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Gene MSX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
26 supporting clones for gene MSX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK290636 whole embryo, mainly head .a 1 to 1478 3 to 1480 G28D M146T R157S N222S     1480/1480
(100 %)
8 diff
(99.5 %id)
DB482185 hippocampus .a 1 to 473 3 to 475       475/475
(100 %)
3 diff
(99.4 %id)
DB473672 hippocampus .a 1 to 460 2 to 461       461/461
(100 %)
1 diff
(99.8 %id)
AU117214 whole embryo, mainly head .a 1 to 686 3 to 691   capped   690/690
(100 %)
11 diff
(98.5 %id)
NM_002448.3   .a 1 to 1939 2 to 1940 exact RefSeq,   1940/1940
(100 %)
0 diff
(100 %id)
AU117561 whole embryo, mainly head .a 1 to 647 2 to 650   tiling clone, capped   649/712
(91 %)
8 diff
(98.9 %id)
CN266704 embryonic stem cells, cell lines H1, H7, andH9 .a 7 to 417 1 to 411       411/411
(100 %)
3 diff
(99.3 %id)
M97676 ectomesenchyme .a 12 to 1734 1 to 1713 exact tiling clone,   1713/1713
(100 %)
11 diff
(99.4 %id)
BF726560 eye, lens .a 15 to 514 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BC021285 Pancreas, epithelioid carcinoma .a 33 to 1555 1 to 1523 exact available from MGC, AAA Possibly primed on the genome, locally A rich (40/41 A in genome downstream of last aligned base) 1523/1523
(100 %)
1 diff
(100.0 %id)
BI161459 epithelioid carcinoma cell line, Pancreas .a 37 to 697 38 to 712       675/738
(91 %)
38 diff
(94.9 %id)
AI690519 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 41 to 531 491 to 1       491/491
(100 %)
21 diff
(95.8 %id)
AI740933 pooled .a 49 to 552 505 to 1       505/505
(100 %)
4 diff
(99.3 %id)
CN266705 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 72 to 344 1 to 273       273/273
(100 %)
2 diff
(99.3 %id)
CN266703 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 97 to 512 1 to 417       417/417
(100 %)
1 diff
(99.8 %id)
DR006872 Spleen .a 150 to 676 25 to 552       528/552
(95 %)
6 diff
(99.0 %id)
AW150063 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 166 to 569 409 to 7       403/409
(98 %)
0 diff
(100 %id)
BI197326 brain, neuroblastoma .a 238 to 704 1 to 476       476/1019
(46 %)
15 diff
(98.6 %id)
BC067353 Brain, neuroblastoma .a 240 to 1555 1 to 1316   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (40/41 A in genome downstream of last aligned base) 1316/1316
(100 %)
0 diff
(100 %id)
BF666645 brain, primitive neuroectoderm .a 434 to 1134 1 to 678       678/859
(78 %)
14 diff
(98.4 %id)
BF476501 Prostate .a 632 to 1031 400 to 1       400/400
(100 %)
2 diff
(99.5 %id)
BE272990 Kidney, renal cell adenocarcinoma .a 682 to 1325 1 to 642       642/644
(99 %)
8 diff
(98.8 %id)
DB355412 whole embryo, mainly head .a 1069 to 1555 488 to 1       488/549
(88 %)
13 diff
(97.7 %id)
DB354956 whole embryo, mainly head .a 1496 to 1773 278 to 1   tiling clone,   278/278
(100 %)
1 diff
(99.7 %id)
BF116219 fibrotheoma, ovary .b 1 to 509 509 to 1 P49H tiling clone,   509/509
(100 %)
1 diff
(99.9 %id)
DB542442 hippocampus Gene MSX1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AA464792 ovarian tumor, ovary Gene MSX1, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand    
BQ001846 Fibrosarcoma Gene MSX1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI