cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AA321681 | .a | 705 to 1018 | 1 to 314 | 314/314 (100 %) | 3 diff (99.1 %id) | ||||
AA368960 | placenta | .a | 1272 to 1457 | 192 to 7 | 186/192 (96 %) | 0 diff (100 %id) | |||
AB056161 | .a | 342 to 1462 | 1 to 1121 | exact | 1121/1125 (99 %) | 1 diff (100.0 %id) | |||
AJ306593 | .a | 373 to 1385 | 1 to 1013 | exact | 1013/1013 (100 %) | 0 diff (100 %id) | |||
AK055576 | lung | .b | 2959 to 5025 | 1 to 2066 | exact | tiling clone, available from FLJ, | 2066/2066 (100 %) | 3 diff (99.9 %id) | |
AK126510 | uterus | .b | 1 to 3578 | 2 to 3579 | tiling clone, available from FLJ, | 3579/3579 (100 %) | 1 diff (100.0 %id) | ||
AK310214 | esophagus, tumor tissue | .d | 1 to 1038 | 1 to 1039 | C31R | tiling clone, | 1039/1039 (100 %) | 2 diff (99.9 %id) | |
AY030095 | .a | 392 to 1462 | 1 to 1071 | exact | 1071/1077 (99 %) | 1 diff (100.0 %id) | |||
AY359106 | .a | 357 to 1466 | 1 to 1110 | exact | tiling clone, AAA | 1110/1110 (100 %) | 0 diff (100 %id) | ||
BC034294 | Skin, squamous cell carcinoma | .a | 337 to 1463 | 1 to 1127 | exact | tiling clone, available from MGC, AAA | 1127/1127 (100 %) | 0 diff (100 %id) | |
BE715483 | head_neck | .a | 1234 to 1460 | 229 to 5 | 225/231 (97 %) | 0 diff (100 %id) | |||
BF353799 | head_neck | .a | 1036 to 1388 | 353 to 1 | 353/353 (100 %) | 0 diff (100 %id) | |||
BF354810 | head_neck | .a | 764 to 899 | 154 to 21 | 134/162 (82 %) | 4 diff (97.6 %id) | |||
BF909691 | uterus_tumor | .a | 1094 to 1450 | 361 to 5 | Submitted on the opposite strand | 357/361 (98 %) | 0 diff (100 %id) | ||
BF916269 | uterus_tumor | .a | 1165 to 1379 | 1 to 213 | 213/215 (99 %) | 7 diff (96.8 %id) | |||
BX284078 | skin, squamous cell carcinoma | .a | 338 to 812 | 1 to 475 | 475/475 (100 %) | 0 diff (100 %id) | |||
CN315092 | embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells | .a | 682 to 1066 | 6 to 390 | 385/390 (98 %) | 23 diff (94.2 %id) | |||
BY999373 | .a | 1213 to 1465 | 1 to 253 | Submitted on the opposite strand | 253/256 (98 %) | 1 diff (99.7 %id) | |||
BX333716 | Neuroblastoma Cot 25-normalized | .c | 437 to 1097 | 839 to 175 | 633/839 (75 %) | 9 diff (99.0 %id) | |||
DA581288 | lung | .b | 2960 to 3526 | 2 to 568 | capped | 567/567 (100 %) | 0 diff (100 %id) | ||
DB319193 | lung | .b | 4483 to 5025 | 544 to 1 | 544/545 (99 %) | 1 diff (99.9 %id) | |||
AA648793 | germinal center B cell | .a | 1046 to 1145 | 100 to 1 | 100/100 (100 %) | 4 diff (96.0 %id) | |||
AI272325 | brain, oligodendroglioma | .a | 1059 to 1422 | 364 to 1 | 364/364 (100 %) | 0 diff (100 %id) | |||
AW084167 | esophagus, squamous cell carcinoma | .a | 899 to 1457 | 561 to 1 | 561/601 (93 %) | 11 diff (98.2 %id) | |||
AW170323 | cervix, tumor | .a | 863 to 1462 | 602 to 3 | 600/602 (99 %) | 10 diff (98.4 %id) | |||
BG679626 | skin, squamous cell carcinoma | .a | 338 to 1269 | 1 to 947 | Q87H V88G L89P L90A A92G ... | 947/947 (100 %) | 30 diff (96.9 %id) | ||
BC036912 | Cervix, carcinoma | .c | 1 to 1297 | 12 to 1308 | exact | tiling clone, available from MGC, AAA | 1297/1297 (100 %) | 0 diff (100 %id) | |
BI254797 | cervical carcinoma cell line, cervix | .c | 1 to 622 | 13 to 634 | available from MGC, | 622/634 (98 %) | 6 diff (99.1 %id) | ||
NM_031948.3 | .a | 1 to 1462 | 1 to 1462 | exact | RefSeq, | 1462/1462 (100 %) | 0 diff (100 %id) | ||
BM792755 | stomach | .a | 858 to 1464 | 1 to 608 | 608/608 (100 %) | 1 diff (99.9 %id) | |||
BM832898 | stomach | .a | 858 to 1337 | 1 to 480 | 480/480 (100 %) | 0 diff (100 %id) | |||
BM854083 | Ascites, stomach | .c | 15 to 555 | 1 to 541 | 541/541 (100 %) | 2 diff (99.7 %id) | |||
DC394298 | esophageal, tumor tissue | .c | 326 to 903 | 1 to 578 | 578/578 (100 %) | 1 diff (99.9 %id) | |||
DB051783 | testis | .b | 2153 to 2711 | 2 to 560 | capped | 559/559 (100 %) | 0 diff (100 %id) | ||
DB338610 | testis | .b | 4497 to 5025 | 532 to 1 | 532/532 (100 %) | 4 diff (99.3 %id) | |||
BM670388 | eye, lens | .a | 844 to 1461 | 633 to 19 | fully sequenced, AAA | 615/615 (100 %) | 4 diff (99.4 %id) | ||
BM712096 | eye, lens | .a | 342 to 874 | 1 to 533 | fully sequenced, | 533/533 (100 %) | 1 diff (99.9 %id) | ||
DB279605 | uterus | .b | 1 to 541 | 2 to 542 | capped | 541/541 (100 %) | 2 diff (99.7 %id) | ||
DB352396 | uterus | .b | 3186 to 3578 | 393 to 1 | 393/393 (100 %) | 0 diff (100 %id) | |||
BF354298 | head_neck | .c | 326 to 903 | 1 to 578 | Suspected internal deletion, this clone was ignored | 578/578 (100 %) | 1 diff (99.9 %id) | ||
DB016936 | esophageal, tumor tissue | .b | 2153 to 2711 | 2 to 560 | capped | This clone was ignored | 559/559 (100 %) | 0 diff (100 %id) | |
DB335482 | esophageal, tumor tissue | .b | 4497 to 5025 | 532 to 1 | This clone was ignored | 532/532 (100 %) | 4 diff (99.3 %id) | ||
BM670388 | eye, lens | .a | 844 to 1461 | 633 to 19 | fully sequenced, AAA | 615/615 (100 %) | 4 diff (99.4 %id) | ||
BM670388 | eye, lens | .a | 844 to 1461 | 633 to 19 | fully sequenced, AAA | 615/615 (100 %) | 4 diff (99.4 %id) | ||
BM712096 | eye, lens | .a | 342 to 874 | 1 to 533 | fully sequenced, | 533/533 (100 %) | 1 diff (99.9 %id) | ||
BM712096 | eye, lens | .a | 342 to 874 | 1 to 533 | fully sequenced, | 533/533 (100 %) | 1 diff (99.9 %id) | ||
DB279605 | uterus | .b | 1 to 541 | 2 to 542 | capped | 541/541 (100 %) | 2 diff (99.7 %id) | ||
DB352396 | uterus | .b | 3186 to 3578 | 393 to 1 | 393/393 (100 %) | 0 diff (100 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |