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Gene ALPK3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
126 supporting clones for gene ALPK3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BF514244   .a 1 to 394 1 to 394   tiling clone, Submitted on the opposite strand 394/394
(100 %)
9 diff
(97.8 %id)
AY044449   .a 20 to 7786 1 to 7767 S210T P1299L tiling clone,   7767/7771
(99 %)
6 diff
(100.0 %id)
NM_020778.4   .a 20 to 10935 1 to 10916 exact RefSeq, AAA   10916/10916
(100 %)
0 diff
(100 %id)
AL833288 human skeletal muscle .a 1338 to 7784 1 to 6447   available from DKFZ, AAA   6447/6447
(100 %)
12 diff
(99.9 %id)
AL691554 human spinal cord .a 1653 to 1987 1 to 335       335/339
(98 %)
1 diff
(99.8 %id)
BE293231 adenocarcinoma cell line, colon .a 1774 to 2413 1 to 636       636/706
(90 %)
16 diff
(97.8 %id)
AL833276 human skeletal muscle .a 2704 to 10935 1 to 8232   tiling clone, available from DKFZ, AAA   8232/8232
(100 %)
7 diff
(100.0 %id)
AL832372 human skeletal muscle .a 2783 to 7784 1 to 5002   available from DKFZ, AAA   5002/5002
(100 %)
5 diff
(100.0 %id)
CB044562.
matches multiple genes
colon, juvenile granulosa tumor .a 3998 to 4646 8 to 656     also hits gene sarmeebu 649/656
(98 %)
6 diff
(99.1 %id)
DB292965   .a 4692 to 5316 2 to 626   capped   625/632
(98 %)
5 diff
(99.3 %id)
CN334725 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 4854 to 5481 1 to 628       628/628
(100 %)
1 diff
(99.9 %id)
AK024829   .a 5337 to 7202 1 to 1866   available from FLJ, AAA   1866/1866
(100 %)
0 diff
(100 %id)
BP207496 coronary artery .a 5337 to 5919 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA820572 pericardium .a 5338 to 5898 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AL600754   .a 5391 to 5977 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BG387298 adenocarcinoma cell line, colon .a 5507 to 6247 1 to 752       752/1036
(72 %)
30 diff
(97.2 %id)
DB250332 uterus .a 5558 to 6062 2 to 507   capped   506/506
(100 %)
2 diff
(99.7 %id)
BP232218 muscle .a 5811 to 6391 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BE717220 head_neck .a 6090 to 6519 430 to 1       430/434
(99 %)
3 diff
(99.4 %id)
BG011789 placenta_normal .a 6212 to 6425 215 to 10       206/215
(95 %)
0 diff
(100 %id)
R58376   .a 6245 to 6465 1 to 219       219/219
(100 %)
8 diff
(96.4 %id)
AL109725   .a 6392 to 7787 1 to 1396   AAA   1396/1396
(100 %)
0 diff
(100 %id)
AA018803 eye, retina .a 6392 to 6833 1 to 445       445/446
(99 %)
5 diff
(98.9 %id)
DA900018 skeletal muscle .a 6428 to 6959 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA096082 cerebellum .a 6448 to 7017 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BF694846 muscle (skeletal) .a 6532 to 7240 1 to 696       696/881
(79 %)
16 diff
(98.2 %id)
DA899432 skeletal muscle .a 6555 to 7095 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
BC040192 Brain, hippocampus .a 6671 to 10930 1 to 4259   tiling clone, available from MGC, AAA   4259/4259
(100 %)
13 diff
(99.7 %id)
BG700750 brain, hippocampus .a 6671 to 7194 1 to 537   available from MGC,   537/675
(79 %)
26 diff
(96.2 %id)
DN949337.
matches multiple genes
Islets of Langerhans, Pancreas .a 6679 to 7178 1 to 500     also hits gene SMCR7 500/500
(100 %)
0 diff
(100 %id)
CK903393 Islets of Langerhans, Pancreas .a 6680 to 7084 1 to 405       405/405
(100 %)
0 diff
(100 %id)
DB481238 hippocampus .a 6682 to 7112 1 to 431       431/431
(100 %)
0 diff
(100 %id)
BI964703 Islets of Langerhans, Pancreas .a 6696 to 7240 1 to 545       545/545
(100 %)
6 diff
(98.9 %id)
TI_227714494   .a 6807 to 7787 1068 to 98   AAA   971/971
(100 %)
13 diff
(98.7 %id)
AL365516   .a 6937 to 7785 1 to 849   AAA   849/849
(100 %)
1 diff
(99.9 %id)
CD365087 Alveolar Macrophage, lung .a 7072 to 7787 733 to 19   AAA   715/715
(100 %)
1 diff
(99.9 %id)
BM127139 Islets of Langerhans, Pancreas .a 7084 to 7460 1 to 377   fully sequenced,   377/377
(100 %)
0 diff
(100 %id)
BM127688 Islets of Langerhans, Pancreas .a 7086 to 7459 1 to 374   fully sequenced,   374/374
(100 %)
1 diff
(99.8 %id)
AL599717   .a 7227 to 7766 18 to 558       541/558
(96 %)
6 diff
(99.0 %id)
CK903392 Islets of Langerhans, Pancreas .a 7236 to 7785 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
BQ015919 lung, Metastatic Chondrosarcoma .a 7242 to 7787 562 to 17   AAA   546/554
(98 %)
2 diff
(99.7 %id)
AA780268   .a 7255 to 7786 538 to 7       532/538
(98 %)
0 diff
(100 %id)
BQ187961 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7262 to 7785 1 to 525   AAA   525/525
(100 %)
2 diff
(99.7 %id)
F28326 pectoral muscle (after mastectomy) .a 7267 to 7650 1 to 384       384/384
(100 %)
0 diff
(100 %id)
AL691555 human spinal cord .a 7269 to 7784 536 to 21   AAA   516/516
(100 %)
0 diff
(100 %id)
DB382902   .a 7283 to 7785 503 to 1       503/507
(99 %)
10 diff
(98.1 %id)
BI963127 Islets of Langerhans, Pancreas .a 7300 to 7785 501 to 16   AAA   486/486
(100 %)
7 diff
(98.6 %id)
F31426 pectoral muscle (after mastectomy) .a 7354 to 7705 1 to 354       354/354
(100 %)
10 diff
(97.2 %id)
F21992 pectoral muscle (after mastectomy) .a 7363 to 7751 1 to 392       392/392
(100 %)
5 diff
(98.8 %id)
AI051282   .a 7387 to 7786 406 to 7       400/406
(98 %)
0 diff
(100 %id)
F35613 pectoral muscle (after mastectomy) .a 7405 to 7652 1 to 248       248/248
(100 %)
3 diff
(98.8 %id)
AA019539 eye, retina .a 7425 to 7787 390 to 25   AAA   366/366
(100 %)
3 diff
(99.2 %id)
BM127383 Islets of Langerhans, Pancreas .a 7429 to 7785 357 to 1   fully sequenced,   357/357
(100 %)
2 diff
(99.5 %id)
BM126821 Islets of Langerhans, Pancreas .a 7430 to 7785 356 to 1   fully sequenced,   356/356
(100 %)
2 diff
(99.5 %id)
F37435 pectoral muscle (after mastectomy) .a 7445 to 7786 8 to 349       342/352
(97 %)
1 diff
(99.8 %id)
F32192 pectoral muscle (after mastectomy) .a 7521 to 7666 1 to 148       148/148
(100 %)
4 diff
(97.3 %id)
AL600481   .a 7577 to 8138 16 to 577       562/577
(97 %)
6 diff
(99.0 %id)
AW591388 colon, juvenile granulosa tumor .a 7591 to 8017 428 to 1       428/428
(100 %)
1 diff
(99.8 %id)
AI919108 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7632 to 7785 169 to 16   AAA   154/154
(100 %)
3 diff
(98.1 %id)
AU128653   .a 7836 to 8354 2 to 520   capped   519/519
(100 %)
1 diff
(99.9 %id)
TI_154071846   .a 7861 to 8416 661 to 103   AAA   559/560
(99 %)
23 diff
(95.9 %id)
TI_158434293   .a 8111 to 8620 561 to 53   AAA   509/953
(53 %)
21 diff
(97.8 %id)
BF851436 lung_normal .a 8210 to 8564 367 to 13     Submitted on the opposite strand 355/367
(96 %)
0 diff
(100 %id)
BC016870 Colon, adenocarcinoma .a 8230 to 10929 1 to 2702   tiling clone, available from MGC, AAA   2702/2702
(100 %)
7 diff
(99.8 %id)
CF528823 placenta .a 8236 to 8620 402 to 18   AAA   385/385
(100 %)
3 diff
(99.3 %id)
CN425449 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 8246 to 8940 1 to 695       695/695
(100 %)
4 diff
(99.5 %id)
BX419501 brain, fetal brain .a 8383 to 8880 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
DA824182 pericardium .a 8471 to 8970 2 to 501   capped   500/500
(100 %)
0 diff
(100 %id)
DA761973 tongue .a 8509 to 9027 2 to 520   capped   519/519
(100 %)
1 diff
(99.9 %id)
BQ917431 sciatic nerve .a 8563 to 9363 9 to 814   available from MGC,   806/914
(88 %)
18 diff
(98.1 %id)
BC067284 Peripheral Nervous System, sciatic nerve .a 8566 to 10929 13 to 2376   tiling clone, available from MGC, AAA   2364/2364
(100 %)
4 diff
(99.9 %id)
AK026851   .a 8579 to 10929 1 to 2350   available from FLJ, AAA   2350/2350
(100 %)
4 diff
(99.9 %id)
BX500781 Liver .a 8674 to 9231 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DA177045 amygdala .a 8692 to 9195 2 to 505   capped   504/504
(100 %)
1 diff
(99.9 %id)
BE871827 adenocarcinoma, colon .a 8723 to 8935 494 to 704   available from MGC,   646/705
(91 %)
41 diff
(94.2 %id)
BI115446 muscle, rhabdomyosarcoma .a 8730 to 9372 1 to 643       643/643
(100 %)
6 diff
(99.1 %id)
BF853857 lung_normal .a 8751 to 9232 482 to 1     Submitted on the opposite strand 482/482
(100 %)
7 diff
(98.6 %id)
BX431066 brain, fetal brain .a 8772 to 9674 1 to 903       903/907
(99 %)
6 diff
(99.4 %id)
BX431065 brain, fetal brain .a 8780 to 9689 11 to 929       919/934
(98 %)
24 diff
(97.5 %id)
DA509560 brain .a 8789 to 9353 2 to 571   capped   570/570
(100 %)
8 diff
(98.6 %id)
DA712968   .a 8849 to 9401 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA274093 corpus callosum .a 8866 to 9436 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
AU150905   .a 10386 to 10929 545 to 1       545/562
(96 %)
13 diff
(97.7 %id)
AK300484 Prostate .b 1 to 1231 8 to 1238 exact tiling clone,   1231/1231
(100 %)
2 diff
(99.9 %id)
DC382954 Prostate .b 1 to 520 8 to 527       520/520
(100 %)
0 diff
(100 %id)
DC340052 thalamus .b 48 to 590 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
DC423861 uterus .b 57 to 649 1 to 593       593/593
(100 %)
0 diff
(100 %id)
CN334726 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 1 to 487 1 to 487 E25K tiling clone,   487/487
(100 %)
1 diff
(99.8 %id)
DA899684 skeletal muscle .d-u -8 to 529 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA371170 thalamus .d-u 1 to 577 3 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA046148 bladder .d-u 1 to 576 2 to 577   tiling clone, capped   576/576
(100 %)
1 diff
(99.9 %id)
BE872834 adenocarcinoma, colon .d-u 68 to 817 1 to 743       743/906
(82 %)
13 diff
(98.6 %id)
AW816427 stomach .d-u 103 to 425 323 to 5   tiling clone,   319/329
(96 %)
0 diff
(100 %id)
AW816434 stomach .d-u 103 to 425 323 to 5       319/329
(96 %)
0 diff
(100 %id)
BM730139 insulinoma, Pancreas .d-u 104 to 660 1 to 557   tiling clone, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 557/557
(100 %)
4 diff
(99.3 %id)
R07529 liver and spleen .d-u 327 to 701 1 to 385       385/385
(100 %)
14 diff
(96.4 %id)
AL109780   .d-u 496 to 2054 1 to 1559 exact tiling clone, AAA   1559/1559
(100 %)
2 diff
(99.9 %id)
H49210 liver and spleen .d-u 612 to 1188 1 to 583   tiling clone,   583/588
(99 %)
28 diff
(95.3 %id)
BM714662 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d-u 890 to 1379 1 to 489   fully sequenced,   489/489
(100 %)
1 diff
(99.8 %id)
TI_149311127   .d-u 1182 to 2054 947 to 88 V26L AAA   860/958
(89 %)
23 diff
(97.6 %id)
BF081609 amnion_normal .d-u 1183 to 1495 316 to 1       316/316
(100 %)
7 diff
(97.8 %id)
BU689189 lung .d-u 1297 to 2054 775 to 19 V26L AAA   757/757
(100 %)
3 diff
(99.7 %id)
BU739292 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d-u 1349 to 2054 724 to 19 exact fully sequenced, AAA   706/706
(100 %)
0 diff
(100 %id)
H95467 liver and spleen .d-u 1372 to 1746 1 to 379       379/453
(83 %)
5 diff
(98.9 %id)
BQ003482 Chondrosarcoma, Left Pelvis .d-u 1375 to 2054 697 to 19 exact AAA   679/679
(100 %)
1 diff
(99.9 %id)
AA972627 carcinoid, lung .d-u 1427 to 1735 1 to 309     Submitted on the opposite strand 309/309
(100 %)
0 diff
(100 %id)
N59484 liver and spleen .d-u 1475 to 1644 1 to 171       171/171
(100 %)
1 diff
(99.5 %id)
AA702341 liver and spleen .d-u 1549 to 2050 502 to 1 exact     502/502
(100 %)
8 diff
(98.5 %id)
BP394434 pancreatic islet .d-u 1560 to 2058 1 to 500 Q16X   Submitted on the opposite strand 500/503
(99 %)
2 diff
(99.7 %id)
AA843297 parathyroid gland, parathyroid tumor .d-u 1563 to 2058 498 to 3 exact     496/498
(99 %)
0 diff
(100 %id)
DB550055 hippocampus .d-u 1566 to 2054 1 to 489 exact   Submitted on the opposite strand 489/490
(99 %)
2 diff
(99.6 %id)
BM511791 insulinoma, Pancreas .d-u 1571 to 2135 580 to 16 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 565/565
(100 %)
0 diff
(100 %id)
AW151147 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d-u 1572 to 2058 489 to 3 exact     487/489
(99 %)
0 diff
(100 %id)
AA808727 carcinoid, lung .d-u 1586 to 2055 470 to 1 exact     470/470
(100 %)
0 diff
(100 %id)
AI000726 Kidney .d-u 1602 to 2054 453 to 1 exact     453/453
(100 %)
2 diff
(99.6 %id)
AA436619   .d-u 1613 to 2058 448 to 3 exact     446/448
(99 %)
0 diff
(100 %id)
AA878780 carcinoid, lung .d-u 1645 to 2057 413 to 1 exact     413/413
(100 %)
0 diff
(100 %id)
AW170025 pooled .d-u 1653 to 2055 403 to 1 exact     403/403
(100 %)
1 diff
(99.8 %id)
C75081   .d-u 1666 to 2058 398 to 6 S4X S9X S11X S12X     393/415
(94 %)
0 diff
(100 %id)
H49396 liver and spleen .d-u 1668 to 2029 368 to 1 E7X S14X C15R Q16X L22X ...     368/368
(100 %)
8 diff
(97.9 %id)
AA094617   .d-u 1670 to 1883 1 to 213       213/213
(100 %)
14 diff
(93.5 %id)
AA629186   .d-u 1709 to 2054 357 to 12 exact AAA   346/346
(100 %)
0 diff
(100 %id)
AI468778 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d-u 1724 to 2050 327 to 1 exact     327/327
(100 %)
0 diff
(100 %id)
F26244 pectoral muscle (after mastectomy) .d-u 1725 to 1775 1 to 51       51/51
(100 %)
0 diff
(100 %id)
AA969524 2 pooled tumors (clear cell type), Kidney .d-u 1729 to 2058 330 to 1 exact     330/330
(100 %)
0 diff
(100 %id)
AA999725 Kidney .d-u 1747 to 2058 316 to 5 exact     312/316
(98 %)
0 diff
(100 %id)
AA969805 2 pooled tumors (clear cell type), Kidney .d-u 1774 to 2054 281 to 1       281/281
(100 %)
0 diff
(100 %id)
AA702272 liver and spleen .d-u 1788 to 2041 254 to 1       254/254
(100 %)
2 diff
(99.3 %id)
H54884   .d-u 1795 to 2054 261 to 1       261/272
(95 %)
2 diff
(99.3 %id)
AW149924 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d-u 1819 to 2061 246 to 2       245/246
(99 %)
0 diff
(100 %id)
AA342953 Spleen .d-u 1861 to 2054 195 to 1       195/195
(100 %)
1 diff
(99.5 %id)
AB037751 brain Gene ALPK3, variant not shown       available from KIAA, Suspected internal deletion, this clone was ignored    
AK022943   Gene ALPK3, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AA534357 colon Gene ALPK3, variant not shown         Suspected internal deletion, this clone was ignored    
BF002508 colon, colon tumor, RER+ Gene ALPK3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C