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Gene MSI2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
393 supporting clones for gene MSI2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF034182   .b 1691 to 1925 165 to 401       237/402
(58 %)
8 diff
(98.1 %id)
Z28675 leg muscle, skeletal muscle .b 3133 to 3282 1 to 150   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 150/150
(100 %)
2 diff
(98.7 %id)
AA249587   .b 1736 to 1907 1 to 173       173/173
(100 %)
3 diff
(98.3 %id)
AA305490 colon .b 1026 to 1389 1 to 364       364/364
(100 %)
4 diff
(99.0 %id)
AA314716 colon .b 523 to 711 282 to 470       189/470
(40 %)
6 diff
(98.8 %id)
AA372628 colon .a 209 to 538 1 to 330       330/330
(100 %)
0 diff
(100 %id)
AV707089 adrenal gland .b 2484 to 3180 1 to 695       695/695
(100 %)
6 diff
(99.2 %id)
AI207633 Liver .n 11 to 530 1 to 520   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 520/520
(100 %)
0 diff
(100 %id)
AK093888 trachea .f 1 to 1859 2 to 1860 exact tiling clone, available from FLJ,   1860/1860
(100 %)
3 diff
(99.9 %id)
AK128251 thymus .g-u 2773 to 6443 1 to 3671   tiling clone, available from FLJ,   3671/3671
(100 %)
2 diff
(100.0 %id)
AK295060 brain .b 1 to 1715 1 to 1715 exact tiling clone,   1715/1715
(100 %)
2 diff
(99.9 %id)
AK297295 brain .c 268 to 1740 152 to 1625   tiling clone,   1474/1625
(90 %)
11 diff
(99.4 %id)
AL833068 human spinal cord .i-u 1 to 6625 1 to 6623 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 6623/6623
(100 %)
23 diff
(99.7 %id)
AW377687 colon .b 2851 to 3037 1 to 188       188/188
(100 %)
1 diff
(99.5 %id)
AW605404 denis_drash .b 1012 to 1397 1 to 382       382/384
(99 %)
13 diff
(96.7 %id)
AW805112 uterus .i-u 5121 to 5293 1 to 171   tiling clone,   171/174
(98 %)
6 diff
(96.6 %id)
AW856237 colon .i-u 5300 to 5767 1 to 465       465/475
(97 %)
10 diff
(97.9 %id)
AW864084 stomach_normal .b 1610 to 2181 6 to 577       572/577
(99 %)
6 diff
(99.0 %id)
AW864154 stomach_normal .b 1591 to 2182 10 to 600       591/613
(96 %)
13 diff
(97.9 %id)
AW864164 stomach_normal .b 1600 to 2146 1 to 545       545/546
(99 %)
12 diff
(97.9 %id)
AW896090 nervous_normal .k 440 to 802 524 to 162   tiling clone,   363/537
(67 %)
0 diff
(100 %id)
AW903305 nervous_normal .q 1956 to 2287 10 to 341   tiling clone,   332/346
(95 %)
1 diff
(99.8 %id)
AW960441   .b 1034 to 1671 1 to 636       636/636
(100 %)
8 diff
(98.8 %id)
AW969154   .q 4454 to 5128 670 to 1     Submitted on the opposite strand 670/670
(100 %)
10 diff
(98.6 %id)
AX748353   .f 1 to 1859 2 to 1860 exact     1860/1860
(100 %)
3 diff
(99.9 %id)
BC001526 Placenta, choriocarcinoma .a 1 to 1396 1 to 1396 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 1396/1396
(100 %)
1 diff
(100.0 %id)
BE000929 breast_normal .g-u 6918 to 7537 634 to 16     Submitted on the opposite strand 619/634
(97 %)
0 diff
(100 %id)
BE002675 breast_normal .t-u 1413 to 1924 514 to 5   tiling clone, Submitted on the opposite strand 510/514
(99 %)
0 diff
(100 %id)
BE010977 breast_normal .t-u 1 to 328 328 to 1   tiling clone, Submitted on the opposite strand 328/328
(100 %)
0 diff
(100 %id)
BE697796 colon .b 2077 to 2488 19 to 427       409/427
(95 %)
6 diff
(98.6 %id)
BE697804 colon .b 2073 to 2488 1 to 413       413/413
(100 %)
5 diff
(98.8 %id)
BE836557 prostate_normal .c 1049 to 1381 345 to 13       333/345
(96 %)
0 diff
(100 %id)
BE836562 prostate_normal .c 1051 to 1381 343 to 13       331/343
(96 %)
0 diff
(100 %id)
BE939700 uterus_tumor .k 125 to 447 334 to 12       323/334
(96 %)
0 diff
(100 %id)
BF091631 testis_normal .g-u 7191 to 7466 1 to 274       274/332
(82 %)
12 diff
(96.4 %id)
BF155165 breast .vb-u 1 to 440 29 to 465 exact tiling clone,   437/486
(89 %)
5 diff
(99.0 %id)
BF172685 blood .b 1077 to 1344 1 to 271       271/271
(100 %)
5 diff
(98.2 %id)
BF333115 breast .g-u 5218 to 5596 1 to 375       375/375
(100 %)
7 diff
(98.2 %id)
BF366011 nervous_tumor .g-u 1479 to 1826 1 to 347       347/347
(100 %)
10 diff
(97.2 %id)
BF366012 nervous_tumor .g-u 1546 to 1941 1 to 398       398/400
(99 %)
9 diff
(97.8 %id)
BF366014 nervous_tumor .g-u 1470 to 1942 1 to 476       476/487
(97 %)
5 diff
(99.0 %id)
BF366017 nervous_tumor .i-u 5389 to 5775 1 to 387   tiling clone,   387/387
(100 %)
10 diff
(97.5 %id)
BF366019 nervous_tumor .g-u 1474 to 1826 14 to 366       353/366
(96 %)
6 diff
(98.4 %id)
BF812760 colon_ins .q 4127 to 4349 1 to 219       219/219
(100 %)
8 diff
(96.4 %id)
BF838380 head_neck .k 1 to 481 15 to 497 G2V G3R L4H S5E W6L ... tiling clone,   483/499
(96 %)
14 diff
(97.2 %id)
BF884520 lung_tumor .q 4592 to 4912 332 to 14     Submitted on the opposite strand 319/332
(96 %)
0 diff
(100 %id)
BF929115 nervous_tumor .g-u 7266 to 7686 1 to 421       421/425
(99 %)
16 diff
(96.3 %id)
BF955385 nervous_normal .i-u 436 to 905 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
BF956321 nervous_normal .t-u 3798 to 4040 32 to 273       242/273
(88 %)
6 diff
(97.9 %id)
BF956323 nervous_normal .t-u 3901 to 4109 343 to 135       209/343
(60 %)
0 diff
(100 %id)
BG007627 placenta_normal .g-u 973 to 1410 1 to 439       439/439
(100 %)
4 diff
(99.1 %id)
BG953430 colon .i-u 5091 to 5283 1 to 194       194/212
(91 %)
11 diff
(94.9 %id)
BG991535 head_neck .ve-u 1 to 222 224 to 2 exact tiling clone,   223/224
(99 %)
0 diff
(100 %id)
BI029856 marrow .i-u 3521 to 3950 1 to 429       429/436
(98 %)
7 diff
(98.4 %id)
BI032746 nervous_normal .q 4669 to 4947 1 to 279       279/279
(100 %)
3 diff
(99.0 %id)
BI033139 nervous_normal .q 4613 to 4947 1 to 332       332/332
(100 %)
9 diff
(97.3 %id)
BI034212 nervous_normal .q 4650 to 4841 17 to 206       190/222
(85 %)
11 diff
(95.1 %id)
BM264417 Pancreas, Purified pancreatic islet .b 2913 to 3408 496 to 1       496/496
(100 %)
0 diff
(100 %id)
BM271776 Pancreas, Purified pancreatic islet .b 2387 to 2899 11 to 524       514/524
(98 %)
6 diff
(98.9 %id)
BM353635 Pancreas, Purified pancreatic islet .b 2863 to 3408 546 to 1       546/546
(100 %)
0 diff
(100 %id)
BM353913 Pancreas, Purified pancreatic islet .b 2386 to 2983 10 to 607       598/607
(98 %)
6 diff
(99.1 %id)
BM509418 insulinoma, Pancreas .g-u 7168 to 7610 445 to 2     Submitted on the opposite strand 444/445
(99 %)
0 diff
(100 %id)
DA066244 cerebellum .f 418 to 943 43 to 568   capped   526/567
(92 %)
5 diff
(99.2 %id)
DB297291 cerebellum .f 1684 to 2141 458 to 1       458/461
(99 %)
1 diff
(99.8 %id)
DA089808 cerebellum .h 1 to 696 2 to 575 D143R S144R P145R T146M P147A ... tiling clone, capped Suspected internal deletion 574/574
(100 %)
0 diff
(100 %id)
DA124347 cerebellum .t-u 728 to 1264 2 to 539   tiling clone, capped   538/538
(100 %)
2 diff
(99.7 %id)
DB300704 cerebellum .t-u 3939 to 4405 467 to 1       467/467
(100 %)
17 diff
(96.4 %id)
DA131289 alzheimer cortex .f 333 to 865 38 to 571   capped   534/570
(93 %)
6 diff
(99.0 %id)
DA162975 amygdala .a 120 to 588 2 to 470   capped   469/589
(79 %)
6 diff
(99.0 %id)
DC324151 brain .b 1 to 485 1 to 485       485/580
(83 %)
7 diff
(98.8 %id)
DA259617 caudate nucleus .a 77 to 588 2 to 513   capped   512/577
(88 %)
7 diff
(98.8 %id)
DA361298 subthalamic nucleus .u 1 to 547 2 to 548 exact tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
BX095130 melanocyte .b 1886 to 2454 11 to 580   tiling clone,   570/580
(98 %)
5 diff
(99.2 %id)
BX114190 liver and spleen .q 4545 to 5136 590 to 1     Submitted on the opposite strand 590/590
(100 %)
4 diff
(99.4 %id)
BX119204 pooled germ cell tumors .a 205 to 588 1 to 384       384/496
(77 %)
6 diff
(98.8 %id)
BX282070 melanotic melanoma, skin .b 466 to 956 10 to 501       492/501
(98 %)
6 diff
(98.9 %id)
BX647282 human retina .q 1 to 5122 1 to 5122 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 5122/5122
(100 %)
6 diff
(99.9 %id)
BX647939 human testis .g-u 1 to 7611 1 to 7611 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 7611/7611
(100 %)
8 diff
(99.9 %id)
C03706 heart .b 2388 to 2802 1 to 415       415/415
(100 %)
7 diff
(98.4 %id)
CD237302 Pituitary .b 2485 to 3196 1 to 711       711/711
(100 %)
9 diff
(98.8 %id)
CD636577   .a 890 to 1441 1 to 552       552/552
(100 %)
10 diff
(98.2 %id)
CD636578   .a 896 to 1441 548 to 1       548/555
(98 %)
3 diff
(99.5 %id)
CN274644 embryonic stem cells, DMSO-treated H9 cellline .a 127 to 588 1 to 462       462/660
(70 %)
6 diff
(99.1 %id)
CN290427 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2415 to 3012 1 to 598       598/598
(100 %)
0 diff
(100 %id)
CN370693 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2431 to 3164 1 to 735       735/735
(100 %)
2 diff
(99.8 %id)
CN370694 embryonic stem cells, cell lines H1, H7, andH9 .b 2983 to 3365 1 to 383       383/383
(100 %)
1 diff
(99.8 %id)
CR739002 anaplastic oligodendroglioma, brain .n 21 to 488 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
CR743213 Prostate .b 2162 to 2628 1 to 467       467/469
(99 %)
1 diff
(99.8 %id)
BX437573 thymus .c 2288 to 3236 951 to 1   tiling clone,   951/951
(100 %)
5 diff
(99.5 %id)
BX437574 thymus .c 546 to 1423 1 to 878   tiling clone,   878/878
(100 %)
3 diff
(99.7 %id)
BX441848 brain, fetal brain .b 2404 to 2920 1 to 520       520/521
(99 %)
6 diff
(98.9 %id)
BX452101 brain, fetal brain .b 2785 to 3292 1 to 514       514/635
(80 %)
31 diff
(95.2 %id)
DA454867 tongue, tumor tissue .r 1 to 501 2 to 502 F55S tiling clone, capped   501/501
(100 %)
2 diff
(99.7 %id)
CV027635 mixed .a 174 to 804 1 to 631       631/631
(100 %)
1 diff
(99.9 %id)
CV384246 nervous_tumor .vc-u 1 to 422 1 to 428 A2P L4V A12* tiling clone,   428/428
(100 %)
30 diff
(93.0 %id)
BX486517   .b 2497 to 3126 1 to 630       630/630
(100 %)
3 diff
(99.6 %id)
BX493432   .b 3610 to 4174 1 to 566   tiling clone,   566/566
(100 %)
2 diff
(99.7 %id)
BX642669   .q 913 to 1531 1 to 619   tiling clone,   619/619
(100 %)
1 diff
(99.9 %id)
DW428745 Liver .e 977 to 1183 17 to 222   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 206/222
(92 %)
6 diff
(97.3 %id)
DW431283 Liver .g-u 5758 to 6010 17 to 269       253/269
(94 %)
6 diff
(97.8 %id)
DW431598 Liver .b 439 to 697 10 to 268       259/268
(96 %)
7 diff
(97.4 %id)
DW452791 Liver .e 977 to 1151 17 to 190       174/190
(91 %)
6 diff
(96.9 %id)
EL737187 mixed .f 335 to 789 1 to 455       455/621
(73 %)
0 diff
(100 %id)
DC350824 brain .b 365 to 788 152 to 575       424/575
(73 %)
6 diff
(99.0 %id)
FN081272 breast carcinoma .b 2749 to 2818 1 to 70       70/71
(98 %)
1 diff
(98.6 %id)
FN088298 breast carcinoma .b 2680 to 2754 76 to 1     Submitted on the opposite strand 76/77
(98 %)
1 diff
(98.8 %id)
FN105568 breast carcinoma .b 2995 to 3074 80 to 3     Submitted on the opposite strand 78/94
(82 %)
0 diff
(100 %id)
FN112149 breast carcinoma .b 1817 to 1934 125 to 12     Submitted on the opposite strand 114/125
(91 %)
0 diff
(100 %id)
FN121172 breast carcinoma .b 2957 to 3068 109 to 1     Submitted on the opposite strand 109/109
(100 %)
5 diff
(95.5 %id)
FN130904 breast carcinoma .vf-u 1 to 126 1 to 129 A18S L19F F20V R21* tiling clone,   129/129
(100 %)
3 diff
(97.7 %id)
FN147378 breast carcinoma .b 2865 to 2926 61 to 1     Submitted on the opposite strand 61/61
(100 %)
1 diff
(98.4 %id)
FN149643 breast carcinoma .b 3024 to 3104 82 to 1     Submitted on the opposite strand 82/83
(98 %)
1 diff
(98.8 %id)
GD135974   .q 5083 to 5143 1 to 61       61/63
(96 %)
3 diff
(95.3 %id)
GD136674   .b 2933 to 3122 190 to 1     Submitted on the opposite strand 190/191
(99 %)
3 diff
(98.5 %id)
GD136970   .b 2933 to 3122 190 to 1     Submitted on the opposite strand 190/191
(99 %)
3 diff
(98.5 %id)
GD138449   .b 2936 to 3118 188 to 6   AAA Submitted on the opposite strand 183/188
(97 %)
0 diff
(100 %id)
GD146334   .b 2940 to 3115 181 to 6   AAA Submitted on the opposite strand 176/185
(95 %)
0 diff
(100 %id)
GD146345   .b 2936 to 3112 186 to 10     Submitted on the opposite strand 177/186
(95 %)
0 diff
(100 %id)
GD148177   .i-u 6175 to 6333 1 to 159       159/163
(97 %)
5 diff
(97.0 %id)
GD153040   .b 2602 to 2761 163 to 1   AAA Submitted on the opposite strand 163/165
(98 %)
6 diff
(96.4 %id)
GD153044   .b 2602 to 2761 160 to 1     Submitted on the opposite strand 160/167
(95 %)
2 diff
(98.9 %id)
GD158516   .q 5083 to 5143 1 to 61       61/64
(95 %)
2 diff
(96.9 %id)
AV682762 hepatocellular carcinoma .b 2523 to 3180 1 to 658       658/658
(100 %)
1 diff
(99.9 %id)
BQ638186 eye, retina .g-u 5697 to 6341 1 to 645   tiling clone,   645/645
(100 %)
0 diff
(100 %id)
DA572432 whole embryo, mainly body .f 432 to 1274 2 to 840   capped   839/848
(98 %)
14 diff
(98.4 %id)
DB359450 whole embryo, mainly body .f 1602 to 2141 542 to 1   tiling clone,   542/543
(99 %)
12 diff
(97.8 %id)
BP422325 small intestine .b 2902 to 3423 522 to 1       522/522
(100 %)
1 diff
(99.9 %id)
DA583392 lung .g-u 3503 to 4048 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DB319298 lung .g-u 5893 to 6443 551 to 1       551/551
(100 %)
0 diff
(100 %id)
AV728112 hypothalamus .c 1050 to 1780 1 to 730       730/730
(100 %)
26 diff
(96.5 %id)
H90188 liver and spleen .q 4750 to 5135 392 to 2     Submitted on the opposite strand 391/399
(97 %)
0 diff
(100 %id)
H90847 liver and spleen .q 4466 to 4822 1 to 364     Submitted on the opposite strand 364/367
(99 %)
18 diff
(95.1 %id)
N52994 liver and spleen .b 2731 to 3177 447 to 1       447/447
(100 %)
3 diff
(99.4 %id)
H96502 melanocyte .b 2934 to 3416 486 to 1       486/488
(99 %)
7 diff
(98.6 %id)
H96971 melanocyte .b 1492 to 1928 438 to 1       438/438
(100 %)
3 diff
(99.4 %id)
N20665 melanocyte .c 1452 to 1777 328 to 1   fully sequenced,   328/328
(100 %)
2 diff
(99.4 %id)
N29042 melanocyte .c 1132 to 1482 1 to 359   fully sequenced,   359/359
(100 %)
2 diff
(99.5 %id)
N66818 melanocyte .b 2967 to 3399 443 to 10       434/443
(97 %)
0 diff
(100 %id)
W56402 melanocyte .b 1913 to 2508 1 to 597       597/597
(100 %)
13 diff
(97.9 %id)
AA063071 pineal gland .g-u 7525 to 7730 1 to 206   tiling clone, Submitted on the opposite strand 206/207
(99 %)
1 diff
(99.6 %id)
AA195719 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3018 to 3408 392 to 2       391/392
(99 %)
0 diff
(100 %id)
AA195755 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1916 to 2330 1 to 416       416/416
(100 %)
1 diff
(99.8 %id)
AA227975 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1895 to 2240 346 to 1       346/346
(100 %)
2 diff
(99.5 %id)
AA228139 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 611 to 1029 1 to 404       407/404
(100 %)
26 diff
(93.6 %id)
AA235112 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1525 to 1778 254 to 1       254/254
(100 %)
1 diff
(99.7 %id)
AA235221 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1132 to 1523 1 to 391       391/391
(100 %)
5 diff
(98.8 %id)
AA425281   .b 3314 to 3760 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AA425483   .b 2850 to 3304 1 to 454       454/454
(100 %)
2 diff
(99.6 %id)
AA428576   .q 4762 to 5132 371 to 1       371/371
(100 %)
3 diff
(99.2 %id)
AA429532   .q 4188 to 4639 1 to 452   tiling clone,   452/452
(100 %)
2 diff
(99.6 %id)
AA521410 germinal center B cell .q 4552 to 5138 582 to 1       582/582
(100 %)
10 diff
(98.3 %id)
AA521327 germinal center B cell .q 4632 to 5138 508 to 1       508/508
(100 %)
9 diff
(98.3 %id)
AA468538 colon .b 2993 to 3414 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
AA774921 schizophrenic brain S-11 frontal lobe .t-u 3769 to 3912 1 to 144   tiling clone, Submitted on the opposite strand 144/144
(100 %)
1 diff
(99.4 %id)
AA552985 Schwannoma tumor .e 475 to 1185 710 to 1   tiling clone,   710/710
(100 %)
7 diff
(99.1 %id)
AA807495 germinal center B cell .b 2969 to 3426 458 to 1       458/458
(100 %)
7 diff
(98.5 %id)
AA738321 pooled germ cell tumors .b 2507 to 2712 245 to 40   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 206/206
(100 %)
1 diff
(99.6 %id)
AA743713 germinal center B cell .b 2736 to 3169 441 to 9       433/441
(98 %)
0 diff
(100 %id)
AA814267 germinal center B cell .b 2987 to 3426 438 to 1       438/438
(100 %)
5 diff
(98.9 %id)
AA765939 germinal center B cell .b 946 to 1347 417 to 16   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 402/412
(97 %)
3 diff
(99.3 %id)
AA724751 pooled .b 3056 to 3413 358 to 1       358/358
(100 %)
7 diff
(98.1 %id)
AA837252 germinal center B cell .b 3058 to 3422 362 to 1       362/362
(100 %)
2 diff
(99.5 %id)
AA836389 germinal center B cell .b 936 to 1350 432 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 414/415
(99 %)
5 diff
(98.8 %id)
AA843302 parathyroid gland, parathyroid tumor .b 3117 to 3421 306 to 1       306/306
(100 %)
1 diff
(99.7 %id)
AI184868 pooled .b 2262 to 2686 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AA960952 carcinoid, lung .b 3027 to 3333 1 to 308     Submitted on the opposite strand 308/308
(100 %)
9 diff
(97.1 %id)
AA948284 pooled germ cell tumors .b 2287 to 2712 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
AI023422 liver and spleen .t-u 1399 to 1850 463 to 12   AAA   452/452
(100 %)
0 diff
(100 %id)
AI049958   .b 2890 to 3413 539 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 524/524
(100 %)
1 diff
(99.9 %id)
AI139567 placenta .b 2261 to 2724 470 to 8       463/470
(98 %)
0 diff
(100 %id)
AI215489 pooled .b 2773 to 3168 396 to 1       396/396
(100 %)
1 diff
(99.8 %id)
AI269890 Kidney .b 2912 to 3408 501 to 4       498/501
(99 %)
0 diff
(100 %id)
AI300846 2 pooled tumors (clear cell type), Kidney .b 1049 to 1350 315 to 14   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 302/302
(100 %)
0 diff
(100 %id)
AI202531 Prostate .b 2272 to 2678 406 to 1       406/406
(100 %)
4 diff
(99.1 %id)
AI367974 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 3056 to 3408 355 to 3       353/355
(99 %)
5 diff
(98.6 %id)
AI369752 anaplastic oligodendroglioma, brain .g-u 7222 to 7612 391 to 1       391/391
(100 %)
1 diff
(99.8 %id)
AI493004 Kidney .b 2934 to 3408 475 to 1       475/475
(100 %)
0 diff
(100 %id)
AI309570 2 pooled tumors (clear cell type), Kidney .b 1059 to 1351 299 to 7       293/299
(97 %)
0 diff
(100 %id)
AI803606 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .n 426 to 933 508 to 1   tiling clone,   508/508
(100 %)
0 diff
(100 %id)
AI420567 Prostate .b 2343 to 2678 335 to 1       335/335
(100 %)
5 diff
(98.6 %id)
AI468178 Prostate .b 2502 to 2678 178 to 1       178/178
(100 %)
1 diff
(99.5 %id)
AI399898 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1508 to 1927 421 to 1       421/421
(100 %)
3 diff
(99.3 %id)
AI473254 Kidney .n 381 to 523 151 to 9       143/151
(94 %)
0 diff
(100 %id)
AI439153 Kidney .b 2896 to 3413 519 to 1       519/519
(100 %)
2 diff
(99.7 %id)
AI446696 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 906 to 1373 23 to 490     Submitted on the opposite strand 468/490
(95 %)
10 diff
(98.0 %id)
AI802948 pooled .a 766 to 1400 639 to 4       636/643
(98 %)
15 diff
(97.7 %id)
AI470018 pooled .b 2673 to 3153 1 to 481     Submitted on the opposite strand 481/481
(100 %)
1 diff
(99.8 %id)
AI498424 Kidney .b 2640 to 2925 286 to 1       286/286
(100 %)
0 diff
(100 %id)
AI498100 anaplastic oligodendroglioma, brain .n 99 to 530 461 to 29   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 433/497
(87 %)
18 diff
(96.4 %id)
AI572440 anaplastic oligodendroglioma, brain .g-u 7314 to 7612 307 to 9       299/307
(97 %)
0 diff
(100 %id)
AI632140 pooled germ cell tumors .b 3152 to 3605 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AI638003 pooled germ cell tumors .b 2911 to 3413 503 to 1       503/503
(100 %)
1 diff
(99.9 %id)
AI686063 Prostate .n 4 to 524 529 to 9       521/529
(98 %)
1 diff
(99.9 %id)
AI802169 carcinoid, lung .b 2988 to 3389 1 to 402     Submitted on the opposite strand 402/402
(100 %)
1 diff
(99.8 %id)
AI802173 carcinoid, lung .b 2599 to 3071 1 to 473     Submitted on the opposite strand 473/473
(100 %)
1 diff
(99.8 %id)
AI758917 Kidney .s 1 to 186 186 to 1 P61T tiling clone,   186/186
(100 %)
2 diff
(99.0 %id)
AI872274 ovary, tumor, 5 pooled (see description) .b 2513 to 2926 417 to 4       414/417
(99 %)
0 diff
(100 %id)
AI913722 Kidney .b 2948 to 3413 466 to 1       466/466
(100 %)
0 diff
(100 %id)
AI640458 Kidney .b 3061 to 3413 353 to 1       353/353
(100 %)
0 diff
(100 %id)
AI653310 pooled germ cell tumors .b 2235 to 2712 478 to 1       478/478
(100 %)
3 diff
(99.4 %id)
AI650679 pooled germ cell tumors .g-u 6851 to 7333 483 to 1       483/483
(100 %)
2 diff
(99.6 %id)
AI678168 Prostate .b 3021 to 3413 393 to 1       393/393
(100 %)
4 diff
(99.0 %id)
AI674728 pooled .b 2070 to 2531 469 to 8       462/469
(98 %)
0 diff
(100 %id)
AI694538 carcinoid, lung .g-u 6544 to 7078 21 to 552     Submitted on the opposite strand 532/552
(96 %)
6 diff
(99.0 %id)
AI693351 carcinoid, lung .b 2837 to 3293 1 to 457     Submitted on the opposite strand 457/457
(100 %)
0 diff
(100 %id)
AI697764 carcinoid, lung .b 2979 to 3382 1 to 404     Submitted on the opposite strand 404/404
(100 %)
4 diff
(99.1 %id)
AI694944 carcinoid, lung .b 2489 to 2966 488 to 11   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 478/478
(100 %)
0 diff
(100 %id)
AI695483 colon .b 2380 to 2713 342 to 5       338/342
(98 %)
0 diff
(100 %id)
AI798817 pooled .g-u 7308 to 7612 313 to 9       305/313
(97 %)
0 diff
(100 %id)
AI741465 pooled .b 2941 to 3411 491 to 21   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 471/471
(100 %)
1 diff
(99.8 %id)
AI761626 pooled .b 2850 to 3420 572 to 1       572/572
(100 %)
9 diff
(98.5 %id)
AI808923 B-cell, chronic lymphotic leukemia .b 3019 to 3397 391 to 13       379/391
(96 %)
0 diff
(100 %id)
AI769454 2 pooled tumors (clear cell type), Kidney .b 2781 to 3417 637 to 1       637/637
(100 %)
1 diff
(99.9 %id)
AI862535 2 pooled tumors (clear cell type), Kidney .b 2233 to 2713 484 to 4       481/484
(99 %)
0 diff
(100 %id)
AI819588 lymph node, lymphoma, follicular mixed small and largecell .b 2654 to 2855 11 to 210     Submitted on the opposite strand 200/210
(95 %)
6 diff
(97.2 %id)
AI922376 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2893 to 3287 420 to 24   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 397/397
(100 %)
18 diff
(95.5 %id)
AI933313 anaplastic oligodendroglioma, brain .n 115 to 537 424 to 1       424/424
(100 %)
2 diff
(99.6 %id)
AI937290 anaplastic oligodendroglioma, brain .b 3019 to 3414 398 to 1       398/398
(100 %)
15 diff
(96.3 %id)
AI937363 anaplastic oligodendroglioma, brain .b 2946 to 3414 469 to 1       469/469
(100 %)
3 diff
(99.4 %id)
AI970795 normal prostate, Prostate .b 2223 to 2678 456 to 1       456/456
(100 %)
2 diff
(99.6 %id)
AI971282 Prostate .n 1 to 521 536 to 9 I92N D93* tiling clone, AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 525/525
(100 %)
4 diff
(99.3 %id)
AI972510 Prostate .b 2198 to 2678 481 to 1       481/481
(100 %)
2 diff
(99.6 %id)
AI972781 Prostate .b 2232 to 2678 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AI992362 pooled germ cell tumors .b 2235 to 2712 474 to 1       474/477
(99 %)
10 diff
(98.0 %id)
AW054806 anaplastic oligodendroglioma, brain .a 190 to 486 297 to 1       297/298
(99 %)
8 diff
(97.4 %id)
AW027784 Kidney .n 82 to 535 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AW044428 pooled .b 2268 to 2718 455 to 5   tiling clone,   451/455
(99 %)
0 diff
(100 %id)
AW078936 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 3077 to 3413 351 to 15   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 337/339
(99 %)
1 diff
(99.8 %id)
AW242504 Kidney .b 2825 to 3232 408 to 1       408/408
(100 %)
6 diff
(98.6 %id)
AW242693 Kidney .b 2884 to 3399 524 to 7       518/524
(98 %)
0 diff
(100 %id)
AW134658   .b 3017 to 3413 414 to 18   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 397/397
(100 %)
0 diff
(100 %id)
AW137290   .b 2781 to 3168 405 to 18   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 388/388
(100 %)
1 diff
(99.8 %id)
AW204863   .b 3025 to 3422 398 to 1       398/398
(100 %)
0 diff
(100 %id)
AW291624   .b 2254 to 2682 443 to 15   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 429/429
(100 %)
0 diff
(100 %id)
AW292246   .b 2462 to 2712 268 to 18   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 251/251
(100 %)
3 diff
(98.9 %id)
AW270384 endometrioid ovarian metastasis, ovary .q 4479 to 4888 9 to 418     Submitted on the opposite strand 410/418
(98 %)
6 diff
(98.6 %id)
AW250196 lung, small cell carcinoma .g-u 7080 to 7611 542 to 11   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 532/532
(100 %)
0 diff
(100 %id)
AW470320 carcinoid, lung .b 2699 to 3169 471 to 1       471/471
(100 %)
1 diff
(99.8 %id)
AW593486 pooled germ cell tumors .b 2232 to 2712 481 to 1       481/481
(100 %)
1 diff
(99.8 %id)
AW590496 pooled germ cell tumors .b 2390 to 2708 323 to 5       319/323
(98 %)
0 diff
(100 %id)
AW769700 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 3076 to 3425 355 to 1       355/355
(100 %)
8 diff
(97.8 %id)
AW405813.
matches multiple genes
lymph .b 2098 to 2367 8 to 277     also hits gene IFITM1 270/277
(97 %)
6 diff
(97.9 %id)
BF197320 Kidney .b 3132 to 3408 277 to 1       277/277
(100 %)
0 diff
(100 %id)
BE219279 carcinoid, lung .b 2655 to 3169 515 to 1       515/519
(99 %)
1 diff
(99.9 %id)
BE219853 carcinoid, lung .b 2717 to 3169 453 to 1       453/453
(100 %)
2 diff
(99.6 %id)
BE220026 carcinoid, lung .b 2616 to 3169 553 to 1       553/553
(100 %)
2 diff
(99.7 %id)
BE220408 carcinoid, lung .b 2410 to 2713 304 to 1       304/304
(100 %)
0 diff
(100 %id)
BE327252 carcinoid, lung .b 944 to 1211 1 to 269     Submitted on the opposite strand 269/269
(100 %)
6 diff
(97.8 %id)
BE467574 carcinoid, lung .b 2949 to 3388 1 to 440     Submitted on the opposite strand 440/440
(100 %)
3 diff
(99.4 %id)
CB046649 2 pooled tumors (clear cell type), Kidney .c 2315 to 2760 506 to 61   tiling clone, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 446/453
(98 %)
6 diff
(98.7 %id)
CB046650 2 pooled tumors (clear cell type), Kidney .c 943 to 1201 17 to 275     Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 259/275
(94 %)
6 diff
(97.9 %id)
BF589094 pooled .b 2371 to 2713 349 to 7       343/349
(98 %)
0 diff
(100 %id)
BF435123 pooled .b 2185 to 2685 501 to 1       501/501
(100 %)
0 diff
(100 %id)
BF439690 pooled .b 2719 to 3280 566 to 5       562/566
(99 %)
0 diff
(100 %id)
BE670921 carcinoid, lung .b 2294 to 2713 423 to 4       420/423
(99 %)
0 diff
(100 %id)
BE646217 Prostate .b 2221 to 2678 458 to 1       458/458
(100 %)
0 diff
(100 %id)
BE674916 B-cell, chronic lymphotic leukemia .q 4662 to 5130 469 to 1       469/469
(100 %)
1 diff
(99.8 %id)
BF002773 Prostate .b 2297 to 2678 382 to 1       382/382
(100 %)
0 diff
(100 %id)
BF448272 carcinoid, lung .b 2668 to 3186 1 to 519     Submitted on the opposite strand 519/519
(100 %)
1 diff
(99.9 %id)
BG149533 carcinoid, lung .a 222 to 486 265 to 1       265/265
(100 %)
1 diff
(99.7 %id)
BF055409 pooled .b 2940 to 3419 480 to 1       480/480
(100 %)
6 diff
(98.8 %id)
BE278791 choriocarcinoma, placenta .a 21 to 485 1 to 469       469/699
(67 %)
7 diff
(99.0 %id)
BF196671 brain, glioblastoma (pooled) .b 2934 to 3413 480 to 1       480/480
(100 %)
0 diff
(100 %id)
BF195264 carcinoid, lung .b 2577 to 2966 390 to 1       390/390
(100 %)
2 diff
(99.5 %id)
BF445988 breast, invasive ductal carcinoma, 3 pooled samples .b 2940 to 3416 478 to 1       478/478
(100 %)
3 diff
(99.4 %id)
BF446124 Prostate .b 2296 to 2678 383 to 1       383/383
(100 %)
0 diff
(100 %id)
BF446472 carcinoid, lung .b 2980 to 3388 1 to 409     Submitted on the opposite strand 409/409
(100 %)
4 diff
(99.1 %id)
BE872236 adenocarcinoma, colon .b 2393 to 2923 1 to 532       532/532
(100 %)
9 diff
(98.4 %id)
BE778519 eye, retinoblastoma .b 632 to 1357 1 to 723       723/743
(97 %)
11 diff
(98.6 %id)
BE891200 melanotic melanoma, skin .b 2381 to 3059 3 to 680       678/690
(98 %)
6 diff
(99.2 %id)
BC017560 Skin, melanotic melanoma. .f 333 to 1859 104 to 1630   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 1527/1630
(93 %)
6 diff
(99.7 %id)
BE894256 melanotic melanoma, skin .f 565 to 869 378 to 685   available from MGC,   308/808
(38 %)
16 diff
(98.1 %id)
BE796433 lung, small cell carcinoma .g-u 2164 to 2934 1 to 763       763/944
(80 %)
23 diff
(97.6 %id)
BF029215 bladder, carcinoma, cell line .n 121 to 523 1 to 402   AAA Possibly primed on the genome, locally A rich (18/21 A in genome downstream of last aligned base) 402/402
(100 %)
3 diff
(99.3 %id)
BF345044 brain, glioblastoma with EGFR amplification .b 2388 to 3032 1 to 642       642/642
(100 %)
11 diff
(98.3 %id)
BF676261 Prostate .q 3952 to 4456 1 to 512       512/871
(58 %)
17 diff
(98.1 %id)
BF674723 Prostate .i-u 1772 to 2402 1 to 639   tiling clone,   639/641
(99 %)
30 diff
(95.4 %id)
BG223546 moderate to poorly differentiated invasivecarcinoma, tongue .a 176 to 421 1 to 246       246/247
(99 %)
2 diff
(99.2 %id)
BF797163 lymph, lymphoma, cell line .b 2389 to 3084 1 to 705       705/965
(73 %)
14 diff
(98.6 %id)
BG251844 adenocarcinoma, cell line, Liver .b 2389 to 3105 12 to 719       708/722
(98 %)
15 diff
(98.0 %id)
BG255522 adenocarcinoma, cell line, Prostate .b 1780 to 2511 1 to 727       727/823
(88 %)
14 diff
(98.3 %id)
BG261391 bladder, transitional cell papilloma, cell line .b 2385 to 3176 1 to 785       785/785
(100 %)
13 diff
(98.4 %id)
BI850917 bladder, transitional cell papilloma, cell line .b 2385 to 3062 1 to 678       678/678
(100 %)
4 diff
(99.5 %id)
BG282244 melanotic melanoma, skin .a 101 to 485 1 to 384       384/911
(42 %)
4 diff
(99.6 %id)
BG482956 lung .b 2851 to 3033 1 to 187       187/223
(83 %)
12 diff
(94.7 %id)
BG504030 embryonal carcinoma, testis .b 2398 to 3132 1 to 727       727/768
(94 %)
28 diff
(96.4 %id)
BG500195 adenocarcinoma, Prostate .b 2705 to 3430 1 to 722       722/760
(95 %)
32 diff
(95.8 %id)
BG537337 lung .e 474 to 1080 1 to 603       603/604
(99 %)
31 diff
(94.9 %id)
BG779658 adenocarcinoma, Prostate .b 2237 to 2932 1 to 696       696/696
(100 %)
7 diff
(99.0 %id)
BG745477 Spleen .t-u 3011 to 3651 1 to 646   tiling clone, fully sequenced,   646/646
(100 %)
9 diff
(98.7 %id)
BG745877 Spleen .t-u 3621 to 4359 747 to 1   tiling clone, fully sequenced,   747/747
(100 %)
15 diff
(98.0 %id)
BG912626 anaplastic oligodendroglioma with 1p/19qloss, brain .t-u 1298 to 2105 1 to 807   tiling clone,   807/828
(97 %)
31 diff
(96.3 %id)
BI223224 cervical carcinoma cell line, cervix .b 2392 to 3170 1 to 805       805/817
(98 %)
69 diff
(91.6 %id)
BM014815 breast, mammary adenocarcinoma, cell line .b 615 to 966 1 to 353       353/356
(99 %)
2 diff
(99.5 %id)
BQ270569 insulinoma, Pancreas .n 7 to 541 538 to 2   tiling clone,   537/538
(99 %)
1 diff
(99.9 %id)
BQ286271 Pancreas, Purified pancreatic islet .b 2383 to 3026 6 to 648       643/648
(99 %)
6 diff
(99.1 %id)
BQ416593 Pancreas, Purified pancreatic islet .b 2924 to 3408 496 to 12   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 485/485
(100 %)
0 diff
(100 %id)
BQ416897 Pancreas, Purified pancreatic islet .b 2386 to 2950 16 to 580   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 565/580
(97 %)
6 diff
(99.0 %id)
BQ439249 embryonal carcinoma, cell line, testis .b 3088 to 4172 12 to 1099   tiling clone,   1088/1101
(98 %)
40 diff
(96.4 %id)
BU077970 Pancreas, Purified pancreatic islet .b 2826 to 3398 584 to 11   fully sequenced,   574/584
(98 %)
1 diff
(99.9 %id)
BU078217 Pancreas, Purified pancreatic islet .b 2380 to 2856 3 to 480   fully sequenced,   478/480
(99 %)
6 diff
(98.8 %id)
BU074622 Pancreas, Purified pancreatic islet .b 2913 to 3408 497 to 3   fully sequenced,   495/497
(99 %)
6 diff
(98.8 %id)
BU074911 Pancreas, Purified pancreatic islet .b 2455 to 2943 1 to 489   fully sequenced,   489/489
(100 %)
0 diff
(100 %id)
BQ432759 testis .b 2588 to 3265 1 to 684       684/778
(87 %)
14 diff
(98.3 %id)
BU786947 insulinoma, Pancreas .b 933 to 1340 1 to 408     Submitted on the opposite strand 408/408
(100 %)
0 diff
(100 %id)
BU781866 insulinoma, Pancreas .b 2796 to 3422 634 to 8     Submitted on the opposite strand 627/634
(98 %)
0 diff
(100 %id)
BU782780 insulinoma, Pancreas .b 933 to 1582 1 to 651     Submitted on the opposite strand 651/651
(100 %)
1 diff
(99.9 %id)
BU784022 insulinoma, Pancreas .g-u 7023 to 7610 590 to 2     Submitted on the opposite strand 589/590
(99 %)
0 diff
(100 %id)
BQ424010 eye, retinoblastoma .b 2386 to 2925 1 to 540       540/766
(70 %)
8 diff
(99.0 %id)
BQ431788 eye, retinoblastoma .d 1 to 881 1 to 883 exact tiling clone,   883/884
(99 %)
10 diff
(98.9 %id)
BQ427484 melanotic melanoma, skin .b 466 to 1265 8 to 809       802/862
(93 %)
8 diff
(99.1 %id)
BQ708720 Spleen .t-u 40 to 960 1 to 926 T62R L63* tiling clone,   926/927
(99 %)
19 diff
(98.0 %id)
BQ883933 Spleen .t-u 40 to 931 1 to 897 G53R N67K L68F F69V Y70L ...     897/911
(98 %)
9 diff
(99.1 %id)
BQ929543 leiomyosarcoma, uterus .b 2386 to 3275 1 to 896       896/900
(99 %)
21 diff
(97.7 %id)
BQ951490 leiomyosarcoma, uterus .f 599 to 1510 1 to 917       917/922
(99 %)
16 diff
(98.3 %id)
CA943839 Pancreas, Purified pancreatic islet .b 3327 to 3408 82 to 1       82/82
(100 %)
0 diff
(100 %id)
CA950034 Pancreas, Purified pancreatic islet .b 2386 to 2992 11 to 617       607/617
(98 %)
6 diff
(99.1 %id)
BU852870 testis .b 2644 to 3409 1 to 777   tiling clone,   777/786
(98 %)
22 diff
(97.3 %id)
BU857812 adenocarcinoma, cell line, breast .c 1 to 770 1 to 772   tiling clone,   772/945
(81 %)
8 diff
(99.2 %id)
BU956254 adenocarcinoma, cell line, breast .u 317 to 939 127 to 753 exact tiling clone,   627/1025
(61 %)
17 diff
(98.4 %id)
BU956366 adenocarcinoma, cell line, breast .n 5 to 532 1 to 528       528/536
(98 %)
1 diff
(99.9 %id)
BU957799 mixed (pool of 40 RNAs) .b 3115 to 3449 1 to 335       335/335
(100 %)
11 diff
(96.8 %id)
CV803181 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 185 to 894 1 to 703       703/837
(83 %)
8 diff
(99.1 %id)
CX758846 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 98 to 485 1 to 388     Submitted on the opposite strand 388/779
(49 %)
4 diff
(99.5 %id)
CB990972 placenta, pre-eclamptic placenta .b 2369 to 2884 27 to 549       523/912
(57 %)
40 diff
(95.7 %id)
TI_59392879   .b 615 to 966 91 to 443       353/356
(99 %)
2 diff
(99.5 %id)
N84905   .b 1125 to 1335 1 to 212       212/212
(100 %)
3 diff
(98.6 %id)
CB135005 Liver .b 2404 to 2948 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
DA655331   .a 87 to 588 2 to 503   capped   502/553
(90 %)
6 diff
(99.0 %id)
EB387209 eye, optic nerve .c 1201 to 2038 1 to 839   tiling clone,   839/839
(100 %)
2 diff
(99.8 %id)
EB388130 eye, optic nerve .t-u 918 to 1666 1 to 748   tiling clone,   748/748
(100 %)
3 diff
(99.6 %id)
NM_138962.2   .a 1 to 1581 1 to 1581 exact RefSeq,   1581/1581
(100 %)
0 diff
(100 %id)
NM_170721.1   .f 1 to 2149 2 to 2150 exact RefSeq,   2150/2151
(99 %)
5 diff
(99.8 %id)
CV572132 cornea, eye .f 11 to 271 1 to 261   AAA   261/380
(68 %)
0 diff
(100 %id)
CV570672 cornea, eye .b 2506 to 3129 1 to 624       624/624
(100 %)
0 diff
(100 %id)
CV575027 cornea, eye .b 2385 to 3014 1 to 630       630/630
(100 %)
0 diff
(100 %id)
DA811998 ovary, tumor tissue .b 1384 to 2066 2 to 685   tiling clone, capped   684/684
(100 %)
2 diff
(99.8 %id)
DB371264 ovary, tumor tissue .b 2925 to 3413 490 to 1       490/534
(91 %)
6 diff
(98.9 %id)
CR996313 T-Lymphocytes .vd-u 1 to 376 1 to 377 Q12E tiling clone,   377/377
(100 %)
3 diff
(99.3 %id)
BM760626 lymph node, stomach .f 29 to 259 1 to 232       232/232
(100 %)
3 diff
(98.8 %id)
BM838476 lymph node, stomach .n 357 to 530 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
BM840566 lymph node, stomach .o 1 to 410 4 to 413 D89E     413/413
(100 %)
2 diff
(99.6 %id)
BM840569 lymph node, stomach .o 1 to 469 4 to 473 exact     473/473
(100 %)
1 diff
(99.8 %id)
BM841161 lymph node, stomach .o 1 to 523 4 to 526 exact tiling clone,   526/526
(100 %)
0 diff
(100 %id)
BM842394 lymph node, stomach .o 1 to 517 4 to 520 exact     520/520
(100 %)
0 diff
(100 %id)
TI_1948121457   .a 577 to 1163 706 to 119       588/1439
(40 %)
1 diff
(100.0 %id)
TI_1948121598   .a 626 to 1163 646 to 109       538/1424
(37 %)
5 diff
(99.7 %id)
TI_1948121742   .a 626 to 1163 664 to 124       541/1356
(39 %)
11 diff
(99.2 %id)
TI_1948121890   .a 626 to 1163 656 to 118       539/1300
(41 %)
1 diff
(100.0 %id)
TI_1948236814   .f 476 to 789 920 to 609     Submitted on the opposite strand 312/1389
(22 %)
12 diff
(99.2 %id)
TI_1948236815   .f 475 to 789 923 to 607     Submitted on the opposite strand 317/1401
(22 %)
6 diff
(99.6 %id)
TI_1948236818   .f 335 to 789 139 to 593       455/667
(68 %)
10 diff
(98.6 %id)
DA968374 stomach .a 68 to 588 2 to 522   capped   521/556
(93 %)
13 diff
(97.7 %id)
DR001533 fetal brain .a 201 to 866 1 to 665   tiling clone,   667/667
(100 %)
9 diff
(98.7 %id)
BE246118 leukopheresis .b 2503 to 2925 423 to 1       423/423
(100 %)
2 diff
(99.6 %id)
BE247265 leukopheresis .l 1 to 334 1 to 334   tiling clone,   334/334
(100 %)
5 diff
(98.6 %id)
BE246810 leukopheresis .b 2728 to 2925 198 to 1       198/198
(100 %)
1 diff
(99.5 %id)
BE247603 leukopheresis .l 1 to 385 1 to 384 D28V S29L K32N C121W E122G ... tiling clone,   384/388
(98 %)
8 diff
(98.0 %id)
DB015753 esophageal, tumor tissue .a 171 to 588 2 to 419   capped   418/560
(74 %)
6 diff
(99.0 %id)
DB016756 esophageal, tumor tissue .f 335 to 761 132 to 559   capped   428/559
(76 %)
7 diff
(98.8 %id)
DB130913 thymus .g-u 2774 to 3269 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DB137564 thymus .m 1 to 456 2 to 458 F16L V17C T18H E20* tiling clone, capped   457/457
(100 %)
1 diff
(99.8 %id)
DB140287 thymus .t-u 176 to 646 2 to 472   tiling clone, to resequence, capped   471/471
(100 %)
0 diff
(100 %id)
DB345319 thymus .t-u 3851 to 4405 555 to 1   tiling clone, to resequence,   555/555
(100 %)
2 diff
(99.7 %id)
DB142280 thymus .t-u 1701 to 2227 2 to 528   tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
DB143539 thymus .j 1 to 561 2 to 562 M3V tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DB147138 thymus .b 466 to 1002 40 to 577   capped   538/576
(93 %)
7 diff
(98.8 %id)
DB156612 thymus .f 32 to 635 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
TI_149282747   .b 2959 to 3431 40 to 513     Submitted on the opposite strand 474/772
(61 %)
5 diff
(99.4 %id)
TI_153988652   .b 3005 to 3431 497 to 71       427/497
(85 %)
0 diff
(100 %id)
TI_154032756   .b 2371 to 3180 55 to 863     Submitted on the opposite strand 809/1030
(78 %)
9 diff
(99.2 %id)
TI_154143193   .b 2098 to 2670 80 to 654       575/813
(70 %)
13 diff
(98.5 %id)
TI_154148720   .c 1064 to 1573 68 to 575       508/575
(88 %)
6 diff
(99.0 %id)
TI_154158236   .b 381 to 798 207 to 624       418/550
(76 %)
7 diff
(98.8 %id)
DB200794 trachea .g-u 4827 to 5405 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DB348331 trachea .g-u 6786 to 7332 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
DB201322 trachea .f 1 to 254 2 to 256   capped   255/255
(100 %)
1 diff
(99.7 %id)
DB348356 trachea .f 1333 to 1859 527 to 1       527/527
(100 %)
1 diff
(99.9 %id)
BU679924 lung, Primary Lung Epithelial Cells .b 2961 to 3413 1 to 453   AAA Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
BM672161 eye, human retina .q 4771 to 5147 377 to 1   fully sequenced,   377/377
(100 %)
3 diff
(99.3 %id)
BM700784 eye, human retina .q 4303 to 4801 1 to 499   fully sequenced,   499/499
(100 %)
5 diff
(99.0 %id)
BM664946 eye, optic nerve .e 646 to 1199 557 to 1   tiling clone, fully sequenced,   557/557
(100 %)
4 diff
(99.3 %id)
BM702269 eye, optic nerve .e 1 to 676 1 to 676   tiling clone, fully sequenced,   676/676
(100 %)
0 diff
(100 %id)
BM727230 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 703 to 828 1 to 126   fully sequenced, Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 126/126
(100 %)
0 diff
(100 %id)
BU740790 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 767 to 1347 599 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 581/581
(100 %)
0 diff
(100 %id)
BM727644 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 1 to 393 1 to 393 exact tiling clone,   393/485
(81 %)
0 diff
(100 %id)
BQ186552 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2580 to 3016 1 to 435   fully sequenced,   435/435
(100 %)
2 diff
(99.6 %id)
CK301047 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2986 to 3426 445 to 1   fully sequenced,   445/445
(100 %)
2 diff
(99.6 %id)
BM725106 eye, fetal eye .b 2153 to 2847 1 to 689   fully sequenced,   689/689
(100 %)
5 diff
(99.3 %id)
BU742002 eye, fetal eye .b 2817 to 3187 371 to 1   fully sequenced,   371/371
(100 %)
4 diff
(99.0 %id)
CA426173 Bone, Subchondral Bone .b 2628 to 3282 673 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 655/655
(100 %)
0 diff
(100 %id)
CA443096 lung, Metastatic Chondrosarcoma .b 2375 to 3124 1 to 750     Submitted on the opposite strand 750/750
(100 %)
2 diff
(99.8 %id)
BQ447277 Knee, Osteoarthritic Cartilage .b 2382 to 2682 311 to 11   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 301/307
(98 %)
1 diff
(99.7 %id)
BU616558 Cell Line, Chondrosarcoma .b 2563 to 3282 738 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 720/720
(100 %)
1 diff
(99.9 %id)
TI_151730791   .b 2579 to 3413 908 to 84   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 825/959
(86 %)
12 diff
(98.8 %id)
W22508 eye, retina .va-u 1 to 512 1 to 505 Q14N H15I K16R E17K V18C ... tiling clone, AAA   505/614
(82 %)
19 diff
(97.0 %id)
AW361805 colon .b 2455 to 2943 1 to 489       489/489
(100 %)
0 diff
(100 %id)
BF954085 nervous_normal .b 2588 to 3265 1 to 684     This clone was ignored 684/778
(87 %)
14 diff
(98.3 %id)
BF956317 nervous_normal .b 933 to 1340 1 to 408     This clone was ignored 408/408
(100 %)
0 diff
(100 %id)
BF957445 nervous_normal .b 933 to 1340 1 to 408     This clone was ignored 408/408
(100 %)
0 diff
(100 %id)
BF958571 nervous_normal .b 2796 to 3422 634 to 8     This clone was ignored 627/634
(98 %)
0 diff
(100 %id)
BF961056 nervous_normal .b 2796 to 3422 634 to 8     This clone was ignored 627/634
(98 %)
0 diff
(100 %id)
BF963520 nervous_normal .b 933 to 1582 1 to 651     This clone was ignored 651/651
(100 %)
1 diff
(99.9 %id)
BQ342872 nervous_normal .b 933 to 1582 1 to 651     This clone was ignored 651/651
(100 %)
1 diff
(99.9 %id)
BQ343087 nervous_normal .g-u 7023 to 7610 590 to 2     This clone was ignored 589/590
(99 %)
0 diff
(100 %id)
BQ343095 nervous_normal .g-u 7023 to 7610 590 to 2     This clone was ignored 589/590
(99 %)
0 diff
(100 %id)
BQ343105 nervous_normal .b 2386 to 2925 1 to 540     This clone was ignored 540/766
(70 %)
8 diff
(99.0 %id)
BQ343162 nervous_normal .b 2386 to 2925 1 to 540     This clone was ignored 540/766
(70 %)
8 diff
(99.0 %id)
BQ343179 nervous_normal .d 1 to 881 1 to 883   tiling clone, This clone was ignored 883/884
(99 %)
10 diff
(98.9 %id)
BX119310 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1 to 881 1 to 883   tiling clone,   883/884
(99 %)
10 diff
(98.9 %id)
CV392082 nervous_normal .b 466 to 1265 8 to 809     Submitted on the opposite strand 802/862
(93 %)
8 diff
(99.1 %id)
FN117082 breast carcinoma .b 466 to 1265 8 to 809     Submitted on the opposite strand 802/862
(93 %)
8 diff
(99.1 %id)
AV700840 hepatocellular carcinoma .t-u 40 to 960 1 to 926   tiling clone, AAA Submitted on the opposite strand, submitted on the opposite strand 926/927
(99 %)
19 diff
(98.0 %id)
AA678078 liver and spleen .t-u 40 to 931 1 to 897       897/911
(98 %)
9 diff
(99.1 %id)
AA447745 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2386 to 3275 1 to 896       896/900
(99 %)
21 diff
(97.7 %id)
AA453676 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2386 to 3275 1 to 896       896/900
(99 %)
21 diff
(97.7 %id)
AA601573 pheochromocytoma .f 599 to 1510 1 to 917       917/922
(99 %)
16 diff
(98.3 %id)
AI095223 B-cell, chronic lymphotic leukemia .f 599 to 1510 1 to 917       917/922
(99 %)
16 diff
(98.3 %id)
AI917592 colon, colon tumor, RER+ .b 3327 to 3408 82 to 1     Suspected internal deletion, this clone was ignored 82/82
(100 %)
0 diff
(100 %id)
AW297977   .b 3327 to 3408 82 to 1     Suspected internal deletion, this clone was ignored 82/82
(100 %)
0 diff
(100 %id)
DB155662 thymus .b 2386 to 2992 11 to 617   capped   607/617
(98 %)
6 diff
(99.1 %id)
DB346460 thymus .b 2386 to 2992 11 to 617       607/617
(98 %)
6 diff
(99.1 %id)
BU852870 testis .b 2644 to 3409 1 to 777   tiling clone,   777/786
(98 %)
22 diff
(97.3 %id)
BU857812 adenocarcinoma, cell line, breast .c 1 to 770 1 to 772   tiling clone,   772/945
(81 %)
8 diff
(99.2 %id)
BU857812 adenocarcinoma, cell line, breast .c 1 to 770 1 to 772   tiling clone,   772/945
(81 %)
8 diff
(99.2 %id)
BU956254 adenocarcinoma, cell line, breast .u 317 to 939 127 to 753 exact tiling clone,   627/1025
(61 %)
17 diff
(98.4 %id)
BU956254 adenocarcinoma, cell line, breast .u 317 to 939 127 to 753 exact tiling clone,   627/1025
(61 %)
17 diff
(98.4 %id)
BU956366 adenocarcinoma, cell line, breast .n 5 to 532 1 to 528       528/536
(98 %)
1 diff
(99.9 %id)
BU956366 adenocarcinoma, cell line, breast .n 5 to 532 1 to 528       528/536
(98 %)
1 diff
(99.9 %id)
BU957799 mixed (pool of 40 RNAs) .b 3115 to 3449 1 to 335       335/335
(100 %)
11 diff
(96.8 %id)
CV803181 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 185 to 894 1 to 703       703/837
(83 %)
8 diff
(99.1 %id)
CV803181 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 185 to 894 1 to 703       703/837
(83 %)
8 diff
(99.1 %id)
CX758846 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 98 to 485 1 to 388     Submitted on the opposite strand 388/779
(49 %)
4 diff
(99.5 %id)
CX758846 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 98 to 485 1 to 388     Submitted on the opposite strand 388/779
(49 %)
4 diff
(99.5 %id)
CB990972 placenta, pre-eclamptic placenta .b 2369 to 2884 27 to 549       523/912
(57 %)
40 diff
(95.7 %id)
CB990972 placenta, pre-eclamptic placenta .b 2369 to 2884 27 to 549       523/912
(57 %)
40 diff
(95.7 %id)
TI_59392879   .b 615 to 966 91 to 443       353/356
(99 %)
2 diff
(99.5 %id)
N84905   .b 1125 to 1335 1 to 212       212/212
(100 %)
3 diff
(98.6 %id)
CB135005 Liver .b 2404 to 2948 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
DA655331   .a 87 to 588 2 to 503   capped   502/553
(90 %)
6 diff
(99.0 %id)
EB387209 eye, optic nerve .c 1201 to 2038 1 to 839   tiling clone,   839/839
(100 %)
2 diff
(99.8 %id)
EB387209 eye, optic nerve .c 1201 to 2038 1 to 839   tiling clone,   839/839
(100 %)
2 diff
(99.8 %id)
EB388130 eye, optic nerve .t-u 918 to 1666 1 to 748   tiling clone,   748/748
(100 %)
3 diff
(99.6 %id)
EB388130 eye, optic nerve .t-u 918 to 1666 1 to 748   tiling clone,   748/748
(100 %)
3 diff
(99.6 %id)
NM_138962.2   .a 1 to 1581 1 to 1581 exact RefSeq,   1581/1581
(100 %)
0 diff
(100 %id)
NM_170721.1   .f 1 to 2149 2 to 2150 exact RefSeq,   2150/2151
(99 %)
5 diff
(99.8 %id)
CV572132 cornea, eye .f 11 to 271 1 to 261   AAA   261/380
(68 %)
0 diff
(100 %id)
CV572132 cornea, eye .f 11 to 271 1 to 261   AAA   261/380
(68 %)
0 diff
(100 %id)
CV570672 cornea, eye .b 2506 to 3129 1 to 624       624/624
(100 %)
0 diff
(100 %id)
CV570672 cornea, eye .b 2506 to 3129 1 to 624       624/624
(100 %)
0 diff
(100 %id)
CV575027 cornea, eye .b 2385 to 3014 1 to 630       630/630
(100 %)
0 diff
(100 %id)
CV575027 cornea, eye .b 2385 to 3014 1 to 630       630/630
(100 %)
0 diff
(100 %id)
DA811998 ovary, tumor tissue .b 1384 to 2066 2 to 685   tiling clone, capped   684/684
(100 %)
2 diff
(99.8 %id)
DB371264 ovary, tumor tissue .b 2925 to 3413 490 to 1       490/534
(91 %)
6 diff
(98.9 %id)
CR996313 T-Lymphocytes .vd-u 1 to 376 1 to 377 Q12E tiling clone,   377/377
(100 %)
3 diff
(99.3 %id)
BM760626 lymph node, stomach .f 29 to 259 1 to 232       232/232
(100 %)
3 diff
(98.8 %id)
BM760626 lymph node, stomach .f 29 to 259 1 to 232       232/232
(100 %)
3 diff
(98.8 %id)
BM838476 lymph node, stomach .n 357 to 530 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
BM838476 lymph node, stomach .n 357 to 530 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
BM840566 lymph node, stomach .o 1 to 410 4 to 413 D89E     413/413
(100 %)
2 diff
(99.6 %id)
BM840566 lymph node, stomach .o 1 to 410 4 to 413 D89E     413/413
(100 %)
2 diff
(99.6 %id)
BM840569 lymph node, stomach .o 1 to 469 4 to 473 exact     473/473
(100 %)
1 diff
(99.8 %id)
BM840569 lymph node, stomach .o 1 to 469 4 to 473 exact     473/473
(100 %)
1 diff
(99.8 %id)
BM841161 lymph node, stomach .o 1 to 523 4 to 526 exact tiling clone,   526/526
(100 %)
0 diff
(100 %id)
BM841161 lymph node, stomach .o 1 to 523 4 to 526 exact tiling clone,   526/526
(100 %)
0 diff
(100 %id)
BM842394 lymph node, stomach .o 1 to 517 4 to 520 exact     520/520
(100 %)
0 diff
(100 %id)
BM842394 lymph node, stomach .o 1 to 517 4 to 520 exact     520/520
(100 %)
0 diff
(100 %id)
TI_1948121457   .a 577 to 1163 706 to 119       588/1439
(40 %)
1 diff
(100.0 %id)
TI_1948121598   .a 626 to 1163 646 to 109       538/1424
(37 %)
5 diff
(99.7 %id)
TI_1948121742   .a 626 to 1163 664 to 124       541/1356
(39 %)
11 diff
(99.2 %id)
TI_1948121890   .a 626 to 1163 656 to 118       539/1300
(41 %)
1 diff
(100.0 %id)
TI_1948236814   .f 476 to 789 920 to 609     Submitted on the opposite strand 312/1389
(22 %)
12 diff
(99.2 %id)
TI_1948236815   .f 475 to 789 923 to 607     Submitted on the opposite strand 317/1401
(22 %)
6 diff
(99.6 %id)
TI_1948236818   .f 335 to 789 139 to 593       455/667
(68 %)
10 diff
(98.6 %id)
DA968374 stomach .a 68 to 588 2 to 522   capped   521/556
(93 %)
13 diff
(97.7 %id)
DR001533 fetal brain .a 201 to 866 1 to 665   tiling clone,   667/667
(100 %)
9 diff
(98.7 %id)
BE246118 leukopheresis .b 2503 to 2925 423 to 1       423/423
(100 %)
2 diff
(99.6 %id)
BE247265 leukopheresis .l 1 to 334 1 to 334   tiling clone,   334/334
(100 %)
5 diff
(98.6 %id)
BE246810 leukopheresis .b 2728 to 2925 198 to 1       198/198
(100 %)
1 diff
(99.5 %id)
BE247603 leukopheresis .l 1 to 385 1 to 384 D28V S29L K32N C121W E122G ... tiling clone,   384/388
(98 %)
8 diff
(98.0 %id)
DB015753 esophageal, tumor tissue .a 171 to 588 2 to 419   capped   418/560
(74 %)
6 diff
(99.0 %id)
DB016756 esophageal, tumor tissue .f 335 to 761 132 to 559   capped   428/559
(76 %)
7 diff
(98.8 %id)
DB130913 thymus .g-u 2774 to 3269 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DB137564 thymus .m 1 to 456 2 to 458 F16L V17C T18H E20* tiling clone, capped   457/457
(100 %)
1 diff
(99.8 %id)
DB140287 thymus .t-u 176 to 646 2 to 472   tiling clone, to resequence, capped   471/471
(100 %)
0 diff
(100 %id)
DB345319 thymus .t-u 3851 to 4405 555 to 1   tiling clone, to resequence,   555/555
(100 %)
2 diff
(99.7 %id)
DB142280 thymus .t-u 1701 to 2227 2 to 528   tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
DB143539 thymus .j 1 to 561 2 to 562 M3V tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DB147138 thymus .b 466 to 1002 40 to 577   capped   538/576
(93 %)
7 diff
(98.8 %id)
DB156612 thymus .f 32 to 635 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
TI_149282747   .b 2959 to 3431 40 to 513     Submitted on the opposite strand 474/772
(61 %)
5 diff
(99.4 %id)
TI_153988652   .b 3005 to 3431 497 to 71       427/497
(85 %)
0 diff
(100 %id)
TI_154032756   .b 2371 to 3180 55 to 863     Submitted on the opposite strand 809/1030
(78 %)
9 diff
(99.2 %id)
TI_154143193   .b 2098 to 2670 80 to 654       575/813
(70 %)
13 diff
(98.5 %id)
TI_154148720   .c 1064 to 1573 68 to 575       508/575
(88 %)
6 diff
(99.0 %id)
TI_154158236   .b 381 to 798 207 to 624       418/550
(76 %)
7 diff
(98.8 %id)
DB200794 trachea .g-u 4827 to 5405 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DB348331 trachea .g-u 6786 to 7332 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
DB201322 trachea .f 1 to 254 2 to 256   capped   255/255
(100 %)
1 diff
(99.7 %id)
DB348356 trachea .f 1333 to 1859 527 to 1       527/527
(100 %)
1 diff
(99.9 %id)
BU679924 lung, Primary Lung Epithelial Cells .b 2961 to 3413 1 to 453   AAA Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
BU679924 lung, Primary Lung Epithelial Cells .b 2961 to 3413 1 to 453   AAA Submitted on the opposite strand 453/453
(100 %)
1 diff
(99.8 %id)
BM672161 eye, human retina .q 4771 to 5147 377 to 1   fully sequenced,   377/377
(100 %)
3 diff
(99.3 %id)
BM672161 eye, human retina .q 4771 to 5147 377 to 1   fully sequenced,   377/377
(100 %)
3 diff
(99.3 %id)
BM700784 eye, human retina .q 4303 to 4801 1 to 499   fully sequenced,   499/499
(100 %)
5 diff
(99.0 %id)
BM700784 eye, human retina .q 4303 to 4801 1 to 499   fully sequenced,   499/499
(100 %)
5 diff
(99.0 %id)
BM664946 eye, optic nerve .e 646 to 1199 557 to 1   tiling clone, fully sequenced,   557/557
(100 %)
4 diff
(99.3 %id)
BM664946 eye, optic nerve .e 646 to 1199 557 to 1   tiling clone, fully sequenced,   557/557
(100 %)
4 diff
(99.3 %id)
BM702269 eye, optic nerve .e 1 to 676 1 to 676   tiling clone, fully sequenced,   676/676
(100 %)
0 diff
(100 %id)
BM702269 eye, optic nerve .e 1 to 676 1 to 676   tiling clone, fully sequenced,   676/676
(100 %)
0 diff
(100 %id)
BM727230 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 703 to 828 1 to 126   fully sequenced, Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 126/126
(100 %)
0 diff
(100 %id)
BM727230 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 703 to 828 1 to 126   fully sequenced, Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 126/126
(100 %)
0 diff
(100 %id)
BU740790 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 767 to 1347 599 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 581/581
(100 %)
0 diff
(100 %id)
BU740790 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 767 to 1347 599 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 581/581
(100 %)
0 diff
(100 %id)
BM727644 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 1 to 393 1 to 393 exact tiling clone,   393/485
(81 %)
0 diff
(100 %id)
BM727644 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 1 to 393 1 to 393 exact tiling clone,   393/485
(81 %)
0 diff
(100 %id)
BQ186552 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2580 to 3016 1 to 435   fully sequenced,   435/435
(100 %)
2 diff
(99.6 %id)
BQ186552 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2580 to 3016 1 to 435   fully sequenced,   435/435
(100 %)
2 diff
(99.6 %id)
CK301047 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2986 to 3426 445 to 1   fully sequenced,   445/445
(100 %)
2 diff
(99.6 %id)
CK301047 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2986 to 3426 445 to 1   fully sequenced,   445/445
(100 %)
2 diff
(99.6 %id)
BM725106 eye, fetal eye .b 2153 to 2847 1 to 689   fully sequenced,   689/689
(100 %)
5 diff
(99.3 %id)
BM725106 eye, fetal eye .b 2153 to 2847 1 to 689   fully sequenced,   689/689
(100 %)
5 diff
(99.3 %id)
BU742002 eye, fetal eye .b 2817 to 3187 371 to 1   fully sequenced,   371/371
(100 %)
4 diff
(99.0 %id)
BU742002 eye, fetal eye .b 2817 to 3187 371 to 1   fully sequenced,   371/371
(100 %)
4 diff
(99.0 %id)
CA426173 Bone, Subchondral Bone .b 2628 to 3282 673 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 655/655
(100 %)
0 diff
(100 %id)
CA426173 Bone, Subchondral Bone .b 2628 to 3282 673 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 655/655
(100 %)
0 diff
(100 %id)
CA443096 lung, Metastatic Chondrosarcoma .b 2375 to 3124 1 to 750     Submitted on the opposite strand 750/750
(100 %)
2 diff
(99.8 %id)
CA443096 lung, Metastatic Chondrosarcoma .b 2375 to 3124 1 to 750     Submitted on the opposite strand 750/750
(100 %)
2 diff
(99.8 %id)
BQ447277 Knee, Osteoarthritic Cartilage .b 2382 to 2682 311 to 11   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 301/307
(98 %)
1 diff
(99.7 %id)
BQ447277 Knee, Osteoarthritic Cartilage .b 2382 to 2682 311 to 11   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 301/307
(98 %)
1 diff
(99.7 %id)
BU616558 Cell Line, Chondrosarcoma .b 2563 to 3282 738 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 720/720
(100 %)
1 diff
(99.9 %id)
BU616558 Cell Line, Chondrosarcoma .b 2563 to 3282 738 to 19   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 720/720
(100 %)
1 diff
(99.9 %id)
TI_151730791   .b 2579 to 3413 908 to 84   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 825/959
(86 %)
12 diff
(98.8 %id)
W22508 eye, retina .va-u 1 to 512 1 to 505 Q14N H15I K16R E17K V18C ... tiling clone, AAA   505/614
(82 %)
19 diff
(97.0 %id)
W22508 eye, retina .va-u 1 to 512 1 to 505 Q14N H15I K16R E17K V18C ... tiling clone, AAA   505/614
(82 %)
19 diff
(97.0 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i-u, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t-u, .u, .va-u, .vb-u, .vc-u, .vd-u, .ve-u, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C