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Gene MYCNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
259 supporting clones for gene MYCN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
M55330 placenta .a 1 to 1382 1 to 1380   tiling clone,   1380/1380
(100 %)
6 diff
(99.6 %id)
BX331271 Neuroblastoma Cot 10-normalized .a 301 to 948 1 to 647   tiling clone,   647/647
(100 %)
1 diff
(99.9 %id)
BF347441 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1354 to 1968 1 to 624       624/875
(71 %)
29 diff
(96.7 %id)
BU594706 mixed (pool of 40 RNAs) .a 1358 to 1859 1 to 509       509/914
(55 %)
11 diff
(98.8 %id)
CN255286 embryonic stem cells, DMSO-treated H9 cellline .a 1369 to 1669 1 to 301       301/301
(100 %)
0 diff
(100 %id)
BG396613 eye, retinoblastoma .a 1372 to 1759 1 to 394       394/394
(100 %)
15 diff
(96.2 %id)
CN255282 embryonic stem cells, cell lines H1, H7, andH9 .a 1375 to 1938 1 to 564   tiling clone,   564/564
(100 %)
3 diff
(99.5 %id)
BF311283 brain, neuroblastoma .a 1382 to 1927 1 to 544       544/547
(99 %)
21 diff
(96.2 %id)
BX354409 Neuroblastoma Cot 25-normalized .a 1384 to 2276 1 to 882       882/886
(99 %)
15 diff
(98.4 %id)
CN255283 embryonic stem cells, cell lines H1, H7, andH9 .a 1400 to 1863 1 to 464       464/464
(100 %)
0 diff
(100 %id)
CN255279 embryonic stem cells, cell lines H1, H7, andH9 .a 1439 to 1871 1 to 433       433/433
(100 %)
0 diff
(100 %id)
BC002712 Brain, neuroblastoma .a 1487 to 3926 1 to 2440   tiling clone, available from MGC, AAA   2440/2440
(100 %)
0 diff
(100 %id)
DA618834   .a 2537 to 3091 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BU846292 ovary, teratocarcinoma, cell line .a 2538 to 3450 1 to 924       924/926
(99 %)
11 diff
(98.9 %id)
CX872957 embryonic stem .a 2541 to 2771 1 to 231       231/231
(100 %)
1 diff
(99.6 %id)
BE784037 eye, retinoblastoma .a 2556 to 3331 1 to 780       780/850
(91 %)
24 diff
(97.2 %id)
BM471591 eye, retinoblastoma .a 2569 to 3467 25 to 932       908/1064
(85 %)
11 diff
(99.0 %id)
BE779212 eye, retinoblastoma .a 2577 to 3322 1 to 749       749/756
(99 %)
13 diff
(98.3 %id)
BE382468 brain, neuroblastoma .a 2583 to 3308 1 to 730       730/765
(95 %)
17 diff
(97.8 %id)
BM925834 brain .a 2583 to 3585 10 to 1021       1012/1071
(94 %)
6 diff
(99.5 %id)
BQ068458 brain, neuroblastoma, cell line .a 2589 to 3494 1 to 915       915/967
(94 %)
21 diff
(97.9 %id)
CR624442 Neuroblastoma Cot 25-normalized .a 2617 to 3903 1 to 1287       1287/1287
(100 %)
0 diff
(100 %id)
BX394335 Neuroblastoma Cot 25-normalized .a 2617 to 3513 1 to 898   fully sequenced,   898/898
(100 %)
3 diff
(99.7 %id)
CD664544   .a 2635 to 2929 297 to 1       297/305
(97 %)
4 diff
(98.7 %id)
CN255285 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2641 to 3271 1 to 631       631/633
(99 %)
2 diff
(99.7 %id)
CR599077 fetal brain .a 2660 to 3929 1 to 1270       1270/1270
(100 %)
0 diff
(100 %id)
BX460336 brain, fetal brain .a 2660 to 3686 1 to 1013       1013/1013
(100 %)
22 diff
(97.9 %id)
BQ069271 brain, neuroblastoma, cell line .a 2696 to 3680 1 to 995       995/1045
(95 %)
33 diff
(96.9 %id)
CN255284 embryonic stem cells, DMSO-treated H9 cellline .a 2718 to 3369 1 to 653       653/653
(100 %)
7 diff
(99.0 %id)
BG008935 placenta_normal .a 2725 to 3269 546 to 1       546/546
(100 %)
4 diff
(99.3 %id)
CN255278 embryonic stem cells, DMSO-treated H9 cellline .a 2744 to 3451 1 to 708       708/708
(100 %)
1 diff
(99.9 %id)
CN255281 embryonic stem cells, DMSO-treated H9 cellline .a 2749 to 3077 1 to 329       329/329
(100 %)
0 diff
(100 %id)
BF307826 muscle, rhabdomyosarcoma .a 2757 to 3474 1 to 714       714/950
(75 %)
36 diff
(96.3 %id)
BF203893 muscle, rhabdomyosarcoma .a 2761 to 3480 1 to 716       716/894
(80 %)
12 diff
(98.7 %id)
BE783580 eye, retinoblastoma .a 2769 to 3371 1 to 604       604/604
(100 %)
2 diff
(99.7 %id)
BE250155 muscle, rhabdomyosarcoma .a 2777 to 3522 1 to 742   fully sequenced,   742/742
(100 %)
7 diff
(99.1 %id)
BF315566 brain, neuroblastoma .a 2788 to 3483 1 to 706       706/873
(80 %)
22 diff
(97.5 %id)
BM452019 eye, retinoblastoma .a 2794 to 3604 828 to 18     Submitted on the opposite strand 811/886
(91 %)
0 diff
(100 %id)
CN255280 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2842 to 3293 1 to 452       452/452
(100 %)
1 diff
(99.8 %id)
BE261770 brain, neuroblastoma .a 2852 to 3556 1 to 702       702/713
(98 %)
27 diff
(96.3 %id)
BG395093 eye, retinoblastoma .a 2862 to 3616 1 to 743       743/1011
(73 %)
21 diff
(98.0 %id)
CX783208 human embryonic stem cells .a 2882 to 3647 1 to 767   fully sequenced,   767/767
(100 %)
1 diff
(99.9 %id)
BI198102 brain, neuroblastoma .a 2885 to 3549 1 to 685       685/1067
(64 %)
29 diff
(97.3 %id)
CR614612 neuroblastoma .a 2891 to 3903 1 to 1013       1013/1013
(100 %)
0 diff
(100 %id)
AL516955 brain, neuroblastoma, neuroblastoma cells .a 2891 to 3728 1 to 838       838/838
(100 %)
11 diff
(98.7 %id)
BG472516 eye, retinoblastoma .a 2895 to 3464 1 to 572       572/572
(100 %)
8 diff
(98.7 %id)
BM460246 eye, retinoblastoma .a 2935 to 3892 966 to 1     Submitted on the opposite strand 966/1107
(87 %)
29 diff
(97.4 %id)
CD664543   .a 2974 to 3355 1 to 381       381/381
(100 %)
4 diff
(99.0 %id)
BF316945 brain, neuroblastoma .a 2989 to 3786 1 to 784       784/787
(99 %)
25 diff
(96.9 %id)
BE793986 lung, small cell carcinoma .a 2992 to 3846 1 to 866       866/902
(96 %)
43 diff
(95.3 %id)
BE790619 lung, small cell carcinoma .a 2993 to 3774 1 to 778       778/780
(99 %)
9 diff
(98.9 %id)
W03736 lung .a 2997 to 3455 1 to 466       466/468
(99 %)
10 diff
(97.9 %id)
CD664553   .a 3001 to 3517 517 to 1       517/518
(99 %)
2 diff
(99.7 %id)
BE780443 eye, retinoblastoma .a 3002 to 3762 1 to 751       751/796
(94 %)
27 diff
(96.7 %id)
TI_149309532   .a 3015 to 3926 988 to 87   AAA   902/964
(93 %)
18 diff
(98.2 %id)
BU501633 brain, neuroblastoma, cell line .a 3019 to 3798 1 to 786       786/949
(82 %)
21 diff
(97.8 %id)
DT216942 brain .a 3020 to 3692 1 to 673       673/673
(100 %)
3 diff
(99.6 %id)
CD664549   .a 3024 to 3503 486 to 7       480/486
(98 %)
0 diff
(100 %id)
CD664542   .a 3037 to 3517 481 to 1       481/488
(98 %)
6 diff
(98.8 %id)
CD664547   .a 3060 to 3517 457 to 1       457/457
(100 %)
2 diff
(99.6 %id)
BE313058 brain, neuroblastoma .a 3062 to 3747 1 to 677       677/764
(88 %)
26 diff
(96.6 %id)
BE259809 brain, neuroblastoma .a 3062 to 3663 1 to 628       628/631
(99 %)
38 diff
(94.0 %id)
CD664548   .a 3066 to 3507 451 to 11       441/451
(97 %)
0 diff
(100 %id)
BM718785 eye, fetal eye .a 3068 to 3337 21 to 291   fully sequenced,   271/291
(93 %)
2 diff
(99.4 %id)
CD664546   .a 3088 to 3517 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
BU173228 eye, retinoblastoma .a 3089 to 3926 888 to 46   AAA Submitted on the opposite strand 843/843
(100 %)
17 diff
(98.0 %id)
BU953800 mixed (pool of 40 RNAs) .a 3097 to 3578 1 to 482       482/853
(56 %)
13 diff
(98.5 %id)
BI200043 brain, neuroblastoma .a 3099 to 3586 1 to 489       489/490
(99 %)
5 diff
(99.0 %id)
AW248262 lung, small cell carcinoma .a 3100 to 3644 5 to 549   fully sequenced,   545/549
(99 %)
6 diff
(99.0 %id)
N57026 placenta .a 3102 to 3313 1 to 212       212/212
(100 %)
0 diff
(100 %id)
BU167271 eye, retinoblastoma .a 3125 to 3920 831 to 23   AAA Submitted on the opposite strand 809/846
(95 %)
15 diff
(98.3 %id)
CX755709 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3146 to 3926 791 to 20   AAA   772/807
(95 %)
12 diff
(98.6 %id)
CX165841 human embryonic stem cells differentiated toan early endodermal cell type .a 3151 to 3928 783 to 6     Submitted on the opposite strand 778/783
(99 %)
0 diff
(100 %id)
AA101678 lung, lung carcinoma .a 3160 to 3592 1 to 433     Submitted on the opposite strand 433/433
(100 %)
4 diff
(99.1 %id)
CX787814 human embryonic stem cells .a 3189 to 3926 764 to 27   AAA Submitted on the opposite strand 738/738
(100 %)
0 diff
(100 %id)
CV814778 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3189 to 3929 760 to 19     Submitted on the opposite strand 742/760
(97 %)
0 diff
(100 %id)
BF310184 brain, neuroblastoma .a 3201 to 3937 1 to 720   AAA   720/903
(79 %)
34 diff
(96.3 %id)
AA094353   .a 3205 to 3425 1 to 220       220/220
(100 %)
4 diff
(98.2 %id)
CX752426 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3206 to 3926 742 to 22   AAA   721/725
(99 %)
3 diff
(99.6 %id)
BU687918 lung .a 3226 to 3926 719 to 19   AAA   701/701
(100 %)
0 diff
(100 %id)
BX098049 whole brain .a 3242 to 3780 540 to 2     Submitted on the opposite strand 539/540
(99 %)
0 diff
(100 %id)
CV810498 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3257 to 3936 710 to 31   AAA Submitted on the opposite strand 680/680
(100 %)
9 diff
(98.7 %id)
CX756476 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3261 to 3926 693 to 34   AAA   660/810
(81 %)
21 diff
(97.5 %id)
BU742426 eye, fetal eye .a 3307 to 3926 636 to 18   fully sequenced, AAA   619/619
(100 %)
0 diff
(100 %id)
BM475394 eye, retinoblastoma .a 3319 to 3925 633 to 13     Submitted on the opposite strand 621/1217
(51 %)
0 diff
(100 %id)
BQ424783 eye, retinoblastoma .a 3322 to 3926 672 to 55   AAA Submitted on the opposite strand 618/801
(77 %)
29 diff
(96.4 %id)
R52866 whole brain .a 3353 to 3780 436 to 1     Submitted on the opposite strand 436/436
(100 %)
9 diff
(98.0 %id)
AI962624 pooled germ cell tumors .a 3373 to 3937 568 to 4       565/568
(99 %)
0 diff
(100 %id)
BF592778 pooled germ cell tumors .a 3386 to 3937 555 to 4       552/555
(99 %)
0 diff
(100 %id)
BX458224 neuroblastoma .a 3388 to 3928 1 to 541       541/541
(100 %)
0 diff
(100 %id)
AW246671 lung, small cell carcinoma .a 3399 to 3926 538 to 11   AAA   528/528
(100 %)
0 diff
(100 %id)
BE313270 brain, neuroblastoma .a 3399 to 3918 1 to 517       517/700
(73 %)
7 diff
(99.0 %id)
AI652577 pooled germ cell tumors .a 3408 to 3926 519 to 1       519/519
(100 %)
3 diff
(99.5 %id)
AW055194 brain, glioblastoma (pooled) .a 3409 to 3925 517 to 1       517/517
(100 %)
0 diff
(100 %id)
BQ007228 placenta .a 3409 to 3926 535 to 18   AAA   518/518
(100 %)
2 diff
(99.7 %id)
BI197770 brain, neuroblastoma .a 3410 to 3891 1 to 509       509/823
(61 %)
9 diff
(99.0 %id)
AW249565 lung, small cell carcinoma .a 3417 to 3926 520 to 11   AAA   510/510
(100 %)
0 diff
(100 %id)
AI492424 Kidney .a 3421 to 3929 511 to 3       509/511
(99 %)
0 diff
(100 %id)
BU955696 mixed (pool of 40 RNAs) .a 3421 to 3918 1 to 498       498/502
(99 %)
2 diff
(99.7 %id)
AA101681 lung, lung carcinoma .a 3426 to 3846 12 to 435       424/437
(97 %)
5 diff
(98.9 %id)
AW246801 lung, small cell carcinoma .a 3434 to 3929 497 to 2       496/497
(99 %)
0 diff
(100 %id)
AI003077   .a 3436 to 3937 504 to 3       502/504
(99 %)
0 diff
(100 %id)
AI769993 Kidney .a 3445 to 3926 501 to 20   AAA   482/482
(100 %)
7 diff
(98.6 %id)
AI357268 pooled germ cell tumors .a 3447 to 3927 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AW594483 pooled germ cell tumors .a 3448 to 3929 482 to 1       482/482
(100 %)
0 diff
(100 %id)
AA548970 germ cell tumor .a 3452 to 3925 474 to 1       474/474
(100 %)
1 diff
(99.8 %id)
AA936627 pooled germ cell tumors .a 3452 to 3924 475 to 3       473/475
(99 %)
0 diff
(100 %id)
N29333 placenta .a 3459 to 3927 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
BX431589 brain, fetal brain .a 3465 to 3929 1 to 466       466/466
(100 %)
2 diff
(99.6 %id)
BI093021 cervix .a 3474 to 3926 1 to 452   AAA   452/452
(100 %)
1 diff
(99.8 %id)
AI094294 heart .a 3478 to 3929 454 to 3       452/454
(99 %)
0 diff
(100 %id)
BX394334 Neuroblastoma Cot 25-normalized .a 3483 to 3903 420 to 1   fully sequenced,   420/420
(100 %)
1 diff
(99.8 %id)
BE250438 muscle, rhabdomyosarcoma .a 3492 to 3877 397 to 1   fully sequenced,   397/397
(100 %)
5 diff
(98.8 %id)
AI433544 Kidney .a 3503 to 3928 426 to 1       426/426
(100 %)
0 diff
(100 %id)
AW013803   .a 3506 to 3927 439 to 18   AAA   422/422
(100 %)
4 diff
(99.1 %id)
AI049927   .a 3512 to 3937 427 to 2       426/427
(99 %)
0 diff
(100 %id)
AA778008 heart .a 3515 to 3935 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
AA960798 pooled .a 3519 to 3926 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BG396438 eye, retinoblastoma .a 3529 to 3926 2 to 397   AAA   396/397
(99 %)
6 diff
(98.5 %id)
AI962578 pooled germ cell tumors .a 3540 to 3929 391 to 2       390/391
(99 %)
0 diff
(100 %id)
AI560311 anaplastic oligodendroglioma, brain .a 3544 to 3926 382 to 1       382/382
(100 %)
1 diff
(99.8 %id)
AI039218   .a 3547 to 3929 388 to 6       383/388
(98 %)
0 diff
(100 %id)
BE348859 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 3549 to 3928 380 to 1       380/380
(100 %)
3 diff
(99.3 %id)
AW250065 lung, small cell carcinoma .a 3569 to 3926 368 to 11   AAA   358/358
(100 %)
6 diff
(98.4 %id)
AW245036 lung, small cell carcinoma .a 3614 to 3936 323 to 1   fully sequenced,   323/323
(100 %)
5 diff
(98.5 %id)
CX783135 human embryonic stem cells .a 3617 to 3920 333 to 30   fully sequenced, AAA   304/304
(100 %)
1 diff
(99.7 %id)
BU566633 mixed (pool of 40 RNAs) .a 3629 to 3930 1 to 302       302/337
(89 %)
3 diff
(99.2 %id)
N85461   .a 3670 to 3888 1 to 217       217/217
(100 %)
2 diff
(99.1 %id)
AW975372   .a 3673 to 3886 111 to 324       214/324
(66 %)
6 diff
(98.2 %id)
AA745003 Ewing's sarcoma .a 3673 to 3933 261 to 1       261/275
(94 %)
5 diff
(98.2 %id)
AA101677 lung, lung carcinoma .a 3700 to 3942 246 to 1   tiling clone, Submitted on the opposite strand 246/246
(100 %)
3 diff
(98.8 %id)
AA620376 lung, lung carcinoma .a 3713 to 3925 213 to 1       213/213
(100 %)
0 diff
(100 %id)
N73961 lung .a 3718 to 3926 209 to 1       209/209
(100 %)
0 diff
(100 %id)
W69163 heart .a 3726 to 3926 201 to 1       201/209
(96 %)
0 diff
(100 %id)
BU164652 eye, retinoblastoma .b 1 to 552 59 to 616   tiling clone,   558/1066
(52 %)
43 diff
(96.0 %id)
BQ940086 brain, neuroblastoma, cell line .b 51 to 583 78 to 618       541/1401
(38 %)
26 diff
(98.2 %id)
BU167361 eye, retinoblastoma .b 59 to 752 17 to 719       703/929
(75 %)
31 diff
(96.7 %id)
BX352906 Neuroblastoma Cot 10-normalized .b 60 to 1054 1 to 977       977/990
(98 %)
49 diff
(95.1 %id)
BX352882 Neuroblastoma Cot 10-normalized .b 72 to 914 1 to 832       832/848
(98 %)
45 diff
(94.7 %id)
BX332091 Neuroblastoma Cot 25-normalized .b 74 to 791 1 to 717   tiling clone,   717/728
(98 %)
2 diff
(99.8 %id)
BX353859 Neuroblastoma Cot 25-normalized .b 74 to 1078 1 to 990       990/990
(100 %)
20 diff
(98.0 %id)
NM_005378.4   .b 74 to 2685 1 to 2612 exact RefSeq,   2612/2613
(99 %)
5 diff
(99.9 %id)
BM564782 eye, retinoblastoma .b 75 to 866 1 to 799       799/1102
(72 %)
18 diff
(98.4 %id)
BQ071846 brain, neuroblastoma, cell line .b 75 to 684 1 to 617       617/1306
(47 %)
32 diff
(97.6 %id)
BQ956950 brain, neuroblastoma, cell line .b 75 to 560 1 to 494       494/1126
(43 %)
16 diff
(98.6 %id)
BU175980 eye, retinoblastoma .b 76 to 855 1 to 785       785/882
(89 %)
18 diff
(98.0 %id)
AF320053   .b 77 to 452 1 to 376       376/376
(100 %)
0 diff
(100 %id)
BX332178 Neuroblastoma Cot 25-normalized .b 78 to 1040 1 to 942       942/966
(97 %)
22 diff
(97.8 %id)
BX394732 Neuroblastoma Cot 25-normalized .b 78 to 1022 1 to 932       932/972
(95 %)
19 diff
(98.1 %id)
DA769399 brain .b 78 to 649 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BX333127 Neuroblastoma Cot 25-normalized .b 80 to 1021 1 to 932       932/935
(99 %)
32 diff
(96.6 %id)
BQ069987 brain, neuroblastoma, cell line .b 81 to 565 1 to 488       488/1181
(41 %)
59 diff
(95.1 %id)
BX393743 Neuroblastoma Cot 25-normalized .b 82 to 1093 1 to 983       983/983
(100 %)
29 diff
(97.1 %id)
BX393747 Neuroblastoma Cot 25-normalized .b 82 to 1092 1 to 992       992/997
(99 %)
26 diff
(97.4 %id)
BU176221 eye, retinoblastoma .b 89 to 884 1 to 801       801/931
(86 %)
25 diff
(97.4 %id)
BX393977 Neuroblastoma Cot 25-normalized .b 90 to 817 32 to 758       727/758
(95 %)
14 diff
(98.2 %id)
BX353508 Neuroblastoma Cot 25-normalized .b 95 to 815 39 to 757       719/757
(94 %)
8 diff
(99.0 %id)
BQ948907 brain, neuroblastoma, cell line .b 98 to 826 1 to 736       736/900
(81 %)
19 diff
(97.9 %id)
BM460291 eye, retinoblastoma .b 103 to 923 1 to 831       831/1019
(81 %)
21 diff
(98.0 %id)
BM466377 eye, retinoblastoma .b 103 to 339 1 to 237       237/237
(100 %)
1 diff
(99.6 %id)
BX352995 Neuroblastoma Cot 10-normalized .b 125 to 870 1 to 743       743/743
(100 %)
9 diff
(98.8 %id)
DR001469 fetal brain .b 246 to 870 9 to 634       626/634
(98 %)
6 diff
(99.1 %id)
BX353657 Neuroblastoma Cot 25-normalized .b 247 to 1092 1 to 830       830/834
(99 %)
10 diff
(98.9 %id)
BE382701 brain, neuroblastoma .b 252 to 816 1 to 565       565/565
(100 %)
0 diff
(100 %id)
BI196141 brain, neuroblastoma .b 257 to 872 1 to 637       637/747
(85 %)
62 diff
(91.8 %id)
TI_157598376   .b 272 to 1102 861 to 47       815/1018
(80 %)
0 diff
(100 %id)
BM474142 eye, retinoblastoma .b 297 to 896 1 to 600       600/1093
(54 %)
16 diff
(98.6 %id)
BX331778 Neuroblastoma Cot 25-normalized .b 298 to 1099 1 to 800       800/800
(100 %)
7 diff
(99.2 %id)
BX332119 Neuroblastoma Cot 25-normalized .b 315 to 1055 1 to 740       740/743
(99 %)
2 diff
(99.8 %id)
BG482303 choriocarcinoma, placenta .b 353 to 978 1 to 625       625/625
(100 %)
2 diff
(99.7 %id)
BT007384   .b 374 to 1768 1 to 1395 exact tiling clone,   1395/1395
(100 %)
0 diff
(100 %id)
AI871354 anaplastic oligodendroglioma, brain .b 464 to 1073 608 to 1       608/608
(100 %)
15 diff
(97.6 %id)
BX395443 Neuroblastoma Cot 50-normalized .b 510 to 1099 4 to 591       588/591
(99 %)
6 diff
(99.0 %id)
BF194988 fibrotheoma, ovary .b 530 to 1049 520 to 1       520/520
(100 %)
2 diff
(99.7 %id)
BQ881444 brain, neuroblastoma, cell line .b 564 to 1040 1 to 477       477/1028
(46 %)
8 diff
(99.3 %id)
AI884631 anaplastic oligodendroglioma, brain .b 585 to 1073 489 to 1       489/489
(100 %)
6 diff
(98.8 %id)
AW614373 Kidney .b 589 to 1073 487 to 1       487/487
(100 %)
17 diff
(96.6 %id)
AI084930 anaplastic oligodendroglioma, brain .b 608 to 1080 473 to 1       473/473
(100 %)
4 diff
(99.2 %id)
AI369661 anaplastic oligodendroglioma, brain .b 612 to 1072 461 to 1       461/461
(100 %)
9 diff
(98.1 %id)
BG059550 brain, glioblastoma without EGFR amplification .b 637 to 1089 450 to 1       450/460
(97 %)
21 diff
(95.5 %id)
BX332002 Neuroblastoma Cot 25-normalized .b 642 to 1096 357 to 809       755/809
(93 %)
75 diff
(90.8 %id)
AI498972 anaplastic oligodendroglioma, brain .b 645 to 1073 429 to 1       429/429
(100 %)
0 diff
(100 %id)
AI651784 pooled germ cell tumors .b 649 to 1099 451 to 1       451/451
(100 %)
1 diff
(99.8 %id)
AI498620 anaplastic oligodendroglioma, brain .b 650 to 1073 424 to 1       424/424
(100 %)
0 diff
(100 %id)
AI084105 anaplastic oligodendroglioma, brain .b 651 to 1081 431 to 1       431/431
(100 %)
1 diff
(99.8 %id)
AI494303 anaplastic oligodendroglioma, brain .b 656 to 1081 426 to 1       426/426
(100 %)
6 diff
(98.6 %id)
AI918139 anaplastic oligodendroglioma, brain .b 657 to 1099 445 to 1       445/445
(100 %)
3 diff
(99.4 %id)
AI869339 anaplastic oligodendroglioma, brain .b 678 to 1072 395 to 1       395/395
(100 %)
2 diff
(99.5 %id)
AI560372 anaplastic oligodendroglioma, brain .b 689 to 1073 387 to 1       387/448
(86 %)
19 diff
(95.8 %id)
AW028631 fibrotheoma, ovary .b 691 to 1070 387 to 4       384/389
(98 %)
0 diff
(100 %id)
AI360395 anaplastic oligodendroglioma, brain .b 697 to 1099 403 to 1       403/403
(100 %)
0 diff
(100 %id)
AI139573 placenta .b 729 to 1073 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
AI475045 anaplastic oligodendroglioma, brain .b 730 to 1073 349 to 1       349/363
(96 %)
14 diff
(96.2 %id)
AI220143 anaplastic oligodendroglioma, brain .b 740 to 1073 334 to 1       334/334
(100 %)
1 diff
(99.8 %id)
BM461586 eye, retinoblastoma .b 780 to 1090 1 to 311       311/311
(100 %)
0 diff
(100 %id)
BE382636 brain, neuroblastoma .b 809 to 1485 1 to 671       671/672
(99 %)
22 diff
(96.8 %id)
AI199136 anaplastic oligodendroglioma, brain .b 819 to 1097 279 to 1       279/279
(100 %)
1 diff
(99.7 %id)
AI869947 anaplastic oligodendroglioma, brain .b 868 to 1079 212 to 1       212/212
(100 %)
3 diff
(98.6 %id)
BU931538 ovary, teratocarcinoma, cell line .b 870 to 1490 1 to 625       625/978
(63 %)
21 diff
(97.9 %id)
AI283620 Kidney .b 903 to 1097 195 to 1       195/195
(100 %)
6 diff
(97.0 %id)
AI217667 pooled .b 927 to 1080 154 to 1       154/154
(100 %)
7 diff
(95.5 %id)
BE208619 lung, small cell carcinoma .b 932 to 1522 1 to 584       584/584
(100 %)
12 diff
(98.0 %id)
AW297647   .b 945 to 1079 154 to 20       135/154
(87 %)
0 diff
(100 %id)
AI560751 anaplastic oligodendroglioma, brain .b 1001 to 1062 73 to 12       62/73
(84 %)
0 diff
(100 %id)
BE382836 brain, neuroblastoma .b 1059 to 1607 1 to 556       556/556
(100 %)
15 diff
(97.4 %id)
BQ070922 brain, neuroblastoma, cell line .b 1080 to 2040 1 to 969   tiling clone, AAA   969/1006
(96 %)
26 diff
(97.5 %id)
AI242685 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1092 to 1514 1 to 423     Submitted on the opposite strand 423/423
(100 %)
0 diff
(100 %id)
BE257501 eye, retinoblastoma .b 1092 to 1668 1 to 576       576/576
(100 %)
3 diff
(99.5 %id)
BM011638 brain, neuroblastoma, cell line .b 1103 to 1952 1 to 855       855/858
(99 %)
26 diff
(97.0 %id)
TI_59380809   .b 1104 to 1952 104 to 957       854/857
(99 %)
25 diff
(97.1 %id)
AI937788 anaplastic oligodendroglioma, brain .b 1110 to 1429 1 to 320     Submitted on the opposite strand 320/320
(100 %)
0 diff
(100 %id)
AW002246 thymus, pooled .b 1110 to 1487 1 to 378     Submitted on the opposite strand 378/378
(100 %)
2 diff
(99.5 %id)
AI499031 anaplastic oligodendroglioma, brain .b 1116 to 1538 1 to 423     Submitted on the opposite strand 423/423
(100 %)
0 diff
(100 %id)
R66447 whole brain .b 1117 to 1576 9 to 478     Submitted on the opposite strand 470/516
(91 %)
37 diff
(92.9 %id)
AI937103 anaplastic oligodendroglioma, brain .b 1117 to 1555 1 to 440     Submitted on the opposite strand 440/440
(100 %)
3 diff
(99.4 %id)
AW005182 anaplastic oligodendroglioma, brain .b 1117 to 1710 1 to 594     Submitted on the opposite strand 594/595
(99 %)
6 diff
(99.0 %id)
CV811888 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1118 to 1839 1 to 722       722/722
(100 %)
1 diff
(99.9 %id)
AI368871 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 1120 to 1518 1 to 399     Submitted on the opposite strand 399/399
(100 %)
0 diff
(100 %id)
BU192825 eye, retinoblastoma .b 1125 to 1670 1 to 553       553/778
(71 %)
15 diff
(98.1 %id)
BF058630 fibrotheoma, ovary .b 1126 to 1468 1 to 345     Submitted on the opposite strand 345/345
(100 %)
3 diff
(99.2 %id)
DR760136 embryonic stem .b 1130 to 1834 1 to 705       705/705
(100 %)
0 diff
(100 %id)
R52824 whole brain .b 1131 to 1541 1 to 422     Submitted on the opposite strand 422/429
(98 %)
21 diff
(95.2 %id)
BQ882758 brain, neuroblastoma, cell line .b 1132 to 2041 1 to 918   tiling clone,   918/922
(99 %)
20 diff
(97.9 %id)
CD664545   .b 1133 to 1439 1 to 306       306/306
(100 %)
7 diff
(97.8 %id)
CD664550   .b 1133 to 1605 1 to 471       471/471
(100 %)
3 diff
(99.4 %id)
BI197783 brain, neuroblastoma .b 1136 to 1753 1 to 646       609/971
(62 %)
38 diff
(96.1 %id)
BM013305 brain, neuroblastoma, cell line .b 1136 to 1986 1 to 870       824/870
(94 %)
34 diff
(96.1 %id)
BQ069056 brain, neuroblastoma, cell line .b 1137 to 2032 1 to 903   tiling clone,   903/996
(90 %)
20 diff
(98.0 %id)
TI_59380269   .b 1137 to 1986 92 to 960       823/869
(94 %)
33 diff
(96.3 %id)
BE382649 brain, neuroblastoma .b 1160 to 1816 11 to 662       652/662
(98 %)
6 diff
(99.1 %id)
CX757538 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1169 to 1949 35 to 815   tiling clone, Submitted on the opposite strand 781/816
(95 %)
8 diff
(99.1 %id)
BF313082 brain, neuroblastoma .b 1170 to 1853 1 to 694       694/828
(83 %)
19 diff
(97.8 %id)
CX754857 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1176 to 1911 1 to 731     Submitted on the opposite strand 731/765
(95 %)
12 diff
(98.5 %id)
CX754786 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 1179 to 1828 1 to 648       648/837
(77 %)
15 diff
(98.3 %id)
BI198360 brain, neuroblastoma .b 1180 to 1702 1 to 531       531/1110
(47 %)
15 diff
(98.7 %id)
BE313573 brain, neuroblastoma .b 1200 to 1796 1 to 599       599/599
(100 %)
9 diff
(98.5 %id)
BQ440505 eye, retinoblastoma .b 1952 to 2032 763 to 851   tiling clone,   807/914
(88 %)
22 diff
(97.6 %id)
DA603308   .c-u 1 to 872 2 to 873 S107G Q180X tiling clone, capped   872/872
(100 %)
6 diff
(99.4 %id)
BX502724 Liver .c-u 56 to 508 1 to 453       453/453
(100 %)
2 diff
(99.6 %id)
BU186438 eye, retinoblastoma .c-u 252 to 1063 1 to 827   tiling clone,   827/930
(88 %)
26 diff
(97.3 %id)
BE537519 cervix .c-u 255 to 885 1 to 638       638/1142
(55 %)
29 diff
(97.5 %id)
BF206183 brain, neuroblastoma .c-u 257 to 1067 1 to 811   tiling clone,   811/1085
(74 %)
30 diff
(97.3 %id)
BE262464 brain, neuroblastoma .c-u 258 to 986 39 to 772   tiling clone,   734/775
(94 %)
28 diff
(96.4 %id)
BE262853 brain, neuroblastoma .c-u 263 to 1146 43 to 933   tiling clone,   891/1002
(88 %)
15 diff
(98.6 %id)
BE266737 lung, small cell carcinoma .c-u 279 to 952 1 to 686   tiling clone,   686/686
(100 %)
66 diff
(90.4 %id)
BF315760 brain, neuroblastoma .c-u 279 to 1062 1 to 789   tiling clone,   789/897
(87 %)
25 diff
(97.3 %id)
BF316757 brain, neuroblastoma .c-u 284 to 747 1 to 486       486/874
(55 %)
36 diff
(95.9 %id)
DA614082   .c-u 308 to 892 8 to 592   capped   585/591
(98 %)
6 diff
(99.0 %id)
BI196844 brain, neuroblastoma .d 1 to 439 2 to 439   tiling clone,   439/440
(99 %)
11 diff
(97.5 %id)
BF315360 brain, neuroblastoma .d 1 to 437 1 to 430   tiling clone,   430/430
(100 %)
8 diff
(98.2 %id)
BI194921 brain, neuroblastoma .d 1 to 609 1 to 625   tiling clone,   625/625
(100 %)
29 diff
(95.4 %id)
BE313916 brain, neuroblastoma .d 21 to 580 1 to 573   tiling clone,   573/574
(99 %)
21 diff
(96.4 %id)
BE382888 brain, neuroblastoma .d 21 to 639 1 to 631 R31G G34R F86L T87H I88H ... tiling clone,   631/669
(94 %)
37 diff
(94.5 %id)
BX374759 Neuroblastoma Cot 25-normalized .e 1 to 1054 5 to 1050   tiling clone,   1050/1050
(100 %)
29 diff
(97.3 %id)
CN289160 embryonic stem cells, DMSO-treated H9 cellline .e 3 to 335 1 to 333   tiling clone,   333/333
(100 %)
4 diff
(98.8 %id)
BX334179 Neuroblastoma Cot 50-normalized .e 154 to 931 1 to 776   tiling clone,   776/776
(100 %)
8 diff
(99.0 %id)
BG394589 eye, retinoblastoma .e 174 to 857 1 to 684   tiling clone,   684/976
(70 %)
10 diff
(99.0 %id)
AK298225   Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
AK299495 brain Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
BX394104 Neuroblastoma Cot 25-normalized Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
BF511090   Gene MYCN, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BF204530 muscle, rhabdomyosarcoma Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
BF313843 brain, neuroblastoma Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
BF306397 muscle, rhabdomyosarcoma Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
BQ070334 brain, neuroblastoma, cell line Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
DC361207   Gene MYCN, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI