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Gene MMP17TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
56 supporting clones for gene MMP17 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI551593 brain, hippocampus .a 1 to 644 1 to 658       658/658
(100 %)
13 diff
(98.1 %id)
TI_44171005   .a 2 to 644 121 to 777       657/777
(84 %)
4 diff
(99.5 %id)
AB021225   .a 9 to 2418 1 to 2419   tiling clone, AAA   2419/2419
(100 %)
10 diff
(99.6 %id)
NM_016155.4   .a 9 to 2418 1 to 2410   RefSeq, AAA   2410/2410
(100 %)
2 diff
(100.0 %id)
BC045610 Brain, hippocampus .a 11 to 2418 6 to 2422   tiling clone, available from MGC, AAA   2417/2417
(100 %)
12 diff
(99.6 %id)
DB475866 hippocampus .a 11 to 231 1 to 230       230/230
(100 %)
5 diff
(97.9 %id)
CN267843 embryonic stem cells, cell lines H1, H7, andH9 .a 22 to 166 1 to 147       147/147
(100 %)
8 diff
(94.6 %id)
BC040507 Brain, hypothalamus .a 23 to 2417 1 to 2404   available from MGC, AAA   2404/2404
(100 %)
12 diff
(99.6 %id)
DR007226 testis .a 159 to 704 18 to 563   tiling clone,   546/563
(96 %)
1 diff
(99.9 %id)
CA489162   .a 420 to 1264 27 to 877       851/933
(91 %)
23 diff
(97.6 %id)
BX389435 Neuroblastoma Cot 25-normalized .a 605 to 1491 6 to 894   tiling clone,   889/894
(99 %)
8 diff
(99.2 %id)
BG768359 melanotic melanoma, high MDR (cell line), skin .a 954 to 1675 1 to 720       722/721
(100 %)
11 diff
(98.5 %id)
BF347731 anaplastic oligodendroglioma with 1p/19qloss, brain .a 964 to 1715 1 to 745       745/957
(77 %)
26 diff
(97.3 %id)
BU167886 melanotic melanoma, cell line, skin .a 1233 to 2017 1 to 787       787/1017
(77 %)
17 diff
(98.4 %id)
BU179230 melanotic melanoma, cell line, skin .a 1233 to 2120 1 to 892       892/919
(97 %)
24 diff
(97.4 %id)
BQ680344 melanotic melanoma, cell line, skin .a 1233 to 2161 1 to 937       937/982
(95 %)
35 diff
(96.5 %id)
BQ678947 melanotic melanoma, cell line, skin .a 1233 to 1871 1 to 640       640/886
(72 %)
18 diff
(98.0 %id)
AL119881 amygdala .a 1262 to 1616 1 to 356       356/356
(100 %)
1 diff
(99.8 %id)
BX440072 brain, fetal brain .a 1329 to 2373 1029 to 1       1029/1125
(91 %)
26 diff
(97.7 %id)
BY799254 eye .a 1345 to 1977 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
BQ953874 sciatic nerve .a 1360 to 2059 24 to 734       711/919
(77 %)
22 diff
(97.7 %id)
BQ638867 eye, retina .a 1519 to 2072 1 to 554       554/554
(100 %)
7 diff
(98.8 %id)
M78759   .a 1549 to 1879 330 to 1       330/330
(100 %)
1 diff
(99.7 %id)
BQ949787 large cell carcinoma, lung .a 1569 to 2418 875 to 21   AAA Submitted on the opposite strand 855/888
(96 %)
12 diff
(98.7 %id)
AI760347 B-cell, chronic lymphotic leukemia .a 1680 to 2416 734 to 2       733/734
(99 %)
0 diff
(100 %id)
CB853326 Human Lung Epithelial cells, lung .a 1745 to 2418 696 to 19   tiling clone, AAA   678/678
(100 %)
12 diff
(98.3 %id)
BQ227546 melanotic melanoma, skin .a 1789 to 2418 1 to 630   AAA   630/630
(100 %)
2 diff
(99.7 %id)
AI829838 lymph node, lymphoma, follicular mixed small and largecell .a 1848 to 2416 569 to 2       568/569
(99 %)
0 diff
(100 %id)
BG118062 adenocarcinoma, cell line, Liver .a 2094 to 2143 1 to 50       50/50
(100 %)
0 diff
(100 %id)
X89576 breast carcinoma .b 1 to 2301 1 to 2301 A162T tiling clone,   2301/2306
(99 %)
6 diff
(99.8 %id)
AA522814 lung, lung tumor .b 1728 to 2292 564 to 5       560/564
(99 %)
0 diff
(100 %id)
BX091026 whole brain .b 1756 to 2291 551 to 15   AAA Submitted on the opposite strand 537/537
(100 %)
4 diff
(99.3 %id)
H97792 melanocyte .b 1941 to 2289 347 to 3       345/347
(99 %)
0 diff
(100 %id)
AW168692 bowel (skin primary), metastatic melanoma to bowel .b 2007 to 2289 289 to 4   tiling clone,   286/289
(98 %)
0 diff
(100 %id)
AI539031 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 2032 to 2291 270 to 11   AAA   260/260
(100 %)
5 diff
(98.1 %id)
BG819285 anaplastic oligodendroglioma with 1p/19qloss, brain .b 2044 to 2291 1 to 249   AAA   249/249
(100 %)
2 diff
(99.2 %id)
BU159935 eye, retinoblastoma .b 2081 to 2291 11 to 221   AAA   211/221
(95 %)
0 diff
(100 %id)
BF514267   .b 2151 to 2291 158 to 18   AAA   141/141
(100 %)
1 diff
(99.3 %id)
BF515166   .b 2160 to 2291 149 to 18   AAA   132/141
(93 %)
1 diff
(99.3 %id)
R42600 whole brain .b 2172 to 2292 129 to 9       121/130
(93 %)
0 diff
(100 %id)
CX164260 human embryonic stem cells differentiated toan early endodermal cell type .c 1 to 775 1 to 784   tiling clone,   784/784
(100 %)
5 diff
(99.4 %id)
BM083678 melanotic melanoma, skin .c 541 to 1200 1 to 660       660/660
(100 %)
2 diff
(99.7 %id)
BG478782 melanotic melanoma, skin .c 541 to 1382 1 to 851   tiling clone,   851/956
(89 %)
18 diff
(98.2 %id)
BE281640 choriocarcinoma, placenta .c 1077 to 1778 22 to 723   tiling clone,   702/772
(90 %)
26 diff
(96.7 %id)
TI_59393892   .d 1 to 661 86 to 745   tiling clone,   660/660
(100 %)
1 diff
(99.9 %id)
BM015637 breast, mammary adenocarcinoma, cell line .d 2 to 661 1 to 659   tiling clone,   659/659
(100 %)
1 diff
(99.9 %id)
BG251251 adenocarcinoma, cell line, Liver .d 195 to 925 1 to 725   tiling clone,   725/970
(74 %)
13 diff
(98.7 %id)
DA738039   .e 1 to 753 2 to 759   tiling clone, capped   758/763
(99 %)
12 diff
(98.5 %id)
DB370648   .e 1259 to 1785 536 to 3   tiling clone,   534/580
(92 %)
22 diff
(96.3 %id)
CX783961 human embryonic stem cells .f 1 to 711 1 to 711 T6P tiling clone,   711/711
(100 %)
2 diff
(99.8 %id)
DB269753 uterus .g-u 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
BX505590   .g-u 513 to 690 1 to 181   tiling clone,   181/181
(100 %)
4 diff
(97.8 %id)
BX375177 Neuroblastoma Cot 25-normalized Gene MMP17, variant not shown         Suspected internal deletion, this clone was ignored    
BX440073 brain, fetal brain Gene MMP17, variant not shown         This clone was ignored    
BX440074 brain, fetal brain Gene MMP17, variant not shown         This clone was ignored    
T77190 whole brain Gene MMP17, variant not shown              
BG478494 melanotic melanoma, skin Gene MMP17, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI