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Gene AFF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
451 supporting clones for gene AFF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_157607667   .a 1 to 585 657 to 73   tiling clone,   585/657
(89 %)
0 diff
(100 %id)
AW295169   .a 104 to 583 480 to 1   tiling clone,   480/480
(100 %)
0 diff
(100 %id)
TI_158432585   .a 237 to 585 407 to 59       349/523
(66 %)
0 diff
(100 %id)
NM_001166693.1   .a 505 to 9789 1 to 9285 exact RefSeq,   9285/9285
(100 %)
0 diff
(100 %id)
AK300364 placenta .a 514 to 4534 1 to 4021 M769V R827G tiling clone,   4021/4021
(100 %)
4 diff
(100.0 %id)
BG571934 placenta .a 514 to 1327 1 to 819   available from MGC,   819/932
(87 %)
14 diff
(98.5 %id)
DC381990 placenta .a 514 to 1055 1 to 542       542/542
(100 %)
0 diff
(100 %id)
DC382481 placenta .a 518 to 1081 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DA857102 placenta .a 519 to 818 2 to 301   capped   300/536
(55 %)
1 diff
(99.9 %id)
DC398418.
matches multiple genes
testis .a 553 to 1129 1 to 577     also hits gene BTBD6 577/577
(100 %)
0 diff
(100 %id)
BP321128 placenta .a 556 to 1167 1 to 612       612/612
(100 %)
0 diff
(100 %id)
H02483 placenta .a 586 to 1023 1 to 452     Submitted on the opposite strand 452/457
(98 %)
26 diff
(94.4 %id)
AL699384 human skeletal muscle .a 620 to 1205 1 to 586       586/586
(100 %)
0 diff
(100 %id)
AW006398 normal prostate, Prostate .a 660 to 821 1 to 162     Submitted on the opposite strand 162/162
(100 %)
0 diff
(100 %id)
DC409347 thymus .a 660 to 1222 1 to 563       563/563
(100 %)
2 diff
(99.7 %id)
BP321152 placenta .a 676 to 1257 1 to 582       582/582
(100 %)
0 diff
(100 %id)
H02482 placenta .a 805 to 1137 334 to 1     Submitted on the opposite strand 334/450
(74 %)
5 diff
(98.9 %id)
BF083573 colon .a 881 to 1123 9 to 251       243/251
(96 %)
9 diff
(96.5 %id)
BF758150 colon .a 908 to 1156 249 to 2     Submitted on the opposite strand 248/252
(98 %)
4 diff
(98.5 %id)
BG428279 Kidney .a 1302 to 1950 1 to 664       624/968
(64 %)
29 diff
(97.1 %id)
AF177238   .a 1404 to 1893 1 to 490       490/596
(82 %)
6 diff
(99.0 %id)
AF177239   .a 1404 to 1893 1 to 490       490/596
(82 %)
6 diff
(99.0 %id)
BQ327541 kidney_tumor .a 1461 to 1883 470 to 51       422/472
(89 %)
6 diff
(98.8 %id)
BF820111 kidney_tumor .a 1498 to 1933 43 to 473       431/492
(87 %)
8 diff
(98.4 %id)
BF820827 kidney_tumor .a 1501 to 1939 7 to 449       443/450
(98 %)
12 diff
(97.4 %id)
BF739186 bladder_tumor .a 1548 to 1916 1 to 372       372/372
(100 %)
14 diff
(96.3 %id)
AW971934   .a 1645 to 2272 626 to 1     Submitted on the opposite strand 626/626
(100 %)
7 diff
(98.9 %id)
BU428603 lymph .a 1660 to 2289 8 to 637       630/637
(98 %)
6 diff
(99.1 %id)
TI_154149344   .a 1660 to 2414 80 to 838       759/830
(91 %)
12 diff
(98.6 %id)
BF820455 kidney_tumor .a 1693 to 1929 238 to 1     Submitted on the opposite strand 241/238
(101 %)
13 diff
(94.6 %id)
BG003711 placenta_normal .a 1731 to 1968 248 to 7       240/248
(96 %)
5 diff
(98.0 %id)
BG013767 placenta_normal .a 1741 to 2061 1 to 320       320/320
(100 %)
3 diff
(99.1 %id)
BF934935 nervous_tumor .a 1752 to 2128 377 to 1     Submitted on the opposite strand 377/377
(100 %)
4 diff
(99.0 %id)
BQ752494 Prostate .a 1760 to 2004 257 to 13   AAA Submitted on the opposite strand 245/245
(100 %)
3 diff
(98.8 %id)
BP243579 Liver .a 1769 to 2350 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
AF031404   .a 1830 to 2271 300 to 741       442/741
(59 %)
6 diff
(99.2 %id)
AF487905   .a 1830 to 3293 396 to 1874       1479/1874
(78 %)
16 diff
(99.2 %id)
AF492832   .a 1830 to 2271 300 to 741       442/741
(59 %)
6 diff
(99.2 %id)
AA521115 germinal center B cell .a 1834 to 2274 441 to 2       440/451
(97 %)
5 diff
(98.9 %id)
AF024541   .a 1837 to 2271 61 to 495       435/495
(87 %)
6 diff
(98.8 %id)
AA368812 placenta .a 1859 to 2133 275 to 1       275/275
(100 %)
0 diff
(100 %id)
AF177236   .a 1882 to 2271 61 to 450       390/450
(86 %)
0 diff
(100 %id)
AF177237   .a 1882 to 2271 61 to 450       390/450
(86 %)
0 diff
(100 %id)
BF929187 nervous_tumor .a 1908 to 2317 410 to 1     Submitted on the opposite strand 410/410
(100 %)
6 diff
(98.6 %id)
DB205207 trachea .a 1959 to 2236 2 to 279   capped   278/278
(100 %)
0 diff
(100 %id)
DA937179 Spleen .a 2009 to 2584 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BP251716 hippocampus .a 2118 to 2708 2 to 592       591/592
(99 %)
1 diff
(99.9 %id)
CB989431 Human Placenta, placenta .a 2306 to 2946 39 to 682       644/933
(69 %)
19 diff
(98.0 %id)
BX494038   .a 2326 to 2520 1 to 195       195/195
(100 %)
7 diff
(96.5 %id)
BG928499 cartilage .a 2342 to 2715 96 to 469       374/393
(95 %)
1 diff
(99.8 %id)
TI_154104083   .a 2511 to 3338 880 to 71   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 810/1002
(80 %)
21 diff
(98.0 %id)
CA446251 Chondrosarcoma, Left Pubic Bone .a 2649 to 3338 698 to 11   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 688/699
(98 %)
2 diff
(99.8 %id)
BM712463 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2740 to 3285 1 to 546       546/546
(100 %)
0 diff
(100 %id)
BF999491 placenta_normal .a 2752 to 3127 17 to 398       382/398
(95 %)
6 diff
(98.5 %id)
BG000994 placenta_normal .a 2752 to 3127 17 to 398       382/398
(95 %)
6 diff
(98.5 %id)
AJ706739 heart .a 2921 to 3302 17 to 396       380/396
(95 %)
9 diff
(97.8 %id)
BQ367111 placenta_normal .a 3037 to 3500 466 to 1       466/466
(100 %)
21 diff
(95.5 %id)
BG013164 placenta_normal .a 3059 to 3501 443 to 5       439/443
(99 %)
14 diff
(96.9 %id)
BI004340 head_normal .a 3137 to 3473 361 to 27       335/361
(92 %)
7 diff
(98.1 %id)
DB442963 testis .a 3144 to 3565 1 to 420       420/420
(100 %)
8 diff
(98.1 %id)
BG949762 breast_normal .a 3164 to 3405 1 to 239       239/241
(99 %)
14 diff
(94.2 %id)
BQ366597 placenta_normal .a 3180 to 3382 28 to 230       203/230
(88 %)
13 diff
(94.4 %id)
BF992995 placenta_normal .a 3186 to 3423 1 to 238       238/250
(95 %)
5 diff
(98.0 %id)
BF993835 placenta_normal .a 3186 to 3392 1 to 207       207/207
(100 %)
0 diff
(100 %id)
BP235064 coronary artery .a 3273 to 3856 1 to 583   tiling clone,   583/583
(100 %)
3 diff
(99.5 %id)
CN340986 embryonic stem cells, cell lines H1, H7, andH9 .a 3331 to 3710 1 to 381       381/381
(100 %)
4 diff
(99.0 %id)
AU119022 whole embryo, mainly head .a 3481 to 4266 2 to 787   capped   786/786
(100 %)
1 diff
(99.9 %id)
BF985578 placenta_normal .a 3511 to 3831 1 to 318       318/334
(95 %)
4 diff
(98.9 %id)
BE767812 placenta_normal .a 3781 to 3935 162 to 8       155/162
(95 %)
0 diff
(100 %id)
BF086079 placenta_normal .a 3781 to 3907 139 to 13       127/139
(91 %)
0 diff
(100 %id)
C02520   .a 3870 to 4031 1 to 162       162/162
(100 %)
0 diff
(100 %id)
BF754625 colon .a 3924 to 4221 29 to 324       296/361
(81 %)
8 diff
(97.8 %id)
BF756260 colon .a 3945 to 4221 32 to 315       284/334
(85 %)
10 diff
(97.1 %id)
BQ301337 bocio_tumor .a 4217 to 4547 1 to 332       332/334
(99 %)
5 diff
(98.6 %id)
BF111604 pooled .a 4350 to 5027 682 to 5   tiling clone,   678/682
(99 %)
0 diff
(100 %id)
BQ448356 Knee, Osteoarthritic Cartilage .a 4405 to 5022 633 to 16   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 618/618
(100 %)
2 diff
(99.7 %id)
R66313 placenta .a 4426 to 4817 1 to 398   fully sequenced,   398/398
(100 %)
11 diff
(97.3 %id)
R69364 placenta .a 4477 to 4784 1 to 313   fully sequenced, Submitted on the opposite strand 313/313
(100 %)
8 diff
(97.5 %id)
CD109497 Human Placenta, placenta .a 4518 to 5109 30 to 632       603/802
(75 %)
21 diff
(97.4 %id)
AU145457 whole embryo, mainly head .a 4526 to 5065 530 to 1       530/576
(92 %)
20 diff
(96.6 %id)
AA661744 normal prostate, Prostate .a 4543 to 5019 477 to 1       477/477
(100 %)
0 diff
(100 %id)
BE646141 Prostate .a 4550 to 5019 470 to 1       470/470
(100 %)
1 diff
(99.8 %id)
BQ776057 Bone, Human Chondrosarcoma Cell Line .a 4727 to 5319 1 to 595     Submitted on the opposite strand 595/595
(100 %)
7 diff
(98.9 %id)
BU618726 Cell Line, Chondrosarcoma .a 4727 to 5475 1 to 750     Submitted on the opposite strand 750/750
(100 %)
10 diff
(98.7 %id)
BU619741 Cell Line, Chondrosarcoma .a 4727 to 5425 1 to 700   tiling clone, Submitted on the opposite strand 700/700
(100 %)
5 diff
(99.3 %id)
BU679357 lung, Primary Lung Epithelial Cells .a 4729 to 5022 307 to 14   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 294/326
(90 %)
2 diff
(99.4 %id)
AI493447 B-cell, chronic lymphotic leukemia .a 4730 to 5028 298 to 1       298/298
(100 %)
3 diff
(99.0 %id)
R69365 placenta .a 4754 to 5033 323 to 44   fully sequenced, Submitted on the opposite strand 280/323
(86 %)
7 diff
(97.9 %id)
R66314 placenta .a 4787 to 5026 239 to 1   fully sequenced,   239/239
(100 %)
4 diff
(98.4 %id)
BF369431 placenta_normal .a 4825 to 5260 1 to 434       434/434
(100 %)
12 diff
(97.3 %id)
BQ365533 placenta_normal .a 4826 to 5103 278 to 1       278/278
(100 %)
9 diff
(96.8 %id)
BF885570 testis_normal .a 4829 to 5351 1 to 525       525/525
(100 %)
33 diff
(93.8 %id)
BF369438 placenta_normal .a 4837 to 5237 1 to 402       402/402
(100 %)
15 diff
(96.3 %id)
BF369421 placenta_normal .a 4839 to 5103 266 to 1       266/266
(100 %)
9 diff
(96.7 %id)
BF369422 placenta_normal .a 4839 to 5103 264 to 1       264/264
(100 %)
5 diff
(98.2 %id)
BF911580 uterus_tumor .a 4839 to 5277 445 to 9     Submitted on the opposite strand 437/445
(98 %)
0 diff
(100 %id)
BQ304129 breast .a 4839 to 5268 444 to 3       442/444
(99 %)
0 diff
(100 %id)
BF369433 placenta_normal .a 4840 to 5287 1 to 444       444/444
(100 %)
5 diff
(98.9 %id)
BF369446 placenta_normal .a 4842 to 5274 1 to 428       428/428
(100 %)
6 diff
(98.6 %id)
BE769446 prostate_tumor .a 4843 to 5354 1 to 508       508/510
(99 %)
14 diff
(97.3 %id)
BF369443 placenta_normal .a 4861 to 5267 1 to 407       407/407
(100 %)
18 diff
(95.6 %id)
BF086828 placenta_normal .a 4864 to 5295 1 to 432       432/432
(100 %)
18 diff
(95.9 %id)
BF086823 placenta_normal .a 4870 to 5103 235 to 1       235/235
(100 %)
6 diff
(97.5 %id)
BF369456 placenta_normal .a 4905 to 5256 1 to 355       355/355
(100 %)
14 diff
(96.1 %id)
N91274 parathyroid gland, parathyroid tumor .a 4911 to 5286 1 to 382     Submitted on the opposite strand 382/393
(97 %)
19 diff
(95.2 %id)
BF378046 testis_normal .a 4914 to 5358 472 to 28       445/472
(94 %)
0 diff
(100 %id)
BF805917 colon_ins .a 4916 to 5186 1 to 271       271/271
(100 %)
5 diff
(98.2 %id)
BF086838 placenta_normal .a 4919 to 5358 1 to 439       439/443
(99 %)
13 diff
(97.1 %id)
BE706281 head_neck .a 4927 to 5213 29 to 315       287/315
(91 %)
10 diff
(96.9 %id)
BF086825 placenta_normal .a 4936 to 5287 19 to 372       354/372
(95 %)
7 diff
(98.2 %id)
BF086837 placenta_normal .a 4936 to 5335 32 to 432       401/432
(92 %)
8 diff
(98.2 %id)
AA368567 placenta .a 4948 to 5102 1 to 155       155/155
(100 %)
1 diff
(99.4 %id)
BF369461 placenta_normal .a 4962 to 5279 1 to 321       321/321
(100 %)
11 diff
(96.6 %id)
BG953398 colon .a 5009 to 5513 513 to 10       504/513
(98 %)
0 diff
(100 %id)
BF992761 placenta_normal .a 5080 to 5285 1 to 203       203/203
(100 %)
9 diff
(95.6 %id)
BQ719997 sympathetic trunk .a 5096 to 5991 1 to 904       904/904
(100 %)
20 diff
(97.8 %id)
T87955 liver and spleen .a 5113 to 5457 1 to 346   fully sequenced,   346/346
(100 %)
3 diff
(99.2 %id)
BX510068   .a 5141 to 5741 1 to 601       601/601
(100 %)
5 diff
(99.2 %id)
BX506483 Liver .a 5203 to 5904 1 to 702       702/702
(100 %)
6 diff
(99.2 %id)
CD642206 Embryonic Stem cells .a 5324 to 6061 52 to 789       738/878
(84 %)
11 diff
(98.8 %id)
BX504246   .a 5336 to 6049 1 to 714   tiling clone,   714/714
(100 %)
0 diff
(100 %id)
BE767561 placenta_normal .a 5408 to 5657 258 to 11       248/258
(96 %)
0 diff
(100 %id)
BE767551 placenta_normal .a 5415 to 5657 259 to 17       243/259
(93 %)
0 diff
(100 %id)
BE767560 placenta_normal .a 5415 to 5649 241 to 6       236/241
(97 %)
0 diff
(100 %id)
BF092213 testis_normal .a 5415 to 5649 241 to 9       233/241
(96 %)
2 diff
(99.2 %id)
BF986965 placenta_normal .a 5415 to 5580 164 to 1       164/164
(100 %)
6 diff
(96.4 %id)
AI075843 liver and spleen .a 5426 to 5858 438 to 6       433/438
(98 %)
0 diff
(100 %id)
T87866 liver and spleen .a 5427 to 5849 428 to 1   fully sequenced,   428/428
(100 %)
7 diff
(98.4 %id)
AA701548 liver and spleen .a 5454 to 5857 404 to 1       404/404
(100 %)
0 diff
(100 %id)
T95658 liver and spleen .a 5525 to 5847 333 to 1       333/341
(97 %)
16 diff
(95.4 %id)
AA704847 liver and spleen .a 5626 to 5850 226 to 1       226/226
(100 %)
1 diff
(99.6 %id)
AL525899 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 5694 to 6606 1 to 916       916/916
(100 %)
10 diff
(99.0 %id)
BX364473 Neuroblastoma Cot 25-normalized .a 5694 to 6658 1 to 965       965/965
(100 %)
6 diff
(99.4 %id)
DA850720 placenta .a 5831 to 6365 2 to 537   tiling clone, capped   536/536
(100 %)
1 diff
(99.9 %id)
W19753 parathyroid gland, parathyroid tumor .a 5953 to 6593 640 to 4     Submitted on the opposite strand 637/732
(87 %)
0 diff
(100 %id)
DA215386 brain .a 5956 to 6503 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
AW237282 Kidney .a 5977 to 6387 411 to 1       411/411
(100 %)
2 diff
(99.6 %id)
DA856901 placenta .a 6020 to 6567 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
EH338713   .a 6047 to 6129 1 to 83       83/83
(100 %)
1 diff
(98.8 %id)
CN345069 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 6048 to 6469 1 to 422       422/422
(100 %)
1 diff
(99.8 %id)
AL599417   .a 6115 to 6371 1 to 257       257/257
(100 %)
16 diff
(93.8 %id)
AL599443   .a 6115 to 6571 1 to 457       457/457
(100 %)
1 diff
(99.8 %id)
DB484050 hippocampus .a 6126 to 6615 1 to 490       490/490
(100 %)
2 diff
(99.6 %id)
T88676   .a 6134 to 6640 1 to 508       508/509
(99 %)
2 diff
(99.7 %id)
BE767629 placenta_normal .a 6141 to 6395 217 to 471       255/471
(54 %)
6 diff
(98.8 %id)
BF086026 placenta_normal .a 6156 to 6532 15 to 389       375/389
(96 %)
6 diff
(98.5 %id)
CN345071 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 6182 to 6759 10 to 587   tiling clone,   578/590
(97 %)
1 diff
(99.9 %id)
AA947574 pooled .a 6192 to 6542 376 to 26       351/376
(93 %)
0 diff
(100 %id)
BX486872   .a 6317 to 6482 15 to 180       166/180
(92 %)
6 diff
(96.7 %id)
EC528083 Prostate .a 6349 to 6470 1 to 119       119/119
(100 %)
5 diff
(95.8 %id)
EC472457 Prostate .a 6373 to 6477 1 to 103       103/110
(93 %)
4 diff
(96.4 %id)
EC571094 Prostate .a 6376 to 6477 1 to 99       99/104
(95 %)
4 diff
(96.2 %id)
EC453215 Prostate .a 6381 to 6477 8 to 105       98/113
(86 %)
1 diff
(99.2 %id)
AW058339 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 6384 to 6819 436 to 1       436/436
(100 %)
0 diff
(100 %id)
BU428544 lymph .a 6414 to 6908 1 to 495       495/495
(100 %)
5 diff
(99.0 %id)
TI_154149363   .a 6421 to 7112 78 to 775       698/848
(82 %)
24 diff
(97.2 %id)
CB959308 Pooled-Glandular .a 6423 to 7159 1 to 747       747/757
(98 %)
13 diff
(98.3 %id)
AL703368 human skeletal muscle .a 6458 to 6875 1 to 419       419/419
(100 %)
3 diff
(99.3 %id)
BF959032 nervous_normal .a 6503 to 6805 78 to 379       302/381
(79 %)
10 diff
(97.4 %id)
BI007056 kidney_tumor .a 6566 to 7090 539 to 12       528/539
(97 %)
0 diff
(100 %id)
BQ229512 embryonal carcinoma, cell line, testis .a 6598 to 7385 12 to 798       787/895
(87 %)
6 diff
(99.4 %id)
DB146413 thymus .a 6638 to 7206 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
AA305835 colon .a 6689 to 6997 1 to 309   tiling clone,   309/309
(100 %)
4 diff
(98.8 %id)
AW967008   .a 6697 to 7149 1 to 453       453/453
(100 %)
37 diff
(91.9 %id)
AI813354 2 pooled tumors (clear cell type), Kidney .a 6777 to 7245 1 to 469     Submitted on the opposite strand 469/470
(99 %)
4 diff
(99.2 %id)
AL600927   .a 6939 to 7541 1 to 598   tiling clone,   598/598
(100 %)
5 diff
(99.2 %id)
BQ432129 melanotic melanoma, skin .a 7057 to 7930 23 to 904   tiling clone,   882/904
(97 %)
6 diff
(99.4 %id)
AI205004 schizophrenic brain S-11 frontal lobe .a 7204 to 7453 245 to 1       245/245
(100 %)
4 diff
(98.4 %id)
CD639064 pooled .a 7271 to 8032 1 to 749       749/749
(100 %)
19 diff
(97.5 %id)
BF033953 adenocarcinoma, ovary .a 7378 to 8070 1 to 700       700/899
(77 %)
54 diff
(94.0 %id)
BP259668 heart .a 7512 to 8059 1 to 550       550/555
(99 %)
21 diff
(96.3 %id)
AI095811 uterus .a 7525 to 7587 63 to 1       63/63
(100 %)
0 diff
(100 %id)
AU136660 placenta .a 7587 to 8378 2 to 799   capped   798/800
(99 %)
14 diff
(98.3 %id)
CN345074 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 7631 to 8037 1 to 405       405/405
(100 %)
4 diff
(99.1 %id)
CD000516 Pooled-Skin .a 7638 to 8314 1 to 678       678/750
(90 %)
6 diff
(99.2 %id)
BU170453 eye, retinoblastoma .a 7642 to 8522 1 to 888   tiling clone,   888/889
(99 %)
17 diff
(98.1 %id)
AA312155   .a 7684 to 8056 1 to 373       373/373
(100 %)
0 diff
(100 %id)
AW950136   .a 7685 to 8298 1 to 614       614/614
(100 %)
0 diff
(100 %id)
AW951037   .a 7685 to 8264 1 to 591       591/647
(91 %)
23 diff
(96.5 %id)
F06031 brain, total brain .a 7726 to 7907 1 to 182       182/182
(100 %)
1 diff
(99.5 %id)
DA136287 alzheimer cortex .a 7753 to 8383 2 to 633   capped   632/632
(100 %)
7 diff
(98.9 %id)
BX498213 Liver .a 7791 to 8423 1 to 633       633/636
(99 %)
3 diff
(99.6 %id)
DA043310 bladder .a 7797 to 8350 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BM475775 embryonal carcinoma, cell line, testis .a 7828 to 8736 1 to 923       923/955
(96 %)
26 diff
(97.3 %id)
BU596247 mixed (pool of 40 RNAs) .a 7846 to 8616 1 to 776       776/776
(100 %)
12 diff
(98.5 %id)
BP220745 colon .a 7870 to 8426 1 to 558       558/558
(100 %)
7 diff
(98.8 %id)
BI761925 pooled colon, kidney, stomach .a 7957 to 8801 1 to 841       841/852
(98 %)
18 diff
(97.9 %id)
TI_57150981   .a 7957 to 8801 34 to 874       841/885
(95 %)
18 diff
(98.0 %id)
R30996 placenta .a 8026 to 8202 1 to 182       182/182
(100 %)
2 diff
(99.0 %id)
EC466159 Prostate .a 8048 to 8196 138 to 1       138/138
(100 %)
10 diff
(92.8 %id)
EH349448   .a 8050 to 8142 1 to 91       91/91
(100 %)
2 diff
(97.9 %id)
ES311714 frontal balding hair, skin .a 8050 to 8229 1 to 180       180/180
(100 %)
0 diff
(100 %id)
BU165352 eye, retinoblastoma .a 8058 to 8895 1 to 854       854/881
(96 %)
32 diff
(96.4 %id)
H90447 liver and spleen .a 8093 to 8437 1 to 351       351/358
(98 %)
9 diff
(97.5 %id)
BF674564 Prostate .a 8100 to 8385 363 to 653       627/982
(63 %)
89 diff
(91.0 %id)
BU783660 insulinoma, Pancreas .a 8112 to 8411 1 to 300       300/300
(100 %)
0 diff
(100 %id)
N59602 liver and spleen .a 8129 to 8539 55 to 467       413/467
(88 %)
7 diff
(98.6 %id)
CN345070 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 8141 to 8720 19 to 597       579/597
(96 %)
6 diff
(99.0 %id)
AW856668 colon .a 8150 to 8497 1 to 348       348/359
(96 %)
2 diff
(99.5 %id)
AW856669 colon .a 8150 to 8497 12 to 357       346/368
(94 %)
6 diff
(98.4 %id)
AW856721 colon .a 8153 to 8496 369 to 27       343/372
(92 %)
0 diff
(100 %id)
AW856725 colon .a 8153 to 8496 346 to 4       343/349
(98 %)
0 diff
(100 %id)
BE706578 head_neck .a 8155 to 8487 334 to 1       334/340
(98 %)
17 diff
(95.0 %id)
BE706641 head_neck .a 8155 to 8497 355 to 14       342/365
(93 %)
0 diff
(100 %id)
BE706773 head_neck .a 8155 to 8498 359 to 16       344/369
(93 %)
0 diff
(100 %id)
BE706775 head_neck .a 8155 to 8497 355 to 13       343/365
(93 %)
0 diff
(100 %id)
BE706778 head_neck .a 8155 to 8474 345 to 26       320/355
(90 %)
0 diff
(100 %id)
BM693203 eye, Retina Foveal and Macular .a 8157 to 8654 1 to 498     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 498/498
(100 %)
0 diff
(100 %id)
AU137579 placenta .a 8190 to 8764 2 to 578   capped   577/586
(98 %)
7 diff
(98.9 %id)
R16602 liver and spleen .a 8211 to 8609 1 to 411       411/437
(94 %)
13 diff
(97.1 %id)
R16488 liver and spleen .a 8212 to 8462 1 to 253       253/323
(78 %)
3 diff
(99.1 %id)
CX786583 human embryonic stem cells .a 8271 to 9108 15 to 852       838/852
(98 %)
6 diff
(99.3 %id)
CK903364 Islets of Langerhans, Pancreas .a 8272 to 8798 1 to 527       527/527
(100 %)
2 diff
(99.7 %id)
BI962788 Islets of Langerhans, Pancreas .a 8288 to 8839 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
BF819763 kidney_tumor .a 8316 to 8724 18 to 425       408/425
(96 %)
12 diff
(97.2 %id)
EH344579   .a 8318 to 8383 1 to 66       66/66
(100 %)
0 diff
(100 %id)
BM709286 eye, optic nerve .a 8352 to 8836 1 to 485     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 485/485
(100 %)
3 diff
(99.4 %id)
BX457362 thymus .a 8373 to 9217 1 to 845   tiling clone,   845/845
(100 %)
0 diff
(100 %id)
BE873129 adenocarcinoma, colon .a 8394 to 9201 1 to 811       811/967
(83 %)
28 diff
(97.2 %id)
BF195699 fibrotheoma, ovary .a 8397 to 8912 1 to 516     Submitted on the opposite strand 516/516
(100 %)
0 diff
(100 %id)
BU173183 melanotic melanoma, skin .a 8473 to 9298 1 to 831       831/833
(99 %)
7 diff
(99.2 %id)
BF130571 hypernephroma, Kidney .a 8479 to 9128 1 to 644       644/876
(73 %)
16 diff
(98.2 %id)
BE876643 large cell carcinoma, undifferentiated, lung .a 8488 to 8639 663 to 821       794/918
(86 %)
24 diff
(97.4 %id)
N40891 placenta .a 8508 to 8749 1 to 243       243/243
(100 %)
1 diff
(99.6 %id)
R24309 whole brain .a 8521 to 9034 1 to 524     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 524/526
(99 %)
20 diff
(96.2 %id)
T78691 whole brain .a 8549 to 9012 1 to 471     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 471/475
(99 %)
12 diff
(97.5 %id)
W70196 heart .a 8564 to 8998 1 to 439       439/439
(100 %)
4 diff
(99.1 %id)
BE088649 breast .a 8596 to 8724 1 to 128       128/128
(100 %)
3 diff
(97.7 %id)
BG284118 adenocarcinoma, cell line, Prostate .a 8600 to 9238 1 to 634       634/789
(80 %)
15 diff
(98.1 %id)
BG929030 cartilage .a 8622 to 9245 86 to 709       624/641
(97 %)
6 diff
(99.1 %id)
EL948080 eyeball .a 8628 to 8993 7 to 373       367/373
(98 %)
3 diff
(99.2 %id)
BQ706479 Spleen .a 8655 to 9355 20 to 718       699/983
(71 %)
11 diff
(98.9 %id)
TI_151770528   .a 8658 to 9185 108 to 637   fully sequenced,   530/530
(100 %)
3 diff
(99.5 %id)
BF541457 hypernephroma, Kidney .a 8712 to 9227 1 to 513       513/868
(59 %)
8 diff
(99.1 %id)
BE088650 breast .a 8743 to 8982 1 to 240       240/263
(91 %)
2 diff
(99.3 %id)
BF819764.
matches multiple genes
kidney_tumor .a 8743 to 8882 1 to 140   tiling clone, also hits gene snawplarby 140/140
(100 %)
3 diff
(97.9 %id)
BU951626 Pancreas, Purified pancreatic islet .a 8806 to 9248 1 to 443   fully sequenced,   443/443
(100 %)
0 diff
(100 %id)
CN345072 embryonic stem cells, cell lines H1, H7, andH9 .a 8811 to 9463 1 to 648       648/648
(100 %)
2 diff
(99.7 %id)
BF978597 melanotic melanoma, high MDR, skin .a 8825 to 9499 1 to 658       658/822
(80 %)
27 diff
(96.8 %id)
CN345073 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 8830 to 9364 9 to 539       531/539
(98 %)
6 diff
(98.9 %id)
TI_149302562   .a 8833 to 9773 1018 to 85   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 934/1004
(93 %)
23 diff
(97.8 %id)
R08994.
matches multiple genes
liver and spleen .a 8836 to 9161 1 to 333     also hits gene snawplarby 333/334
(99 %)
13 diff
(96.2 %id)
R01957 liver and spleen .a 8840 to 9206 1 to 378       378/399
(94 %)
18 diff
(95.5 %id)
CK001361 brain/CNS, Bulk tissue from Human Spinal cord .a 8853 to 9493 1 to 638       638/638
(100 %)
6 diff
(99.1 %id)
TI_149303746   .a 8853 to 9773 984 to 89   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 896/949
(94 %)
39 diff
(95.9 %id)
AW021454 cochlea, ear .a 8863 to 9180 2 to 313   fully sequenced, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 312/313
(99 %)
7 diff
(97.8 %id)
TI_154116946   .a 8874 to 9773 975 to 91   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 885/990
(89 %)
28 diff
(97.2 %id)
H65735 liver and spleen .a 8891 to 9227 1 to 339       339/341
(99 %)
3 diff
(99.2 %id)
TI_154125180   .a 8898 to 9773 933 to 64   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 870/1019
(85 %)
14 diff
(98.7 %id)
TI_149302773   .a 8925 to 9773 906 to 65   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 842/1006
(83 %)
28 diff
(97.3 %id)
TI_159723791   .a 8929 to 9773 919 to 80   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 840/1058
(79 %)
13 diff
(98.8 %id)
AV748810 Pituitary .a 8943 to 9459 1 to 512       512/546
(93 %)
11 diff
(98.0 %id)
AA923450 pooled .a 8944 to 9267 320 to 1       320/320
(100 %)
4 diff
(98.8 %id)
R25151 placenta .a 8970 to 9227 1 to 260     Submitted on the opposite strand 260/262
(99 %)
3 diff
(98.9 %id)
CA775782 Pancreas, Purified pancreatic islet .a 8993 to 9772 781 to 1       781/781
(100 %)
1 diff
(99.9 %id)
CA416095 Chondrosarcoma Cell line .a 9024 to 9773 769 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 751/751
(100 %)
4 diff
(99.5 %id)
CA428588 cell lines, Chondrosarcoma .a 9024 to 9773 763 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 745/745
(100 %)
7 diff
(99.1 %id)
BM981694 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 9026 to 9773 761 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 743/744
(99 %)
10 diff
(98.7 %id)
BM668443 eye, Retina Foveal and Macular .a 9044 to 9736 706 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 688/688
(100 %)
2 diff
(99.8 %id)
TI_154105178   .a 9045 to 9772 809 to 88   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 722/722
(100 %)
3 diff
(99.6 %id)
CB242781 Human Lung Epithelial cells, lung .a 9046 to 9773 741 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 723/723
(100 %)
2 diff
(99.8 %id)
BU630914 cell lines, Chondrosarcoma .a 9046 to 9773 746 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 728/728
(100 %)
0 diff
(100 %id)
BM846143 myeloma .a 9058 to 9531 1 to 469       469/469
(100 %)
2 diff
(99.6 %id)
TI_149280427   .a 9058 to 9773 793 to 79   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 715/716
(99 %)
2 diff
(99.8 %id)
CA446457 Chondrosarcoma, Left Pubic Bone .a 9074 to 9772 707 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 693/701
(98 %)
10 diff
(98.6 %id)
BF109768 pooled .a 9077 to 9586 510 to 1       510/510
(100 %)
2 diff
(99.7 %id)
BU679210 lung, Primary Lung Epithelial Cells .a 9078 to 9773 713 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 695/695
(100 %)
2 diff
(99.8 %id)
BM980735 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 9079 to 9773 713 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 695/695
(100 %)
0 diff
(100 %id)
BE672627 carcinoid, lung .a 9090 to 9542 510 to 63   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 448/448
(100 %)
3 diff
(99.4 %id)
BU782668 insulinoma, Pancreas .a 9104 to 9765 662 to 1       662/662
(100 %)
0 diff
(100 %id)
BU621800 cell lines, Chondrosarcoma .a 9110 to 9773 681 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 663/663
(100 %)
1 diff
(99.9 %id)
BX114799 whole brain .a 9112 to 9773 671 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 657/657
(100 %)
2 diff
(99.7 %id)
N93147 parathyroid gland, parathyroid tumor .a 9124 to 9363 6 to 242     Submitted on the opposite strand 237/242
(97 %)
6 diff
(97.6 %id)
BQ027254 mixed .a 9131 to 9488 1 to 362     Submitted on the opposite strand 362/362
(100 %)
6 diff
(98.4 %id)
BQ004772 Chondrosarcoma, Left Pelvis .a 9144 to 9773 644 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 626/626
(100 %)
23 diff
(96.4 %id)
BI492410 cochlea, ear .a 9150 to 9773 635 to 18   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 618/618
(100 %)
2 diff
(99.7 %id)
N32757 placenta .a 9154 to 9694 1 to 538     Submitted on the opposite strand 538/538
(100 %)
9 diff
(98.4 %id)
TI_151745987   .a 9155 to 9779 730 to 119   fully sequenced,   612/730
(83 %)
13 diff
(98.3 %id)
BU078659 Pancreas, Purified pancreatic islet .a 9184 to 9772 590 to 1       590/590
(100 %)
1 diff
(99.9 %id)
CK300460 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 9184 to 9773 603 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 585/618
(94 %)
6 diff
(99.1 %id)
TI_151733956   .a 9184 to 9773 665 to 81   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 585/978
(59 %)
6 diff
(99.4 %id)
AA948098 pooled .a 9185 to 9706 1 to 517     Submitted on the opposite strand 517/517
(100 %)
3 diff
(99.5 %id)
BI789269 Islets of Langerhans, Pancreas .a 9203 to 9774 572 to 6   tiling clone,   567/572
(99 %)
0 diff
(100 %id)
N51256 multiple sclerosis lesions .a 9206 to 9469 1 to 264     Submitted on the opposite strand 264/264
(100 %)
4 diff
(98.5 %id)
CK903363 Islets of Langerhans, Pancreas .a 9216 to 9774 564 to 6       559/564
(99 %)
0 diff
(100 %id)
BU951358 Pancreas, Purified pancreatic islet .a 9218 to 9772 556 to 1   fully sequenced,   556/556
(100 %)
1 diff
(99.9 %id)
AW003735 Kidney .a 9220 to 9773 576 to 24   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 553/553
(100 %)
1 diff
(99.9 %id)
AU156814 placenta .a 9226 to 9736 511 to 1       511/511
(100 %)
7 diff
(98.7 %id)
BQ439882 embryonal carcinoma, cell line, testis .a 9250 to 9774 564 to 40     Submitted on the opposite strand 525/564
(93 %)
0 diff
(100 %id)
BF055505 pooled .a 9251 to 9773 542 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 524/524
(100 %)
2 diff
(99.7 %id)
BM980910 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 9256 to 9773 535 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 518/518
(100 %)
0 diff
(100 %id)
BU732434 eye, optic nerve .a 9256 to 9773 536 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 518/518
(100 %)
0 diff
(100 %id)
AW340479 pooled .a 9257 to 9774 520 to 3       518/520
(99 %)
0 diff
(100 %id)
AU157222 placenta .a 9258 to 9774 523 to 9       515/546
(94 %)
0 diff
(100 %id)
AW303540 pooled .a 9260 to 9774 520 to 7       514/520
(98 %)
0 diff
(100 %id)
AI401199 brain, glioblastoma (pooled) .a 9263 to 9768 506 to 1       506/506
(100 %)
0 diff
(100 %id)
AW024718 Kidney .a 9265 to 9773 509 to 1       509/509
(100 %)
0 diff
(100 %id)
BF196062 Kidney .a 9272 to 9773 515 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 502/502
(100 %)
0 diff
(100 %id)
BF435715 pooled .a 9287 to 9773 486 to 1       486/486
(100 %)
2 diff
(99.6 %id)
AA152192 uterus .a 9292 to 9488 1 to 199   fully sequenced,   199/199
(100 %)
0 diff
(100 %id)
AA234146 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9293 to 9500 1 to 207   fully sequenced,   207/207
(100 %)
1 diff
(99.6 %id)
R22474 placenta .a 9296 to 9532 1 to 246   fully sequenced,   246/246
(100 %)
8 diff
(96.8 %id)
AW152008 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 9296 to 9681 429 to 38       392/429
(91 %)
0 diff
(100 %id)
AI284286 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9297 to 9768 472 to 1       472/472
(100 %)
2 diff
(99.6 %id)
AI142841 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9298 to 9774 478 to 2       477/478
(99 %)
0 diff
(100 %id)
AI811463 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9298 to 9774 478 to 2       477/478
(99 %)
0 diff
(100 %id)
AI799073 pooled .a 9298 to 9774 477 to 1       477/477
(100 %)
3 diff
(99.4 %id)
AW024337 Kidney .a 9298 to 9768 471 to 1       471/471
(100 %)
10 diff
(97.9 %id)
AA677349 liver and spleen .a 9300 to 9731 431 to 1       431/431
(100 %)
2 diff
(99.6 %id)
AA699905 liver and spleen .a 9302 to 9768 468 to 1       468/468
(100 %)
2 diff
(99.6 %id)
AI168804 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9303 to 9774 473 to 2       472/473
(99 %)
0 diff
(100 %id)
N30100 placenta .a 9315 to 9773 471 to 1       471/473
(99 %)
11 diff
(97.7 %id)
DB553008 hippocampus .a 9323 to 9773 1 to 451     Submitted on the opposite strand 451/452
(99 %)
2 diff
(99.6 %id)
AA676555 liver and spleen .a 9324 to 9738 416 to 1       416/416
(100 %)
2 diff
(99.6 %id)
N41756 placenta .a 9325 to 9773 460 to 1     Submitted on the opposite strand 460/462
(99 %)
9 diff
(98.1 %id)
AA774279 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9329 to 9726 1 to 398       398/398
(100 %)
6 diff
(98.5 %id)
AI339616 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9333 to 9774 448 to 7       442/448
(98 %)
0 diff
(100 %id)
BF438529 brain, glioblastoma (pooled) .a 9333 to 9768 436 to 1       436/436
(100 %)
3 diff
(99.4 %id)
AW273327 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 9336 to 9736 402 to 1       402/402
(100 %)
1 diff
(99.8 %id)
AI245167 Kidney .a 9337 to 9773 437 to 1       437/437
(100 %)
0 diff
(100 %id)
AI638134 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9337 to 9788 471 to 20   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 452/452
(100 %)
0 diff
(100 %id)
AI884365 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 9337 to 9774 442 to 4       439/442
(99 %)
0 diff
(100 %id)
BE047237 ovary, serous papillary tumor .a 9337 to 9774 444 to 7       438/444
(98 %)
0 diff
(100 %id)
BF477532 brain, glioblastoma (pooled) .a 9337 to 9774 439 to 2       438/439
(99 %)
0 diff
(100 %id)
AI858147 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9338 to 9774 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
AI017397 Kidney .a 9341 to 9773 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AA772342 parathyroid gland, parathyroid tumor .a 9342 to 9740 15 to 413     Submitted on the opposite strand 399/413
(96 %)
6 diff
(98.6 %id)
AI424329 Prostate .a 9343 to 9773 441 to 11   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 431/431
(100 %)
0 diff
(100 %id)
AA256867 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9344 to 9519 1 to 176   fully sequenced,   176/176
(100 %)
0 diff
(100 %id)
AW118809 pooled .a 9346 to 9774 431 to 3       429/431
(99 %)
0 diff
(100 %id)
BG436412 placenta .a 9351 to 9474 493 to 623       569/709
(80 %)
22 diff
(96.9 %id)
AA493868 thyroid .a 9355 to 9603 290 to 41       250/292
(85 %)
0 diff
(100 %id)
AW303894 colon, moderately-differentiated adenocarcinoma .a 9355 to 9774 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AW001681 Kidney .a 9356 to 9771 417 to 3       415/417
(99 %)
0 diff
(100 %id)
AA845888 Spleen .a 9361 to 9774 418 to 5       414/418
(99 %)
0 diff
(100 %id)
H90395 liver and spleen .a 9366 to 9744 387 to 1       387/387
(100 %)
12 diff
(96.9 %id)
BF591903 Kidney .a 9367 to 9766 407 to 9       399/407
(98 %)
0 diff
(100 %id)
BQ018807 lung, Metastatic Chondrosarcoma .a 9369 to 9736 386 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 368/374
(98 %)
0 diff
(100 %id)
AW769917 lymph node, lymphoma, follicular mixed small and largecell .a 9370 to 9774 407 to 3       405/407
(99 %)
0 diff
(100 %id)
H40515 liver and spleen .a 9371 to 9775 413 to 2       412/417
(98 %)
0 diff
(100 %id)
AI041672 parathyroid gland, parathyroid tumor .a 9373 to 9774 410 to 8       403/410
(98 %)
0 diff
(100 %id)
AI091838 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9374 to 9773 401 to 1       401/401
(100 %)
2 diff
(99.6 %id)
BM930978 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 9375 to 9773 1 to 398   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 398/398
(100 %)
1 diff
(99.8 %id)
AI970094 pooled germ cell tumors .a 9381 to 9773 394 to 1       394/394
(100 %)
6 diff
(98.5 %id)
BE551491 pooled germ cell tumors .a 9381 to 9773 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
BE501216 pooled germ cell tumors .a 9381 to 9681 394 to 94       301/394
(76 %)
0 diff
(100 %id)
BF056544 pooled germ cell tumors .a 9381 to 9773 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
W86965 liver and spleen .a 9390 to 9773 394 to 1       394/395
(99 %)
9 diff
(97.8 %id)
BE046176 follicular carcinoma, thyroid .a 9392 to 9775 387 to 4       384/387
(99 %)
0 diff
(100 %id)
AI829260 normal prostate, Prostate .a 9396 to 9773 370 to 1       370/370
(100 %)
13 diff
(96.5 %id)
AI189392 uterus .a 9398 to 9773 390 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 376/376
(100 %)
0 diff
(100 %id)
R44906 whole brain .a 9409 to 9773 387 to 12   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 376/378
(99 %)
15 diff
(96.1 %id)
R01910 liver and spleen .a 9413 to 9775 369 to 2       368/373
(98 %)
0 diff
(100 %id)
AA483790 colon .a 9415 to 9769 355 to 1       355/355
(100 %)
0 diff
(100 %id)
W70157 heart .a 9424 to 9773 352 to 1       352/429
(82 %)
6 diff
(98.7 %id)
AI033434 liver and spleen .a 9424 to 9736 314 to 1       314/314
(100 %)
1 diff
(99.7 %id)
N53673 liver and spleen .a 9427 to 9773 350 to 1       350/350
(100 %)
4 diff
(98.9 %id)
AA878623 2 pooled tumors (clear cell type), Kidney .a 9428 to 9773 346 to 1       346/346
(100 %)
1 diff
(99.8 %id)
R39315 whole brain .a 9434 to 9773 358 to 12   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 347/356
(97 %)
8 diff
(97.8 %id)
AW513962 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9434 to 9773 350 to 11   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 340/340
(100 %)
0 diff
(100 %id)
H89040.
matches multiple genes
cochlea, ear .a 9442 to 9753 1 to 314     also hits gene snawplarby 314/314
(100 %)
2 diff
(99.4 %id)
AA678271 liver and spleen .a 9445 to 9773 330 to 1       330/330
(100 %)
2 diff
(99.4 %id)
AI311817 2 pooled tumors (clear cell type), Kidney .a 9456 to 9773 338 to 21   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 318/318
(100 %)
1 diff
(99.7 %id)
AI401650 Prostate .a 9456 to 9776 321 to 1       321/321
(100 %)
0 diff
(100 %id)
AA150141 uterus .a 9458 to 9775 318 to 1   fully sequenced,   318/318
(100 %)
2 diff
(99.4 %id)
AW339615 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 9458 to 9773 316 to 1       316/316
(100 %)
0 diff
(100 %id)
AI589992 adenocarcinoma, Pancreas .a 9460 to 9774 323 to 9       315/323
(97 %)
0 diff
(100 %id)
AW083754 colon, moderately differentiated adenocarcinoma .a 9463 to 9773 330 to 20   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 311/311
(100 %)
1 diff
(99.7 %id)
R25150.
matches multiple genes
placenta .a 9466 to 9775 318 to 2   tiling clone, Submitted on the opposite strand, also hits gene snawplarby 317/318
(99 %)
0 diff
(100 %id)
AA658383   .a 9469 to 9736 285 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 268/269
(99 %)
0 diff
(100 %id)
AA962321 carcinoid, lung .a 9469 to 9773 305 to 1       305/305
(100 %)
0 diff
(100 %id)
AA234965 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9470 to 9775 306 to 1   fully sequenced,   306/306
(100 %)
1 diff
(99.7 %id)
AA582365 Kidney, kidney tumor .a 9476 to 9774 299 to 1       299/299
(100 %)
0 diff
(100 %id)
R16544 liver and spleen .a 9484 to 9774 297 to 2       296/298
(99 %)
0 diff
(100 %id)
AA256484 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 9489 to 9773 290 to 1   fully sequenced,   290/290
(100 %)
3 diff
(99.0 %id)
F02274 brain, total brain .a 9492 to 9773 282 to 1       282/282
(100 %)
0 diff
(100 %id)
AI863964 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 9495 to 9774 283 to 4       280/283
(98 %)
0 diff
(100 %id)
BM855569 stomach .a 9497 to 9772 1 to 276       276/276
(100 %)
0 diff
(100 %id)
AA883355 pooled .a 9499 to 9774 277 to 2       276/277
(99 %)
0 diff
(100 %id)
BM684473 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 9501 to 9773 290 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 272/272
(100 %)
3 diff
(98.9 %id)
R22424 placenta .a 9502 to 9773 271 to 1   fully sequenced,   271/271
(100 %)
5 diff
(98.2 %id)
AW472794 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9506 to 9774 270 to 2       269/270
(99 %)
0 diff
(100 %id)
R16788 liver and spleen .a 9508 to 9774 273 to 2       272/277
(98 %)
0 diff
(100 %id)
AI370996 brain, glioblastoma (pooled) .a 9535 to 9772 254 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 238/238
(100 %)
0 diff
(100 %id)
AI630959 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 9537 to 9774 239 to 2       238/239
(99 %)
0 diff
(100 %id)
AI471121 brain, glioblastoma (pooled) .a 9545 to 9768 224 to 1       224/224
(100 %)
0 diff
(100 %id)
AA889859 pooled .a 9548 to 9774 227 to 1       227/227
(100 %)
0 diff
(100 %id)
W38732 parathyroid gland, parathyroid tumor .a 9569 to 9738 172 to 1     Submitted on the opposite strand 172/175
(98 %)
7 diff
(96.0 %id)
H41057 eye, retina .a 9587 to 9752 169 to 1       169/169
(100 %)
4 diff
(97.7 %id)
T59801 ovary .a 9593 to 9774 1 to 182   fully sequenced,   182/182
(100 %)
0 diff
(100 %id)
AW148373 Kidney, renal cell tumor .a 9662 to 9773 135 to 24   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 112/112
(100 %)
0 diff
(100 %id)
T59667 ovary .a 9674 to 9773 100 to 1   fully sequenced,   100/100
(100 %)
0 diff
(100 %id)
BC114930 PCR rescued clones .b 1 to 6175 1 to 6175 exact tiling clone,   6175/6175
(100 %)
6 diff
(100.0 %id)
L25050   .b 399 to 4046 1 to 3647       3647/3647
(100 %)
11 diff
(99.7 %id)
L13773   .c 1 to 9390 1 to 9379 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 9379/9379
(100 %)
18 diff
(99.9 %id)
NM_005935.2   .c 14 to 9391 1 to 9378 exact RefSeq,   9378/9378
(100 %)
0 diff
(100 %id)
DA951985 Spleen .c 285 to 846 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
H91908 eye, retina .c 296 to 661 1 to 369       369/567
(65 %)
9 diff
(98.5 %id)
BF995057 placenta_normal .c 390 to 820 438 to 9       430/438
(98 %)
4 diff
(99.1 %id)
BF995202 placenta_normal .c 390 to 820 438 to 9       430/438
(98 %)
4 diff
(99.1 %id)
H91855 eye, retina .c 1096 to 1345 251 to 1       251/251
(100 %)
3 diff
(98.9 %id)
DC424136 mammary gland .d 1 to 650 23 to 670   tiling clone,   648/717
(90 %)
12 diff
(98.4 %id)
AU147965 mammary gland .d 2784 to 3366 579 to 1   tiling clone,   579/581
(99 %)
12 diff
(98.0 %id)
AK296243 thalamus .e 1 to 3161 4 to 3164 I787T tiling clone,   3164/3164
(100 %)
2 diff
(100.0 %id)
DC341278 thalamus .e 1 to 465 4 to 468       468/468
(100 %)
0 diff
(100 %id)
AK296149 thalamus .f 1 to 1668 1 to 1668 S180G tiling clone,   1668/1668
(100 %)
1 diff
(100.0 %id)
BF575588 muscle (skeletal) .f 722 to 1458 1 to 731       731/781
(93 %)
24 diff
(97.0 %id)
AK302199 testis .g 1 to 1486 1 to 1486 exact tiling clone,   1486/1929
(77 %)
0 diff
(100 %id)
BC017432 placenta .h 1 to 1481 5 to 1485 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 1482/1482
(100 %)
0 diff
(100 %id)
BF064219 pooled .i 1 to 429 494 to 65   tiling clone, AAA   430/476
(90 %)
6 diff
(98.8 %id)
BQ339856 nervous_normal .i 234 to 749 517 to 3       515/517
(99 %)
0 diff
(100 %id)
BF992483 placenta_normal .i 261 to 631 1 to 371       371/371
(100 %)
0 diff
(100 %id)
BF821368 kidney_tumor .i 320 to 891 585 to 17   tiling clone, Submitted on the opposite strand 569/585
(97 %)
0 diff
(100 %id)
BF821369 kidney_tumor .i 320 to 896 581 to 8     Submitted on the opposite strand 574/581
(98 %)
0 diff
(100 %id)
BF820554 kidney_tumor .i 321 to 866 551 to 3     Submitted on the opposite strand 549/553
(99 %)
0 diff
(100 %id)
BF820058 kidney_tumor .i 327 to 868 548 to 4     Submitted on the opposite strand 545/549
(99 %)
0 diff
(100 %id)
BF171930 blood .i 353 to 519 1 to 165       165/165
(100 %)
8 diff
(95.2 %id)
AW890559 nervous_tumor .i 395 to 604 248 to 35       214/260
(82 %)
0 diff
(100 %id)
BE181650 head_neck .i 395 to 612 223 to 4     Submitted on the opposite strand 220/235
(93 %)
0 diff
(100 %id)
BG005827 placenta_normal .i 477 to 1060 9 to 593       585/593
(98 %)
6 diff
(99.0 %id)
BG005810 placenta_normal .i 483 to 848 390 to 27       364/390
(93 %)
0 diff
(100 %id)
BF823058 kidney_tumor .i 502 to 879 378 to 1     Submitted on the opposite strand 378/378
(100 %)
5 diff
(98.7 %id)
BG005843 placenta_normal .i 502 to 1099 609 to 12   tiling clone,   598/609
(98 %)
0 diff
(100 %id)
BF925014 nervous_tumor .i 614 to 1072 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
BQ327699 kidney_tumor .i 737 to 896 1 to 162       162/162
(100 %)
6 diff
(96.3 %id)
BF820516 kidney_tumor .i 754 to 1058 1 to 305       305/305
(100 %)
22 diff
(92.8 %id)
BF773470 epid_tumor .i 772 to 1099 1 to 328   tiling clone,   328/349
(93 %)
5 diff
(98.6 %id)
AF492831   .i 896 to 1105 1 to 211       211/293
(72 %)
4 diff
(98.7 %id)
BP233082 muscle .j 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BP199186 brain .k 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
DA717277   .l 1 to 540 2 to 541 exact tiling clone, capped   540/540
(100 %)
0 diff
(100 %id)
DC358807 lung .m 1 to 586 1 to 587   tiling clone,   587/587
(100 %)
1 diff
(99.9 %id)
BP353963   .m 45 to 627 1 to 583   tiling clone,   583/583
(100 %)
19 diff
(96.8 %id)
DC316674 amygdala .m 104 to 640 1 to 539 exact tiling clone,   539/539
(100 %)
2 diff
(99.7 %id)
L13743   .m 124 to 267 1 to 144       144/144
(100 %)
0 diff
(100 %id)
AK023858 thyroid gland .n-u 1 to 2051 2 to 2049 exact tiling clone, available from FLJ,   2049/2049
(100 %)
7 diff
(99.7 %id)
AU141159 thyroid gland .n-u 1 to 824 2 to 822   capped   821/821
(100 %)
11 diff
(98.7 %id)
BG571406 placenta .n-u 364 to 1079 1 to 712   tiling clone,   712/874
(81 %)
9 diff
(99.0 %id)
AA019137 eye, retina .n-u 836 to 1140 313 to 1   tiling clone, Submitted on the opposite strand 313/313
(100 %)
10 diff
(96.9 %id)
AU158805 thyroid gland .n-u 1516 to 2051 534 to 1   tiling clone,   534/534
(100 %)
22 diff
(95.9 %id)
BX118859 pooled germ cell tumors .n-u 1797 to 2281 1 to 482       482/482
(100 %)
3 diff
(99.4 %id)
TI_149273483   .n-u 1919 to 2505 672 to 85   tiling clone, AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 588/1005
(58 %)
1 diff
(100.0 %id)
BU675849 lung, Primary Lung Epithelial Cells .n-u 1923 to 2505 600 to 17   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 584/584
(100 %)
1 diff
(99.9 %id)
AI203411 pooled germ cell tumors .n-u 2087 to 2507 421 to 1   tiling clone,   421/421
(100 %)
1 diff
(99.8 %id)
CA312819 Human Lung Epithelial cells, lung .n-u 2102 to 2505 420 to 17   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 404/413
(97 %)
0 diff
(100 %id)
DW434623 Liver .n-u 2464 to 2712 10 to 258   tiling clone,   249/258
(96 %)
5 diff
(98.1 %id)
AA057425 eye, retina .o 1 to 579 1 to 576 exact tiling clone, Submitted on the opposite strand 576/577
(99 %)
9 diff
(98.5 %id)
AJ708745 heart .o 18 to 430 504 to 20     Submitted on the opposite strand 438/504
(86 %)
9 diff
(98.3 %id)
AA019756 eye, retina .o 43 to 503 1 to 462   tiling clone, Submitted on the opposite strand 462/463
(99 %)
5 diff
(99.0 %id)
AW452664   .p 1 to 445 1 to 445 Q80K tiling clone, AAA Submitted on the opposite strand 445/445
(100 %)
5 diff
(98.9 %id)
AI400937 Prostate .p 11 to 404 1 to 394     Submitted on the opposite strand 394/394
(100 %)
4 diff
(99.0 %id)
AJ345986 pectoral muscle (after mastectomy) .p 36 to 434 1 to 399   AAA   399/399
(100 %)
2 diff
(99.5 %id)
AJ571854 pectoral muscle (after mastectomy) .p 86 to 436 1 to 349   tiling clone, AAA   349/349
(100 %)
7 diff
(98.0 %id)
BI911269 leukocyte .q 1 to 771 29 to 796 L34W V35W E36R T37R R40A ... tiling clone,   768/796
(96 %)
23 diff
(97.2 %id)
TI_57231846   .q 1 to 771 29 to 796 L34W V35W E36R T37R R40A ...     768/796
(96 %)
23 diff
(97.2 %id)
CT000107 T-Lymphocytes .r 1 to 733 1 to 734 exact tiling clone,   734/736
(99 %)
3 diff
(99.6 %id)
BE167237 head_neck .r 17 to 159 1 to 143       143/147
(97 %)
4 diff
(97.3 %id)
AA312404   .s 1 to 385 1 to 385 E4X E7K V13F C17X A18X ... tiling clone,   385/385
(100 %)
2 diff
(99.5 %id)
BF760913 colon_est .t-u 1 to 198 220 to 16   tiling clone, Submitted on the opposite strand 205/228
(89 %)
0 diff
(100 %id)
DA646374 mammary gland .t-u 94 to 864 2 to 764   tiling clone, capped   763/766
(99 %)
13 diff
(98.4 %id)
BG541465 lung .t-u 447 to 1111 1 to 668   tiling clone,   668/797
(83 %)
8 diff
(99.0 %id)
R68299 placenta .t-u 764 to 1194 12 to 443   tiling clone,   432/443
(97 %)
6 diff
(98.7 %id)
R69280 placenta .t-u 766 to 1214 11 to 469       459/471
(97 %)
18 diff
(96.2 %id)
CD514887 White Matter .t-u 788 to 1338 1 to 562   tiling clone,   562/1119
(50 %)
42 diff
(96.3 %id)
AV761568 bone marrow .t-u 1119 to 1821 1 to 690   tiling clone,   690/693
(99 %)
27 diff
(96.2 %id)
H87303 eye, retina .t-u 1158 to 1527 10 to 381       372/382
(97 %)
5 diff
(98.7 %id)
CR746820 eye, retina .t-u 1162 to 1641 1 to 480   tiling clone,   480/480
(100 %)
0 diff
(100 %id)
DB361048 mammary gland .t-u 1510 to 2062 554 to 1   tiling clone,   554/556
(99 %)
15 diff
(97.4 %id)
H87252 eye, retina .t-u 1660 to 2037 380 to 1   tiling clone,   380/380
(100 %)
3 diff
(99.3 %id)
BF431765 pooled .t-u 1711 to 2066 356 to 1   tiling clone,   356/356
(100 %)
0 diff
(100 %id)
BF104854 Kidney .u 1 to 697 1 to 695 exact tiling clone,   695/827
(84 %)
25 diff
(97.0 %id)
DB165268 thymus .va-u 1 to 558 2 to 560 L39X L40A V41C L42S T43N ... tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
FN169810 breast carcinoma .va-u 266 to 387 124 to 4     Submitted on the opposite strand 121/124
(97 %)
0 diff
(100 %id)
BI014204 lung_tumor .vb-u 1 to 417 1 to 415 exact tiling clone,   415/415
(100 %)
2 diff
(99.6 %id)
DW435513 Liver .vc-u 1 to 239 17 to 255 exact tiling clone,   239/255
(93 %)
6 diff
(97.7 %id)
AV705355 adrenal gland Gene AFF1, variant not shown         Suspected internal deletion, this clone was ignored    
DC340279 thalamus Gene AFF1, variant not shown         This clone was ignored    
DC425936 thalamus Gene AFF1, variant not shown         This clone was ignored    
AV661734 corresponding non cancerous liver tissue Gene AFF1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV661956 corresponding non cancerous liver tissue Gene AFF1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
GR564673   Gene AFF1, variant not shown         This clone was ignored    
GR564674   Gene AFF1, variant not shown         This clone was ignored    
R17085 liver and spleen Gene AFF1, variant not shown         This clone was ignored    
H78364 liver and spleen Gene AFF1, variant not shown       fully sequenced, This clone was ignored    
H78461 liver and spleen Gene AFF1, variant not shown       fully sequenced, This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o, .p, .q, .r, .s, .t-u, .u, .va-u, .vb-u, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI