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Gene NCKAP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
352 supporting clones for gene NCKAP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB011159 brain .a 1 to 4982 1 to 4982 exact tiling clone, available from KIAA,   4982/4982
(100 %)
4 diff
(100.0 %id)
NM_205842.1   .a 358 to 4994 1 to 4637 exact RefSeq,   4637/4637
(100 %)
6 diff
(99.9 %id)
TI_45210301   .a 518 to 1277 82 to 847       766/848
(90 %)
15 diff
(98.3 %id)
DB484027 hippocampus .a 561 to 1064 1 to 504       504/505
(99 %)
5 diff
(99.1 %id)
DA338584 hippocampus .a 762 to 1362 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DA230634 brain .a 782 to 1344 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA320952 hippocampus .a 880 to 1426 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB289559 uterus .a 923 to 1461 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
BP257455 heart .a 927 to 1506 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DB288433 uterus .a 935 to 1461 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
AL134955 melanoma (MeWo cell line) .a 982 to 1634 1 to 653       653/653
(100 %)
0 diff
(100 %id)
DB213830 trachea .a 992 to 1518 2 to 528   capped   527/535
(98 %)
0 diff
(100 %id)
DA316745 hippocampus .a 1002 to 1539 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA721009   .a 1085 to 1645 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA329673 hippocampus .a 1086 to 1655 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB291138 uterus .a 1096 to 1670 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB229895 trachea .a 1117 to 1710 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA117811 cerebellum .a 1121 to 1686 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA232580 brain .a 1124 to 1687 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA407557 thalamus .a 1124 to 1693 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB232808 trachea .a 1126 to 1672 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
AW382559 head_neck .a 1143 to 1421 281 to 1       281/281
(100 %)
5 diff
(98.3 %id)
AW382561 head_neck .a 1147 to 1442 298 to 4       295/302
(97 %)
1 diff
(99.7 %id)
AW382562 head_neck .a 1147 to 1432 288 to 5       284/292
(97 %)
3 diff
(99.0 %id)
DB223379 trachea .a 1165 to 1738 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA313852 hippocampus .a 1175 to 1721 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA194497 amygdala .a 1181 to 1784 2 to 605   capped   604/604
(100 %)
0 diff
(100 %id)
DA314505 hippocampus .a 1183 to 1739 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB073037 testis .a 1183 to 1735 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB083931 testis .a 1183 to 1729 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB231581 trachea .a 1186 to 1775 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA224385 brain .a 1187 to 1747 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA231368 brain .a 1189 to 1716 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA234123 brain .a 1190 to 1771 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA398133 thalamus .a 1190 to 1759 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA417026 thalamus .a 1208 to 1765 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA235916 brain .a 1209 to 1791 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB248527 uterus .a 1227 to 1788 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB072782 testis .a 1228 to 1773 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB085307 testis .a 1255 to 1817 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB071619 testis .a 1288 to 1845 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA020807   .a 1319 to 1879 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA852720 placenta .a 1321 to 1869 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA648892   .a 1325 to 1880 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CD653817 Embryonic Stem cells .a 1328 to 2118 8 to 798       672/834
(80 %)
82 diff
(90.2 %id)
DA213167 brain .a 1332 to 1873 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA325310 hippocampus .a 1351 to 1900 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB276991 uterus .a 1365 to 1844 2 to 481   capped   480/480
(100 %)
0 diff
(100 %id)
DA249696 brain .a 1367 to 1944 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA333569 hippocampus .a 1386 to 1843 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
DA034266   .a 1390 to 1903 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
DA480955   .a 1399 to 1939 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA770704 brain .a 1399 to 1961 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB090121 testis .a 1419 to 1979 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA456508 tongue, tumor tissue .a 1424 to 1982 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB089731 testis .a 1429 to 1989 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA215631 brain .a 1431 to 1976 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA387247 thalamus .a 1433 to 2018 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA800594 brain .a 1452 to 1999 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA525214 brain .a 1462 to 2021 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA843585 placenta .a 1467 to 2047 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB221832 trachea .a 1472 to 2052 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
BF899072 marrow .a 1475 to 1878 427 to 24     Submitted on the opposite strand 404/445
(90 %)
3 diff
(99.4 %id)
DA247980 brain .a 1485 to 2073 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA458972 tongue, tumor tissue .a 1485 to 2023 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA218503 brain .a 1487 to 2036 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA172275 amygdala .a 1503 to 2068 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CN304882 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1507 to 2167 1 to 661       661/661
(100 %)
0 diff
(100 %id)
BE018306 cervix .a 1519 to 1993 27 to 501       475/501
(94 %)
0 diff
(100 %id)
DB087553 testis .a 1540 to 2102 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DR155638 human embryonic stem cells differentiated toan early endodermal cell type .a 1566 to 2371 1 to 806       806/806
(100 %)
0 diff
(100 %id)
DA518772 brain .a 1597 to 2143 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB200956 trachea .a 1602 to 2164 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
EC467897 Prostate .a 1633 to 1742 1 to 110       110/110
(100 %)
5 diff
(95.5 %id)
DA195764 amygdala .a 1645 to 2207 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CX163894 human embryonic stem cells differentiated toan early endodermal cell type .a 1690 to 2531 1 to 842       842/842
(100 %)
1 diff
(99.9 %id)
EC550623 Prostate .a 1707 to 1794 6 to 93       88/93
(94 %)
6 diff
(93.6 %id)
DA083187 cerebellum .a 1717 to 2269 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
EC512523 Prostate .a 1720 to 1812 1 to 93       93/93
(100 %)
0 diff
(100 %id)
DA406215 thalamus .a 1730 to 2251 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
EC495597 Prostate .a 1733 to 1814 1 to 81       81/87
(93 %)
1 diff
(98.9 %id)
BP375775 uterus .a 1738 to 2318 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DB081437 testis .a 1743 to 2269 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA292526 hippocampus .a 1814 to 2394 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA723687   .a 1815 to 2372 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB098185 testis .a 1816 to 2368 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BU172883 melanotic melanoma, skin .a 1827 to 2653 12 to 844       833/860
(96 %)
26 diff
(97.0 %id)
DA856922 placenta .a 1832 to 2387 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA882501   .a 1980 to 2534 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
AU133346   .a 1981 to 2841 2 to 865   capped   864/864
(100 %)
5 diff
(99.5 %id)
AU125389   .a 2001 to 2719 2 to 717   capped   716/716
(100 %)
5 diff
(99.4 %id)
DB271456 uterus .a 2008 to 2554 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BP251334 hippocampus .a 2044 to 2646 1 to 603       603/603
(100 %)
0 diff
(100 %id)
DA867975 Prostate .a 2045 to 2549 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DA717980   .a 2050 to 2591 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA795911 brain .a 2050 to 2575 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA512936 brain .a 2051 to 2562 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA438859 tongue, tumor tissue .a 2095 to 2687 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA090893 cerebellum .a 2096 to 2673 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA729687   .a 2098 to 2633 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
BJ991659 hepatoblastoma .a 2110 to 2590 1 to 481       481/481
(100 %)
0 diff
(100 %id)
AW375848 colon .a 2141 to 2538 398 to 3       396/398
(99 %)
7 diff
(98.3 %id)
DA777730 brain .a 2166 to 2737 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BI093191 cervix .a 2195 to 2959 1 to 766       766/768
(99 %)
11 diff
(98.6 %id)
DA444473 tongue, tumor tissue .a 2203 to 2767 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CX781298 human embryonic stem cells .a 2217 to 3027 1 to 811       811/811
(100 %)
0 diff
(100 %id)
DA495250 brain .a 2218 to 2787 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA658760   .a 2218 to 2786 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB170513 kidney, tumor tissue .a 2218 to 2782 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA305501 hippocampus .a 2219 to 2773 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA443793 tongue, tumor tissue .a 2219 to 2788 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB199785 trachea .a 2222 to 2793 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA747910   .a 2264 to 2822 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA595956   .a 2338 to 3107 2 to 770   capped   769/770
(99 %)
2 diff
(99.8 %id)
DA777176 brain .a 2339 to 2902 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA535679 heart .a 2354 to 2938 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA752704   .a 2406 to 2966 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA272583 caudate nucleus .a 2408 to 2970 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA444766 tongue, tumor tissue .a 2408 to 2979 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA501366 brain .a 2409 to 2977 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA495076 brain .a 2411 to 2972 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA506930 brain .a 2416 to 2977 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA060484 cerebellum .a 2418 to 2968 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA280739 corpus callosum .a 2422 to 2973 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB487167 hypothalamus .a 2426 to 2865 1 to 440       440/440
(100 %)
1 diff
(99.8 %id)
DA310408 hippocampus .a 2437 to 3006 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA589659 lung .a 2470 to 2953 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DA266349 caudate nucleus .a 2505 to 3041 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA597996   .a 2516 to 3071 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK002153 placenta .a 2524 to 4290 1 to 1768   available from FLJ,   1768/1768
(100 %)
3 diff
(99.9 %id)
DB120380 thymus .a 2526 to 3076 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA596844   .a 2527 to 3022 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA476428   .a 2568 to 3117 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB251708 uterus .a 2586 to 3126 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA276815 corpus callosum .a 2603 to 3176 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA664687   .a 2618 to 3170 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB251243 uterus .a 2618 to 3183 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AU127635   .a 2629 to 3344 2 to 719   capped   718/720
(99 %)
13 diff
(98.2 %id)
DA170558 amygdala .a 2636 to 3212 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BQ962637 leiomyosarcoma, uterus .a 2642 to 3470 1 to 836       836/899
(92 %)
10 diff
(98.9 %id)
BP293859 lung .a 2658 to 3239 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP293988 lung .a 2658 to 3237 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DA549132   .a 2674 to 3245 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA750826   .a 2704 to 3284 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA795471 brain .a 2710 to 3276 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
AU124348   .a 2712 to 3503 2 to 799   capped   798/811
(98 %)
23 diff
(97.2 %id)
DA626304 Kidney .a 2715 to 3248 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
BE884436 leiomyosarcoma, uterus .a 2725 to 3359 1 to 634       634/634
(100 %)
2 diff
(99.7 %id)
BF991908 placenta_normal .a 2733 to 3152 440 to 25       416/440
(94 %)
0 diff
(100 %id)
TI_151797042   .a 2742 to 3270 82 to 615       534/815
(65 %)
19 diff
(97.7 %id)
FN135499 breast carcinoma .a 2765 to 2849 1 to 84       84/96
(87 %)
2 diff
(98.0 %id)
BM828104 Ascites, stomach .a 2807 to 3378 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DA595065 lung .a 2808 to 3364 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
N44074 melanocyte .a 2808 to 3032 1 to 225       225/225
(100 %)
0 diff
(100 %id)
AU126247   .a 2809 to 3498 2 to 691   capped   690/892
(77 %)
2 diff
(99.8 %id)
DA522243 brain .a 2816 to 3365 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA060201 cerebellum .a 2824 to 3378 2 to 556   capped   555/566
(98 %)
0 diff
(100 %id)
DA489645 brain .a 2832 to 3391 2 to 561   capped   560/561
(99 %)
0 diff
(100 %id)
AU124752   .a 2834 to 3644 2 to 813   capped   812/862
(94 %)
8 diff
(99.1 %id)
BP203146 coronary artery .a 2847 to 3427 1 to 581       581/583
(99 %)
1 diff
(99.9 %id)
DA487024 brain .a 2849 to 3441 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA162592 amygdala .a 2850 to 3414 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
EC571543 Prostate .a 2850 to 2950 1 to 101       101/101
(100 %)
0 diff
(100 %id)
DA600961   .a 2850 to 3409 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BE000787 breast_normal .a 2855 to 2968 124 to 10     Submitted on the opposite strand 115/137
(83 %)
1 diff
(99.3 %id)
DA511566 brain .a 2881 to 3463 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA025513   .a 2882 to 3442 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BI039964 nervous_tumor .a 2894 to 3475 619 to 39       581/638
(91 %)
14 diff
(97.9 %id)
BQ345359 nervous_tumor .a 2894 to 3226 630 to 297       334/657
(50 %)
11 diff
(98.4 %id)
BQ345396 nervous_tumor .a 2894 to 3469 623 to 45       579/642
(90 %)
28 diff
(95.7 %id)
BF923740 nervous_tumor .a 2900 to 3475 607 to 35     Submitted on the opposite strand 573/707
(81 %)
14 diff
(98.1 %id)
CN304901 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2903 to 3573 1 to 671       671/671
(100 %)
1 diff
(99.9 %id)
BI036909 nervous_tumor .a 2932 to 3447 528 to 9       520/529
(98 %)
34 diff
(93.6 %id)
DB170137 kidney, tumor tissue .a 2955 to 3528 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA088004 cerebellum .a 2975 to 3538 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
FN066645 breast carcinoma .a 2990 to 3057 1 to 68       68/69
(98 %)
1 diff
(98.6 %id)
DA208669 brain .a 3001 to 3555 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
EH317567   .a 3015 to 3069 1 to 55       55/55
(100 %)
0 diff
(100 %id)
CD250921 brain, Pituitary .a 3023 to 3889 1 to 877       875/901
(97 %)
16 diff
(98.3 %id)
DB033093 testis .a 3044 to 3583 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
FN104489 breast carcinoma .a 3071 to 3170 1 to 103       103/103
(100 %)
3 diff
(97.1 %id)
BQ433737 melanotic melanoma, skin .a 3098 to 3958 1 to 867       867/904
(95 %)
28 diff
(97.0 %id)
F08768 brain, total brain .a 3100 to 3399 1 to 300       300/300
(100 %)
0 diff
(100 %id)
DA078775 cerebellum .a 3144 to 3702 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
TI_151797141   .a 3149 to 3808 122 to 782       663/670
(98 %)
9 diff
(98.7 %id)
BM541265 leiomyosarcoma, uterus .a 3158 to 4232 1 to 1092       1091/1097
(99 %)
66 diff
(94.0 %id)
AU120256 whole embryo, mainly body .a 3162 to 3879 2 to 720   capped   719/723
(99 %)
3 diff
(99.6 %id)
AW391146 stomach .a 3179 to 3339 161 to 1       161/175
(92 %)
4 diff
(97.8 %id)
DA557266   .a 3242 to 3795 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
AU133773 ovary, tumor tissue .a 3244 to 4047 2 to 804   capped   803/816
(98 %)
5 diff
(99.4 %id)
BE708314 head_neck .a 3253 to 3508 256 to 1       256/256
(100 %)
0 diff
(100 %id)
BU957590 adenocarcinoma, cell line, breast .a 3348 to 4197 1 to 851       851/851
(100 %)
6 diff
(99.3 %id)
BE891010 melanotic melanoma, skin .a 3349 to 4091 1 to 737   tiling clone,   737/748
(98 %)
11 diff
(98.6 %id)
BI764257 pooled colon, kidney, stomach .a 3360 to 4181 1 to 821       821/825
(99 %)
5 diff
(99.4 %id)
TI_57148697   .a 3360 to 4181 30 to 850       821/854
(96 %)
11 diff
(98.8 %id)
CD513381 brain, Pituitary .a 3412 to 4264 1 to 859       859/877
(97 %)
21 diff
(97.7 %id)
BF798371 colon_ins .a 3424 to 3618 199 to 1     Submitted on the opposite strand 197/205
(96 %)
13 diff
(93.7 %id)
BQ318537 colon .a 3424 to 3848 493 to 69       425/499
(85 %)
3 diff
(99.4 %id)
AW373377 breast .a 3433 to 3683 254 to 4       251/254
(98 %)
6 diff
(97.7 %id)
AW373386 breast .a 3433 to 3699 271 to 2       270/271
(99 %)
5 diff
(98.2 %id)
AW608793 pnet .a 3433 to 3675 250 to 1       250/250
(100 %)
22 diff
(91.2 %id)
AW875632 pnet .a 3433 to 3698 268 to 5       264/268
(98 %)
1 diff
(99.7 %id)
AW875735 pnet .a 3433 to 3700 268 to 1       268/268
(100 %)
2 diff
(99.3 %id)
AW937924 denis_drash .a 3433 to 3716 286 to 4     Submitted on the opposite strand 283/286
(98 %)
1 diff
(99.7 %id)
AW938001 denis_drash .a 3433 to 3716 286 to 4     Submitted on the opposite strand 283/286
(98 %)
1 diff
(99.7 %id)
AW875910 pnet .a 3434 to 3700 1 to 267       267/267
(100 %)
0 diff
(100 %id)
AA336304 endometrium .a 3441 to 3701 1 to 261       261/261
(100 %)
0 diff
(100 %id)
CU453301 epidermis .a 3441 to 4011 14 to 584       571/598
(95 %)
9 diff
(98.5 %id)
AW875603 pnet .a 3474 to 3689 225 to 10       216/269
(80 %)
12 diff
(95.6 %id)
EL954097 eyeball .a 3486 to 4081 1 to 596       596/596
(100 %)
8 diff
(98.7 %id)
BM555688 duodenal adenocarcinoma, cell line, small intestine .a 3573 to 4529 13 to 976       964/1021
(94 %)
20 diff
(98.1 %id)
BM721730 eye, fetal eye .a 3608 to 4062 1 to 455       455/455
(100 %)
0 diff
(100 %id)
ES312171 frontal balding hair, skin .a 3633 to 3800 1 to 168       168/168
(100 %)
0 diff
(100 %id)
BE151050 head_neck .a 3637 to 3914 311 to 32     Submitted on the opposite strand 280/322
(86 %)
7 diff
(97.9 %id)
CX785686 human embryonic stem cells .a 3644 to 4475 1 to 832       832/832
(100 %)
0 diff
(100 %id)
TI_57192410   .a 3690 to 4373 104 to 786       683/696
(98 %)
7 diff
(99.0 %id)
TI_57173511   .a 3711 to 4454 1 to 724       728/724
(100 %)
29 diff
(96.0 %id)
FN116698 breast carcinoma .a 3716 to 3816 1 to 98       98/99
(98 %)
4 diff
(96.0 %id)
BF751364 breast_normal .a 3725 to 3903 20 to 198       183/204
(89 %)
9 diff
(95.6 %id)
FN059742 breast carcinoma .a 3736 to 3815 1 to 80       80/80
(100 %)
3 diff
(96.3 %id)
BQ354802 head_neck .a 3763 to 4305 553 to 8       546/553
(98 %)
0 diff
(100 %id)
AW835406 leiomios .a 3775 to 4283 522 to 11       512/522
(98 %)
1 diff
(99.9 %id)
AW835421 leiomios .a 3787 to 4255 470 to 2       469/470
(99 %)
0 diff
(100 %id)
AW835407 leiomios .a 3810 to 4270 461 to 2       460/461
(99 %)
0 diff
(100 %id)
CD677559 eye, Trabecular meshwork .a 3815 to 4462 1 to 648       648/648
(100 %)
0 diff
(100 %id)
FN121345 breast carcinoma .a 3846 to 3939 95 to 2     Submitted on the opposite strand 94/97
(96 %)
0 diff
(100 %id)
FN127152 breast carcinoma .a 3846 to 3930 84 to 1     Submitted on the opposite strand 84/91
(92 %)
1 diff
(99.0 %id)
DT217739 brain .a 3891 to 4458 1 to 568       568/568
(100 %)
0 diff
(100 %id)
CN304881 embryonic stem cells, cell lines H1, H7, andH9 .a 3901 to 4038 1 to 138       138/138
(100 %)
0 diff
(100 %id)
BF229323 colon_ins .a 3934 to 4233 301 to 1       301/303
(99 %)
5 diff
(98.4 %id)
AA442736   .a 3977 to 4161 1 to 185       185/185
(100 %)
0 diff
(100 %id)
TI_151711024   .a 4295 to 4978 773 to 93   AAA   681/683
(99 %)
7 diff
(99.0 %id)
AU149058   .a 4420 to 4978 556 to 1       556/561
(99 %)
12 diff
(97.9 %id)
AU154977 ovary, tumor tissue .a 4430 to 4978 548 to 1       548/549
(99 %)
7 diff
(98.8 %id)
AU148549   .a 4432 to 4978 545 to 1       545/550
(99 %)
11 diff
(98.0 %id)
AU154702   .a 4475 to 4973 498 to 1       498/498
(100 %)
4 diff
(99.2 %id)
BJ991660 hepatoblastoma .a 4479 to 4944 467 to 2       466/467
(99 %)
0 diff
(100 %id)
AU150163   .a 4512 to 4980 471 to 2       470/471
(99 %)
0 diff
(100 %id)
DB319752   .a 4520 to 4973 455 to 1   tiling clone,   455/458
(99 %)
7 diff
(98.5 %id)
BE301784 cervix .a 4520 to 4974 458 to 4       455/458
(99 %)
0 diff
(100 %id)
AU146374 whole embryo, mainly body .a 4580 to 4978 399 to 1       399/401
(99 %)
1 diff
(99.8 %id)
BM677317 eye, fetal eye .a 4582 to 4988 425 to 19   tiling clone, AAA   407/407
(100 %)
4 diff
(99.1 %id)
F05053 brain, total brain .a 4659 to 4973 315 to 1       315/315
(100 %)
1 diff
(99.7 %id)
NM_013436.3   .b 1 to 4619 1 to 4619 exact RefSeq,   4619/4619
(100 %)
6 diff
(99.9 %id)
BI666831 brain, hypothalamus .b 27 to 689 1 to 666   tiling clone,   666/679
(98 %)
22 diff
(96.8 %id)
TI_44343024   .b 30 to 689 85 to 747       663/760
(87 %)
19 diff
(97.5 %id)
BM454842 leiomyosarcoma, uterus .b 35 to 621 41 to 629       589/1267
(46 %)
13 diff
(99.0 %id)
DB472663 hippocampus .b 55 to 525 1 to 471       471/481
(97 %)
5 diff
(99.0 %id)
BC015025 Uterus, leiomyosarcoma .b 132 to 4603 1 to 4472 exact tiling clone, available from MGC, AAA   4472/4472
(100 %)
0 diff
(100 %id)
BE883765 leiomyosarcoma, uterus .b 153 to 879 1 to 734       734/1015
(72 %)
24 diff
(97.7 %id)
AK292914 trachea .b 154 to 3871 1 to 3718 exact     3718/3718
(100 %)
2 diff
(100.0 %id)
DB227008 trachea .b 155 to 737 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
CB988979 Human Placenta, placenta .b 176 to 774 28 to 632       605/811
(74 %)
24 diff
(97.1 %id)
CB990244 Human Placenta, placenta .b 176 to 767 28 to 626       599/856
(69 %)
16 diff
(98.2 %id)
DB455789 testis .b 179 to 654 1 to 476       476/476
(100 %)
4 diff
(99.2 %id)
BU161695 eye, retinoblastoma .b 210 to 771 1 to 563       563/1178
(47 %)
9 diff
(99.3 %id)
CN304903 embryonic stem cells, cell lines H1, H7, andH9 .b 319 to 1090 1 to 773       773/773
(100 %)
5 diff
(99.4 %id)
CN304891 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 323 to 977 1 to 655       655/655
(100 %)
4 diff
(99.4 %id)
DB063309 testis .b 338 to 891 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
TI_44350584   .b 348 to 1125 119 to 907       789/966
(81 %)
22 diff
(97.8 %id)
BI086690 cervix .b 349 to 900 1 to 551       551/551
(100 %)
4 diff
(99.3 %id)
BI561619 testis .b 352 to 1125 1 to 785       785/844
(93 %)
20 diff
(97.7 %id)
DB075899 testis .b 358 to 914 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA459860 tongue, tumor tissue .b 364 to 934 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
AB014509 brain .b 384 to 4601 1 to 4218 exact     4218/4218
(100 %)
4 diff
(100.0 %id)
BT007033   .b 403 to 3788 1 to 3386       3386/3387
(99 %)
1 diff
(100.0 %id)
CN304900 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 404 to 839 1 to 436       436/436
(100 %)
2 diff
(99.6 %id)
AA223890 brain, neuroepithelial cells .b 414 to 599 185 to 1       185/186
(99 %)
4 diff
(97.9 %id)
CN304883 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 424 to 651 1 to 228       228/228
(100 %)
1 diff
(99.6 %id)
DA724226   .b 432 to 976 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
M78461   .b 470 to 867 399 to 1       399/399
(100 %)
2 diff
(99.5 %id)
CN304894 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 483 to 693 1 to 211       211/211
(100 %)
2 diff
(99.1 %id)
DB229810 trachea .b 497 to 1088 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
AA307472 colon .b 507 to 1074 1 to 568       568/568
(100 %)
0 diff
(100 %id)
AW960339   .b 508 to 1088 1 to 581       581/582
(99 %)
13 diff
(97.8 %id)
CA453300 mixed (pool of 40 RNAs) .c 1 to 723 1 to 727 L164F F165V T166Y I167X H168S ... tiling clone,   727/779
(93 %)
12 diff
(98.5 %id)
W52747 Pancreas, pancreatic islet .d 1 to 492 1 to 495 V115R Q116A N117E L118S S119F ... tiling clone,   495/508
(97 %)
8 diff
(98.5 %id)
DA217929 brain .e 1 to 558 2 to 560   tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
DA850010 placenta .e 86 to 643 2 to 560 L45X R46* tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
BM833719 stomach .f 1 to 615 14 to 628   tiling clone,   615/615
(100 %)
0 diff
(100 %id)
DA158914 amygdala .f 260 to 767 2 to 512 E53G I54N R55T F56L T57Y ... tiling clone, capped   511/511
(100 %)
3 diff
(99.5 %id)
Z36860   .g-u 1 to 341 1 to 341 exact tiling clone,   341/341
(100 %)
0 diff
(100 %id)
CB177444 Pancreas, Purified pancreatic islet .h 1 to 213 1 to 213   tiling clone, fully sequenced,   213/213
(100 %)
3 diff
(98.6 %id)
CA773895 Pancreas, Purified pancreatic islet .h 11 to 219 1 to 209   fully sequenced,   209/209
(100 %)
0 diff
(100 %id)
CB177818 Pancreas, Purified pancreatic islet .h 183 to 733 551 to 1   tiling clone, fully sequenced,   551/551
(100 %)
1 diff
(99.9 %id)
BU069167 Pancreas, Purified pancreatic islet .h 189 to 733 545 to 1   tiling clone, fully sequenced,   545/545
(100 %)
1 diff
(99.9 %id)
DB159658 thymus .i 1 to 586 2 to 587 exact tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
DB161876 thymus .i 97 to 664 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB259935 uterus .i 568 to 1140 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
AL119168 amygdala .i 672 to 998 1 to 327       327/327
(100 %)
0 diff
(100 %id)
CD723488 eye, lacrimal gland .i 1907 to 2531 1 to 625   tiling clone,   625/625
(100 %)
0 diff
(100 %id)
CD723570 eye, lacrimal gland .i 1907 to 2539 1 to 634       634/634
(100 %)
1 diff
(99.9 %id)
BF836321 head_neck .i 2403 to 2656 266 to 11     Submitted on the opposite strand 256/269
(95 %)
0 diff
(100 %id)
TI_154110353   .i 2406 to 3334 985 to 63   AAA   923/949
(97 %)
20 diff
(97.9 %id)
BU164186 epithelioid carcinoma, Pancreas .i 2431 to 3304 1 to 881   tiling clone,   881/882
(99 %)
13 diff
(98.6 %id)
TI_149312052   .i 2452 to 3329 963 to 95   AAA   869/975
(89 %)
12 diff
(98.8 %id)
BQ314805 denis_drash .i 2462 to 2642 196 to 16       181/196
(92 %)
0 diff
(100 %id)
TI_154105528   .i 2464 to 3334 935 to 84   AAA   852/932
(91 %)
24 diff
(97.5 %id)
TI_154093418   .i 2471 to 3334 948 to 99   AAA   850/966
(87 %)
19 diff
(98.1 %id)
FN136938 breast carcinoma .i 2472 to 2568 98 to 1     Submitted on the opposite strand 98/100
(98 %)
1 diff
(99.0 %id)
TI_57243519   .i 2474 to 3196 32 to 751       720/751
(95 %)
6 diff
(99.3 %id)
TI_159681449   .i 2481 to 3334 917 to 80   AAA   838/1009
(83 %)
40 diff
(96.1 %id)
FN143515 breast carcinoma .i 2506 to 2617 1 to 109       109/114
(95 %)
4 diff
(96.5 %id)
TI_149297572   .i 2524 to 3334 860 to 57   AAA   804/947
(84 %)
8 diff
(99.2 %id)
TI_149308072   .i 2552 to 3334 858 to 93   AAA   766/931
(82 %)
20 diff
(97.9 %id)
TI_149306262   .i 2553 to 3329 860 to 91   AAA   770/953
(80 %)
17 diff
(98.3 %id)
FN114127 breast carcinoma .i 2557 to 2630 1 to 75       75/76
(98 %)
2 diff
(97.4 %id)
FN155300 breast carcinoma .i 2574 to 2696 123 to 1     Submitted on the opposite strand 123/123
(100 %)
0 diff
(100 %id)
TI_149275686   .i 2582 to 3334 834 to 85   AAA   750/1002
(74 %)
13 diff
(98.8 %id)
BQ349247 head_neck .i 2591 to 3046 576 to 121       456/577
(79 %)
0 diff
(100 %id)
TI_154102349   .i 2591 to 3334 814 to 79   AAA   736/782
(94 %)
22 diff
(97.2 %id)
TI_149297922   .i 2607 to 3329 801 to 85   AAA   717/920
(77 %)
7 diff
(99.3 %id)
TI_149306320   .i 2608 to 3334 805 to 87   AAA   719/922
(77 %)
37 diff
(96.0 %id)
AW606730 head_neck .i 2621 to 3123 508 to 5       504/510
(98 %)
0 diff
(100 %id)
FN091139 breast carcinoma .i 2640 to 2745 107 to 1     Submitted on the opposite strand 107/107
(100 %)
1 diff
(99.1 %id)
BE699193 nervous_normal .i 2643 to 2776 135 to 1       135/135
(100 %)
2 diff
(98.6 %id)
FN048085 breast carcinoma .i 2653 to 2731 80 to 1     Submitted on the opposite strand 80/80
(100 %)
1 diff
(98.8 %id)
FN166682 breast carcinoma .i 2658 to 2740 1 to 86       86/86
(100 %)
6 diff
(93.1 %id)
CA314471 Human Lung Epithelial cells, lung .i 2659 to 3371 10 to 722   tiling clone, Submitted on the opposite strand 713/722
(98 %)
6 diff
(99.2 %id)
BE159407 head_neck .i 2663 to 3128 473 to 10     Submitted on the opposite strand 464/473
(98 %)
0 diff
(100 %id)
AA496447 ovarian tumor, ovary .i 2669 to 2928 1 to 260     Submitted on the opposite strand 260/260
(100 %)
1 diff
(99.7 %id)
TI_159715134   .i 2782 to 3334 641 to 89   AAA   553/1050
(52 %)
6 diff
(99.5 %id)
BQ340308 nervous_normal .i 2792 to 3192 401 to 1       401/401
(100 %)
3 diff
(99.3 %id)
TI_149279017   .i 2798 to 3338 625 to 85   AAA   541/1132
(47 %)
2 diff
(99.9 %id)
BF090052 nervous_normal .i 2806 to 3194 413 to 27       387/413
(93 %)
0 diff
(100 %id)
AI811671 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .i 2826 to 3335 510 to 1   tiling clone,   510/510
(100 %)
0 diff
(100 %id)
AI333666 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 2847 to 3335 489 to 1       489/489
(100 %)
0 diff
(100 %id)
CB051463 Prostate .i 2849 to 3303 465 to 10     Submitted on the opposite strand 456/466
(97 %)
0 diff
(100 %id)
BI055060 placenta_normal .i 2858 to 3101 248 to 6       243/262
(92 %)
0 diff
(100 %id)
DB541418 hippocampus .i 2871 to 3329 1 to 460     Submitted on the opposite strand 460/460
(100 %)
6 diff
(98.7 %id)
DB351586 uterus .i 2876 to 3334 460 to 1       460/460
(100 %)
7 diff
(98.5 %id)
AW380971 head_neck .i 2879 to 3134 256 to 1       256/256
(100 %)
3 diff
(98.9 %id)
DB552988 hippocampus .i 2880 to 3329 1 to 450     Submitted on the opposite strand 450/450
(100 %)
3 diff
(99.4 %id)
AA483070 Ewing's sarcoma .i 2892 to 3248 385 to 29       357/385
(92 %)
0 diff
(100 %id)
C05854   .i 2894 to 3334 462 to 12   AAA   451/457
(98 %)
15 diff
(96.8 %id)
DB556507 hypothalamus .i 2911 to 3334 1 to 424     Submitted on the opposite strand 424/424
(100 %)
1 diff
(99.8 %id)
AW168131 serous papillary carcinoma, high grade, 2pooled tumors, uterus .i 2919 to 3334 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AA580371 colon, colon tumor .i 2921 to 3333 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AA664706 alveolar rhabdomyosarcoma .i 2929 to 3330 410 to 9       402/410
(98 %)
0 diff
(100 %id)
DN916230   .i 2936 to 3328 394 to 3       392/394
(99 %)
0 diff
(100 %id)
AA496507 ovarian tumor, ovary .i 2936 to 3307 372 to 1     Submitted on the opposite strand 372/372
(100 %)
1 diff
(99.8 %id)
FN153143 breast carcinoma .i 2964 to 3075 112 to 1     Submitted on the opposite strand 112/112
(100 %)
0 diff
(100 %id)
AA862525 Kidney .i 2980 to 3334 355 to 1       355/355
(100 %)
0 diff
(100 %id)
TI_149304619   .i 2986 to 3329 433 to 90   AAA   344/971
(35 %)
5 diff
(99.5 %id)
BE674464 carcinoid, lung .i 3001 to 3307 1 to 307     Submitted on the opposite strand 307/307
(100 %)
0 diff
(100 %id)
FN146429 breast carcinoma .i 3018 to 3120 1 to 102       102/102
(100 %)
2 diff
(98.1 %id)
BQ027326 mixed .i 3019 to 3329 329 to 19   AAA   311/311
(100 %)
0 diff
(100 %id)
FN171712 breast carcinoma .i 3022 to 3107 1 to 86       86/86
(100 %)
3 diff
(96.6 %id)
EC465912 Prostate .i 3023 to 3120 1 to 98       98/98
(100 %)
0 diff
(100 %id)
AA483984 Ewing's sarcoma .i 3025 to 3329 332 to 28   AAA   305/305
(100 %)
1 diff
(99.7 %id)
AA852122 Bone, Hip .i 3030 to 3330 307 to 7       301/307
(98 %)
0 diff
(100 %id)
AI358607 serous papillary carcinoma, high grade, 2pooled tumors, uterus .i 3041 to 3339 299 to 1       299/299
(100 %)
0 diff
(100 %id)
FN046958 breast carcinoma .i 3064 to 3126 1 to 63       63/64
(98 %)
1 diff
(98.5 %id)
FN071625 breast carcinoma .i 3068 to 3134 1 to 65       65/66
(98 %)
3 diff
(95.5 %id)
AA659098 Ewing's sarcoma .i 3076 to 3259 184 to 1       184/190
(96 %)
0 diff
(100 %id)
BY999242   .i 3078 to 3330 1 to 253     Submitted on the opposite strand 253/255
(99 %)
2 diff
(99.3 %id)
AA730663 Ewing's sarcoma .i 3079 to 3330 254 to 2       253/260
(97 %)
0 diff
(100 %id)
BU507260 leiomyosarcoma, uterus .i 3192 to 3334 1 to 143   AAA   143/143
(100 %)
0 diff
(100 %id)
CA335484 posterior tongue (pooled) .i 3197 to 3334 1 to 138   AAA   138/138
(100 %)
0 diff
(100 %id)
FN100542 breast carcinoma .i 3204 to 3282 1 to 77       77/87
(88 %)
3 diff
(96.6 %id)
DA365814 subthalamic nucleus .j 1 to 572 2 to 574 L32X L33T G34R Y36I G37W ... tiling clone, capped   573/573
(100 %)
2 diff
(99.7 %id)
CB127971 cervix, Uterine .k 1 to 612 1 to 612 exact tiling clone,   612/612
(100 %)
0 diff
(100 %id)
FN092282 breast carcinoma .k 321 to 397 77 to 1     Submitted on the opposite strand 77/84
(91 %)
3 diff
(96.5 %id)
BX496748 Liver .l-u 1 to 523 1 to 522 S39V L40S I41F L42X I43F ... tiling clone,   522/522
(100 %)
6 diff
(98.9 %id)
BE147793 head_neck .m-u 1 to 515 10 to 524 H74D tiling clone,   515/530
(97 %)
7 diff
(98.7 %id)
AK001291   Gene NCKAP1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB089271 testis Gene NCKAP1, variant not shown       capped This clone was ignored    
DB341310 testis Gene NCKAP1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k, .l-u, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI