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Gene NEDD4LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
586 supporting clones for gene NEDD4L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB473368 hippocampus .a 1 to 400 1 to 399   tiling clone,   399/494
(80 %)
4 diff
(99.2 %id)
NM_001144967.1   .a 1 to 8473 1 to 8473 exact RefSeq,   8473/8473
(100 %)
0 diff
(100 %id)
DR006335 Prostate .a 213 to 960 1 to 748       748/748
(100 %)
4 diff
(99.5 %id)
TI_1948087573   .a 274 to 1171 140 to 1043       904/1461
(61 %)
39 diff
(97.4 %id)
TI_1948087735   .a 274 to 1087 137 to 950   tiling clone,   814/1427
(57 %)
20 diff
(98.6 %id)
TI_1948088087   .a 274 to 1087 133 to 949       811/1387
(58 %)
7 diff
(99.5 %id)
AY312514   .a 275 to 3202 1 to 2928   tiling clone,   2928/2928
(100 %)
2 diff
(100.0 %id)
CV030811 mixed .a 275 to 920 1 to 642       642/644
(99 %)
9 diff
(98.7 %id)
DC376664 brain .a 309 to 802 68 to 561       494/561
(88 %)
6 diff
(99.0 %id)
DC377002 brain .a 315 to 800 84 to 569       486/573
(84 %)
8 diff
(98.7 %id)
DA698104   .a 320 to 859 20 to 559   capped   540/558
(96 %)
7 diff
(98.8 %id)
AY243320 lung .a 321 to 591 216 to 486       271/486
(55 %)
6 diff
(98.8 %id)
DC348039 tongue, tumor tissue .a 322 to 741 137 to 556       420/540
(77 %)
7 diff
(98.8 %id)
DC376936 brain .a 323 to 787 86 to 550       465/553
(84 %)
8 diff
(98.6 %id)
DC377093 brain .a 323 to 789 86 to 552       467/552
(84 %)
6 diff
(99.0 %id)
DR002211 fetal brain .a 340 to 1071 2 to 735       734/737
(99 %)
7 diff
(99.1 %id)
CN314396 embryonic stem cells, cell lines H1, H7, andH9 .a 386 to 883 45 to 542       498/542
(91 %)
10 diff
(98.2 %id)
BG476976 melanotic melanoma, skin .a 574 to 1120 1 to 574       574/694
(82 %)
37 diff
(94.7 %id)
CN314401 embryonic stem cells, DMSO-treated H9 cellline .a 577 to 1000 1 to 425       425/425
(100 %)
1 diff
(99.8 %id)
BE275776 melanotic melanoma, skin .a 594 to 1179 1 to 583   available from MGC,   583/584
(99 %)
4 diff
(99.4 %id)
BE391640 endometrium, adenocarcinoma cell line, uterus .a 613 to 1134 66 to 588   available from MGC,   523/588
(88 %)
1 diff
(99.9 %id)
CN314400 embryonic stem cells, cell lines H1, H7, andH9 .a 641 to 1153 1 to 514       514/514
(100 %)
1 diff
(99.9 %id)
DA033772   .a 656 to 1230 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BG468573 adenocarcinoma cell line, colon .a 680 to 1542 1 to 858       858/858
(100 %)
19 diff
(97.8 %id)
DA723953   .a 715 to 960 2 to 248   capped   247/250
(98 %)
4 diff
(98.4 %id)
DA233323 brain .a 719 to 1288 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA804923 brain .a 749 to 1277 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
BP270109 small intestine .a 901 to 1480 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BI049817 placenta_normal .a 922 to 1229 317 to 11       307/317
(96 %)
1 diff
(99.7 %id)
BF772767 epid_tumor .a 927 to 1491 1 to 564       564/564
(100 %)
6 diff
(99.0 %id)
BX370160 Placenta Cot 25-normalized .a 960 to 1268 13 to 325       313/422
(74 %)
17 diff
(96.0 %id)
CV376522 testis_normal .a 1111 to 1325 216 to 2     Submitted on the opposite strand 215/216
(99 %)
14 diff
(93.6 %id)
DC310841 cerebellum .a 1208 to 1787 1 to 580       580/580
(100 %)
0 diff
(100 %id)
EC496660 Prostate .a 1267 to 1356 92 to 5       88/94
(93 %)
1 diff
(99.0 %id)
BG540865 lung .a 1313 to 1927 1 to 611       611/920
(66 %)
12 diff
(98.7 %id)
BP333150 salivary gland .a 1361 to 1938 1 to 578       578/578
(100 %)
0 diff
(100 %id)
BX490418   .a 1418 to 2032 1 to 615       615/615
(100 %)
3 diff
(99.6 %id)
DA803839 brain .a 1454 to 1997 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BG527782 lung, mucoepidermoid carcinoma .a 1463 to 2149 1 to 687       687/687
(100 %)
2 diff
(99.8 %id)
BX486688   .a 1486 to 2182 1 to 697       697/697
(100 %)
1 diff
(99.9 %id)
BP283351 bone marrow .a 1487 to 2068 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
DA188888 amygdala .a 1500 to 2057 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BG769727 melanotic melanoma, high MDR (cell line), skin .a 1503 to 2403 1 to 915       873/918
(95 %)
24 diff
(97.4 %id)
DA186455 amygdala .a 1511 to 2068 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA376798 thalamus .a 1522 to 1869 2 to 349   capped   348/348
(100 %)
0 diff
(100 %id)
BF690597 melanotic melanoma, high MDR, skin .a 1522 to 2157 1 to 636       636/915
(69 %)
16 diff
(98.3 %id)
AW363240 colon .a 1534 to 1908 13 to 395       383/428
(89 %)
30 diff
(93.0 %id)
BQ223500 large cell carcinoma, lung .a 1551 to 2181 12 to 647       636/761
(83 %)
21 diff
(97.3 %id)
BF978511 melanotic melanoma, high MDR, skin .a 1565 to 2284 1 to 722       722/848
(85 %)
15 diff
(98.3 %id)
BG496356 lung, mucoepidermoid carcinoma .a 1570 to 2444 1 to 881       879/881
(99 %)
22 diff
(97.6 %id)
BF976829 melanotic melanoma, high MDR, skin .a 1613 to 2334 1 to 726       727/858
(84 %)
46 diff
(94.7 %id)
BF697220 brain, primitive neuroectoderm .a 1621 to 2223 1 to 605       605/858
(70 %)
15 diff
(98.3 %id)
BI862468 breast, mammary adenocarcinoma, cell line .a 1651 to 2391 28 to 767       740/767
(96 %)
9 diff
(98.9 %id)
TI_57193343   .a 1651 to 2391 83 to 822       740/767
(96 %)
9 diff
(98.9 %id)
BE961080 melanotic melanoma, high MDR, skin .a 1677 to 2114 1 to 438       438/607
(72 %)
15 diff
(97.6 %id)
AI424022 brain, glioblastoma (pooled) .a 1715 to 1829 115 to 1       115/115
(100 %)
7 diff
(94.0 %id)
BF979184 melanotic melanoma, high MDR, skin .a 1745 to 2429 1 to 680       680/914
(74 %)
11 diff
(98.8 %id)
AU119079 whole embryo, mainly head .a 1748 to 2525 2 to 780   capped   779/779
(100 %)
7 diff
(99.2 %id)
BF350618 head_neck .a 1751 to 1958 1 to 206       206/208
(99 %)
7 diff
(96.7 %id)
BI051922 placenta_normal .a 1753 to 2175 1 to 422       422/422
(100 %)
1 diff
(99.8 %id)
DA507391 brain .a 1767 to 2316 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
AW860568 colon .a 1780 to 2111 14 to 344       331/344
(96 %)
7 diff
(98.0 %id)
AA838301 colon, colon tumor .a 1812 to 2088 1 to 277       277/277
(100 %)
0 diff
(100 %id)
DA770969 brain .a 1828 to 2411 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA121210 cerebellum .a 1849 to 2387 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA021698   .a 1859 to 2438 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA754970   .a 1865 to 2399 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
CN314397 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1992 to 2527 1 to 536       536/536
(100 %)
0 diff
(100 %id)
BF573210 melanotic melanoma, high MDR, skin .a 2045 to 2622 1 to 573       573/872
(65 %)
6 diff
(99.4 %id)
CB152874 Liver .a 2062 to 2604 1 to 543       543/543
(100 %)
0 diff
(100 %id)
AA469388   .a 2068 to 2431 1 to 364       364/364
(100 %)
8 diff
(97.9 %id)
AA579307   .a 2068 to 2370 1 to 303       303/304
(99 %)
7 diff
(97.7 %id)
BP316994 pericardium .a 2068 to 2650 1 to 582       582/583
(99 %)
11 diff
(98.2 %id)
DA792115 brain .a 2088 to 2642 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
CB149311 Liver .a 2098 to 2724 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
BX362375   .a 2108 to 2864 1 to 757       757/757
(100 %)
60 diff
(92.1 %id)
BQ220579 embryonal carcinoma, cell line, testis .a 2132 to 2930 1 to 804       804/864
(93 %)
15 diff
(98.3 %id)
BE799929 lung, small cell carcinoma .a 2144 to 2802 1 to 674       674/952
(70 %)
34 diff
(96.5 %id)
DA781196 brain .a 2170 to 2651 2 to 484   capped   483/483
(100 %)
1 diff
(99.8 %id)
FN116732 breast carcinoma .a 2197 to 2297 1 to 103       103/103
(100 %)
3 diff
(97.1 %id)
BG122589 adenocarcinoma, cell line, Liver .a 2198 to 2829 1 to 632       632/878
(71 %)
13 diff
(98.6 %id)
CF140426 CNCAP(3)T-225 cell line, Prostate .a 2230 to 2541 8 to 320       313/320
(97 %)
12 diff
(96.3 %id)
T63391 lung .a 2236 to 2338 1 to 103       103/109
(94 %)
2 diff
(98.2 %id)
BM694251 eye, RPE and Choroid .a 2265 to 2726 1 to 462     Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 462/462
(100 %)
0 diff
(100 %id)
BP256830 Kidney .a 2277 to 2858 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BF748562 breast_normal .a 2278 to 2650 34 to 402       369/404
(91 %)
10 diff
(97.6 %id)
AA469387   .a 2279 to 2626 380 to 33       347/380
(91 %)
0 diff
(100 %id)
CB148891 Liver .a 2281 to 2696 1 to 416       416/416
(100 %)
2 diff
(99.6 %id)
BG251196 adenocarcinoma, cell line, Liver .a 2294 to 3101 1 to 794       796/966
(82 %)
30 diff
(96.9 %id)
BF689445 melanotic melanoma, high MDR (cell line), skin .a 2296 to 2878 1 to 579   fully sequenced,   579/579
(100 %)
2 diff
(99.7 %id)
TI_1948087574   .a 2336 to 3197 858 to 1       859/1188
(72 %)
33 diff
(97.3 %id)
BE077637 breast .a 2363 to 2739 25 to 402       378/402
(94 %)
10 diff
(97.6 %id)
DA500284 brain .a 2398 to 2971 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BX282031 melanotic melanoma, skin .a 2426 to 2918 1 to 493       493/493
(100 %)
0 diff
(100 %id)
BQ215431 melanotic melanoma, skin .a 2428 to 3266 1 to 844       844/845
(99 %)
9 diff
(99.0 %id)
DA505908 brain .a 2440 to 2985 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
BE708370 head_neck .a 2442 to 2706 284 to 19       266/284
(93 %)
1 diff
(99.7 %id)
DA513862 brain .a 2482 to 3033 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
BE091676 breast .a 2494 to 2815 1 to 322       322/322
(100 %)
3 diff
(99.1 %id)
BG761215 melanotic melanoma, high MDR (cell line), skin .a 2508 to 3443 1 to 948       948/970
(97 %)
29 diff
(97.1 %id)
TI_1948087736   .a 2524 to 3205 810 to 127       684/1365
(50 %)
13 diff
(99.1 %id)
TI_1948088088   .a 2524 to 3205 811 to 126       686/1354
(50 %)
12 diff
(99.2 %id)
AA341248 Kidney .a 2577 to 2882 9 to 314       306/314
(97 %)
6 diff
(98.1 %id)
BG546670 lung .a 2581 to 3088 1 to 507       507/507
(100 %)
1 diff
(99.9 %id)
H06012 whole brain .a 2587 to 2884 1 to 298     Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 298/298
(100 %)
0 diff
(100 %id)
BE391083 endometrium, adenocarcinoma cell line, uterus .a 2615 to 3185 1 to 571       571/572
(99 %)
1 diff
(99.9 %id)
BE390022 endometrium, adenocarcinoma cell line, uterus .a 2616 to 3225 1 to 609       609/611
(99 %)
4 diff
(99.4 %id)
DA510755 brain .a 2620 to 3189 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
R19498 whole brain .a 2645 to 3018 1 to 374       374/374
(100 %)
2 diff
(99.5 %id)
TI_149309079   .a 2646 to 3508 937 to 85   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 853/970
(87 %)
15 diff
(98.5 %id)
BG534244 lung .a 2663 to 3320 1 to 666       666/666
(100 %)
34 diff
(94.9 %id)
T74302 whole brain .a 2665 to 3187 1 to 526       524/528
(99 %)
9 diff
(98.3 %id)
BE792440 lung, small cell carcinoma .a 2673 to 3370 1 to 697   tiling clone,   697/697
(100 %)
2 diff
(99.8 %id)
R07229 liver and spleen .a 2676 to 3023 1 to 365       365/382
(95 %)
17 diff
(95.6 %id)
W87678 liver and spleen .a 2676 to 3146 1 to 479       477/479
(99 %)
8 diff
(98.4 %id)
BM853023 Ascites, stomach .a 2701 to 3226 1 to 525       525/525
(100 %)
5 diff
(99.1 %id)
BX330935   .a 2706 to 3484 783 to 1       783/783
(100 %)
31 diff
(96.1 %id)
DA796647 brain .a 2715 to 3280 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BX327480   .a 2730 to 3507 1 to 777       777/778
(99 %)
5 diff
(99.4 %id)
TI_159719850   .a 2736 to 3521 915 to 132       784/1084
(72 %)
22 diff
(98.0 %id)
TI_158432766   .a 2753 to 3507 838 to 86   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 753/917
(82 %)
17 diff
(98.2 %id)
TI_157599955   .a 2762 to 3507 832 to 88   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 745/791
(94 %)
6 diff
(99.3 %id)
DA172946 amygdala .a 2793 to 3365 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA786348 brain .a 2793 to 3370 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
CB108717 Liver .a 2794 to 3281 1 to 488       488/488
(100 %)
0 diff
(100 %id)
TI_154099689   .a 2797 to 3513 783 to 63   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 721/722
(99 %)
10 diff
(98.7 %id)
AI810999 Prostate .a 2798 to 2894 97 to 1       97/97
(100 %)
2 diff
(98.0 %id)
BM999213 lung, Lung Focal Fibrosis .a 2804 to 3428 19 to 637     Submitted on the opposite strand 619/623
(99 %)
9 diff
(98.6 %id)
BU687509 lung .a 2804 to 3508 724 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 706/706
(100 %)
1 diff
(99.9 %id)
TI_149276618   .a 2820 to 3515 786 to 91   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 696/893
(77 %)
2 diff
(99.8 %id)
BU677301 lung, Primary Lung Epithelial Cells .a 2844 to 3515 688 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 672/672
(100 %)
1 diff
(99.9 %id)
BF690387 melanotic melanoma, high MDR (cell line), skin .a 2848 to 3592 746 to 1   fully sequenced,   746/746
(100 %)
13 diff
(98.3 %id)
AA443004 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2853 to 3288 1 to 436   fully sequenced,   436/436
(100 %)
2 diff
(99.6 %id)
BM714998 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2876 to 3506 1 to 631   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 631/631
(100 %)
0 diff
(100 %id)
AA621164 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2879 to 3509 640 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 630/630
(100 %)
13 diff
(98.0 %id)
CA441150 Fibrosarcoma .a 2906 to 3513 628 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 610/610
(100 %)
2 diff
(99.7 %id)
CF529208 placenta .a 2909 to 3507 617 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 599/599
(100 %)
0 diff
(100 %id)
TI_149307514   .a 2928 to 3506 667 to 91   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 577/962
(59 %)
16 diff
(98.4 %id)
AW873034 adrenal gland, neuroblastoma .a 2931 to 3517 587 to 1       587/591
(99 %)
2 diff
(99.7 %id)
CF528594 placenta .a 2937 to 3507 588 to 18   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 571/571
(100 %)
0 diff
(100 %id)
BQ008198 Chondrosarcoma, Left Pubic Bone .a 2940 to 3635 709 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 691/695
(99 %)
5 diff
(99.3 %id)
AA778109 heart .a 2968 to 3507 551 to 13   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 539/539
(100 %)
12 diff
(97.8 %id)
CB113084 Liver .a 2977 to 3234 1 to 258       258/258
(100 %)
3 diff
(98.9 %id)
AW952846   .a 2986 to 3508 524 to 1     Submitted on the opposite strand 524/524
(100 %)
3 diff
(99.5 %id)
BP239924 Liver .a 3006 to 3620 1 to 615       615/615
(100 %)
7 diff
(98.9 %id)
BG122854 adenocarcinoma, cell line, Liver .a 3017 to 3659 1 to 644       644/946
(68 %)
10 diff
(99.0 %id)
AA278729 germinal center B cell .a 3033 to 3446 414 to 1       414/415
(99 %)
4 diff
(99.1 %id)
DB542138 hippocampus .a 3039 to 3515 1 to 477     Submitted on the opposite strand 477/477
(100 %)
1 diff
(99.8 %id)
AW471484 colon, moderately-differentiated adenocarcinoma .a 3039 to 3509 471 to 1       471/472
(99 %)
0 diff
(100 %id)
BU733122 eye, RPE and Choroid .a 3041 to 3509 487 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 469/469
(100 %)
1 diff
(99.8 %id)
BM719578 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3047 to 3517 1 to 471   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 471/471
(100 %)
1 diff
(99.8 %id)
BM931700 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3047 to 3515 1 to 469   fully sequenced, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 469/469
(100 %)
0 diff
(100 %id)
BP256666 Kidney .a 3056 to 3638 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BM676699 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3069 to 3506 457 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 439/439
(100 %)
1 diff
(99.8 %id)
AA610291 breast .a 3077 to 3506 433 to 4       430/433
(99 %)
0 diff
(100 %id)
BU558238 adenocarcinoma, cell line, breast .a 3078 to 3506 1 to 430   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 430/430
(100 %)
5 diff
(98.9 %id)
EC536489 Prostate .a 3083 to 3184 1 to 101       101/101
(100 %)
3 diff
(97.1 %id)
EC520451 Prostate .a 3085 to 3184 1 to 97       97/97
(100 %)
3 diff
(97.0 %id)
C75504   .a 3097 to 3511 413 to 4       410/414
(99 %)
0 diff
(100 %id)
AU145505 whole embryo, mainly head .a 3097 to 3635 534 to 1       534/581
(91 %)
8 diff
(98.7 %id)
AW352301 head_neck .a 3099 to 3417 21 to 337       317/337
(94 %)
6 diff
(98.3 %id)
AW352302 head_neck .a 3099 to 3417 317 to 1       317/320
(99 %)
2 diff
(99.4 %id)
BF349410 head_neck .a 3099 to 3403 315 to 12       304/318
(95 %)
0 diff
(100 %id)
AA530951 normal prostatic epithelial cells, Prostate .a 3099 to 3401 307 to 1       307/311
(98 %)
11 diff
(96.5 %id)
DB537317 hippocampus .a 3100 to 3515 1 to 416     Submitted on the opposite strand 416/416
(100 %)
3 diff
(99.3 %id)
AI357376 brain, glioblastoma (pooled) .a 3100 to 3506 418 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 408/691
(59 %)
13 diff
(98.2 %id)
AW386064 pnet .a 3103 to 3252 1 to 150       150/150
(100 %)
3 diff
(98.0 %id)
BE928585 denis_drash .a 3103 to 3252 1 to 150       150/150
(100 %)
3 diff
(98.0 %id)
AI240561 liver and spleen .a 3104 to 3511 410 to 3       408/410
(99 %)
0 diff
(100 %id)
AA743916 Kidney .a 3113 to 3629 517 to 1       517/517
(100 %)
5 diff
(99.1 %id)
AI383935 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3114 to 3509 406 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AI805240 Prostate .a 3114 to 3515 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AW235527 Kidney .a 3114 to 3518 408 to 4       405/408
(99 %)
0 diff
(100 %id)
BF740124 brain, glioblastoma (pooled) .a 3114 to 3506 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
AI950165 anaplastic oligodendroglioma, brain .a 3116 to 3511 414 to 19       396/414
(95 %)
0 diff
(100 %id)
BF349406 head_neck .a 3119 to 3417 1 to 297       297/297
(100 %)
2 diff
(99.4 %id)
BP260852 small intestine .a 3130 to 3704 1 to 575   tiling clone,   575/575
(100 %)
2 diff
(99.7 %id)
BG399173 Kidney .a 3132 to 3657 1 to 525       525/805
(65 %)
4 diff
(99.6 %id)
AI377528 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3133 to 3517 385 to 1       385/385
(100 %)
0 diff
(100 %id)
BM998044 lung, Metastatic Chondrosarcoma .a 3139 to 3635 515 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 497/497
(100 %)
0 diff
(100 %id)
AI202695 Prostate .a 3140 to 3629 490 to 1       490/490
(100 %)
0 diff
(100 %id)
EC555523 Prostate .a 3155 to 3256 1 to 101       101/105
(96 %)
3 diff
(97.2 %id)
W87762 liver and spleen .a 3163 to 3506 344 to 1       344/345
(99 %)
5 diff
(98.6 %id)
CN314398 embryonic stem cells, DMSO-treated H9 cellline .a 3165 to 3515 1 to 351   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 351/351
(100 %)
4 diff
(98.9 %id)
BE275030 melanotic melanoma, skin .a 3169 to 3511 1 to 343       343/345
(99 %)
1 diff
(99.8 %id)
AI868734 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3170 to 3509 340 to 1       340/340
(100 %)
0 diff
(100 %id)
C15964   .a 3171 to 3471 1 to 300       300/300
(100 %)
2 diff
(99.4 %id)
AI670111 Prostate .a 3177 to 3639 465 to 3       463/465
(99 %)
0 diff
(100 %id)
R07177 liver and spleen .a 3180 to 3507 335 to 4       332/337
(98 %)
0 diff
(100 %id)
BF589563 Prostate .a 3186 to 3635 452 to 3       450/452
(99 %)
0 diff
(100 %id)
TI_57242470   .a 3191 to 3660 24 to 493       470/827
(56 %)
4 diff
(99.6 %id)
AA443082   .a 3195 to 3587 1 to 392       392/392
(100 %)
1 diff
(99.8 %id)
BI917877 brain .a 3196 to 3660 1 to 465       465/799
(58 %)
4 diff
(99.5 %id)
BQ679080 melanotic melanoma, cell line, skin .a 3197 to 3509 1 to 313   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 313/313
(100 %)
0 diff
(100 %id)
AA737673 germinal center B cell .a 3213 to 3639 430 to 5       426/430
(99 %)
0 diff
(100 %id)
AA825696 germinal center B cell .a 3236 to 3639 408 to 5       404/408
(99 %)
0 diff
(100 %id)
AI826248 normal prostate, Prostate .a 3238 to 3629 415 to 24   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 392/392
(100 %)
1 diff
(99.8 %id)
AA564169 normal prostate, Prostate .a 3251 to 3510 258 to 1       258/258
(100 %)
2 diff
(99.3 %id)
AA463445 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3258 to 3519 260 to 1   fully sequenced,   260/260
(100 %)
7 diff
(97.4 %id)
BM675510 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3292 to 3515 242 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 224/224
(100 %)
0 diff
(100 %id)
AI961598 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3293 to 3636 343 to 1       343/343
(100 %)
1 diff
(99.8 %id)
BM682883 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3293 to 3515 242 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 224/224
(100 %)
1 diff
(99.6 %id)
AI434837 Kidney .a 3298 to 3637 341 to 1       341/341
(100 %)
3 diff
(99.2 %id)
BG272030 normal head/neck tissue .a 3308 to 3505 261 to 64   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 198/223
(88 %)
0 diff
(100 %id)
BU072968 insulinoma, Pancreas .a 3312 to 3839 3 to 529   fully sequenced,   527/529
(99 %)
6 diff
(98.9 %id)
AA705020 liver and spleen .a 3326 to 3506 181 to 2       180/181
(99 %)
0 diff
(100 %id)
T63535 lung .a 3340 to 3465 129 to 3       127/129
(98 %)
0 diff
(100 %id)
BE327823 malignant melanoma, metastatic to lymphnode, skin .a 3343 to 3509 181 to 13   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 169/170
(99 %)
5 diff
(97.1 %id)
AW992108 breast_normal .a 3354 to 3575 1 to 222       222/222
(100 %)
2 diff
(99.1 %id)
BF816627 colon_ins .a 3374 to 3923 553 to 6     Submitted on the opposite strand 548/553
(99 %)
37 diff
(93.4 %id)
AV727203 hypothalamus .a 3386 to 4044 1 to 661       661/661
(100 %)
14 diff
(97.9 %id)
EC446361 Prostate .a 3399 to 3506 118 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 108/108
(100 %)
3 diff
(97.3 %id)
T25138   .a 3403 to 3507 107 to 4       104/107
(97 %)
0 diff
(100 %id)
DA082744 cerebellum .a 3403 to 3978 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
H05963 whole brain .a 3410 to 3635 246 to 21   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 226/226
(100 %)
2 diff
(99.2 %id)
EC577811 Prostate .a 3412 to 3515 102 to 1       102/102
(100 %)
2 diff
(98.1 %id)
BG055218 Prostate .a 3425 to 3639 219 to 5       215/219
(98 %)
0 diff
(100 %id)
AW630620 2 pooled high-grade transitional celltumors, genitourinary tract .a 3437 to 3864 1 to 429       429/429
(100 %)
1 diff
(99.8 %id)
EC527519 Prostate .a 3450 to 3506 1 to 58       58/59
(98 %)
3 diff
(95.0 %id)
AF070601 brain .a 3468 to 5090 1 to 1624   tiling clone, AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 1624/1624
(100 %)
3 diff
(99.9 %id)
EC553758 Prostate .a 3469 to 3569 96 to 1       96/101
(95 %)
7 diff
(93.1 %id)
BQ000605 Fibrosarcoma .a 3530 to 4337 819 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 801/804
(99 %)
8 diff
(99.1 %id)
AA902439 carcinoid, lung .a 3659 to 4075 1 to 417     Submitted on the opposite strand 417/417
(100 %)
1 diff
(99.8 %id)
T82420 lung .a 3660 to 3892 1 to 236       236/236
(100 %)
3 diff
(98.8 %id)
AI700448 pooled .a 3660 to 4179 1 to 521     Submitted on the opposite strand 521/521
(100 %)
4 diff
(99.3 %id)
DA416288 thalamus .a 3667 to 4199 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
AI247502 liver and spleen .a 3682 to 4031 1 to 350     Submitted on the opposite strand 350/350
(100 %)
1 diff
(99.8 %id)
H54325 liver and spleen .a 3711 to 4081 1 to 372     Submitted on the opposite strand 372/377
(98 %)
2 diff
(99.5 %id)
AI222939 carcinoid, lung .a 3714 to 4139 1 to 426     Submitted on the opposite strand 426/426
(100 %)
1 diff
(99.8 %id)
BU070956 insulinoma, Pancreas .a 3809 to 4327 547 to 30   fully sequenced, AAA   518/529
(97 %)
5 diff
(99.1 %id)
CA312089 Human Lung Epithelial cells, lung .a 3818 to 4494 695 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 677/677
(100 %)
0 diff
(100 %id)
CB120066 Liver .a 3819 to 4267 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
DB560788 hypothalamus .a 3881 to 4337 1 to 457     Submitted on the opposite strand 457/457
(100 %)
8 diff
(98.3 %id)
U57844 eye .a 3886 to 4645 1 to 762       762/762
(100 %)
3 diff
(99.7 %id)
R52394 whole brain .a 3886 to 4275 1 to 392       392/392
(100 %)
4 diff
(99.0 %id)
BF207897 bladder, carcinoma, cell line .a 3904 to 4619 1 to 708       708/708
(100 %)
26 diff
(96.4 %id)
TI_149283582   .a 3906 to 4584 774 to 96   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 679/679
(100 %)
2 diff
(99.8 %id)
BU680215 lung, Primary Lung Epithelial Cells .a 3927 to 4584 674 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 658/658
(100 %)
0 diff
(100 %id)
DA800863 brain .a 4008 to 4501 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
EC565798 Prostate .a 4015 to 4122 9 to 116       108/116
(93 %)
0 diff
(100 %id)
AV749561 Pituitary .a 4072 to 4612 1 to 540       540/547
(98 %)
19 diff
(96.6 %id)
BM930532 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4078 to 4590 520 to 8     Submitted on the opposite strand 513/523
(98 %)
0 diff
(100 %id)
TI_151761684   .a 4078 to 4596 61 to 580     Submitted on the opposite strand 520/982
(52 %)
6 diff
(99.4 %id)
FN073799 breast carcinoma .a 4153 to 4205 53 to 1     Submitted on the opposite strand 53/54
(98 %)
0 diff
(100 %id)
AL533812 brain, fetal brain .a 4164 to 5090 1 to 927   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 927/927
(100 %)
2 diff
(99.8 %id)
D12450 Liver .a 4177 to 4330 12 to 165       154/165
(93 %)
6 diff
(96.4 %id)
AA234837 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4188 to 4593 1 to 406       406/406
(100 %)
0 diff
(100 %id)
FN132570 breast carcinoma .a 4207 to 4290 1 to 85       85/85
(100 %)
5 diff
(94.2 %id)
R43846 whole brain .a 4210 to 4407 207 to 10       198/207
(95 %)
0 diff
(100 %id)
TI_154100690   .a 4259 to 5090 913 to 84   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 830/830
(100 %)
14 diff
(98.4 %id)
T87668 liver and spleen .a 4299 to 4494 1 to 200       200/200
(100 %)
4 diff
(98.0 %id)
W02425 liver and spleen .a 4299 to 4841 1 to 544   fully sequenced,   544/544
(100 %)
5 diff
(99.1 %id)
AA203683 liver and spleen .a 4299 to 4929 1 to 621       621/625
(99 %)
14 diff
(97.8 %id)
BU608769 Human Lung Epithelial cells, lung .a 4301 to 5108 806 to 1       806/806
(100 %)
2 diff
(99.8 %id)
BU861297 mixed (pool of 40 RNAs) .a 4317 to 5055 1 to 750   AAA   750/793
(94 %)
15 diff
(98.2 %id)
BG282803 adenocarcinoma, cell line, Prostate .a 4323 to 5107 1 to 775       775/977
(79 %)
20 diff
(98.0 %id)
AA329323   .a 4326 to 4643 1 to 319       319/319
(100 %)
1 diff
(99.7 %id)
AW958128   .a 4327 to 4644 1 to 318       318/476
(66 %)
1 diff
(99.8 %id)
BQ019007 lung, Metastatic Chondrosarcoma .a 4338 to 5108 770 to 1       770/770
(100 %)
1 diff
(99.9 %id)
DA400526 thalamus .a 4357 to 4902 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
AA011264 liver and spleen .a 4381 to 4726 10 to 361   fully sequenced,   352/361
(97 %)
6 diff
(98.4 %id)
BE172039 head_neck .a 4406 to 4725 325 to 7     Submitted on the opposite strand 319/408
(78 %)
0 diff
(100 %id)
N28958 melanocyte .a 4408 to 4811 1 to 408       408/502
(81 %)
11 diff
(97.9 %id)
FN080889 breast carcinoma .a 4420 to 4521 105 to 1     Submitted on the opposite strand 105/105
(100 %)
5 diff
(95.3 %id)
AA025995 heart .a 4450 to 4814 1 to 370   fully sequenced,   370/370
(100 %)
6 diff
(98.4 %id)
W27827 eye, retina .a 4453 to 4954 20 to 526       507/572
(88 %)
14 diff
(97.6 %id)
BF678730 Prostate .a 4477 to 5112 1 to 635       635/749
(84 %)
14 diff
(98.2 %id)
CA441492 Fibrosarcoma .a 4492 to 5108 617 to 1       617/617
(100 %)
0 diff
(100 %id)
AA026694 heart .a 4497 to 4726 1 to 231   fully sequenced,   231/231
(100 %)
0 diff
(100 %id)
CB163112 Liver .a 4513 to 5082 570 to 1     Submitted on the opposite strand 570/570
(100 %)
0 diff
(100 %id)
T70131 lung .a 4519 to 4949 1 to 439       439/443
(99 %)
15 diff
(96.7 %id)
BF001583 colon, colon tumor, RER+ .a 4532 to 5092 561 to 1       561/561
(100 %)
2 diff
(99.7 %id)
AW195564 pooled .a 4543 to 5091 549 to 1       549/549
(100 %)
0 diff
(100 %id)
AI927330 Kidney .a 4545 to 5090 547 to 1       547/547
(100 %)
7 diff
(98.8 %id)
DB310057.
matches multiple genes
hippocampus .a 4551 to 5090 540 to 1     also hits gene foger 540/540
(100 %)
1 diff
(99.9 %id)
AI470245 pooled .a 4551 to 5089 534 to 1       534/535
(99 %)
19 diff
(96.5 %id)
AI193021 lung .a 4561 to 5089 529 to 1       529/532
(99 %)
0 diff
(100 %id)
BM931496 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4562 to 4831 1 to 270       270/271
(99 %)
1 diff
(99.7 %id)
AW006880 Kidney .a 4574 to 5090 518 to 1       518/518
(100 %)
1 diff
(99.9 %id)
AW466909 2 pooled tumors (clear cell type), Kidney .a 4575 to 5059 485 to 1       485/485
(100 %)
4 diff
(99.2 %id)
H54115 liver and spleen .a 4579 to 5024 453 to 1     Submitted on the opposite strand 453/455
(99 %)
23 diff
(95.0 %id)
AI261929 Kidney .a 4631 to 5092 462 to 1       462/462
(100 %)
0 diff
(100 %id)
AI830864 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 4631 to 5103 474 to 1       474/474
(100 %)
3 diff
(99.4 %id)
BF431697 Kidney .a 4632 to 5093 462 to 1       462/462
(100 %)
8 diff
(98.3 %id)
AI141446 heart .a 4634 to 5091 458 to 1       458/458
(100 %)
0 diff
(100 %id)
BE857409 brain, glioblastoma (pooled) .a 4641 to 5086 446 to 1       446/446
(100 %)
2 diff
(99.6 %id)
AA680108 liver and spleen .a 4643 to 5090 449 to 1       449/449
(100 %)
5 diff
(98.9 %id)
DA121096 cerebellum .a 4647 to 5092 2 to 447   capped   446/446
(100 %)
0 diff
(100 %id)
AI248492 liver and spleen .a 4653 to 5092 440 to 1       440/440
(100 %)
0 diff
(100 %id)
AW295781   .a 4682 to 5107 426 to 1       426/436
(97 %)
3 diff
(99.4 %id)
BM716759 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4687 to 5090 1 to 404   fully sequenced, AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 404/404
(100 %)
0 diff
(100 %id)
AI635710 Kidney .a 4692 to 5090 397 to 1       397/397
(100 %)
4 diff
(99.0 %id)
AW299645 Kidney .a 4694 to 5102 409 to 1       409/409
(100 %)
3 diff
(99.3 %id)
AA026600 heart .a 4696 to 5091 395 to 1   fully sequenced,   395/395
(100 %)
6 diff
(98.5 %id)
AA723458 heart .a 4701 to 5109 409 to 1       409/412
(99 %)
7 diff
(98.4 %id)
AA011345 liver and spleen .a 4711 to 5090 385 to 1   fully sequenced,   385/385
(100 %)
7 diff
(98.2 %id)
AI610777 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 4713 to 5111 399 to 1       399/399
(100 %)
2 diff
(99.5 %id)
AW613877 2 pooled high-grade transitional celltumors, genitourinary tract .a 4715 to 5091 377 to 1       377/377
(100 %)
0 diff
(100 %id)
AW182269 pooled .a 4718 to 5111 394 to 1       394/394
(100 %)
6 diff
(98.5 %id)
AI141085 lung .a 4719 to 5110 392 to 1       392/392
(100 %)
1 diff
(99.8 %id)
AA522637 metastatic prostate bone lesion .a 4726 to 5113 390 to 1       390/391
(99 %)
3 diff
(99.3 %id)
R52395 whole brain .a 4730 to 5086 365 to 1       365/367
(99 %)
21 diff
(94.3 %id)
AA887169 metastatic prostate bone lesion .a 4733 to 5101 369 to 1       369/369
(100 %)
4 diff
(99.0 %id)
AA522666 metastatic prostate bone lesion .a 4737 to 5115 379 to 1       379/379
(100 %)
7 diff
(98.2 %id)
AI264097 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4743 to 5106 364 to 1       364/364
(100 %)
0 diff
(100 %id)
N67852 melanocyte .a 4747 to 5095 352 to 1       352/352
(100 %)
8 diff
(97.8 %id)
BM724126 eye, fetal eye .a 4747 to 5093 347 to 1     Submitted on the opposite strand 347/355
(97 %)
0 diff
(100 %id)
TI_151757336   .a 4750 to 5093 70 to 413     Submitted on the opposite strand 344/967
(35 %)
2 diff
(99.8 %id)
AA669439 lung, lung carcinoma .a 4775 to 5055 280 to 1       280/280
(100 %)
1 diff
(99.7 %id)
AA025936 heart .a 4784 to 5118 336 to 1   fully sequenced,   336/336
(100 %)
1 diff
(99.8 %id)
AA235280 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4790 to 5084 298 to 4       295/298
(98 %)
0 diff
(100 %id)
AA927208 pooled .a 4790 to 5107 317 to 1       317/317
(100 %)
2 diff
(99.4 %id)
AA723696 pooled .a 4807 to 5090 284 to 1       284/284
(100 %)
4 diff
(98.6 %id)
T82421 lung .a 4809 to 5065 255 to 1       255/255
(100 %)
3 diff
(98.9 %id)
N73589 liver and spleen .a 4811 to 5086 279 to 1   fully sequenced,   279/279
(100 %)
9 diff
(96.8 %id)
DA105175 cerebellum .a 4813 to 5363 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA403162 thalamus .a 4813 to 5132 2 to 320   capped   319/319
(100 %)
1 diff
(99.7 %id)
AA777894 liver and spleen .a 4830 to 5086 257 to 1       257/257
(100 %)
1 diff
(99.7 %id)
AA458578   .a 4831 to 5107 277 to 1       277/277
(100 %)
1 diff
(99.7 %id)
AI202377 Prostate .a 4833 to 5110 278 to 1       278/278
(100 %)
2 diff
(99.3 %id)
AI373225 Kidney .a 4842 to 5101 260 to 1       260/260
(100 %)
0 diff
(100 %id)
AI699943 pooled germ cell tumors .a 4845 to 5096 252 to 1       252/252
(100 %)
2 diff
(99.3 %id)
DA809837 brain .a 4868 to 5232 2 to 366   capped   365/365
(100 %)
0 diff
(100 %id)
BM674388 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4873 to 5108 236 to 1   fully sequenced, Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 236/236
(100 %)
0 diff
(100 %id)
AA777465 liver and spleen .a 4880 to 5086 207 to 1       207/207
(100 %)
0 diff
(100 %id)
AA327282 colon .a 4891 to 5090 1 to 200       200/200
(100 %)
0 diff
(100 %id)
AW952304   .a 4906 to 5090 1 to 185   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 185/185
(100 %)
0 diff
(100 %id)
AA775172 lung .a 4912 to 5059 148 to 1       148/148
(100 %)
0 diff
(100 %id)
AI971337 Prostate .a 4915 to 5091 177 to 1       177/177
(100 %)
3 diff
(98.4 %id)
DA759940   .a 4956 to 5251 2 to 297   capped   296/296
(100 %)
0 diff
(100 %id)
DA127964 cerebellum .a 4994 to 5605 2 to 616   capped   615/615
(100 %)
4 diff
(99.4 %id)
AA807359 brain, substantia nigra .a 5006 to 5090 85 to 1       85/85
(100 %)
0 diff
(100 %id)
DB220184 trachea .a 5007 to 5232 2 to 229   capped   228/228
(100 %)
2 diff
(99.2 %id)
AI694733 carcinoid, lung .a 5051 to 5370 1 to 319     Submitted on the opposite strand 319/319
(100 %)
3 diff
(99.1 %id)
DA798209 brain .a 5088 to 5657 2 to 571   tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
BF947711 nervous_normal .a 5097 to 5267 171 to 1       171/212
(80 %)
1 diff
(99.6 %id)
BF947673 nervous_normal .a 5110 to 5267 160 to 1       160/160
(100 %)
3 diff
(98.2 %id)
DA721262   .a 5110 to 5653 2 to 547   capped   546/547
(99 %)
3 diff
(99.5 %id)
CR596491 fetal brain .a 5132 to 8432 1 to 3301   tiling clone,   3301/3301
(100 %)
0 diff
(100 %id)
AL536554 brain, fetal brain .a 5132 to 6061 1 to 924       924/924
(100 %)
34 diff
(96.4 %id)
DA399740 thalamus .a 5157 to 5722 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
DA298006 hippocampus .a 5218 to 5789 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA519095 brain .a 5281 to 5832 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA744208   .a 5316 to 5858 2 to 545   capped   544/544
(100 %)
3 diff
(99.5 %id)
DA505801 brain .a 5414 to 5977 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA804970 brain .a 5440 to 5947 2 to 509   capped   508/508
(100 %)
2 diff
(99.7 %id)
DA776915 brain .a 5448 to 6020 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA125893 cerebellum .a 5478 to 6054 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
R06676 liver and spleen .a 5556 to 5837 1 to 291       291/300
(97 %)
15 diff
(95.0 %id)
DA770862 brain .a 5568 to 6019 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
DA771165 brain .a 5571 to 6130 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
CN411821 embryonic stem cells, cell lines H1, H7, andH9 .a 5587 to 6188 1 to 601       601/601
(100 %)
2 diff
(99.7 %id)
DA252005 caudate nucleus .a 5609 to 6125 2 to 518   capped   517/517
(100 %)
2 diff
(99.7 %id)
DA789230 brain .a 5611 to 6188 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
AA865857 pooled germ cell tumors .a 5671 to 6019 357 to 6       352/357
(98 %)
0 diff
(100 %id)
DA538198 Kidney .a 5689 to 6285 2 to 598   capped   597/597
(100 %)
2 diff
(99.7 %id)
DA732786   .a 5704 to 6454 2 to 767   capped   766/811
(94 %)
30 diff
(96.4 %id)
DA493614 brain .a 5718 to 6213 2 to 498   capped   497/497
(100 %)
4 diff
(99.2 %id)
BM450162 melanotic melanoma, skin .a 5949 to 6848 1 to 912       912/1053
(86 %)
23 diff
(97.9 %id)
BX451725 brain, fetal brain .a 5958 to 6887 1 to 918       918/918
(100 %)
31 diff
(96.7 %id)
DA174698 amygdala .a 6031 to 6566 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA285656 corpus callosum .a 6244 to 6733 2 to 491   capped   490/490
(100 %)
1 diff
(99.8 %id)
DA279966 corpus callosum .a 6304 to 6871 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BF130205 hypernephroma, Kidney .a 6396 to 6973 1 to 570       570/811
(70 %)
36 diff
(95.6 %id)
BX477901   .a 6432 to 6928 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
N20570 melanocyte .a 6432 to 6611 350 to 172       179/350
(51 %)
0 diff
(100 %id)
BG433889 Kidney .a 6482 to 7217 1 to 740       740/840
(88 %)
24 diff
(97.2 %id)
BU189172 melanotic melanoma, skin .a 6487 to 7320 1 to 841       841/841
(100 %)
14 diff
(98.4 %id)
DA009377 adrenal gland .a 6497 to 7053 2 to 558   capped   557/562
(99 %)
2 diff
(99.7 %id)
AL534493 brain, fetal brain .a 6577 to 7375 1 to 801       801/801
(100 %)
7 diff
(99.2 %id)
BM697669 eye, fetal eyes .a 6791 to 7250 1 to 460       460/460
(100 %)
0 diff
(100 %id)
BX433254 brain, fetal brain .a 6817 to 7670 853 to 1       853/854
(99 %)
3 diff
(99.7 %id)
Z44547 brain, total brain .a 6830 to 7091 1 to 262       262/262
(100 %)
0 diff
(100 %id)
BG565914 Liver .a 6862 to 7588 1 to 740       740/745
(99 %)
27 diff
(96.4 %id)
BF738151 bladder_tumor .a 6864 to 7155 13 to 306       294/306
(96 %)
6 diff
(98.1 %id)
BF822549 kidney_tumor .a 6864 to 7155 13 to 306       294/306
(96 %)
6 diff
(98.1 %id)
BI860472 breast, mammary adenocarcinoma, cell line .a 6871 to 7599 1 to 730       730/730
(100 %)
9 diff
(98.8 %id)
TI_57189426   .a 6871 to 7599 49 to 778       730/730
(100 %)
9 diff
(98.8 %id)
BM757845 stomach .a 6875 to 7449 1 to 575       575/575
(100 %)
0 diff
(100 %id)
BM783736 stomach .a 6875 to 7583 1 to 709       709/709
(100 %)
0 diff
(100 %id)
H19222 whole brain .a 6876 to 7309 1 to 442     Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 442/445
(99 %)
12 diff
(97.4 %id)
H23299 whole brain .a 6912 to 7409 1 to 503       503/504
(99 %)
10 diff
(98.1 %id)
Z45896 brain, total brain .a 6917 to 7147 1 to 231       231/231
(100 %)
0 diff
(100 %id)
W27737 eye, retina .a 6924 to 7389 25 to 489       465/523
(88 %)
26 diff
(95.1 %id)
BG334421 melanotic melanoma, skin .a 7081 to 7792 1 to 719       719/929
(77 %)
28 diff
(97.0 %id)
H65137 nose, olfactory epithelium .a 7133 to 7569 1 to 441       441/446
(98 %)
26 diff
(94.2 %id)
AA425069 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 7138 to 7588 1 to 451       451/451
(100 %)
0 diff
(100 %id)
AA089790   .a 7180 to 7446 1 to 268       268/269
(99 %)
10 diff
(96.3 %id)
AL565536 brain, fetal brain .a 7586 to 8406 856 to 36       821/860
(95 %)
0 diff
(100 %id)
DB364413   .a 7886 to 8461 573 to 1       573/575
(99 %)
12 diff
(98.0 %id)
DB317092 brain .a 7919 to 8473 555 to 1   tiling clone,   555/555
(100 %)
0 diff
(100 %id)
DB295215 adrenal gland .a 7923 to 8461 539 to 1       539/539
(100 %)
0 diff
(100 %id)
H19223 whole brain .a 8036 to 8471 469 to 13   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 457/459
(99 %)
28 diff
(93.9 %id)
H23185 whole brain .a 8069 to 8478 423 to 2       422/480
(87 %)
0 diff
(100 %id)
Z41523 brain, total brain .a 8198 to 8461 264 to 1       264/264
(100 %)
0 diff
(100 %id)
H65091 nose, olfactory epithelium .a 8286 to 8441 156 to 1       156/156
(100 %)
0 diff
(100 %id)
NM_015277.4   .b 1 to 8413 1 to 8413 exact RefSeq,   8413/8413
(100 %)
0 diff
(100 %id)
AB071179   .b 161 to 5030 1 to 4871   tiling clone,   4871/4871
(100 %)
3 diff
(100.0 %id)
BC000621 Skin, melanotic melanoma. .b 575 to 3575 1 to 3001   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3001/3001
(100 %)
0 diff
(100 %id)
BC019345 Uterus, endometrium adenocarcinoma .b 575 to 3575 1 to 3001   available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3001/3001
(100 %)
0 diff
(100 %id)
BM557441 melanotic melanoma, skin .b 592 to 1469 22 to 913       892/1076
(82 %)
32 diff
(97.1 %id)
BG490588 large cell carcinoma, lung .b 879 to 1592 1 to 721       717/848
(84 %)
20 diff
(97.7 %id)
AW996429 breast_normal .b 994 to 1388 1 to 395       395/395
(100 %)
4 diff
(99.0 %id)
DA244881 brain .b 1107 to 1637 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA046787   .b 1146 to 1922 2 to 778   capped   777/785
(98 %)
1 diff
(99.9 %id)
BG770416 melanotic melanoma, high MDR (cell line), skin .b 1154 to 2058 1 to 902       902/950
(94 %)
22 diff
(97.7 %id)
CD655521 Embryonic Stem cells .b 1249 to 2058 5 to 813       809/814
(99 %)
11 diff
(98.7 %id)
DA092274 cerebellum .b 1260 to 1825 2 to 568   capped   567/567
(100 %)
6 diff
(99.0 %id)
BF196851 brain, glioblastoma (pooled) .b 1276 to 1772 497 to 1       497/497
(100 %)
0 diff
(100 %id)
BQ643568 hepatocellular carcinoma, cell line, Liver .c 1 to 359 1 to 359   tiling clone,   359/1302
(27 %)
2 diff
(99.9 %id)
BC032597 Skin, melanotic melanoma. .c 13 to 3351 11 to 3351   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3341/3341
(100 %)
10 diff
(99.8 %id)
BM453891 melanotic melanoma, skin .c 14 to 821 1 to 813       813/879
(92 %)
17 diff
(98.1 %id)
DR003384 fetal brain .c 21 to 364 1 to 345       345/609
(56 %)
12 diff
(98.1 %id)
BG122821 adenocarcinoma, cell line, Liver .c 526 to 1235 1 to 731       645/964
(66 %)
48 diff
(95.1 %id)
AY112984   .d 1 to 3411 1 to 3410 A44P tiling clone,   3410/3410
(100 %)
2 diff
(100.0 %id)
NM_001144968.1   .d 1 to 8378 1 to 8378 exact RefSeq,   8378/8378
(100 %)
0 diff
(100 %id)
BF965237 muscle (skeletal) .e 1 to 329 1 to 329   tiling clone,   329/701
(46 %)
4 diff
(99.5 %id)
DQ181796   .e 15 to 3431 1 to 3417 exact tiling clone,   3417/3417
(100 %)
0 diff
(100 %id)
NM_001144971.1   .e 15 to 8420 1 to 8406 exact RefSeq,   8406/8406
(100 %)
0 diff
(100 %id)
BF678906 Prostate .f 1 to 653 1 to 649   tiling clone, AAA   649/649
(100 %)
11 diff
(98.4 %id)
NM_001144969.1   .f 15 to 8332 1 to 8318 exact RefSeq,   8318/8318
(100 %)
0 diff
(100 %id)
AY112985   .f 19 to 3365 9 to 3354 A44P tiling clone,   3346/3354
(99 %)
9 diff
(99.8 %id)
AY112983   .g 1 to 3421 1 to 3420 A18P tiling clone,   3420/3420
(100 %)
2 diff
(100.0 %id)
NM_001144965.1   .g 1 to 8388 1 to 8388 exact RefSeq,   8388/8388
(100 %)
0 diff
(100 %id)
DC381911 placenta .h 1 to 554 1 to 554   tiling clone,   554/554
(100 %)
0 diff
(100 %id)
AY243319 lung .h 14 to 431 1 to 418       418/418
(100 %)
0 diff
(100 %id)
DC363885   .h 14 to 576 1 to 563       563/563
(100 %)
0 diff
(100 %id)
NM_001144966.1   .h 14 to 8313 1 to 8300 exact RefSeq,   8300/8300
(100 %)
0 diff
(100 %id)
DC416485 trachea .h 17 to 577 1 to 561       561/561
(100 %)
0 diff
(100 %id)
DC299395   .h 47 to 609 1 to 563       563/563
(100 %)
0 diff
(100 %id)
AK300444 placenta .h 50 to 3351 1 to 3302 N524S tiling clone,   3302/3307
(99 %)
4 diff
(99.9 %id)
DC299077   .h 50 to 610 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC300340   .h 50 to 617 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DC300402   .h 50 to 578 1 to 529       529/529
(100 %)
0 diff
(100 %id)
DW447811 Liver .h 50 to 236 17 to 203       187/211
(88 %)
3 diff
(98.6 %id)
BP237554 Liver .h 50 to 672 1 to 623       623/623
(100 %)
0 diff
(100 %id)
CB108765 Liver .h 50 to 650 1 to 601       601/601
(100 %)
2 diff
(99.7 %id)
DC381620 placenta .h 50 to 640 1 to 591       591/593
(99 %)
1 diff
(99.9 %id)
DC381975 placenta .h 50 to 590 1 to 541       541/541
(100 %)
0 diff
(100 %id)
DC382211 placenta .h 50 to 595 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
DC382536 placenta .h 50 to 687 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
DC383549 Prostate .h 50 to 610 1 to 561       561/561
(100 %)
0 diff
(100 %id)
BP364037 lung .h 50 to 631 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC417164 trachea .h 58 to 637 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
BG252484 adenocarcinoma, cell line, Liver .h 62 to 743 1 to 688       648/996
(65 %)
27 diff
(97.3 %id)
DC358947 lung .h 64 to 625 1 to 562       562/562
(100 %)
0 diff
(100 %id)
CN314402 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 66 to 795 1 to 731       731/735
(99 %)
2 diff
(99.8 %id)
BX361117 Placenta Cot 25-normalized .h 67 to 1101 1 to 1032       1032/1032
(100 %)
34 diff
(96.8 %id)
Z20619   .h 71 to 287 1 to 217       217/219
(99 %)
7 diff
(96.9 %id)
AF210730   .h 101 to 3346 1 to 3246 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3246/3246
(100 %)
2 diff
(100.0 %id)
TI_57228572   .h 108 to 991 52 to 934       883/897
(98 %)
15 diff
(98.4 %id)
BI869524 adenocarcinoma, cell line, Liver .h 109 to 991 1 to 882       882/896
(98 %)
15 diff
(98.4 %id)
DC414659 trachea .h 165 to 752 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
DC415969 trachea .i 1 to 500 6 to 505   tiling clone,   505/505
(100 %)
0 diff
(100 %id)
AL137469 testis .i 186 to 2952 1 to 2767   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2767/2767
(100 %)
0 diff
(100 %id)
BY799685 eye .i 657 to 1231 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
DA243227 brain .j 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
2 diff
(99.7 %id)
AF385931   .j 62 to 3659 1 to 3599   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 3599/3599
(100 %)
3 diff
(100.0 %id)
NM_001144964.1   .j 62 to 8497 1 to 8436   RefSeq,   8436/8436
(100 %)
0 diff
(100 %id)
BE000802 breast_normal .j 124 to 368 282 to 32     Submitted on the opposite strand 251/295
(85 %)
0 diff
(100 %id)
BE000845 breast_normal .j 124 to 354 232 to 2     Submitted on the opposite strand 231/245
(94 %)
0 diff
(100 %id)
DA819220   .k 1 to 554 2 to 555   tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
NM_001144970.1   .k 15 to 8360 1 to 8346   RefSeq,   8346/8346
(100 %)
0 diff
(100 %id)
BP350606   .k 15 to 597 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA220385 brain .k 16 to 566 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA248109 brain .k 16 to 598 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA457548 tongue, tumor tissue .k 16 to 456 2 to 442   capped   441/441
(100 %)
0 diff
(100 %id)
DA183003 amygdala .k 18 to 566 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA328074 hippocampus .k 22 to 518 2 to 499   capped   498/512
(97 %)
2 diff
(99.7 %id)
DA216983 brain .k 33 to 513 2 to 486   capped   485/485
(100 %)
5 diff
(99.0 %id)
AK294963 brain .k 51 to 3726 1 to 3680 K22R L166R E185G A449K V450A ... tiling clone,   3678/3680
(99 %)
7 diff
(99.9 %id)
DC323126 brain .k 51 to 612 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC342827 thalamus .k 51 to 619 1 to 569       569/570
(99 %)
2 diff
(99.7 %id)
BP218498 caudate nucleus .k 51 to 518 1 to 468       468/580
(80 %)
6 diff
(99.0 %id)
DA226067 brain .k 52 to 566 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
AY243318 lung .k 60 to 538 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
AB007899 brain .k 100 to 4977 1 to 4879   tiling clone, available from KIAA,   4879/4879
(100 %)
3 diff
(100.0 %id)
DA192505 amygdala .k 232 to 791 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
DA100948 cerebellum .k 252 to 838 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB229842 trachea .k 268 to 839 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA193303 amygdala .k 318 to 839 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
AA489302   .l 1 to 479 1 to 478   tiling clone,   478/478
(100 %)
1 diff
(99.8 %id)
CF121144 CNCAP(3)T-225 cell line, Prostate .l 501 to 1210 8 to 717   tiling clone,   710/717
(99 %)
8 diff
(98.9 %id)
TI_154180143   .l 501 to 1337 76 to 909   tiling clone,   834/835
(99 %)
11 diff
(98.7 %id)
BX497814 Liver .l 1049 to 1540 1 to 492   tiling clone,   492/492
(100 %)
8 diff
(98.4 %id)
AA486281   .l 1286 to 1734 447 to 1       447/447
(100 %)
3 diff
(99.4 %id)
BM930263 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .l 1296 to 1739 444 to 1   tiling clone, Submitted on the opposite strand 444/447
(99 %)
2 diff
(99.6 %id)
BM683738 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .l 1297 to 1745 1 to 449     Submitted on the opposite strand 449/452
(99 %)
6 diff
(98.7 %id)
BP274300 Kidney .m 1 to 579 1 to 581   tiling clone,   579/581
(99 %)
4 diff
(99.4 %id)
AY751751 Liver .m 478 to 1244 1 to 767   tiling clone,   767/767
(100 %)
2 diff
(99.8 %id)
AV729150 hypothalamus .n 1 to 406 10 to 415   tiling clone,   406/415
(97 %)
7 diff
(98.4 %id)
CD109507 Human Placenta, placenta .n 321 to 1034 18 to 745   tiling clone,   728/771
(94 %)
41 diff
(94.7 %id)
AI637786 pooled germ cell tumors .n 750 to 1273 524 to 1   tiling clone,   524/524
(100 %)
1 diff
(99.9 %id)
BX501711 Liver .n 849 to 1273 57 to 481   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 425/481
(88 %)
6 diff
(98.8 %id)
BF574344 muscle (skeletal) .o 1 to 660 1 to 706   tiling clone,   706/820
(86 %)
29 diff
(96.5 %id)
CR598386 T cells (Jurkat cell line) Cot10-normalized .o 430 to 1540 1 to 1111 exact tiling clone,   1111/1111
(100 %)
0 diff
(100 %id)
BP238150 Liver .p 1 to 610 1 to 610 R23F tiling clone,   610/610
(100 %)
3 diff
(99.6 %id)
DC321782 brain .q 1 to 572 1 to 572 exact tiling clone,   572/572
(100 %)
0 diff
(100 %id)
BP329429 rectum .r 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
TI_57152993   .s 1 to 687 84 to 774       691/936
(73 %)
14 diff
(98.6 %id)
BI765101 pooled colon, kidney, stomach .s 7 to 687 1 to 685   tiling clone,   685/847
(80 %)
10 diff
(98.9 %id)
BG540188 lung .s 9 to 651 1 to 642       642/642
(100 %)
15 diff
(97.7 %id)
BI762849 pooled colon, kidney, stomach .s 19 to 633 1 to 636       636/966
(65 %)
38 diff
(96.1 %id)
BI762734 pooled colon, kidney, stomach .s 19 to 777 1 to 775 I41L I44L E49D E58A W59L ... tiling clone,   775/784
(98 %)
36 diff
(95.5 %id)
BI762938 pooled colon, kidney, stomach .s 19 to 890 1 to 899 F80S W96L K97E L98T G99W ... tiling clone,   899/899
(100 %)
49 diff
(94.6 %id)
TI_57150397   .s 19 to 777 64 to 838 I41L I44L E49D E58A W59L ...     775/847
(91 %)
44 diff
(94.9 %id)
TI_57150540   .s 19 to 890 27 to 925 F80S W96L K97E L98T G99W ...     899/925
(97 %)
34 diff
(96.4 %id)
TI_57150318   .s 20 to 633 59 to 693       635/1023
(62 %)
29 diff
(97.2 %id)
AI620533 Prostate .s 339 to 736 405 to 8   tiling clone,   398/405
(98 %)
0 diff
(100 %id)
AI620532 Prostate .s 393 to 736 347 to 4       344/347
(99 %)
0 diff
(100 %id)
AA662143 normal prostate, Prostate .s 401 to 730 333 to 8   tiling clone,   326/333
(97 %)
0 diff
(100 %id)
BF514087   .s 432 to 758 14 to 340   tiling clone, Submitted on the opposite strand 327/352
(92 %)
11 diff
(96.9 %id)
AW183334 pooled .s 446 to 728 313 to 29       285/313
(91 %)
0 diff
(100 %id)
AW193035 adenocarcinoma, Pancreas .s 504 to 728 262 to 38       225/262
(85 %)
0 diff
(100 %id)
BP340588 Spleen .t 1 to 581 1 to 581 exact tiling clone,   581/581
(100 %)
0 diff
(100 %id)
AK130420 rectum .u 1 to 2066 1 to 2066 exact tiling clone, available from FLJ,   2066/2066
(100 %)
1 diff
(100.0 %id)
BQ007027 Chondrosarcoma, Left Pelvis .u 1333 to 2059 745 to 19 G3A E42X R44A I45Y R46P ... AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 727/727
(100 %)
3 diff
(99.6 %id)
DC357667   .va 1 to 553 1 to 553 exact tiling clone,   553/553
(100 %)
0 diff
(100 %id)
AK091189 tongue, tumor tissue .vb 1 to 2742 2 to 2747 exact tiling clone, available from FLJ,   2747/2747
(100 %)
2 diff
(100.0 %id)
DA438772 tongue, tumor tissue .vb 1 to 597 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DB313547 tongue, tumor tissue .vb 2208 to 2742 535 to 1       535/535
(100 %)
0 diff
(100 %id)
BF673328 Prostate .vc 1 to 139 1 to 139 exact tiling clone,   744/900
(82 %)
43 diff
(95.3 %id)
CV373443 prostate_tumor .vd 1 to 271 154 to 428   tiling clone,   271/428
(63 %)
6 diff
(98.6 %id)
BY797839 eye .vd 39 to 651 1 to 613   tiling clone,   613/613
(100 %)
0 diff
(100 %id)
CV399297 prostate_tumor .vd 162 to 418 6 to 263       258/263
(98 %)
20 diff
(92.4 %id)
AY243316 lung .vd 476 to 769 1 to 297       297/310
(95 %)
5 diff
(98.4 %id)
AY243314 lung .vd 520 to 927 1 to 408   tiling clone,   408/408
(100 %)
1 diff
(99.8 %id)
DC351044 brain .vd 869 to 1281 71 to 484 exact tiling clone,   414/484
(85 %)
6 diff
(98.8 %id)
DA646473 mammary gland .ve-u 1 to 772 2 to 769 C28X A50X tiling clone, capped   768/776
(98 %)
6 diff
(99.3 %id)
AK096812 Prostate .ve-u 229 to 2744 1 to 2516 D4Y tiling clone, available from FLJ,   2516/2516
(100 %)
2 diff
(100.0 %id)
DA877808 Prostate .ve-u 230 to 786 2 to 558 D4Y capped   557/557
(100 %)
1 diff
(99.9 %id)
DB361157 mammary gland .ve-u 2182 to 2744 562 to 1       562/562
(100 %)
2 diff
(99.7 %id)
DB330211 Prostate .ve-u 2212 to 2744 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
BG480445 choriocarcinoma, placenta .vf-u 1 to 673 1 to 708   tiling clone,   708/708
(100 %)
32 diff
(95.5 %id)
CV362614 ovary .vf-u 700 to 997 306 to 6   tiling clone, Submitted on the opposite strand 301/314
(95 %)
0 diff
(100 %id)
BX642806   .vf-u 750 to 1178 1 to 429 exact tiling clone,   429/429
(100 %)
0 diff
(100 %id)
BG432676 Kidney .vf-u 894 to 1648 1 to 766       766/776
(98 %)
44 diff
(94.4 %id)
AW376914 colon .vf-u 1022 to 1632 1 to 612   tiling clone,   612/612
(100 %)
5 diff
(99.2 %id)
AW856882 colon .vf-u 1036 to 1223 192 to 6       187/193
(96 %)
0 diff
(100 %id)
AW604320 colon .vf-u 1194 to 1822 649 to 23   tiling clone,   627/649
(96 %)
0 diff
(100 %id)
AW752814 colon .vf-u 1331 to 1831 513 to 13   tiling clone,   501/513
(97 %)
0 diff
(100 %id)
AW752817 colon .vf-u 1365 to 1818 454 to 1   tiling clone,   454/454
(100 %)
0 diff
(100 %id)
AI904428 breast .vf-u 1416 to 1817 418 to 15       404/419
(96 %)
0 diff
(100 %id)
DA727948   .vg-u 1 to 743 2 to 744 exact tiling clone, capped   743/744
(99 %)
1 diff
(99.9 %id)
CK003868 brain/CNS, Human Brain - Cerebellar Cortex .vg-u 12 to 671 1 to 661 exact     661/661
(100 %)
3 diff
(99.6 %id)
W03535.
matches multiple genes
melanocyte .vg-u 25 to 412 1 to 385 S75P V76F R77V W78G S80C ...   also hits gene HPS3 385/385
(100 %)
3 diff
(99.3 %id)
CK904399 Islets of Langerhans, Pancreas .vg-u 35 to 612 1 to 578 exact     578/578
(100 %)
0 diff
(100 %id)
BM023475 Islets of Langerhans, Pancreas .vg-u 35 to 613 1 to 578 R37I K38*     578/578
(100 %)
4 diff
(99.4 %id)
BM023376 Islets of Langerhans, Pancreas .vg-u 51 to 619 1 to 569 R37I K38L G39W     569/569
(100 %)
4 diff
(99.3 %id)
DT218192 brain .vg-u 55 to 679 1 to 625 exact     625/625
(100 %)
1 diff
(99.9 %id)
AA426629 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vg-u 203 to 709 14 to 519       506/519
(97 %)
6 diff
(98.9 %id)
BM714082 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 288 to 708 1 to 421   fully sequenced, Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 421/421
(100 %)
0 diff
(100 %id)
AL596790 human spinal cord .vg-u 328 to 941 615 to 1     Submitted on the opposite strand 615/615
(100 %)
1 diff
(99.9 %id)
BU943808 mixed (pool of 40 RNAs) .vg-u 349 to 1119 1 to 775       775/776
(99 %)
13 diff
(98.4 %id)
BF082988 colon_normal .vg-u 355 to 453 101 to 4       98/101
(97 %)
0 diff
(100 %id)
AL121228 melanoma (MeWo cell line) .vg-u 382 to 666 112 to 396       285/396
(71 %)
6 diff
(98.5 %id)
BF217451 brain, glioblastoma .vg-u 520 to 1149 1 to 614       614/876
(70 %)
27 diff
(97.0 %id)
BM716484 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 586 to 1265 690 to 12     Submitted on the opposite strand 679/693
(97 %)
0 diff
(100 %id)
BU738543 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 587 to 1201 1 to 614     Submitted on the opposite strand 614/614
(100 %)
4 diff
(99.4 %id)
BM673992 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 587 to 1258 1 to 671   AAA Submitted on the opposite strand 671/671
(100 %)
7 diff
(99.0 %id)
BM715529 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 597 to 1265 679 to 12   tiling clone, AAA Submitted on the opposite strand 668/690
(96 %)
0 diff
(100 %id)
BE622143 melanotic melanoma, skin .vg-u 625 to 1255 1 to 637       637/637
(100 %)
7 diff
(99.0 %id)
BQ214305 large cell carcinoma, lung .vg-u 647 to 1200 1 to 559       559/1088
(51 %)
16 diff
(98.6 %id)
FN050713 breast carcinoma .vg-u 652 to 705 54 to 1     Submitted on the opposite strand 54/55
(98 %)
0 diff
(100 %id)
BM023118 Islets of Langerhans, Pancreas .vg-u 669 to 1248 580 to 1       580/580
(100 %)
1 diff
(99.9 %id)
CK904398 Islets of Langerhans, Pancreas .vg-u 678 to 1248 571 to 1       571/571
(100 %)
0 diff
(100 %id)
BM675266 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 678 to 1258 599 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 581/581
(100 %)
0 diff
(100 %id)
AI763298 Kidney .vg-u 687 to 1248 562 to 1       562/569
(98 %)
5 diff
(99.2 %id)
AL536553 brain, fetal brain .vg-u 688 to 1219 532 to 1       953/986
(96 %)
67 diff
(93.3 %id)
AI765473 2 pooled tumors (clear cell type), Kidney .vg-u 696 to 1250 560 to 6       555/560
(99 %)
0 diff
(100 %id)
BX395199 Neuroblastoma Cot 50-normalized .vg-u 697 to 1250 155 to 711       557/711
(78 %)
6 diff
(99.2 %id)
DB326220.
matches multiple genes
brain .vg-u 715 to 1258 544 to 1     also hits gene miriri 544/544
(100 %)
1 diff
(99.9 %id)
FN133573 breast carcinoma .vg-u 733 to 838 1 to 107       107/107
(100 %)
1 diff
(99.1 %id)
AW663926 pooled .vg-u 735 to 1255 526 to 6       521/526
(99 %)
0 diff
(100 %id)
AI805904 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vg-u 761 to 1257 497 to 1       497/497
(100 %)
0 diff
(100 %id)
AI418006 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vg-u 792 to 1258 477 to 11   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 467/467
(100 %)
0 diff
(100 %id)
AI376713   .vg-u 799 to 1250 454 to 2       453/454
(99 %)
0 diff
(100 %id)
BQ030227 lung, Metastatic Chondrosarcoma .vg-u 799 to 1258 478 to 19   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 460/460
(100 %)
0 diff
(100 %id)
N26256 melanocyte .vg-u 825 to 1248 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AI243456 pooled .vg-u 825 to 1258 434 to 1       434/434
(100 %)
0 diff
(100 %id)
D44900 brain .vg-u 832 to 1247 417 to 1     Submitted on the opposite strand 417/417
(100 %)
1 diff
(99.8 %id)
AA424849 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vg-u 832 to 1244 418 to 6       413/418
(98 %)
0 diff
(100 %id)
BU945204 mixed (pool of 40 RNAs) .vg-u 836 to 1264 1 to 429   tiling clone,   429/433
(99 %)
3 diff
(99.4 %id)
AI358418 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .vg-u 840 to 1248 409 to 1       409/409
(100 %)
0 diff
(100 %id)
N33507 melanocyte .vg-u 845 to 1260 418 to 1       418/418
(100 %)
3 diff
(99.3 %id)
BM023192 Islets of Langerhans, Pancreas .vg-u 854 to 1248 395 to 1       395/395
(100 %)
1 diff
(99.8 %id)
N67688.
matches multiple genes
melanocyte .vg-u 860 to 1260 406 to 1     also hits gene HPS3 406/406
(100 %)
5 diff
(98.8 %id)
AI433991 adenocarcinoma, Pancreas .vg-u 875 to 1260 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
AA975075 Kidney .vg-u 878 to 1261 388 to 5       384/388
(98 %)
0 diff
(100 %id)
AA907398 carcinoid, lung .vg-u 894 to 1250 359 to 3       357/359
(99 %)
0 diff
(100 %id)
BU680325 lung, Primary Lung Epithelial Cells .vg-u 961 to 1258 316 to 19   AAA Possibly primed on the genome, locally A rich (37/37 A in genome downstream of last aligned base) 298/306
(97 %)
0 diff
(100 %id)
BM713114 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 968 to 1265 309 to 12     Submitted on the opposite strand 298/309
(96 %)
0 diff
(100 %id)
AI559921 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vg-u 1002 to 1248 247 to 1       247/247
(100 %)
0 diff
(100 %id)
BX369797 Neuroblastoma Cot 50-normalized .vg-u 1116 to 1250 1 to 136       136/139
(97 %)
3 diff
(97.9 %id)
D11900 Liver .vg-u 1129 to 1250 1 to 122       122/123
(99 %)
1 diff
(99.2 %id)
DC336209 hippocampus .vh 1 to 594 1 to 594   tiling clone,   594/594
(100 %)
1 diff
(99.9 %id)
DC418883 trachea .vh 36 to 628 1 to 593   tiling clone,   593/593
(100 %)
0 diff
(100 %id)
DB247002   .vh 323 to 868 2 to 548 exact tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
BU183524 melanotic melanoma, skin .vi 1 to 827 12 to 840 G146R D147G V148M P149S tiling clone,   829/878
(94 %)
9 diff
(99.0 %id)
BU839569 hepatocellular carcinoma, cell line, Liver .vj 1 to 752 1 to 754 exact tiling clone,   754/937
(80 %)
25 diff
(97.4 %id)
BU189167 melanotic melanoma, skin .vk 1 to 667 1 to 667 exact tiling clone,   667/864
(77 %)
1 diff
(99.9 %id)
BG994392 head_neck .vl-u 1 to 561 16 to 576 exact tiling clone,   561/576
(97 %)
6 diff
(99.0 %id)
BG996301 head_neck .vl-u 11 to 451 1 to 439 exact     439/439
(100 %)
4 diff
(99.1 %id)
DC299844   .vm 1 to 555 1 to 555 exact tiling clone,   555/555
(100 %)
0 diff
(100 %id)
AY243313 lung .vn 1 to 172 1 to 173   tiling clone,   173/185
(93 %)
4 diff
(97.9 %id)
AY256662 lung .vn 113 to 551 1 to 439 exact tiling clone,   439/439
(100 %)
1 diff
(99.8 %id)
CN314399 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .vo 1 to 488 1 to 488 F49L tiling clone,   488/490
(99 %)
5 diff
(99.0 %id)
BF882998 lung_tumor .vp-u -8 to 485 1 to 494 H4R G17N Q20* tiling clone,   494/494
(100 %)
23 diff
(95.4 %id)
AY243321 lung .vq 1 to 381 1 to 381 L49F tiling clone,   381/381
(100 %)
8 diff
(98.0 %id)
AW948750 prostate_tumor .vr-u 1 to 370 7 to 375 I2L R4T G5S M8*     369/375
(98 %)
6 diff
(98.4 %id)
AW948748 prostate_tumor .vr-u 4 to 365 17 to 378   tiling clone,   362/378
(95 %)
6 diff
(98.5 %id)
AW948753 prostate_tumor .vr-u 4 to 346 8 to 351   tiling clone,   344/351
(98 %)
6 diff
(98.3 %id)
AW025620 Kidney .vs 1 to 314 314 to 1 exact tiling clone,   314/314
(100 %)
0 diff
(100 %id)
FN097947 breast carcinoma .vt-u 1 to 103 1 to 99   tiling clone,   99/101
(98 %)
5 diff
(95.1 %id)
AI972462 Prostate .vt-u 78 to 284 226 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (23/23 A in genome downstream of last aligned base) 208/208
(100 %)
3 diff
(98.6 %id)
AV709004 adrenal gland Gene NEDD4L, variant not shown         Suspected internal deletion, this clone was ignored    
DA052588   Gene NEDD4L, variant not shown       capped Suspected internal deletion, this clone was ignored    
EC476277 Prostate Gene NEDD4L, variant not shown              
H05550 whole brain Gene NEDD4L, variant not shown         Suspected internal deletion, this clone was ignored    
AW015258   Gene NEDD4L, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BF436834 Prostate Gene NEDD4L, variant not shown         Suspected internal deletion, this clone was ignored    
BM545141 ovary (pool of 3) Gene NEDD4L, variant not shown         Suspected internal deletion, this clone was ignored    
CD652895 Embryonic Stem cells Gene NEDD4L, variant not shown         This clone was ignored    
DB374846 placenta Gene NEDD4L, variant not shown         This clone was ignored    
AU136332 placenta Gene NEDD4L, variant not shown       capped This clone was ignored    
DA869743 Prostate Gene NEDD4L, variant not shown       capped This clone was ignored    
DB329847 Prostate Gene NEDD4L, variant not shown         This clone was ignored    
DC383304 Prostate Gene NEDD4L, variant not shown         Suspected internal deletion, this clone was ignored    
DC426511 Prostate Gene NEDD4L, variant not shown         Suspected internal deletion, this clone was ignored    
TI_154103538   Gene NEDD4L, variant not shown       AAA Suspected internal deletion, this clone was ignored    
CK725192 Chondrosarcoma, Left Pubic Bone Gene NEDD4L, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u, .vf-u, .vg-u, .vh, .vi, .vj, .vk, .vl-u, .vm, .vn, .vo, .vp-u, .vq, .vr-u, .vs, .vt-u, .vu-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI