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Gene MTF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
244 supporting clones for gene MTF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB076155 testis .a 1 to 532 2 to 533   tiling clone, capped   532/532
(100 %)
0 diff
(100 %id)
DA659598   .a 9 to 571 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AL702908 human skeletal muscle .a 11 to 765 1 to 755       755/755
(100 %)
2 diff
(99.8 %id)
NM_005955.2   .a 12 to 7982 1 to 7971 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 7971/7971
(100 %)
0 diff
(100 %id)
BP358823 mammary gland .a 18 to 596 1 to 579       579/582
(99 %)
8 diff
(98.7 %id)
DB167235 kidney, tumor tissue .a 19 to 593 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA592178 lung .a 20 to 605 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA702051   .a 22 to 576 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
BP192707 brain .a 24 to 605 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA957814 Spleen .a 25 to 585 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BP250039 hippocampus .a 28 to 608 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA172408 amygdala .a 29 to 601 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BP285459 lung .a 29 to 608 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA727098   .a 29 to 591 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA651207   .a 30 to 612 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BM455872 lymph, lymphoma, cell line .a 33 to 538 1 to 506       506/517
(97 %)
1 diff
(99.9 %id)
BG826093 muscle, rhabdomyosarcoma .a 36 to 541 1 to 516       516/740
(69 %)
20 diff
(97.3 %id)
BC014454 Muscle, rhabdomyosarcoma .a 37 to 2596 1 to 2560 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 2560/2560
(100 %)
1 diff
(100.0 %id)
DA481642   .a 37 to 603 2 to 568   capped   567/567
(100 %)
3 diff
(99.5 %id)
BP285843 lung .a 37 to 618 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA650805   .a 38 to 564 10 to 537   capped   528/543
(97 %)
2 diff
(99.7 %id)
DA053627   .a 39 to 650 2 to 613   capped   612/612
(100 %)
0 diff
(100 %id)
DA221822 brain .a 39 to 532 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
BP286596 lung .a 39 to 558 1 to 525       525/551
(95 %)
32 diff
(94.2 %id)
AU128757   .a 39 to 666 2 to 630   capped   629/632
(99 %)
12 diff
(98.2 %id)
DA931317 Spleen .a 39 to 599 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AK225923 stomach mucosa .a 40 to 2513 1 to 2474 L343P     2474/2474
(100 %)
2 diff
(100.0 %id)
AK314233   .a 40 to 2414 1 to 2375 exact     2375/2375
(100 %)
1 diff
(100.0 %id)
DA636073 Kidney .a 40 to 630 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
BP285880 lung .a 40 to 621 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP286155 lung .a 40 to 621 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP286330 lung .a 40 to 622 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BP287530 lung .a 40 to 621 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BP288316 lung .a 40 to 620 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BP342212 stomach mucosa .a 40 to 622 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP354534   .a 40 to 619 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP359182 mammary gland .a 40 to 621 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA190356 amygdala .a 41 to 645 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
DA232311 brain .a 41 to 599 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA235880 brain .a 41 to 616 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA397842 thalamus .a 41 to 633 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
DA441348 tongue, tumor tissue .a 41 to 618 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA477589   .a 41 to 615 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BP232062 muscle .a 41 to 623 1 to 581       581/581
(100 %)
7 diff
(98.8 %id)
DA553724   .a 41 to 605 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BP285644 lung .a 41 to 623 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP285729 lung .a 41 to 564 1 to 530       530/634
(83 %)
22 diff
(96.6 %id)
BP286331 lung .a 41 to 622 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP286728 lung .a 41 to 611 1 to 575       575/583
(98 %)
14 diff
(97.6 %id)
BP287184 lung .a 41 to 622 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA644326   .a 41 to 555 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA658179   .a 41 to 586 2 to 548   capped   547/547
(100 %)
6 diff
(99.0 %id)
DA658413   .a 41 to 541 2 to 503   capped   502/502
(100 %)
1 diff
(99.9 %id)
DA677188   .a 41 to 623 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA709945   .a 41 to 578 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA714793   .a 41 to 578 2 to 539   capped   538/539
(99 %)
1 diff
(99.9 %id)
DA740817   .a 41 to 586 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DA741572   .a 41 to 557 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA749488   .a 41 to 607 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA771673 brain .a 41 to 611 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA775386 brain .a 41 to 610 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA795705 brain .a 41 to 577 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA817256   .a 41 to 610 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA864229 placenta .a 41 to 623 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BP336613 coronary artery .a 41 to 651 1 to 611       611/611
(100 %)
3 diff
(99.6 %id)
DB025973 testis .a 41 to 598 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB059890 testis .a 41 to 568 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DA509340 brain .a 43 to 615 2 to 579   capped   574/578
(99 %)
4 diff
(99.4 %id)
BP288204 lung .a 43 to 623 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP285205 lung .a 44 to 624 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BQ379754 uterus_tumor .a 45 to 616 1 to 571       571/571
(100 %)
23 diff
(96.0 %id)
DA691535   .a 45 to 609 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA696276   .a 45 to 593 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA800273 brain .a 45 to 593 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BU500524   .a 46 to 925 9 to 888       880/889
(98 %)
14 diff
(98.5 %id)
DN994620 brain, whole brain .a 46 to 767 1 to 722       722/722
(100 %)
6 diff
(99.2 %id)
DB088238 testis .a 60 to 610 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
CN294880 embryonic stem cells, DMSO-treated H9 cellline .a 63 to 631 1 to 569       569/569
(100 %)
4 diff
(99.3 %id)
DB152211 thymus .a 64 to 662 2 to 600   capped   599/599
(100 %)
0 diff
(100 %id)
DA760992 tongue .a 65 to 816 2 to 757   capped   756/756
(100 %)
7 diff
(99.1 %id)
BP287610 lung .a 66 to 647 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA784779 brain .a 66 to 646 2 to 584   capped   583/584
(99 %)
3 diff
(99.5 %id)
CN294879 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 69 to 269 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
X78710 Liver .a 70 to 3371 1 to 3302 Y185H tiling clone,   3302/3302
(100 %)
3 diff
(100.0 %id)
CA406235 adipose .a 75 to 675 1 to 603       603/603
(100 %)
2 diff
(99.7 %id)
BE796390 lung, small cell carcinoma .a 87 to 893 1 to 797       797/960
(83 %)
16 diff
(98.4 %id)
CN484921 eye .a 102 to 740 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
BP251402 hippocampus .a 115 to 696 1 to 582       582/582
(100 %)
0 diff
(100 %id)
CV029040 mixed .a 153 to 786 1 to 634       634/638
(99 %)
1 diff
(99.9 %id)
AI128536 placenta .a 336 to 393 58 to 1       58/58
(100 %)
2 diff
(96.6 %id)
DB032775 testis .a 457 to 1039 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BI257931 cervical carcinoma cell line, cervix .a 519 to 1326 1 to 808       808/939
(86 %)
7 diff
(99.3 %id)
DB000693 breast, tumor tissue .a 584 to 1121 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
BQ425250 melanotic melanoma, skin .a 628 to 1512 1 to 890       890/891
(99 %)
14 diff
(98.5 %id)
BI021892 marrow .a 728 to 1059 1 to 330       330/337
(97 %)
6 diff
(98.3 %id)
BI020427 marrow .a 738 to 1059 1 to 321       321/346
(92 %)
3 diff
(99.2 %id)
BI025548 marrow .a 738 to 1059 329 to 8       322/329
(97 %)
4 diff
(98.8 %id)
BG164797 hypernephroma, cell line, Kidney .a 1016 to 1787 1 to 763       763/773
(98 %)
16 diff
(98.0 %id)
AI803055 pooled .a 1047 to 1544 515 to 18   AAA   498/504
(98 %)
1 diff
(99.9 %id)
CB146439 Liver .a 1279 to 1765 1 to 487       487/487
(100 %)
4 diff
(99.2 %id)
BE814880 breast_normal .a 1365 to 1780 10 to 423       414/423
(97 %)
6 diff
(98.6 %id)
BF036051 adenocarcinoma, ovary .a 1443 to 2189 1 to 734       737/735
(100 %)
24 diff
(96.8 %id)
BE839407 prostate_normal .a 1593 to 1972 378 to 4       372/378
(98 %)
1 diff
(99.8 %id)
BE839351 prostate_normal .a 1750 to 1972 226 to 6       221/226
(97 %)
0 diff
(100 %id)
BE906486 epithelioid carcinoma, Pancreas .a 1833 to 2563 1 to 731       731/732
(99 %)
5 diff
(99.4 %id)
AA203495 liver and spleen .a 1913 to 2435 9 to 528       520/533
(97 %)
18 diff
(96.7 %id)
BG111437 Bone, osteosarcoma, cell line .a 1917 to 2622 1 to 706       706/706
(100 %)
15 diff
(97.9 %id)
AW182367 pooled .a 1925 to 2596 674 to 1       674/699
(96 %)
12 diff
(98.3 %id)
W49779 senescent fibroblast .a 1992 to 2365 1 to 377   fully sequenced,   377/377
(100 %)
1 diff
(99.8 %id)
DB365967   .a 2066 to 2645 585 to 1       585/587
(99 %)
30 diff
(94.9 %id)
AI242055 liver and spleen .a 2109 to 2596 488 to 1       488/488
(100 %)
3 diff
(99.4 %id)
CA309684 Alveolar Macrophage, lung .a 2134 to 2734 617 to 17   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 601/602
(99 %)
0 diff
(100 %id)
CA748631 Alveolar Macrophage, lung .a 2135 to 2633 517 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 499/499
(100 %)
0 diff
(100 %id)
AI242061 liver and spleen .a 2139 to 2596 458 to 1       458/462
(99 %)
4 diff
(99.2 %id)
AI024663   .a 2190 to 2599 410 to 1       410/410
(100 %)
0 diff
(100 %id)
AW057658 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2190 to 2611 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AW057659 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2191 to 2611 421 to 1       421/421
(100 %)
0 diff
(100 %id)
AI078549 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2250 to 2730 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AI698806 pooled .a 2291 to 2595 305 to 1       305/305
(100 %)
2 diff
(99.4 %id)
CD688405 normal nasopharynx .a 2301 to 2806 23 to 527       505/527
(95 %)
7 diff
(98.7 %id)
AI016516   .a 2309 to 2619 311 to 1       311/311
(100 %)
2 diff
(99.4 %id)
AI033343 liver and spleen .a 2312 to 2729 417 to 1       417/417
(100 %)
1 diff
(99.8 %id)
W49548 senescent fibroblast .a 2335 to 2601 268 to 1   fully sequenced,   268/268
(100 %)
1 diff
(99.7 %id)
AI125324   .a 2339 to 2734 421 to 26   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AA448256   .a 2392 to 2737 346 to 1       346/346
(100 %)
0 diff
(100 %id)
AA220204   .a 2495 to 2813 1 to 317       317/319
(99 %)
7 diff
(97.9 %id)
BX097718 liver and spleen .a 2614 to 3260 1 to 647       647/647
(100 %)
0 diff
(100 %id)
H93234 liver and spleen .a 2615 to 3033 1 to 423   fully sequenced,   423/423
(100 %)
6 diff
(98.6 %id)
H94113 liver and spleen .a 2615 to 2974 1 to 366       366/374
(97 %)
8 diff
(97.9 %id)
BQ221975 epithelioid carcinoma, Pancreas .a 2625 to 3449 1 to 835       835/874
(95 %)
13 diff
(98.6 %id)
BU785886 Pancreas, Purified pancreatic islet .a 2661 to 3237 11 to 587       577/587
(98 %)
6 diff
(99.0 %id)
CK902710 Pancreas, Purified pancreatic islet .a 2699 to 3281 1 to 583     Submitted on the opposite strand 583/583
(100 %)
1 diff
(99.9 %id)
BF955906 nervous_normal .a 2712 to 2939 1 to 231       231/231
(100 %)
15 diff
(93.6 %id)
BU940662 mixed (pool of 40 RNAs) .a 2728 to 3315 1 to 595       595/860
(69 %)
14 diff
(98.4 %id)
AV719887 corresponding non cancerous liver tissue .a 2930 to 3525 596 to 1     Submitted on the opposite strand 596/596
(100 %)
4 diff
(99.4 %id)
AV718437 corresponding non cancerous liver tissue .a 2933 to 3515 583 to 1     Submitted on the opposite strand 583/583
(100 %)
15 diff
(97.5 %id)
AV719124 corresponding non cancerous liver tissue .a 2938 to 3519 584 to 2     Submitted on the opposite strand 583/584
(99 %)
0 diff
(100 %id)
BU785569 Pancreas, Purified pancreatic islet .a 2948 to 3538 591 to 1       591/591
(100 %)
1 diff
(99.9 %id)
H93106 liver and spleen .a 3003 to 3542 553 to 1   fully sequenced,   553/553
(100 %)
18 diff
(96.8 %id)
AI937330 anaplastic oligodendroglioma, brain .a 3007 to 3526 547 to 23       525/547
(95 %)
8 diff
(98.6 %id)
BJ992356 hepatoblastoma .a 3019 to 3503 485 to 1       485/485
(100 %)
0 diff
(100 %id)
AA056455.
matches multiple genes
colon, tumor .a 3079 to 3541 468 to 1     Submitted on the opposite strand, also hits gene HLCS 468/471
(99 %)
6 diff
(98.8 %id)
BF108692 pooled .a 3085 to 3542 458 to 1       458/458
(100 %)
2 diff
(99.6 %id)
BF508263   .a 3092 to 3539 463 to 18   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 446/446
(100 %)
1 diff
(99.8 %id)
BF223778 carcinoid, lung .a 3104 to 3543 440 to 1       440/440
(100 %)
1 diff
(99.8 %id)
BE350141 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 3125 to 3540 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
CK902711 Pancreas, Purified pancreatic islet .a 3128 to 3518 400 to 10     Submitted on the opposite strand 391/400
(97 %)
0 diff
(100 %id)
AA676322 liver and spleen .a 3132 to 3539 408 to 2       407/408
(99 %)
0 diff
(100 %id)
H94024 liver and spleen .a 3133 to 3539 411 to 4       408/411
(99 %)
0 diff
(100 %id)
AA743786 germinal center B cell .a 3139 to 3350 212 to 1       212/212
(100 %)
0 diff
(100 %id)
BP387083 pancreatic islet .a 3141 to 3521 1 to 381     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
BF511792   .a 3206 to 3539 351 to 18   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 334/334
(100 %)
5 diff
(98.6 %id)
AA610608 thyroid .a 3210 to 3556 352 to 7       346/352
(98 %)
0 diff
(100 %id)
BQ188646 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3297 to 3554 257 to 1   tiling clone, Submitted on the opposite strand 257/258
(99 %)
7 diff
(97.3 %id)
AI468051 anaplastic oligodendroglioma, brain .a 3298 to 3540 243 to 1       243/243
(100 %)
0 diff
(100 %id)
BQ184353 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3301 to 3539 1 to 239   AAA Submitted on the opposite strand 239/239
(100 %)
6 diff
(97.5 %id)
FN047546 breast carcinoma .a 3433 to 3527 1 to 94       94/94
(100 %)
4 diff
(95.8 %id)
AA252540.
matches multiple genes
germinal center B cell .a 3443 to 3540 98 to 1     also hits gene STAG2 98/98
(100 %)
0 diff
(100 %id)
BG013376 placenta_normal .a 3464 to 3928 9 to 477   tiling clone,   469/480
(97 %)
23 diff
(95.3 %id)
CD521113 pooled .a 3507 to 3618 1 to 111   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 111/112
(99 %)
3 diff
(97.4 %id)
H27087 breast .a 3833 to 4191 1 to 371   tiling clone,   371/391
(94 %)
10 diff
(97.5 %id)
BF897255 marrow .a 3854 to 4239 386 to 2   tiling clone, Submitted on the opposite strand 385/406
(94 %)
0 diff
(100 %id)
CF144288 lymph .a 4151 to 4504 1 to 353   tiling clone,   353/353
(100 %)
11 diff
(96.9 %id)
AK125603 Spleen .a 4230 to 7973 1 to 3744   tiling clone, available from FLJ,   3744/3744
(100 %)
7 diff
(99.9 %id)
DA942068 Spleen .a 4231 to 4821 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
BX414857 thymus .a 4248 to 4987 1 to 741       741/741
(100 %)
4 diff
(99.5 %id)
BX447318 thymus .a 4248 to 5042 1 to 799       799/922
(86 %)
28 diff
(97.0 %id)
BI258436 cervical carcinoma cell line, cervix .a 4307 to 5197 1 to 899       899/992
(90 %)
17 diff
(98.3 %id)
DA771028 brain .a 4430 to 5016 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
BQ433846 large cell carcinoma, lung .a 4434 to 5258 105 to 928   tiling clone,   824/929
(88 %)
3 diff
(99.7 %id)
R96603 liver and spleen .a 4564 to 5049 1 to 500       500/525
(95 %)
16 diff
(97.0 %id)
CX754182 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 4814 to 5529 1 to 711     Submitted on the opposite strand 711/841
(84 %)
8 diff
(99.1 %id)
W28112 eye, retina .a 4988 to 5388 411 to 12       400/453
(88 %)
0 diff
(100 %id)
BM128726 Islets of Langerhans, Pancreas .a 5080 to 5625 1 to 546   tiling clone,   546/546
(100 %)
0 diff
(100 %id)
BF379811 uterus_tumor .a 5191 to 5377 269 to 82       188/269
(69 %)
0 diff
(100 %id)
BQ188534 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5344 to 6003 1 to 660   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 660/660
(100 %)
2 diff
(99.7 %id)
TI_151732005   .a 5344 to 6005 740 to 81   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 660/911
(72 %)
4 diff
(99.6 %id)
AL138328 brain .a 5370 to 6016 1 to 645   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 645/645
(100 %)
2 diff
(99.7 %id)
CK299760 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5447 to 6005 577 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 559/559
(100 %)
0 diff
(100 %id)
AA348144 heart .a 5511 to 5753 1 to 246       246/247
(99 %)
5 diff
(98.0 %id)
AA035514 uterus .a 5572 to 6016 463 to 15   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 449/456
(98 %)
4 diff
(99.2 %id)
H24589 breast .a 5610 to 6008 417 to 13       405/417
(97 %)
0 diff
(100 %id)
BX488439   .a 5634 to 5893 1 to 259       259/259
(100 %)
2 diff
(99.3 %id)
T90984 liver and spleen .a 5642 to 6011 390 to 8       383/390
(98 %)
0 diff
(100 %id)
R96604 liver and spleen .a 5747 to 6016 269 to 1       269/275
(97 %)
2 diff
(99.3 %id)
T57133 lung .a 5843 to 5971 128 to 1     Submitted on the opposite strand 128/129
(99 %)
1 diff
(99.3 %id)
CB999152 Pooled-Skin .a 5885 to 6428 1 to 563       563/779
(72 %)
37 diff
(95.3 %id)
N32369 melanocyte .a 5909 to 6187 1 to 278       278/278
(100 %)
1 diff
(99.7 %id)
H86616 eye, retina .a 5915 to 6314 14 to 419       406/419
(96 %)
6 diff
(98.6 %id)
AA019910 eye, retina .a 5915 to 6496 1 to 593       593/595
(99 %)
24 diff
(96.0 %id)
BQ716682 sympathetic trunk .a 5941 to 6569 1 to 631       631/970
(65 %)
22 diff
(97.8 %id)
AL709782 human skeletal muscle .a 6032 to 6594 1 to 563       563/563
(100 %)
0 diff
(100 %id)
AA482161 germinal center B cell .a 6048 to 6359 1 to 312       312/312
(100 %)
0 diff
(100 %id)
DA046663 bladder .a 6068 to 6595 2 to 530   capped   529/529
(100 %)
2 diff
(99.7 %id)
DA425063 colon .a 6102 to 6595 2 to 495   tiling clone, capped   494/494
(100 %)
0 diff
(100 %id)
DA251374 caudate nucleus .a 6142 to 6689 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DB008104 cervix, tumor tissue .a 6471 to 6991 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DA572759 whole embryo, mainly body .a 6475 to 7293 2 to 817   tiling clone, capped   816/821
(99 %)
8 diff
(99.1 %id)
N22957 melanocyte .a 6491 to 6774 417 to 132       286/417
(68 %)
0 diff
(100 %id)
AA476685   .a 6575 to 6971 1 to 397       397/397
(100 %)
1 diff
(99.8 %id)
AI949543 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 6577 to 7105 529 to 1       529/529
(100 %)
1 diff
(99.9 %id)
BU154928 melanotic melanoma, skin .a 6662 to 7350 1 to 707       707/931
(75 %)
33 diff
(96.5 %id)
BI712666 Pancreas, Purified pancreatic islet .a 6716 to 7310 1 to 595       595/595
(100 %)
4 diff
(99.4 %id)
BI033355 nervous_normal .a 6832 to 7218 28 to 414       387/423
(91 %)
3 diff
(99.3 %id)
BM726811 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6840 to 7439 1 to 600   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 600/600
(100 %)
2 diff
(99.7 %id)
N47188 multiple sclerosis lesions .a 6842 to 7048 1 to 206       206/208
(99 %)
2 diff
(99.1 %id)
BE936535 nervous_tumor .a 6903 to 7218 7 to 322       316/331
(95 %)
9 diff
(97.3 %id)
AA344101 gall bladder .a 6975 to 7219 1 to 245       245/245
(100 %)
0 diff
(100 %id)
W24916 lung .a 6988 to 7384 1 to 397       397/397
(100 %)
4 diff
(99.0 %id)
BM729010 eye, fetal eye .a 7041 to 7555 1 to 515   fully sequenced, Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 515/515
(100 %)
2 diff
(99.7 %id)
CV395241 lung_normal .a 7064 to 7367 308 to 2     Submitted on the opposite strand 307/322
(95 %)
0 diff
(100 %id)
BF358311 lung_normal .a 7065 to 7376 311 to 1       311/311
(100 %)
10 diff
(96.8 %id)
BF358318 lung_normal .a 7077 to 7400 24 to 348       325/350
(92 %)
14 diff
(96.0 %id)
TI_149312324   .a 7120 to 7973 934 to 98   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 837/935
(89 %)
43 diff
(95.5 %id)
BX118592 breast .a 7184 to 7973 1 to 791   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 791/791
(100 %)
4 diff
(99.5 %id)
H22308 breast .a 7215 to 7460 1 to 246       246/246
(100 %)
1 diff
(99.6 %id)
R57329   .a 7225 to 7388 1 to 163       163/163
(100 %)
1 diff
(99.4 %id)
AU253836 neuroblastoma .a 7320 to 7983 700 to 36       665/700
(95 %)
0 diff
(100 %id)
BQ182719 Knee, Osteoarthritic Cartilage .a 7322 to 7982 678 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 660/660
(100 %)
2 diff
(99.7 %id)
BM977914 lung .a 7349 to 7973 644 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 626/626
(100 %)
3 diff
(99.6 %id)
T89950 lung .a 7370 to 7842 1 to 484       484/488
(99 %)
21 diff
(95.7 %id)
BI712424 Pancreas, Purified pancreatic islet .a 7408 to 7976 573 to 4       570/573
(99 %)
0 diff
(100 %id)
BU741113 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7409 to 7973 583 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 565/565
(100 %)
1 diff
(99.9 %id)
DB359848 whole embryo, mainly body .a 7413 to 7973 553 to 1       553/558
(99 %)
13 diff
(97.7 %id)
BM128479 Islets of Langerhans, Pancreas .a 7414 to 7976 566 to 4   tiling clone,   563/566
(99 %)
0 diff
(100 %id)
CK820866 Pancreas, Purified pancreatic islet .a 7415 to 7976 572 to 10     Submitted on the opposite strand 563/572
(98 %)
0 diff
(100 %id)
N46867 multiple sclerosis lesions .a 7427 to 7973 549 to 1       549/549
(100 %)
6 diff
(99.0 %id)
DB312969 colon .a 7436 to 7973 538 to 1       538/538
(100 %)
0 diff
(100 %id)
BF063314 colon, colon tumor, RER+ .a 7438 to 7973 536 to 1       536/536
(100 %)
0 diff
(100 %id)
DB333250 Spleen .a 7440 to 7973 535 to 1       535/535
(100 %)
1 diff
(99.9 %id)
AA019896 eye, retina .a 7444 to 7958 532 to 1       532/534
(99 %)
25 diff
(95.4 %id)
AA491294 germinal center B cell .a 7453 to 7725 273 to 1       273/273
(100 %)
0 diff
(100 %id)
AI271648 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 7478 to 7976 504 to 6       499/504
(99 %)
0 diff
(100 %id)
AI301912 2 pooled tumors (clear cell type), Kidney .a 7480 to 7983 509 to 6   tiling clone,   504/509
(99 %)
0 diff
(100 %id)
AA019847 eye, retina .a 7484 to 7973 493 to 1       493/495
(99 %)
5 diff
(99.0 %id)
N34748 melanocyte .a 7486 to 7973 487 to 1       487/487
(100 %)
11 diff
(97.8 %id)
AW977435   .a 7508 to 7976 508 to 40     Submitted on the opposite strand 469/478
(98 %)
0 diff
(100 %id)
BM681953 eye, fetal eye .a 7525 to 7982 476 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 458/458
(100 %)
0 diff
(100 %id)
AW662912 pooled .a 7545 to 7975 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AI289240 2 pooled tumors (clear cell type), Kidney .a 7548 to 7976 434 to 6       429/434
(98 %)
0 diff
(100 %id)
AI915521 pooled .a 7552 to 7982 447 to 16   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 432/432
(100 %)
3 diff
(99.4 %id)
AI248180 liver and spleen .a 7556 to 7973 418 to 1       418/418
(100 %)
0 diff
(100 %id)
BE219178 carcinoid, lung .a 7568 to 7976 410 to 2       409/410
(99 %)
0 diff
(100 %id)
AA938545 2 pooled tumors (clear cell type), Kidney .a 7571 to 7976 407 to 2       406/407
(99 %)
0 diff
(100 %id)
BY998929   .a 7575 to 7972 1 to 398     Submitted on the opposite strand 398/401
(99 %)
1 diff
(99.8 %id)
N95809 lung .a 7576 to 7974 400 to 1       400/400
(100 %)
5 diff
(98.8 %id)
AI826407 lymph node, lymphoma, follicular mixed small and largecell .a 7580 to 7725 145 to 1       145/146
(99 %)
1 diff
(99.4 %id)
AA904611 pooled .a 7596 to 7976 383 to 3       381/383
(99 %)
0 diff
(100 %id)
AA904991 pooled .a 7599 to 7973 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
H22272 breast .a 7601 to 7950 365 to 1       365/368
(99 %)
21 diff
(94.3 %id)
BF111408 pooled .a 7601 to 7973 391 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 373/373
(100 %)
0 diff
(100 %id)
AA910196 Kidney .a 7610 to 7973 386 to 23   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 364/364
(100 %)
1 diff
(99.8 %id)
H86531 eye, retina .a 7622 to 7895 279 to 1       279/281
(99 %)
5 diff
(98.3 %id)
AW086073 ovary, papillary serous carcinoma .a 7642 to 7724 86 to 3       84/86
(97 %)
0 diff
(100 %id)
BG655737 Pancreas, Purified pancreatic islet .a 7739 to 7975 238 to 1     Submitted on the opposite strand 238/238
(100 %)
1 diff
(99.6 %id)
DB240814 trachea .b 1 to 2034 2 to 588   tiling clone, capped Suspected internal deletion 587/587
(100 %)
0 diff
(100 %id)
AK309584 Kidney .c 1 to 1446 1 to 1446   tiling clone,   1446/1446
(100 %)
2 diff
(99.9 %id)
DA634503 Kidney .c 2 to 569 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
AA411300 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1 to 464 1 to 464   tiling clone,   464/464
(100 %)
5 diff
(99.0 %id)
AW965104   .d 233 to 872 1 to 640 exact tiling clone,   640/640
(100 %)
2 diff
(99.7 %id)
AA406324 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 747 to 1090 344 to 1   tiling clone,   344/344
(100 %)
0 diff
(100 %id)
AK298751 ovary Gene MTF1, variant not shown         Suspected internal deletion, this clone was ignored    
BF902238 marrow Gene MTF1, variant not shown         This clone was ignored    
DC365319 ovary Gene MTF1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI