clone,   683/683
(100 %)
0 diff
(100 %id)
TI_154120409   .vj-u 782 to 1710 991 to 86 T2A W9G L11W D12I F13S ... tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 906/972
(93 %)
28 diff
(97.2 %id)
TI_154115280   .vj-u 822 to 1703 953 to 90 R7E W9G G10A L11G D12F ... AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 864/961
(89 %)
22 diff
(97.8 %id)
TI_149294416   .vj-u 885 to 1703 876 to 74 Q3W Q4E H5R G6W R7G ... AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 803/822
(97 %)
22 diff
(97.4 %id)
CA449038 Chondrosarcoma, Left Pubic Bone .vj-u 946 to 1703 770 to 16   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 755/755
(100 %)
3 diff
(99.7 %id)
AA919004 pooled .vj-u 957 to 1439 1 to 482     Submitted on the opposite strand 482/482
(100 %)
15 diff
(96.9 %id)
BU630261 cell lines, Chondrosarcoma .vj-u 981 to 1703 738 to 16   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 723/724
(99 %)
1 diff
(99.9 %id)
BX363470   .vk 1 to 1088 1 to 1073 exact tiling clone,   1073/1091
(98 %)
21 diff
(98.1 %id)
TI_157599175   .vk 124 to 697 666 to 95 A2F E3G R4A T5L A7P ... AAA   572/572
(100 %)
33 diff
(94.3 %id)
TI_157609087   .vk 124 to 704 705 to 124 D11V A54P L142* AAA   582/585
(99 %)
7 diff
(98.9 %id)
AI700544 carcinoid, lung .vk 181 to 695 515 to 1       515/515
(100 %)
0 diff
(100 %id)
AA936685 Kidney .vk 189 to 697 506 to 1       506/511
(99 %)
5 diff
(99.1 %id)
AW612775 carcinoid, lung .vk 196 to 704 509 to 1       509/509
(100 %)
3 diff
(99.5 %id)
AI861886 Kidney .vk 219 to 692 474 to 1       474/474
(100 %)
0 diff
(100 %id)
AI703334 carcinoid, lung .vk 220 to 704 485 to 1       485/485
(100 %)
0 diff
(100 %id)
AI264682 Kidney .vk 226 to 698 473 to 1       473/473
(100 %)
0 diff
(100 %id)
TI_149289376   .vk 229 to 704 567 to 92   AAA   476/631
(75 %)
0 diff
(100 %id)
BM970937 lung .vk 229 to 704 494 to 19   AAA   476/494
(96 %)
0 diff
(100 %id)
EL946355 eyeball .vk 237 to 697 24 to 484   AAA   461/484
(95 %)
6 diff
(98.8 %id)
BE856145 Prostate .vk 246 to 682 449 to 12       438/449
(97 %)
0 diff
(100 %id)
AI263446 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vk 262 to 705 449 to 6       444/449
(98 %)
0 diff
(100 %id)
AI379699 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vk 274 to 704 442 to 13   AAA   430/430
(100 %)
1 diff
(99.8 %id)
AW242781 Kidney .vk 274 to 705 449 to 2       448/449
(99 %)
2 diff
(99.6 %id)
AI242297 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vk 281 to 690 410 to 1       410/410
(100 %)
3 diff
(99.3 %id)
AW271650 Kidney .vk 292 to 705 414 to 1       414/414
(100 %)
1 diff
(99.8 %id)
AI148360 heart .vk 297 to 705 410 to 2       409/413
(99 %)
3 diff
(99.3 %id)
AI804280 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vk 305 to 705 406 to 6       401/406
(98 %)
0 diff
(100 %id)
AI308179 2 pooled tumors (clear cell type), Kidney .vk 307 to 705 403 to 5       399/403
(99 %)
0 diff
(100 %id)
AI032042 liver and spleen .vk 309 to 692 384 to 1       384/384
(100 %)
0 diff
(100 %id)
AI139663 uterus .vk 313 to 704 406 to 15   AAA   392/392
(100 %)
0 diff
(100 %id)
AI334639 2 pooled tumors (clear cell type), Kidney .vk 315 to 705 395 to 5       391/395
(98 %)
0 diff
(100 %id)
AI261855 Kidney .vk 330 to 694 365 to 1       365/365
(100 %)
0 diff
(100 %id)
AW205350   .vk 381 to 710 346 to 16   AAA   331/331
(100 %)
4 diff
(98.8 %id)
AW196249 pooled germ cell tumors .vk 411 to 692 283 to 1       283/283
(100 %)
2 diff
(99.3 %id)
AA372498 colon .vk 434 to 697 1 to 264       264/264
(100 %)
1 diff
(99.7 %id)
AW963624   .vk 435 to 697 1 to 263   AAA   263/263
(100 %)
0 diff
(100 %id)
AW300165 Kidney .vk 453 to 698 250 to 5       246/250
(98 %)
0 diff
(100 %id)
AI765810 2 pooled tumors (clear cell type), Kidney .vl 1 to 437 453 to 17 S114F R125P tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 437/437
(100 %)
3 diff
(99.4 %id)
DA014451 adrenal gland .vm 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DB130576 thymus .vn 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
H19952 brain .vo 1 to 368 1 to 372   tiling clone,   372/452
(82 %)
13 diff
(97.2 %id)
CB046237 2 pooled tumors (clear cell type), Kidney .vo 36 to 551 10 to 525 Y14H Q59H Y89C Q109R S116C ...     516/525
(98 %)
14 diff
(97.4 %id)
CB046258 2 pooled tumors (clear cell type), Kidney .vo 36 to 672 10 to 646 exact tiling clone,   637/646
(98 %)
6 diff
(99.1 %id)
BQ892579 epidermoid carcinoma, cell line, lung .vo 95 to 732 1 to 648 Q117P M118D I119D F120L F121L ...     648/1001
(64 %)
17 diff
(98.4 %id)
BQ941018 epidermoid carcinoma, cell line, lung .vo 95 to 750 1 to 656 exact AAA   656/656
(100 %)
0 diff
(100 %id)
BU070157 insulinoma, Pancreas .vo 113 to 400 1 to 288   fully sequenced,   288/288
(100 %)
7 diff
(97.6 %id)
AA775704 heart .vo 224 to 747 523 to 1       523/523
(100 %)
3 diff
(99.5 %id)
AI343971 colon, colon tumor, RER+ .vo 308 to 757 450 to 1       450/450
(100 %)
0 diff
(100 %id)
AI627852 Kidney .vo 318 to 745 457 to 30   AAA   428/428
(100 %)
4 diff
(99.1 %id)
BQ012905 placenta .vo 323 to 747 440 to 17   AAA   424/424
(100 %)
3 diff
(99.3 %id)
AI310308 2 pooled tumors (clear cell type), Kidney .vo 325 to 758 436 to 3       434/436
(99 %)
0 diff
(100 %id)
AA918790 Kidney .vo 358 to 763 432 to 29   tiling clone, AAA   404/404
(100 %)
1 diff
(99.8 %id)
AW135234   .vo 364 to 749 10 to 395     Submitted on the opposite strand 386/403
(95 %)
7 diff
(98.3 %id)
BU069916 insulinoma, Pancreas .vo 370 to 717 368 to 24   fully sequenced,   345/368
(93 %)
1 diff
(99.8 %id)
H19953 brain .vo 408 to 756 355 to 1       355/364
(97 %)
13 diff
(96.5 %id)
AI478360 Kidney .vo 420 to 750 331 to 1       331/331
(100 %)
0 diff
(100 %id)
BE793662 lung, small cell carcinoma .vp 1 to 770 1 to 773 Y27T S28A V29W E30R N31M ... tiling clone,   773/963
(80 %)
21 diff
(97.9 %id)
AL703092 human skeletal muscle .vp 209 to 453 9 to 253   tiling clone,   245/253
(96 %)
8 diff
(96.9 %id)
AK092821 small intestine .vq 1 to 2101 2 to 2102 exact tiling clone, available from FLJ,   2102/2102
(100 %)
0 diff
(100 %id)
AX747749   .vq 1 to 2101 2 to 2102 exact     2102/2102
(100 %)
0 diff
(100 %id)
DA923057 small intestine .vq 1 to 567 2 to 568 exact capped   567/567
(100 %)
0 diff
(100 %id)
AA748508 germinal center B cell .vq 582 to 896 336 to 23   AAA   314/314
(100 %)
4 diff
(98.8 %id)
BU567000 mixed (pool of 40 RNAs) .vq 698 to 886 1 to 189   AAA   189/189
(100 %)
1 diff
(99.5 %id)
AI197930 Prostate .vq 728 to 896 188 to 20   AAA   169/169
(100 %)
1 diff
(99.5 %id)
AI685515 Prostate .vq 728 to 896 188 to 20   AAA   169/169
(100 %)
1 diff
(99.5 %id)
AI810294 Prostate .vq 728 to 896 190 to 22   AAA   169/169
(100 %)
0 diff
(100 %id)
AI972553 Prostate .vq 728 to 896 188 to 20   AAA   169/169
(100 %)
1 diff
(99.5 %id)
AI128579 heart .vq 767 to 884 118 to 1       118/118
(100 %)
0 diff
(100 %id)
CN276356 embryonic stem cells, DMSO-treated H9 cellline .vq 790 to 884 1 to 95   AAA   95/95
(100 %)
0 diff
(100 %id)
BM041056 Kidney, Wilms' tumor, cell line .vq 860 to 1519 1 to 667   fully sequenced,   667/667
(100 %)
8 diff
(98.9 %id)
BX491564   .vq 1076 to 1656 590 to 10     Submitted on the opposite strand 581/590
(98 %)
0 diff
(100 %id)
CK001998 brain/CNS, Bulk tissue from Human Spinal cord .vq 1383 to 1814 1 to 432       432/432
(100 %)
2 diff
(99.6 %id)
BE272064 adenocarcinoma cell line, ovary .vq 1386 to 2065 1 to 680       680/680
(100 %)
16 diff
(97.7 %id)
BM041722 Kidney, Wilms' tumor, cell line .vq 1489 to 2053 564 to 1   fully sequenced,   564/564
(100 %)
3 diff
(99.5 %id)
TI_154022768   .vq 1523 to 2117 730 to 138   AAA   593/822
(72 %)
0 diff
(100 %id)
DB332015 small intestine .vq 1554 to 2101 551 to 1       551/551
(100 %)
3 diff
(99.5 %id)
CA439217 lung, Metastatic Chondrosarcoma .vq 1648 to 2117 470 to 1   tiling clone,   470/470
(100 %)
13 diff
(97.3 %id)
DA948292 Spleen .vq 1755 to 2333 2 to 582   tiling clone, capped   581/581
(100 %)
3 diff
(99.5 %id)
AI459866 colon .vq 1762 to 2093 332 to 1       332/347
(95 %)
1 diff
(99.8 %id)
CD685050 normal nasopharynx .vq 1764 to 2169 32 to 437   tiling clone,   406/437
(92 %)
6 diff
(98.7 %id)
BI600543 brain, hypothalamus .vr 1 to 585 3 to 586 exact tiling clone, AAA   586/586
(100 %)
6 diff
(99.0 %id)
TI_45210523   .vr 4 to 585 90 to 670 exact tiling clone, AAA   581/670
(86 %)
7 diff
(99.0 %id)
BC046912 Brain, hypothalamus .vr 5 to 585 1 to 581 exact tiling clone, available from MGC, AAA   581/581
(100 %)
0 diff
(100 %id)
ES313854 beard hair, skin .vr 20 to 556 1 to 538 G113W N115K W116L A117G F118L ...     538/547
(98 %)
4 diff
(99.3 %id)
AW961237   .vr 74 to 585 1 to 512 exact AAA   512/512
(100 %)
0 diff
(100 %id)
BM478158 lymph, lymphoma, cell line .vr 80 to 585 1 to 506 exact AAA   506/506
(100 %)
0 diff
(100 %id)
AW237386 Kidney .vr 120 to 577 458 to 1       458/458
(100 %)
4 diff
(99.2 %id)
AW139107   .vr 220 to 578 373 to 15   AAA   359/368
(97 %)
0 diff
(100 %id)
AI350725 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vr 225 to 586 368 to 7       362/368
(98 %)
0 diff
(100 %id)
BF431440 Kidney .vr 230 to 573 354 to 11   AAA   344/344
(100 %)
2 diff
(99.5 %id)
CD518977 White Matter .vs 1 to 902 1 to 911 exact tiling clone,   911/967
(94 %)
18 diff
(98.2 %id)
TI_57239651   .vt 1 to 916 25 to 940 exact tiling clone,   916/966
(94 %)
12 diff
(98.8 %id)
BI916133 brain .vt 7 to 488 1 to 482       482/482
(100 %)
2 diff
(99.6 %id)
DA269567 caudate nucleus .vu 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
CB995822 placenta, pre-eclamptic placenta .vv 1 to 710 28 to 743   tiling clone,   716/759
(94 %)
15 diff
(98.1 %id)
BF313713 brain, neuroblastoma .vv 31 to 656 1 to 628       628/628
(100 %)
3 diff
(99.6 %id)
BF313805 brain, neuroblastoma .vv 31 to 648 1 to 618       618/618
(100 %)
1 diff
(99.9 %id)
BF317354 brain, neuroblastoma .vv 31 to 759 1 to 720 A44V A45L S46Q R47G T48Q ... tiling clone,   720/786
(91 %)
14 diff
(98.3 %id)
BI198724 brain, neuroblastoma .vv 31 to 678 1 to 649       649/649
(100 %)
2 diff
(99.7 %id)
CN368532 embryonic stem cells, DMSO-treated H9 cellline .vv 96 to 739 1 to 644 exact tiling clone,   644/644
(100 %)
0 diff
(100 %id)
DB091816 testis .vw 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
BF737026 bladder_tumor .vx 1 to 518 1 to 518   tiling clone,   518/518
(100 %)
24 diff
(95.4 %id)
BG698318 skin .vx 191 to 906 1 to 716 exact tiling clone,   716/716
(100 %)
3 diff
(99.6 %id)
AW863668 stomach_normal .vx 250 to 829 9 to 588 H111P     580/588
(98 %)
7 diff
(98.9 %id)
BG742660 skin .vx 849 to 1605 1 to 754   tiling clone,   754/755
(99 %)
5 diff
(99.4 %id)
BU621336 cell lines, Chondrosarcoma .vx 900 to 1784 529 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 482/511
(94 %)
16 diff
(96.9 %id)
DB333645 Spleen .vx 1216 to 1784 572 to 1       572/572
(100 %)
5 diff
(99.2 %id)
AI191812 heart .vx 1342 to 1785 444 to 1   tiling clone,   444/444
(100 %)
0 diff
(100 %id)
DA323462 hippocampus .vy 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
DB280287 uterus .vy 1 to 539 2 to 540 exact tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
DA823840 pericardium .vz 1 to 522 2 to 524 exact tiling clone, capped   523/523
(100 %)
1 diff
(99.9 %id)
DA404850 thalamus .wa 1 to 529 2 to 529 exact tiling clone, capped   528/528
(100 %)
1 diff
(99.9 %id)
DB241264 trachea .wb 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DA782421 brain .wb 15 to 572 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
BG979999 colon_normal .wb 470 to 970 510 to 12   tiling clone,   499/510
(97 %)
0 diff
(100 %id)
CK005196 brain/CNS, Human Brain - Frontal Cortex .wc 1 to 634 1 to 633 exact tiling clone, AAA   633/633
(100 %)
7 diff
(98.9 %id)
DA080449 cerebellum .wc 73 to 632 2 to 561 exact capped   560/560
(100 %)
1 diff
(99.9 %id)
BF589329 pooled .wc 166 to 666 503 to 3 exact tiling clone,   501/503
(99 %)
0 diff
(100 %id)
DB236582 trachea .wd 1 to 569 4 to 574 exact tiling clone, capped   573/582
(98 %)
4 diff
(99.4 %id)
DA311469 hippocampus .wd 32 to 592 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DB091717 testis .wd 32 to 574 2 to 544 exact capped   543/543
(100 %)
0 diff
(100 %id)
CB070148 Pancreas, Purified pancreatic islet .we 1 to 291 1 to 289   fully sequenced,   289/289
(100 %)
12 diff
(95.9 %id)
BM694169 eye, RPE and Choroid .we 4 to 260 1 to 257   tiling clone,   257/257
(100 %)
1 diff
(99.7 %id)
EC450219 Prostate .we 11 to 119 1 to 110       110/110
(100 %)
8 diff
(92.8 %id)
EC545579 Prostate .we 15 to 121 1 to 108   tiling clone,   108/108
(100 %)
4 diff
(96.3 %id)
FN084283 breast carcinoma .we 142 to 200 61 to 1     Submitted on the opposite strand 61/64
(95 %)
1 diff
(98.5 %id)
EC502142 Prostate .we 181 to 257 14 to 90       77/93
(82 %)
7 diff
(92.5 %id)
EC530950 Prostate .we 189 to 261 19 to 92       74/92
(80 %)
6 diff
(93.5 %id)
FN072608 breast carcinoma .we 198 to 257 61 to 2     Submitted on the opposite strand 60/61
(98 %)
0 diff
(100 %id)
CB069659 Pancreas, Purified pancreatic islet .we 230 to 762 535 to 3   tiling clone, fully sequenced,   533/535
(99 %)
0 diff
(100 %id)
BM312634 Pancreas, Purified pancreatic islet .we 262 to 627 1 to 366       366/366
(100 %)
6 diff
(98.4 %id)
BM312330 Pancreas, Purified pancreatic islet .we 277 to 625 349 to 1       349/349
(100 %)
9 diff
(97.5 %id)
BE669798 carcinoid, lung .we 304 to 624 322 to 2       321/322
(99 %)
5 diff
(98.5 %id)
FN145487 breast carcinoma .we 321 to 424 98 to 1     Submitted on the opposite strand 98/98
(100 %)
6 diff
(93.9 %id)
BI493503 cochlea, ear .we 379 to 525 8 to 154       147/154
(95 %)
7 diff
(95.5 %id)
FN117214 breast carcinoma .we 393 to 481 1 to 88       88/95
(92 %)
2 diff
(97.9 %id)
BF224331 carcinoid, lung .we 451 to 720 269 to 1       269/269
(100 %)
5 diff
(98.2 %id)
FN080403 breast carcinoma .we 492 to 575 81 to 1     Submitted on the opposite strand 81/81
(100 %)
0 diff
(100 %id)
TI_227713316   .wf 1 to 888 975 to 99 exact tiling clone, AAA   877/971
(90 %)
17 diff
(98.3 %id)
CD367630 Alveolar Macrophage, lung .wf 195 to 888 713 to 19 exact tiling clone, AAA   695/695
(100 %)
1 diff
(99.9 %id)
TI_149294910   .wf 271 to 895 725 to 101 D21N AAA   625/907
(68 %)
9 diff
(99.1 %id)
TI_149288804   .wf 275 to 888 723 to 110 exact AAA   614/683
(89 %)
6 diff
(99.2 %id)
TI_149288827   .wf 275 to 888 723 to 110 exact AAA   614/675
(90 %)
5 diff
(99.3 %id)
BC104664 Pooled, 40 cell lines .wf 278 to 889 1 to 612 exact AAA   612/612
(100 %)
3 diff
(99.6 %id)
CD387533 embryonic trophoblasts, made from WA01 stemcells .wf 279 to 895 10 to 627 exact AAA   618/627
(98 %)
6 diff
(99.1 %id)
BU534127 mixed (pool of 40 RNAs) .wf 279 to 887 1 to 609 exact     609/648
(93 %)
3 diff
(99.6 %id)
CF130271 Chondrosarcoma Lung Metastasis cell lines, lung .wf 279 to 888 1 to 610 exact AAA   610/610
(100 %)
0 diff
(100 %id)
NM_006156.2   .wf 279 to 903 1 to 625 exact RefSeq,   625/625
(100 %)
0 diff
(100 %id)
TI_154192220   .wf 279 to 888 51 to 660 exact AAA   610/610
(100 %)
0 diff
(100 %id)
BG715588 brain, hypothalamus .wf 280 to 888 1 to 609 exact AAA   609/609
(100 %)
6 diff
(99.1 %id)
BM985140 lung .wf 280 to 895 634 to 19 D21N AAA   616/616
(100 %)
5 diff
(99.2 %id)
BQ061101 lymph, lymphoma, cell line .wf 281 to 895 1 to 615 exact AAA   615/615
(100 %)
0 diff
(100 %id)
CD175132 embryonic stem cells, WA01, passage 38 .wf 282 to 888 23 to 629 exact AAA   607/629
(96 %)
6 diff
(99.1 %id)
CD246226 embryonic stem cells, WA01, passage 38 .wf 282 to 889 24 to 631 exact AAA   608/631
(96 %)
6 diff
(99.1 %id)
CD246725 embryonic stem cells, WA01, passage 38 .wf 282 to 895 26 to 639 exact     614/661
(92 %)
7 diff
(99.0 %id)
CD249053 embryonic stem cells, WA01, passage 38 .wf 282 to 895 23 to 636 exact AAA   614/636
(96 %)
8 diff
(98.8 %id)
CD388525 embryonic trophoblasts, made from WA01 stemcells .wf 282 to 888 23 to 629 exact AAA   607/629
(96 %)
7 diff
(98.9 %id)
DB475552 hippocampus .wf 282 to 760 1 to 479 P38Q     479/479
(100 %)
2 diff
(99.6 %id)
DB498889 hypothalamus .wf 282 to 792 1 to 512 K6N Q40H     512/512
(100 %)
4 diff
(99.3 %id)
TI_45216565   .wf 282 to 888 128 to 734 exact AAA   607/734
(82 %)
6 diff
(99.2 %id)
D23662 Fibrosarcoma .wf 283 to 888 1 to 605 exact     605/605
(100 %)
1 diff
(99.9 %id)
CD556058 embryonic trophoblasts, made from WA01 stemcells .wf 284 to 902 22 to 640 exact AAA   619/640
(96 %)
7 diff
(99.0 %id)
CB109528 Liver .wf 285 to 864 1 to 580 exact     580/580
(100 %)
0 diff
(100 %id)
BM760325 lymph node, stomach .wf 285 to 838 1 to 554 exact     554/554
(100 %)
0 diff
(100 %id)
BM841891 lymph node, stomach .wf 285 to 869 1 to 585 exact     585/585
(100 %)
0 diff
(100 %id)
BM840957 lymph node, stomach .wf 285 to 887 1 to 603 exact     603/603
(100 %)
0 diff
(100 %id)
BG942671 blood .wf 286 to 855 1 to 570 K54E     570/570
(100 %)
1 diff
(99.9 %id)
TI_154192115   .wf 286 to 897 50 to 661 exact     612/620
(98 %)
1 diff
(99.9 %id)
BP367447 thymus .wf 286 to 868 1 to 583 exact     583/583
(100 %)
1 diff
(99.9 %id)
CF130176 Chondrosarcoma Lung Metastasis cell lines, lung .wf 287 to 893 1 to 607 exact     607/607
(100 %)
0 diff
(100 %id)
BM771375 Ascites, stomach .wf 287 to 774 1 to 488 exact     488/488
(100 %)
0 diff
(100 %id)
BM706111 eye, lens .wf 288 to 749 1 to 462 exact     462/462
(100 %)
0 diff
(100 %id)
BY795291 eye .wf 292 to 870 1 to 579 exact     579/579
(100 %)
0 diff
(100 %id)
TI_59386192   .wf 292 to 897 103 to 705 exact     603/604
(99 %)
7 diff
(98.9 %id)
BG248529 adenocarcinoma cell line, colon .wf 293 to 888 1 to 594 I13M E14R I15* AAA   594/594
(100 %)
4 diff
(99.4 %id)
BQ652841 hepatocellular carcinoma, cell line, Liver .wf 293 to 897 1 to 605 exact     605/605
(100 %)
0 diff
(100 %id)
BG944784 blood .wf 294 to 786 1 to 493 exact     493/493
(100 %)
1 diff
(99.8 %id)
BC104200 PCR rescued clones .wf 294 to 714 1 to 421 exact     421/421
(100 %)
0 diff
(100 %id)
BC104201 PCR rescued clones .wf 294 to 714 1 to 421 exact     421/421
(100 %)
0 diff
(100 %id)
BG774109 choriocarcinoma, placenta .wf 294 to 743 1 to 450 exact     450/450
(100 %)
1 diff
(99.8 %id)
CB410073 maxilla, pooled .wf 294 to 787 1 to 494 exact     494/494
(100 %)
1 diff
(99.8 %id)
CB409237 maxilla, pooled .wf 294 to 880 1 to 587 exact     587/587
(100 %)
2 diff
(99.7 %id)
CB409940 maxilla, pooled .wf 294 to 875 1 to 582 exact fully sequenced,   582/582
(100 %)
6 diff
(99.0 %id)
CB409662 maxilla, pooled .wf 294 to 888 1 to 595 exact fully sequenced, AAA   595/595
(100 %)
1 diff
(99.9 %id)
CB409436 maxilla, pooled .wf 294 to 867 1 to 574 exact     574/574
(100 %)
2 diff
(99.7 %id)
BM970629 lung .wf 294 to 888 613 to 19 exact AAA   595/595
(100 %)
2 diff
(99.7 %id)
BX098235 parathyroid gland, parathyroid tumor .wf 295 to 895 1 to 601 exact AAA   601/601
(100 %)
2 diff
(99.7 %id)
BG327102 Kidney, renal cell adenocarcinoma .wf 295 to 814 1 to 520 exact     520/520
(100 %)
0 diff
(100 %id)
BM920212 pooled pancreas and spleen .wf 295 to 895 1 to 601 exact AAA   601/601
(100 %)
0 diff
(100 %id)
BQ672031 epidermoid carcinoma, cell line, salivary gland .wf 295 to 888 1 to 594 exact AAA   594/594
(100 %)
0 diff
(100 %id)
BQ672974 epidermoid carcinoma, cell line, salivary gland .wf 295 to 888 1 to 594 exact AAA   594/594
(100 %)
0 diff
(100 %id)
BG396818 eye, retinoblastoma .wf 296 to 888 1 to 593 exact AAA   593/593
(100 %)
1 diff
(99.9 %id)
BG707476 brain, hypothalamus .wf 296 to 889 1 to 594 exact AAA   594/594
(100 %)
5 diff
(99.2 %id)
BG716628 brain, hypothalamus .wf 296 to 889 1 to 594 exact AAA   594/594
(100 %)
5 diff
(99.2 %id)
BM928351 hepatocellular carcinoma, cell line, Liver .wf 296 to 897 1 to 602 exact     602/607
(99 %)
1 diff
(99.9 %id)
DB496638 hypothalamus .wf 297 to 798 1 to 502 H68D     502/502
(100 %)
4 diff
(99.3 %id)
BG768814 melanotic melanoma, high MDR (cell line), skin .wf 297 to 895 1 to 599 exact AAA   599/599
(100 %)
1 diff
(99.9 %id)
BM697034 eye, lens .wf 298 to 886 1 to 589 exact     589/622
(94 %)
1 diff
(99.9 %id)
BM848219 myeloma .wf 300 to 855 1 to 556 R80K     556/556
(100 %)
2 diff
(99.7 %id)
TI_44343063   .wf 301 to 889 141 to 729 exact     589/919
(64 %)
9 diff
(99.1 %id)
CB111378 Liver .wf 301 to 870 1 to 570 R80K     570/570
(100 %)
1 diff
(99.9 %id)
BE548741 cervical carcinoma cell line, cervix .wf 302 to 903 1 to 600 I13M E14R I15* tiling clone, AAA   600/600
(100 %)
2 diff
(99.7 %id)
BG337112 leiomyosarcoma cell line, uterus .wf 302 to 895 1 to 593 I13M E14R I15L D16T I17L ... AAA   593/593
(100 %)
2 diff
(99.7 %id)
BM555468 amelanotic melanoma, cell line, skin .wf 302 to 895 1 to 595 exact     595/603
(98 %)
2 diff
(99.7 %id)
BM915916 amelanotic melanoma, cell line, skin .wf 303 to 895 1 to 593 exact AAA   593/593
(100 %)
0 diff
(100 %id)
BQ671292 epidermoid carcinoma, cell line, salivary gland .wf 303 to 895 16 to 609 exact AAA   594/609
(97 %)
6 diff
(99.1 %id)
BU157001 melanotic melanoma, cell line, skin .wf 304 to 888 1 to 585 exact AAA   585/585
(100 %)
0 diff
(100 %id)
BQ669158 epidermoid carcinoma, cell line, salivary gland .wf 304 to 888 1 to 585 exact AAA   585/585
(100 %)
2 diff
(99.7 %id)
CN371401 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .wf 306 to 888 1 to 583 exact AAA   583/583
(100 %)
0 diff
(100 %id)
BU855692 ovary, teratocarcinoma, cell line .wf 310 to 895 1 to 587 R80X AAA   587/587
(100 %)
1 diff
(99.9 %id)
BQ056166 lymph, lymphoma, cell line .wf 311 to 895 1 to 585 exact AAA   585/585
(100 %)
0 diff
(100 %id)
BQ669837 epidermoid carcinoma, cell line, salivary gland .wf 311 to 895 1 to 585 exact AAA   585/585
(100 %)
0 diff
(100 %id)
BP432799   .wf 311 to 672 1 to 362 exact     362/362
(100 %)
0 diff
(100 %id)
BM766895 Ascites, stomach .wf 312 to 748 1 to 437 R80X     437/437
(100 %)
0 diff
(100 %id)
BM704669 eye, RPE and Choroid .wf 312 to 895 1 to 584 exact AAA   584/584
(100 %)
0 diff
(100 %id)
BE388301 endometrium, adenocarcinoma cell line, uterus .wf 313 to 833 1 to 521 K22Q     521/521
(100 %)
1 diff
(99.9 %id)
AI752473 Bone, Hip .wf 314 to 744 7 to 437 exact     431/437
(98 %)
6 diff
(98.7 %id)
BM693511 eye, Retina Foveal and Macular .wf 314 to 561 1 to 248   fully sequenced,   248/248
(100 %)
0 diff
(100 %id)
AJ715145 bone marrow .wf 315 to 802 1 to 487 exact     487/487
(100 %)
4 diff
(99.2 %id)
CN371389 embryonic stem cells, DMSO-treated H9 cellline .wf 315 to 888 1 to 574 exact     574/583
(98 %)
1 diff
(99.9 %id)
CN371393 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .wf 315 to 892 1 to 578 exact     578/578
(100 %)
0 diff
(100 %id)
CN371399 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .wf 315 to 897 1 to 583 exact     583/588
(99 %)
1 diff
(99.9 %id)
N24482 melanocyte .wf 315 to 478 1 to 162   fully sequenced,   162/162
(100 %)
1 diff
(99.4 %id)
W81003 heart .wf 315 to 622 1 to 311   fully sequenced,   311/311
(100 %)
2 diff
(99.4 %id)
BU161381 melanotic melanoma, skin .wf 315 to 897 11 to 593 exact     583/593
(98 %)
0 diff
(100 %id)
C15220   .wf 316 to 730 1 to 414 exact     414/415
(99 %)
3 diff
(99.3 %id)
BQ723403 sympathetic trunk .wf 316 to 892 1 to 577 exact     577/579
(99 %)
1 diff
(99.9 %id)
BQ221197 melanotic melanoma, skin .wf 317 to 888 1 to 572 exact AAA   572/572
(100 %)
0 diff
(100 %id)
EL952833 eyeball .wf 318 to 886 1 to 569 exact     569/569
(100 %)
5 diff
(99.2 %id)
W05498.
matches multiple genes
lung .wf 318 to 824 1 to 498 exact   also hits gene LOC100128775 498/509
(97 %)
8 diff
(98.5 %id)
BM553019 amelanotic melanoma, cell line, skin .wf 318 to 895 1 to 578 exact AAA   578/578
(100 %)
0 diff
(100 %id)
BM510204 insulinoma, Pancreas .wf 318 to 833 7 to 522 exact     516/522
(98 %)
6 diff
(98.9 %id)
BQ549184 insulinoma, Pancreas .wf 318 to 895 7 to 584 exact AAA   578/584
(98 %)
6 diff
(99.0 %id)
BU947847 insulinoma, Pancreas .wf 318 to 895 7 to 584 exact AAA   578/584
(98 %)
6 diff
(99.0 %id)
BU556876 ovary, teratocarcinoma, cell line .wf 318 to 892 1 to 575 exact     575/576
(99 %)
1 diff
(99.9 %id)
AA337516 endometrium .wf 319 to 599 1 to 281       281/281
(100 %)
0 diff
(100 %id)
BM808285 amelanotic melanoma, cell line, skin .wf 319 to 895 1 to 577 exact AAA   577/577
(100 %)
0 diff
(100 %id)
CD107026 brain, Pituitary .wf 319 to 896 1 to 578 exact     578/584
(98 %)
1 diff
(99.9 %id)
W72202.
matches multiple genes
heart .wf 320 to 888 574 to 1 T20Y D21R K22Q V23G E24G ...   also hits gene LOC100128775 574/574
(100 %)
11 diff
(98.1 %id)
BI198555 brain, neuroblastoma .wf 320 to 862 1 to 543 exact     543/544
(99 %)
3 diff
(99.5 %id)
AA187414   .wf 324 to 584 1 to 263   fully sequenced,   263/263
(100 %)
2 diff
(99.3 %id)
C14921   .wf 325 to 759 1 to 432 exact     432/432
(100 %)
3 diff
(99.4 %id)
BF038671 adenocarcinoma, ovary .wf 325 to 888 1 to 563 exact AAA   563/563
(100 %)
3 diff
(99.5 %id)
BF126026 melanotic melanoma, skin .wf 326 to 856 1 to 531 exact     531/531
(100 %)
0 diff
(100 %id)
CN371390 embryonic stem cells, DMSO-treated H9 cellline .wf 328 to 895 1 to 568 exact AAA   568/568
(100 %)
0 diff
(100 %id)
CB410068.
matches multiple genes
maxilla, pooled .wf 329 to 895 601 to 35 T55S AAA also hits gene LOC100128775 567/567
(100 %)
4 diff
(99.3 %id)
BE312007 brain, neuroblastoma .wf 334 to 895 1 to 562 exact AAA   562/562
(100 %)
0 diff
(100 %id)
BE881092 large cell carcinoma, undifferentiated, lung .wf 334 to 902 1 to 569 exact AAA   569/569
(100 %)
1 diff
(99.9 %id)
BF037916 adenocarcinoma, ovary .wf 336 to 895 1 to 562 exact AAA   562/562
(100 %)
3 diff
(99.5 %id)
BM711593 eye, human retina .wf 338 to 888 1 to 551 exact fully sequenced, AAA   551/551
(100 %)
1 diff
(99.9 %id)
AW009362 colon .wf 341 to 889 550 to 2 exact     549/550
(99 %)
0 diff
(100 %id)
BE379126 endometrium, adenocarcinoma cell line, uterus .wf 343 to 886 1 to 544 exact     544/544
(100 %)
0 diff
(100 %id)
BF038400 adenocarcinoma, ovary .wf 343 to 858 1 to 516 exact     516/516
(100 %)
2 diff
(99.7 %id)
BE878432 large cell carcinoma, undifferentiated, lung .wf 345 to 888 1 to 544 exact AAA   544/544
(100 %)
1 diff
(99.9 %id)
BM565531 insulinoma, Pancreas .wf 358 to 895 553 to 16 exact AAA   538/538
(100 %)
0 diff
(100 %id)
BP391246 pancreatic islet .wf 364 to 815 454 to 1 R25Q I26N K27Q E28G R29A ...     454/454
(100 %)
2 diff
(99.6 %id)
AV749908 Pituitary .wf 366 to 873 1 to 505 A57X V66S L67P H68S L69P ...     505/514
(98 %)
8 diff
(98.5 %id)
BM768512 stomach .wf 367 to 895 1 to 529 exact     529/529
(100 %)
0 diff
(100 %id)
BM768317 stomach .wf 367 to 893 1 to 527 exact     527/527
(100 %)
0 diff
(100 %id)
CB409939 maxilla, pooled .wf 369 to 895 561 to 35 exact fully sequenced, AAA   527/527
(100 %)
1 diff
(99.9 %id)
CB409661 maxilla, pooled .wf 369 to 888 555 to 36 L8P fully sequenced, AAA   520/520
(100 %)
1 diff
(99.9 %id)
CR407662   .wf 382 to 624 1 to 243       243/243
(100 %)
1 diff
(99.6 %id)
DB569987 hypothalamus .wf 382 to 888 1 to 508 E12G I13D E14*   Submitted on the opposite strand 508/508
(100 %)
3 diff
(99.5 %id)
AA868242 parathyroid gland, parathyroid tumor .wf 382 to 895 522 to 11 G35E I36S P38H Q39N Q40S ... AAA   512/512
(100 %)
5 diff
(99.1 %id)
AA977058 pooled germ cell tumors .wf 382 to 895 513 to 1 exact     513/513
(100 %)
5 diff
(99.1 %id)
AI150699 heart .wf 382 to 888 508 to 2 exact     507/508
(99 %)
0 diff
(100 %id)
AI148707 placenta .wf 382 to 889 524 to 17 exact AAA   508/508
(100 %)
0 diff
(100 %id)
AI192872 lung .wf 382 to 897 518 to 4 P38H Q39N Q40S Q41R R42G ...     515/518
(99 %)
1 diff
(99.9 %id)
AI310232 2 pooled tumors (clear cell type), Kidney .wf 382 to 897 517 to 2 exact     516/517
(99 %)
0 diff
(100 %id)
AI333185 lung .wf 382 to 887 506 to 1 T7A T9P T20Q D21T     506/506
(100 %)
5 diff
(99.1 %id)
AI439946 lymph node, lymphoma, follicular mixed small and largecell .wf 382 to 897 519 to 4 exact     516/519
(99 %)
0 diff
(100 %id)
AI571450 adenocarcinoma, Pancreas .wf 382 to 897 516 to 1 exact     516/516
(100 %)
0 diff
(100 %id)
AI718962 aorta .wf 382 to 895 514 to 1 exact     514/514
(100 %)
0 diff
(100 %id)
AI884649 anaplastic oligodendroglioma, brain .wf 382 to 895 514 to 1 exact     514/514
(100 %)
1 diff
(99.9 %id)
AI889333 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .wf 382 to 889 510 to 2 E31X     509/510
(99 %)
0 diff
(100 %id)
AW572481 Kidney, renal cell tumor .wf 382 to 895 524 to 11 P19X AAA   514/514
(100 %)
3 diff
(99.5 %id)
BG756801 B-cells, primary B-cells from tonsils (cell line) .wf 387 to 894 2 to 509   AAA   508/509
(99 %)
0 diff
(100 %id)
BU736752 eye, RPE and Choroid .wf 392 to 895 522 to 19   AAA   504/504
(100 %)
0 diff
(100 %id)
BG335595 choriocarcinoma, placenta .wf 396 to 895 1 to 501   AAA   501/501
(100 %)
1 diff
(99.9 %id)
DB544371 hippocampus .wf 398 to 889 1 to 492     Submitted on the opposite strand 492/492
(100 %)
2 diff
(99.6 %id)
TI_57193219   .wf 407 to 888 54 to 535   AAA   482/482
(100 %)
3 diff
(99.4 %id)
BU752056 placenta .wf 407 to 895 507 to 18   AAA   490/490
(100 %)
0 diff
(100 %id)
BI862221 breast, mammary adenocarcinoma, cell line .wf 410 to 888 1 to 479   AAA   479/479
(100 %)
3 diff
(99.4 %id)
AJ710606 heart .wf 414 to 841 1 to 428       428/428
(100 %)
0 diff
(100 %id)
CF130060 Chondrosarcoma Lung Metastasis cell lines, lung .wf 414 to 895 1 to 482   AAA   482/482
(100 %)
0 diff
(100 %id)
TI_154191977   .wf 414 to 895 40 to 521   AAA   482/482
(100 %)
0 diff
(100 %id)
BP387248 pancreatic islet .wf 416 to 902 1 to 487     Submitted on the opposite strand 487/491
(99 %)
1 diff
(99.8 %id)
DB567665 hypothalamus .wf 417 to 891 1 to 475     Submitted on the opposite strand 475/475
(100 %)
2 diff
(99.6 %id)
AA612689 colon, colon tumor RER+ .wf 417 to 887 469 to 1       469/469
(100 %)
4 diff
(99.2 %id)
BM665508 eye, human retina .wf 417 to 888 490 to 19   fully sequenced, AAA   472/472
(100 %)
0 diff
(100 %id)
AA133368 lung, lung carcinoma .wf 418 to 902 487 to 4       484/487
(99 %)
0 diff
(100 %id)
EL953336 eyeball .wf 425 to 888 1 to 464   AAA   464/464
(100 %)
0 diff
(100 %id)
H99199 melanocyte .wf 437 to 888 454 to 1   fully sequenced,   454/454
(100 %)
5 diff
(98.9 %id)
AI200714 placenta .wf 440 to 888 450 to 2       449/451
(99 %)
0 diff
(100 %id)
AI360311 anaplastic oligodendroglioma, brain .wf 440 to 897 459 to 2       458/460
(99 %)
0 diff
(100 %id)
BM988359 lung, Metastatic Chondrosarcoma .wf 440 to 894 473 to 19   AAA   455/455
(100 %)
0 diff
(100 %id)
CR745264   .wf 444 to 891 1 to 448   AAA   448/448
(100 %)
4 diff
(99.2 %id)
BM509219 insulinoma, Pancreas .wf 445 to 895 466 to 16   AAA   451/451
(100 %)
0 diff
(100 %id)
AI167394 parathyroid gland, parathyroid tumor .wf 445 to 895 464 to 14   AAA   451/454
(99 %)
1 diff
(99.8 %id)
AI306450 2 pooled tumors (clear cell type), Kidney .wf 445 to 888 447 to 4       444/447
(99 %)
0 diff
(100 %id)
AJ709832 heart .wf 448 to 888 1 to 441   AAA   441/441
(100 %)
3 diff
(99.4 %id)
AI042099 senescent fibroblast .wf 448 to 889 455 to 14   AAA   442/442
(100 %)
3 diff
(99.4 %id)
AI366502 brain, meningioma .wf 448 to 890 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
CR741166   .wf 454 to 895 1 to 442   AAA   442/442
(100 %)
0 diff
(100 %id)
AI301853 2 pooled tumors (clear cell type), Kidney .wf 457 to 888 449 to 18   AAA   432/432
(100 %)
2 diff
(99.6 %id)
AI085668 anaplastic oligodendroglioma, brain .wf 459 to 895 437 to 1       437/437
(100 %)
0 diff
(100 %id)
W93071.
matches multiple genes
liver and spleen .wf 463 to 895 434 to 1     also hits gene LOC100128775 434/434
(100 %)
6 diff
(98.7 %id)
F36177 pectoral muscle (after mastectomy) .wf 465 to 736 1 to 272       272/272
(100 %)
0 diff
(100 %id)
AA961080 carcinoid, lung .wf 470 to 895 423 to 1       423/423
(100 %)
3 diff
(99.3 %id)
AI289250 2 pooled tumors (clear cell type), Kidney .wf 478 to 897 423 to 4       420/423
(99 %)
1 diff
(99.8 %id)
AA725123 parathyroid gland, parathyroid tumor .wf 484 to 622 139 to 1       139/139
(100 %)
0 diff
(100 %id)
BU856948 adenocarcinoma, cell line, breast .wf 484 to 895 1 to 412   AAA   412/412
(100 %)
0 diff
(100 %id)
AI138609 uterus .wf 488 to 888 401 to 1       401/401
(100 %)
0 diff
(100 %id)
AA149875 colon, tumor .wf 492 to 561 1 to 67   fully sequenced,   67/67
(100 %)
0 diff
(100 %id)
AA448859   .wf 495 to 894 397 to 1       397/398
(99 %)
3 diff
(99.3 %id)
BM668841 eye, Retina Foveal and Macular .wf 500 to 888 407 to 19   fully sequenced, AAA   389/389
(100 %)
0 diff
(100 %id)
AA151956 colon, tumor .wf 510 to 895 400 to 14   fully sequenced, AAA   387/387
(100 %)
6 diff
(98.5 %id)
BQ669080 epidermoid carcinoma, cell line, salivary gland .wf 519 to 888 1 to 370   AAA   370/370
(100 %)
0 diff
(100 %id)
AA187313   .wf 554 to 889 336 to 1   fully sequenced,   336/336
(100 %)
6 diff
(98.3 %id)
AJ346542 pectoral muscle (after mastectomy) .wf 572 to 865 1 to 294       294/294
(100 %)
0 diff
(100 %id)
W81004 heart .wf 592 to 895 307 to 1   fully sequenced,   307/307
(100 %)
3 diff
(99.1 %id)
AI420560 Prostate .wf 621 to 888 268 to 1       268/268
(100 %)
0 diff
(100 %id)
BP429915   .wf 630 to 882 5 to 257       253/257
(98 %)
8 diff
(96.9 %id)
CN371398 embryonic stem cells, DMSO-treated H9 cellline .wf 641 to 897 1 to 257       257/257
(100 %)
0 diff
(100 %id)
BI828651 brain, medulla .wf 675 to 895 1 to 221   AAA   221/221
(100 %)
0 diff
(100 %id)
AI185452 lung .wf 705 to 888 184 to 1       184/184
(100 %)
0 diff
(100 %id)
EB361017 eye, lens .wf 770 to 888 141 to 23   AAA   119/119
(100 %)
0 diff
(100 %id)
EB361535 eye, lens .wf 770 to 875 106 to 1       106/106
(100 %)
0 diff
(100 %id)
CX787092 human embryonic stem cells .wg 1 to 701 1 to 700 exact tiling clone,   700/700
(100 %)
1 diff
(99.9 %id)
CN306878 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .wh 1 to 370 1 to 370 exact tiling clone,   370/370
(100 %)
1 diff
(99.8 %id)
BU185091 adenocarcinoma, Pancreas .wi 1 to 637 33 to 669 exact tiling clone,   637/1026
(62 %)
11 diff
(99.0 %id)
AV684362 hepatocellular carcinoma .wj 1 to 473 1 to 473 exact AAA   473/473
(100 %)
9 diff
(98.1 %id)
CN371397 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .wj 2 to 654 1 to 653 exact tiling clone,   653/653
(100 %)
0 diff
(100 %id)
BU958374 mixed (pool of 40 RNAs) .wj 16 to 469 1 to 454 exact     454/494
(91 %)
3 diff
(99.4 %id)
CN371400 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .wk 1 to 604 9 to 613 exact tiling clone,   605/613
(98 %)
7 diff
(98.9 %id)
AA095785   .wk 7 to 258 1 to 250 P38H Q39N Q40S Q41R R42G ...     250/260
(96 %)
5 diff
(98.1 %id)
BM795974 Ascites, stomach .wk 7 to 516 1 to 510 exact     510/510
(100 %)
2 diff
(99.7 %id)
BQ225384 melanotic melanoma, skin .wk 54 to 678 36 to 671 exact available from MGC,   636/967
(65 %)
21 diff
(97.9 %id)
BC038290 Skin, melanotic melanoma. .wk 55 to 678 1 to 624 exact tiling clone, available from MGC, AAA   624/624
(100 %)
0 diff
(100 %id)
AA311588 heart .wk 74 to 349 1 to 278 E12X E14X D16X     278/279
(99 %)
3 diff
(99.0 %id)
BC064899 Lung, large cell carcinoma .wl 1 to 1187 1 to 1187 exact tiling clone, available from MGC, AAA   1187/1187
(100 %)
0 diff
(100 %id)
BU192245 large cell carcinoma, lung .wl 2 to 806 1 to 811 exact available from MGC,   811/872
(93 %)
12 diff
(98.7 %id)
AA091135   .wl 17 to 185 1 to 171       171/175
(97 %)
23 diff
(86.9 %id)
AA295939 adipose tissue, white .wl 30 to 137 1 to 108       108/108
(100 %)
0 diff
(100 %id)
AK125214   .wl 97 to 2300 1 to 2204   tiling clone, available from FLJ,   2204/2204
(100 %)
2 diff
(100.0 %id)
DA543827   .wl 98 to 663 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AI023375 senescent fibroblast .wl 783 to 1187 410 to 6       405/410
(98 %)
0 diff
(100 %id)
AV653348 corresponding non cancerous liver tissue .wl 988 to 1357 1 to 370     Submitted on the opposite strand 370/370
(100 %)
1 diff
(99.8 %id)
BF882404 lung_tumor .wl 1090 to 1408 330 to 11   tiling clone, Submitted on the opposite strand 320/330
(96 %)
0 diff
(100 %id)
BM931929 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .wl 1394 to 1827 1 to 434   fully sequenced,   434/434
(100 %)
1 diff
(99.8 %id)
BX100932 whole brain .wl 1449 to 1830 396 to 15   AAA   382/382
(100 %)
0 diff
(100 %id)
AW514468 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .wl 1455 to 1834 382 to 3       380/382
(99 %)
0 diff
(100 %id)
AW070686 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .wl 1522 to 1949 428 to 1       428/428
(100 %)
2 diff
(99.6 %id)
BM684976 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .wl 1592 to 1830 257 to 19   fully sequenced, AAA   239/239
(100 %)
0 diff
(100 %id)
BU950004 Pancreas, Purified pancreatic islet .wm 1 to 378 1 to 378   tiling clone,   378/378
(100 %)
1 diff
(99.8 %id)
BU146490 dorsal root ganglia .wm 384 to 1276 14 to 915   tiling clone,   902/916
(98 %)
21 diff
(97.8 %id)
BU949715 Pancreas, Purified pancreatic islet .wm 554 to 885 334 to 3       332/334
(99 %)
0 diff
(100 %id)
TI_2194628997   .wm 998 to 2002 62 to 1062 exact   Submitted on the opposite strand 1001/1260
(79 %)
13 diff
(99.0 %id)
TI_2194630320   .wm 998 to 2105 63 to 1153 exact   Submitted on the opposite strand 1091/1205
(90 %)
20 diff
(98.4 %id)
BC143834 Brain, cerebral cortex, PCR rescued clones .wm 998 to 2263 1 to 1266 exact tiling clone,   1266/1266
(100 %)
1 diff
(100.0 %id)
TI_2194628618   .wm 1153 to 2268 1166 to 52 S2R R5L P6R E7T G9W ...   Submitted on the opposite strand 1115/1296
(86 %)
12 diff
(99.1 %id)
DB465449 hippocampus .wm 1331 to 1752 1 to 423       423/430
(98 %)
12 diff
(97.3 %id)
BF679587 Prostate .wm 1364 to 1809 1 to 454   available from MGC,   450/456
(98 %)
12 diff
(97.4 %id)
DB493180 hypothalamus .wm 1365 to 1796 1 to 432       432/432
(100 %)
3 diff
(99.4 %id)
DB495277 hypothalamus .wm 1365 to 1843 1 to 479       479/479
(100 %)
4 diff
(99.2 %id)
BE835500 prostate_normal .wm 1546 to 1949 8 to 411       404/411
(98 %)
7 diff
(98.3 %id)
AA310752   .wn 1 to 455 1 to 456   tiling clone,   456/456
(100 %)
3 diff
(99.4 %id)
CB994786 placenta, pre-eclamptic placenta .wn 136 to 766 28 to 663       636/835
(76 %)
15 diff
(98.3 %id)
CB961567 placenta, pre-eclamptic placenta .wn 136 to 889 28 to 788   tiling clone,   761/794
(95 %)
15 diff
(98.2 %id)
DB272870 uterus .wn 157 to 720 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BC009495 Lung, small cell carcinoma .wn 200 to 993 1 to 794   tiling clone, available from MGC, AAA   794/794
(100 %)
0 diff
(100 %id)
BE797878 lung, small cell carcinoma .wn 201 to 992 23 to 809 *60K available from MGC,   787/1013
(77 %)
18 diff
(98.3 %id)
CV382167 breast .wo 1 to 375 1 to 380   tiling clone,   380/392
(96 %)
19 diff
(95.2 %id)
BG826796 muscle, rhabdomyosarcoma .wo 119 to 754 1 to 637 exact tiling clone,   637/637
(100 %)
3 diff
(99.6 %id)
BG114447 Bone, osteosarcoma, cell line .wo 258 to 966 1 to 712 exact     712/728
(97 %)
13 diff
(98.3 %id)
AI141545 heart .wo 394 to 959 568 to 3 exact tiling clone,   566/568
(99 %)
0 diff
(100 %id)
BE168007 head_neck .wo 396 to 728 333 to 1 exact   Submitted on the opposite strand 333/333
(100 %)
0 diff
(100 %id)
DB065185 testis .wp 1 to 534 2 to 535   tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
DB452899.
matches multiple genes
testis .wp 468 to 961 1 to 495 R51K E52K D54N A77N S78F ... tiling clone, also hits gene REC8 495/496
(99 %)
11 diff
(97.8 %id)
BQ277582 mixed (pool of 40 RNAs) .wq 1 to 819 1 to 830 K78X tiling clone,   830/930
(89 %)
22 diff
(97.7 %id)
CN371395 embryonic stem cells, DMSO-treated H9 cellline .wr 1 to 650 1 to 653 exact tiling clone,   653/658
(99 %)
5 diff
(99.3 %id)
N53715.
matches multiple genes
multiple sclerosis lesions .wr 12 to 175 29 to 195     also hits gene SAV1 167/195
(85 %)
6 diff
(97.0 %id)
BF091996 testis_normal .wr 172 to 424 22 to 273       252/283
(89 %)
7 diff
(97.6 %id)
AI740556 pooled .wr 204 to 785 587 to 6 exact tiling clone,   582/587
(99 %)
0 diff
(100 %id)
DA287183 corpus callosum .ws 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
TI_57239724   .ws 17 to 767 24 to 773   tiling clone,   750/773
(97 %)
6 diff
(99.3 %id)
BI916202 brain .ws 22 to 383 1 to 362       362/362
(100 %)
3 diff
(99.2 %id)
FN079861 breast carcinoma .ws 92 to 162 1 to 71       71/71
(100 %)
2 diff
(97.2 %id)
BM043218 carcinoma, cell line, Prostate .wt 1 to 688 1 to 703 G26V D27T N28M G29A W30G ... tiling clone,   703/799
(87 %)
44 diff
(94.5 %id)
CA422888 cell lines, Chondrosarcoma .wu-u 1 to 672 687 to 19 N18K K20L L22S S23L L25F ... tiling clone, AAA   669/673
(99 %)
2 diff
(99.8 %id)
AW960243   .wv 1 to 615 1 to 616 exact tiling clone,   616/616
(100 %)
14 diff
(97.8 %id)
BQ962960 epithelioid carcinoma cell line, Pancreas .wv 25 to 651 1 to 627 exact tiling clone, AAA   627/627
(100 %)
0 diff
(100 %id)
DA381345 thalamus .ww 1 to 623 2 to 624 exact tiling clone, capped   623/623
(100 %)
0 diff
(100 %id)
R12834 whole brain .wx 1 to 312 1 to 317   tiling clone,   317/398
(79 %)
11 diff
(97.3 %id)
BF590385 pooled .wx 51 to 612 566 to 5 exact tiling clone,   562/566
(99 %)
0 diff
(100 %id)
BF108766 pooled .wx 125 to 612 492 to 5 exact     488/492
(99 %)
0 diff
(100 %id)
EC488493 Prostate .wx 132 to 232 10 to 110       101/110
(91 %)
7 diff
(93.7 %id)
EL952274 eyeball .wy-u 1 to 579 1 to 579 S70G tiling clone,   579/579
(100 %)
5 diff
(99.2 %id)
DA612239   .wz 1 to 562 2 to 563 exact tiling clone, capped   562/563
(99 %)
2 diff
(99.7 %id)
H77789 liver and spleen .xa 1 to 287 8 to 300 exact tiling clone,   293/313
(93 %)
17 diff
(94.6 %id)
BF364775 nervous_normal .xa 213 to 426 1 to 215   tiling clone,   215/217
(99 %)
5 diff
(97.7 %id)
AA335694 epididymis .xb 1 to 286 1 to 286 exact tiling clone,   286/286
(100 %)
1 diff
(99.7 %id)
BQ367768 placenta_normal .xc 1 to 268 270 to 2 E43V E44G L45I A46G Q47P ... tiling clone,   269/271
(99 %)
0 diff
(100 %id)
AW841636 colon_normal Gene NEDD8_, variant not shown              
BE062284 breast Gene NEDD8_, variant not shown              
DB305007 brain Gene NEDD8_, variant not shown              
DA221507 brain Gene NEDD8_, variant not shown       capped      
CV407150 breast Gene NEDD8_, variant not shown              
N49405 multiple sclerosis lesions Gene NEDD8_, variant not shown              
N49495 multiple sclerosis lesions Gene NEDD8_, variant not shown              
BQ448626 Knee, Osteoarthritic Cartilage Gene NEDD8_, variant not shown       AAA This clone was ignored    
475 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg, .vh, .vi, .vj-u, .vk, .vl, .vm, .vn, .vo, .vp, .vq, .vr, .vs, .vt, .vu, .vv, .vw, .vx, .vy, .vz, .wa, .wb, .wc, .wd, .we, .wf, .wg, .wh, .wi, .wj, .wk, .wl, .wm, .wn, .wo, .wp, .wq, .wr, .ws, .wt, .wu-u, .wv, .ww, .wx, .wy-u, .wz, .xa, .xb, .xc Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI